AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1385410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385410 MtrunA17_CPg0492421 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1385410 MtrunA17_Chr4g0016101 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1385410 MtrunA17_Chr3g0090841 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1385410 MtrunA17_CPg0492431 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1385410 MtrunA17_Chr3g0090851 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1385410 MtrunA17_Chr4g0016091 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1385410 MtrunA17_Chr4g0002541 83.333 60 10 0 146 205 1 60 8.38e-28 103
Msa1385410 MtrunA17_Chr4g0057401 87.179 39 5 0 233 271 1 39 6.31e-15 68.2
Msa1385410 MtrunA17_CPg0492401 78.947 38 8 0 52 89 6 43 4.76e-14 65.9
Msa1385410 MtrunA17_Chr7g0234981 82.353 34 6 0 110 143 49 82 7.44e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385410 ATCG00900.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa1385410 ATCG01240.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa1385410 ATCG00905.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa1385410 ATCG01230.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa1385410 ATMG01270.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4
Msa1385410 AT2G07696.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGACCATATAATATTTA+TGG 0.217080 tig0020748:-99353 None:intergenic
CATCAAGTTCCCGTTGAAAT+AGG 0.307921 tig0020748:+101540 Msa1385410:CDS
AGCGGGGATCTTTCACAAAA+AGG 0.310040 tig0020748:+100586 Msa1385410:CDS
AAAACGTCCAGGTCGAAATA+TGG 0.317789 tig0020748:+101614 Msa1385410:CDS
CTCGCCCCACAGCGACAAAA+TGG 0.328779 tig0020748:+100232 Msa1385410:CDS
AGATCCCCGCTTTCGTGCTT+TGG 0.334118 tig0020748:-100574 None:intergenic
CAAATTAAGTTCCGAATTAG+TGG 0.342047 tig0020748:+101641 Msa1385410:CDS
GTTGCATATCGTCATCAAAA+TGG 0.355659 tig0020748:+99416 Msa1385410:CDS
TGGCGATGCCATACGCAAAA+AGG 0.366109 tig0020748:+101680 Msa1385410:CDS
CCTTTACTCCGACAGCATCT+AGG 0.372692 tig0020748:-101166 None:intergenic
AAAAGGATTCCTATTCTAAA+GGG 0.399720 tig0020748:+100603 Msa1385410:CDS
TTTGGCAGCATCCACTAATT+CGG 0.404543 tig0020748:-101652 None:intergenic
ACGTATTGCTTGACGTAAAA+CGG 0.405511 tig0020748:-101466 None:intergenic
CATATTTAGAACGACCTTGT+TGG 0.411865 tig0020748:-101193 None:intergenic
GCTTGACGTAAAACGGATAG+TGG 0.418362 tig0020748:-101459 None:intergenic
TAGGACCATATAATATTTAT+GGG 0.424357 tig0020748:-99352 None:intergenic
GTAAAAGCAAGACGCGTAAA+CGG 0.427761 tig0020748:+101510 Msa1385410:CDS
TATGGCATCGCCATTCCCTT+TGG 0.436234 tig0020748:-101670 None:intergenic
TCCCCGCTTTCGTGCTTTGG+TGG 0.445504 tig0020748:-100571 None:intergenic
GGTTATGCACCCTTTAGAAT+AGG 0.446599 tig0020748:-100612 None:intergenic
CCCCGCTTTCGTGCTTTGGT+GGG 0.449392 tig0020748:-100570 None:intergenic
ACCCACCAAAGCACGAAAGC+GGG 0.461764 tig0020748:+100569 Msa1385410:CDS
CGAATGGATAAGAGGCTTGT+GGG 0.463465 tig0020748:-99392 None:intergenic
GGGTTGACATAAGGTGGTAT+AGG 0.464845 tig0020748:-99371 None:intergenic
TGTGTGGATCCTATTTCAAC+GGG 0.470768 tig0020748:-101549 None:intergenic
AGGCTTGTGGGGTTGACATA+AGG 0.487369 tig0020748:-99380 None:intergenic
TCGCTGTGGGGCGAGGAGAA+AGG 0.489722 tig0020748:-100224 None:intergenic
CTTTACTCCGACAGCATCTA+GGG 0.502834 tig0020748:-101165 None:intergenic
CCTAGATGCTGTCGGAGTAA+AGG 0.506750 tig0020748:+101166 Msa1385410:CDS
TTATCTATCGAGCTATGAAA+AGG 0.512086 tig0020748:+101412 Msa1385410:CDS
TTCATGCGCTTCATATTCGC+CGG 0.514693 tig0020748:+99320 Msa1385410:CDS
ATGCAACGCGAATGGATAAG+AGG 0.519590 tig0020748:-99400 None:intergenic
GACCCACCAAAGCACGAAAG+CGG 0.528018 tig0020748:+100568 Msa1385410:CDS
GTGGATGCTGCCAAAGGGAA+TGG 0.532446 tig0020748:+101660 Msa1385410:CDS
TAATCGATTAGTTAACATGT+TGG 0.538486 tig0020748:+101344 Msa1385410:intron
GGCGCATCCCGAAAACGTCC+AGG 0.540732 tig0020748:+101603 Msa1385410:intron
AAAGGAAGAGACTCATAGAA+TGG 0.548096 tig0020748:+101698 Msa1385410:CDS
TTGTGTGGATCCTATTTCAA+CGG 0.548545 tig0020748:-101550 None:intergenic
ATGACGATATGCAACGCGAA+TGG 0.551071 tig0020748:-99408 None:intergenic
ATCGAAAAGAAGCAAATGAA+AGG 0.561694 tig0020748:-102043 None:intergenic
ATTCTGTAGTCTTAGTAAGA+GGG 0.565369 tig0020748:+101093 Msa1385410:intron
TCATGGGTTCTTCTCTCCAT+CGG 0.567612 tig0020748:-102212 None:intergenic
TAACGGCGCTGTTGTTCCGA+TGG 0.571426 tig0020748:+102196 Msa1385410:CDS
AATTAGTGGATGCTGCCAAA+GGG 0.575951 tig0020748:+101655 Msa1385410:CDS
TCATGCGCTTCATATTCGCC+GGG 0.580793 tig0020748:+99321 Msa1385410:CDS
GAATTAGTGGATGCTGCCAA+AGG 0.584526 tig0020748:+101654 Msa1385410:CDS
GTGAGATATCACATTGTTCG+AGG 0.586809 tig0020748:+101140 Msa1385410:CDS
ACAGCGACAAAATGGAAGAC+TGG 0.588097 tig0020748:+100240 Msa1385410:CDS
TTCTGTAGTCTTAGTAAGAG+GGG 0.592028 tig0020748:+101094 Msa1385410:intron
AGAGACTCATAGAATGGCAG+AGG 0.593635 tig0020748:+101704 Msa1385410:CDS
GGAGTAAAGGATCGCCAACA+AGG 0.599055 tig0020748:+101179 Msa1385410:CDS
GCGAATGGATAAGAGGCTTG+TGG 0.602706 tig0020748:-99393 None:intergenic
TTGAAAGCCATATTTCGACC+TGG 0.605724 tig0020748:-101621 None:intergenic
GGACCATATAATATTTATGG+GGG 0.609209 tig0020748:-99350 None:intergenic
CGAGGAACCCTAGATGCTGT+CGG 0.617344 tig0020748:+101158 Msa1385410:CDS
GCGAGGAGAAAGGCAGCAAG+AGG 0.621301 tig0020748:-100214 None:intergenic
CCCACCAAAGCACGAAAGCG+GGG 0.626295 tig0020748:+100570 Msa1385410:CDS
AGGACCATATAATATTTATG+GGG 0.632114 tig0020748:-99351 None:intergenic
CTTGTGGGGTTGACATAAGG+TGG 0.633450 tig0020748:-99377 None:intergenic
ATTGTACCATCCTAAAAGCA+AGG 0.638231 tig0020748:-100191 None:intergenic
GGAAGGGTTAAGGATTTACC+TGG 0.642987 tig0020748:+101116 Msa1385410:CDS
AAGTTTAGTAATGAGCATAA+CGG 0.644237 tig0020748:+102179 Msa1385410:CDS
GTTAACCGTATTATGAAACA+CGG 0.650772 tig0020748:+101366 Msa1385410:CDS
TCTGTAGTCTTAGTAAGAGG+GGG 0.664205 tig0020748:+101095 Msa1385410:intron
GACCATATAATATTTATGGG+GGG 0.666516 tig0020748:-99349 None:intergenic
GAATGGATAAGAGGCTTGTG+GGG 0.674977 tig0020748:-99391 None:intergenic
ACAATGTGATATCTCACACC+AGG 0.678462 tig0020748:-101134 None:intergenic
TTTACGTCAAGCAATACGTG+GGG 0.715577 tig0020748:+101470 Msa1385410:CDS
GTTGAAATAGGATCCACACA+AGG 0.731975 tig0020748:+101552 Msa1385410:CDS
GTACCATCCTAAAAGCAAGG+AGG 0.768564 tig0020748:-100188 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTATAATTTATAAATAG+TGG - tig0020748:99603-99622 None:intergenic 10.0%
!! AATTATAAACAACTTAAATT+CGG + tig0020748:99612-99631 Msa1385410:intron 10.0%
!!! AAAAAAATTTACATTTTTCA+GGG - tig0020748:99978-99997 None:intergenic 10.0%
!!! AAAAAAAATTTACATTTTTC+AGG - tig0020748:99979-99998 None:intergenic 10.0%
!!! AAATGTAAATTTTTTTTCTT+AGG + tig0020748:99982-100001 Msa1385410:intron 10.0%
!! ATTATAAACAACTTAAATTC+GGG + tig0020748:99613-99632 Msa1385410:intron 15.0%
!! CATAGAATAGAAAATATTAA+TGG + tig0020748:100418-100437 Msa1385410:intron 15.0%
!!! CATTTTTTTATAACTTATAG+GGG - tig0020748:101249-101268 None:intergenic 15.0%
!!! CCATTTTTTTATAACTTATA+GGG - tig0020748:101250-101269 None:intergenic 15.0%
!!! TCCATTTTTTTATAACTTAT+AGG - tig0020748:101251-101270 None:intergenic 15.0%
!! AATAAATAAAGAGGAATATT+TGG + tig0020748:101925-101944 Msa1385410:intron 15.0%
!! TAGGACCATATAATATTTAT+GGG - tig0020748:99355-99374 None:intergenic 20.0%
!! ATAGGACCATATAATATTTA+TGG - tig0020748:99356-99375 None:intergenic 20.0%
!!! ATGAAAATAATGGACAAAAT+TGG + tig0020748:99665-99684 Msa1385410:intron 20.0%
!!! TTTTTTTAAGAATACTGAGT+CGG - tig0020748:99815-99834 None:intergenic 20.0%
!! ACTCAGTATTCTTAAAAAAA+TGG + tig0020748:99815-99834 Msa1385410:intron 20.0%
!!! TTAATATACAACATAGGTTT+TGG - tig0020748:100160-100179 None:intergenic 20.0%
!!! AAAAAAGAAAAGTGTTCAAT+TGG + tig0020748:100779-100798 Msa1385410:intron 20.0%
!!! AATTACTTCTCGTTATTTTT+CGG + tig0020748:100824-100843 Msa1385410:intron 20.0%
!! CCCTATAAGTTATAAAAAAA+TGG + tig0020748:101247-101266 Msa1385410:intron 20.0%
!! AGAATCAATAGAAAAAGAAT+CGG + tig0020748:101822-101841 Msa1385410:intron 20.0%
!! TTGCTTAAGAATAAATAAAG+AGG + tig0020748:101916-101935 Msa1385410:intron 20.0%
!!! AGGAATATTTGGTATTTTTT+TGG + tig0020748:101936-101955 Msa1385410:intron 20.0%
! AGGACCATATAATATTTATG+GGG - tig0020748:99354-99373 None:intergenic 25.0%
!!! AGTTTTTTTTTTTCTCGAAG+GGG - tig0020748:99544-99563 None:intergenic 25.0%
!!! CAGTTTTTTTTTTTCTCGAA+GGG - tig0020748:99545-99564 None:intergenic 25.0%
!!! TCAGTTTTTTTTTTTCTCGA+AGG - tig0020748:99546-99565 None:intergenic 25.0%
! TCTTACGCATATGAAAATAA+TGG + tig0020748:99655-99674 Msa1385410:intron 25.0%
!!! ATAATGGACAAAATTGGATT+TGG + tig0020748:99671-99690 Msa1385410:intron 25.0%
! ATCCATAGTTAATCCTATTT+CGG - tig0020748:99720-99739 None:intergenic 25.0%
! AAAATCGTCTTTAGTTAGAT+GGG - tig0020748:99766-99785 None:intergenic 25.0%
!!! TTTTTTAAGAATACTGAGTC+GGG - tig0020748:99814-99833 None:intergenic 25.0%
! AAATGGATAAATCAGAACTA+AGG + tig0020748:99832-99851 Msa1385410:intron 25.0%
!!! CACATAAGAACTTTTAGAAT+GGG - tig0020748:99937-99956 None:intergenic 25.0%
!!! ACACATAAGAACTTTTAGAA+TGG - tig0020748:99938-99957 None:intergenic 25.0%
! TTACAAATTCTGTGTTAATG+GGG - tig0020748:100058-100077 None:intergenic 25.0%
! GTTACAAATTCTGTGTTAAT+GGG - tig0020748:100059-100078 None:intergenic 25.0%
! AGTTACAAATTCTGTGTTAA+TGG - tig0020748:100060-100079 None:intergenic 25.0%
! AACCTATGTTGTATATTAAG+AGG + tig0020748:100161-100180 Msa1385410:intron 25.0%
! AACCTCTTAATATACAACAT+AGG - tig0020748:100166-100185 None:intergenic 25.0%
! TAGTATTTAGTTAGTGATCT+CGG - tig0020748:100303-100322 None:intergenic 25.0%
!! GATAGATATCTTTTCAACAT+AGG + tig0020748:100526-100545 Msa1385410:intron 25.0%
! AAAAAGGATTCCTATTCTAA+AGG + tig0020748:100602-100621 Msa1385410:CDS 25.0%
! AAAAGGATTCCTATTCTAAA+GGG + tig0020748:100603-100622 Msa1385410:CDS 25.0%
!!! ATCCAATTGGGATTTTATTT+AGG + tig0020748:100670-100689 Msa1385410:intron 25.0%
!!! GATTTTATTTAGGAGGTATT+GGG + tig0020748:100680-100699 Msa1385410:intron 25.0%
!! GAAGATTATTCTTTTTCTTC+TGG - tig0020748:100743-100762 None:intergenic 25.0%
!!! ATTACTTCTCGTTATTTTTC+GGG + tig0020748:100825-100844 Msa1385410:intron 25.0%
! TTCAATTCTTTCGAAGTAAT+TGG - tig0020748:100879-100898 None:intergenic 25.0%
! CAGAATGTTCTTGTAAATTA+TGG - tig0020748:101079-101098 None:intergenic 25.0%
!! GGGGCTAAAATAATTTATTT+TGG - tig0020748:101230-101249 None:intergenic 25.0%
! ACTAATCGATTACGATAAAT+TGG - tig0020748:101336-101355 None:intergenic 25.0%
!! TAATCGATTAGTTAACATGT+TGG + tig0020748:101344-101363 Msa1385410:intron 25.0%
!! TTTTTCCGTGTTTCATAATA+CGG - tig0020748:101374-101393 None:intergenic 25.0%
!! GATTCTTTTCCAATTATGTA+TGG - tig0020748:101808-101827 None:intergenic 25.0%
! GAAGAATTAGACCAAAAATT+AGG - tig0020748:102095-102114 None:intergenic 25.0%
! AAGTTTAGTAATGAGCATAA+CGG + tig0020748:102179-102198 Msa1385410:CDS 25.0%
GACCATATAATATTTATGGG+GGG - tig0020748:99352-99371 None:intergenic 30.0%
GGACCATATAATATTTATGG+GGG - tig0020748:99353-99372 None:intergenic 30.0%
TGGAAAAATTCACATTGCAT+TGG + tig0020748:99436-99455 Msa1385410:CDS 30.0%
GGAAAAATTCACATTGCATT+GGG + tig0020748:99437-99456 Msa1385410:CDS 30.0%
TAGTTAATCCTATTTCGGAT+AGG - tig0020748:99715-99734 None:intergenic 30.0%
ATCCGAAATAGGATTAACTA+TGG + tig0020748:99715-99734 Msa1385410:intron 30.0%
AAATCGTCTTTAGTTAGATG+GGG - tig0020748:99765-99784 None:intergenic 30.0%
CAAAATCGTCTTTAGTTAGA+TGG - tig0020748:99767-99786 None:intergenic 30.0%
!!! AAGAACTTTTAGAATGGGAA+TGG - tig0020748:99932-99951 None:intergenic 30.0%
!!! ATTTACATTTTTCAGGGTCT+CGG - tig0020748:99972-99991 None:intergenic 30.0%
TATCACTACAACAAGCATAA+TGG + tig0020748:100026-100045 Msa1385410:intron 30.0%
AGTGAAAAGGATGATTCATT+CGG + tig0020748:100103-100122 Msa1385410:intron 30.0%
! CAATTGGATCTAAAATTGAC+GGG - tig0020748:100659-100678 None:intergenic 30.0%
! CCAATTGGATCTAAAATTGA+CGG - tig0020748:100660-100679 None:intergenic 30.0%
! CGTCAATTTTAGATCCAATT+GGG + tig0020748:100658-100677 Msa1385410:intron 30.0%
CTCCTAAATAAAATCCCAAT+TGG - tig0020748:100675-100694 None:intergenic 30.0%
!! CAATTGGGATTTTATTTAGG+AGG + tig0020748:100673-100692 Msa1385410:intron 30.0%
!! GGATTTTATTTAGGAGGTAT+TGG + tig0020748:100679-100698 Msa1385410:intron 30.0%
TTGTAAATTATGGCCAATAC+CGG - tig0020748:101069-101088 None:intergenic 30.0%
! ATTCTGTAGTCTTAGTAAGA+GGG + tig0020748:101093-101112 Msa1385410:intron 30.0%
! AACAAGGTCGTTCTAAATAT+GGG + tig0020748:101195-101214 Msa1385410:intron 30.0%
! ATAAATTGGATCGGATTTTG+CGG - tig0020748:101322-101341 None:intergenic 30.0%
TCGATTACGATAAATTGGAT+CGG - tig0020748:101331-101350 None:intergenic 30.0%
GTTAACCGTATTATGAAACA+CGG + tig0020748:101366-101385 Msa1385410:CDS 30.0%
GAAACACGGAAAAAAATCAT+TGG + tig0020748:101380-101399 Msa1385410:CDS 30.0%
TTATCTATCGAGCTATGAAA+AGG + tig0020748:101412-101431 Msa1385410:CDS 30.0%
!! TCTTGCTTTTACTGCTATAT+CGG - tig0020748:101502-101521 None:intergenic 30.0%
CAAATTAAGTTCCGAATTAG+TGG + tig0020748:101641-101660 Msa1385410:CDS 30.0%
ACATAGACCTATGTTATGTA+TGG + tig0020748:101780-101799 Msa1385410:intron 30.0%
TATGGATCCATACATAACAT+AGG - tig0020748:101790-101809 None:intergenic 30.0%
TGTATGGATCCATACATAAT+TGG + tig0020748:101796-101815 Msa1385410:intron 30.0%
GAAAGACGAAATAGAAATGA+TGG + tig0020748:101870-101889 Msa1385410:intron 30.0%
ATCGAAAAGAAGCAAATGAA+AGG - tig0020748:102046-102065 None:intergenic 30.0%
! TTTCATTTGCTTCTTTTCGA+TGG + tig0020748:102045-102064 Msa1385410:CDS 30.0%
!!! CGATGGAAGTTTTATTTTTC+CGG + tig0020748:102062-102081 Msa1385410:CDS 30.0%
CCAAAAATTAGGATCAATTC+CGG - tig0020748:102084-102103 None:intergenic 30.0%
! AGATAGATCTTTTTGATCAG+AGG - tig0020748:102136-102155 None:intergenic 30.0%
CTGATCAAAAAGATCTATCT+TGG + tig0020748:102136-102155 Msa1385410:CDS 30.0%
TGCCCCCCATAAATATTATA+TGG + tig0020748:99347-99366 Msa1385410:CDS 35.0%
GTTGCATATCGTCATCAAAA+TGG + tig0020748:99416-99435 Msa1385410:CDS 35.0%
ATTCACATTGCATTGGGTTT+AGG + tig0020748:99443-99462 Msa1385410:intron 35.0%
TTCACATTGCATTGGGTTTA+GGG + tig0020748:99444-99463 Msa1385410:intron 35.0%
CTGACTAATCCTAAGTCAAA+AGG + tig0020748:99562-99581 Msa1385410:intron 35.0%
AAGAGTAGAGTGTGAAAAGA+AGG - tig0020748:99639-99658 None:intergenic 35.0%
!!! TTTACATTTTTCAGGGTCTC+GGG - tig0020748:99971-99990 None:intergenic 35.0%
TTGCCTAGTATTCAGTGAAA+AGG + tig0020748:100090-100109 Msa1385410:intron 35.0%
! CATCCTTTTCACTGAATACT+AGG - tig0020748:100096-100115 None:intergenic 35.0%
ATTGTACCATCCTAAAAGCA+AGG - tig0020748:100194-100213 None:intergenic 35.0%
! TCTTTTCTGTATACTCTCTC+TGG + tig0020748:100457-100476 Msa1385410:intron 35.0%
TGTAAAGCGTGTGATAGTAA+CGG - tig0020748:100485-100504 None:intergenic 35.0%
! CCGTCAATTTTAGATCCAAT+TGG + tig0020748:100657-100676 Msa1385410:intron 35.0%
TACTTCGAAAGAATTGAACG+AGG + tig0020748:100881-100900 Msa1385410:intron 35.0%
! CATGAGATTTTCACCTCATA+CGG - tig0020748:100909-100928 None:intergenic 35.0%
TGAGGTGAAAATCTCATGTA+CGG + tig0020748:100911-100930 Msa1385410:intron 35.0%
!!! TGGTTTTTTAGGGGTAATAG+TGG - tig0020748:100979-100998 None:intergenic 35.0%
!!! AGGCAGAGTTTGGTTTTTTA+GGG - tig0020748:100989-101008 None:intergenic 35.0%
!!! AAGGCAGAGTTTGGTTTTTT+AGG - tig0020748:100990-101009 None:intergenic 35.0%
GAAATCACTGCTTATATACC+CGG + tig0020748:101047-101066 Msa1385410:intron 35.0%
TGTAAATTATGGCCAATACC+GGG - tig0020748:101068-101087 None:intergenic 35.0%
! CATTCTGTAGTCTTAGTAAG+AGG + tig0020748:101092-101111 Msa1385410:intron 35.0%
! TTCTGTAGTCTTAGTAAGAG+GGG + tig0020748:101094-101113 Msa1385410:intron 35.0%
! CATATTTAGAACGACCTTGT+TGG - tig0020748:101196-101215 None:intergenic 35.0%
! CAACAAGGTCGTTCTAAATA+TGG + tig0020748:101194-101213 Msa1385410:intron 35.0%
! ACAAGGTCGTTCTAAATATG+GGG + tig0020748:101196-101215 Msa1385410:intron 35.0%
ACGTATTGCTTGACGTAAAA+CGG - tig0020748:101469-101488 None:intergenic 35.0%
! TTTTACGTCAAGCAATACGT+GGG + tig0020748:101469-101488 Msa1385410:CDS 35.0%
!! CTTGCTTTTACTGCTATATC+GGG - tig0020748:101501-101520 None:intergenic 35.0%
TTGTGTGGATCCTATTTCAA+CGG - tig0020748:101553-101572 None:intergenic 35.0%
AAAGGAAGAGACTCATAGAA+TGG + tig0020748:101698-101717 Msa1385410:CDS 35.0%
! ATTTTCGTTAATCCATGAGC+AGG + tig0020748:101745-101764 Msa1385410:intron 35.0%
! CCGGAATTGATCCTAATTTT+TGG + tig0020748:102081-102100 Msa1385410:CDS 35.0%
!!! TTTTTTTCTCGAAGGGGCAA+CGG - tig0020748:99538-99557 None:intergenic 40.0%
!!! GTTTCTCGACCTTTTGACTT+AGG - tig0020748:99574-99593 None:intergenic 40.0%
AGAACTAAGGCAAGATGAGA+TGG + tig0020748:99845-99864 Msa1385410:intron 40.0%
ATCGTTGGCACAAGAAAGAA+GGG - tig0020748:99876-99895 None:intergenic 40.0%
TTCGCAAATGGTAAGATCGT+TGG - tig0020748:99891-99910 None:intergenic 40.0%
CTTACCATTTGCGAAGTAAC+TGG + tig0020748:99896-99915 Msa1385410:intron 40.0%
AACTCCAGTTACTTCGCAAA+TGG - tig0020748:99903-99922 None:intergenic 40.0%
!!! TTACATTTTTCAGGGTCTCG+GGG - tig0020748:99970-99989 None:intergenic 40.0%
TTCACTGAATACTAGGCAAG+AGG - tig0020748:100089-100108 None:intergenic 40.0%
! TTTTGGCAATGCAATGTGGT+TGG - tig0020748:100143-100162 None:intergenic 40.0%
!! TAGGTTTTGGCAATGCAATG+TGG - tig0020748:100147-100166 None:intergenic 40.0%
TTTCTTGCGTGATGAACTGT+TGG - tig0020748:100268-100287 None:intergenic 40.0%
AACAGTTCATCACGCAAGAA+AGG + tig0020748:100267-100286 Msa1385410:intron 40.0%
!! GGTTATGCACCCTTTAGAAT+AGG - tig0020748:100615-100634 None:intergenic 40.0%
TTAGTGTGAGCTTATCCATG+CGG - tig0020748:100636-100655 None:intergenic 40.0%
!!! CTTCTCGTTATTTTTCGGGA+AGG + tig0020748:100829-100848 Msa1385410:intron 40.0%
!!! GGCAGAGTTTGGTTTTTTAG+GGG - tig0020748:100988-101007 None:intergenic 40.0%
ACTTTACGTAAGGCAGAGTT+TGG - tig0020748:100999-101018 None:intergenic 40.0%
TACTCTGGCAACTTTACGTA+AGG - tig0020748:101009-101028 None:intergenic 40.0%
AGCAGTGATTTCAAATCCAG+AGG - tig0020748:101039-101058 None:intergenic 40.0%
ACTGCTTATATACCCGGTAT+TGG + tig0020748:101053-101072 Msa1385410:intron 40.0%
! TCTGTAGTCTTAGTAAGAGG+GGG + tig0020748:101095-101114 Msa1385410:intron 40.0%
ACAATGTGATATCTCACACC+AGG - tig0020748:101137-101156 None:intergenic 40.0%
GTGAGATATCACATTGTTCG+AGG + tig0020748:101140-101159 Msa1385410:CDS 40.0%
! GTTTTACGTCAAGCAATACG+TGG + tig0020748:101468-101487 Msa1385410:CDS 40.0%
TTTACGTCAAGCAATACGTG+GGG + tig0020748:101470-101489 Msa1385410:CDS 40.0%
GTAAAAGCAAGACGCGTAAA+CGG + tig0020748:101510-101529 Msa1385410:CDS 40.0%
CATCAAGTTCCCGTTGAAAT+AGG + tig0020748:101540-101559 Msa1385410:CDS 40.0%
TGTGTGGATCCTATTTCAAC+GGG - tig0020748:101552-101571 None:intergenic 40.0%
GTTGAAATAGGATCCACACA+AGG + tig0020748:101552-101571 Msa1385410:CDS 40.0%
! CTTGCCATTCGTTGGTTATT+AGG + tig0020748:101582-101601 Msa1385410:intron 40.0%
! TATTTCGACCTGGACGTTTT+CGG - tig0020748:101614-101633 None:intergenic 40.0%
AAAACGTCCAGGTCGAAATA+TGG + tig0020748:101614-101633 Msa1385410:CDS 40.0%
TTGAAAGCCATATTTCGACC+TGG - tig0020748:101624-101643 None:intergenic 40.0%
TTTGGCAGCATCCACTAATT+CGG - tig0020748:101655-101674 None:intergenic 40.0%
! AATTAGTGGATGCTGCCAAA+GGG + tig0020748:101655-101674 Msa1385410:CDS 40.0%
! AGTCTCTTCCTTTTTGCGTA+TGG - tig0020748:101691-101710 None:intergenic 40.0%
GTGTATATAGATCCTGCTCA+TGG - tig0020748:101760-101779 None:intergenic 40.0%
! ATGGCTCAACTAAGCACTTT+TGG + tig0020748:101889-101908 Msa1385410:intron 40.0%
! TGGCTCAACTAAGCACTTTT+GGG + tig0020748:101890-101909 Msa1385410:intron 40.0%
TTCATGCGCTTCATATTCGC+CGG + tig0020748:99320-99339 Msa1385410:CDS 45.0%
GGGTTGACATAAGGTGGTAT+AGG - tig0020748:99374-99393 None:intergenic 45.0%
GAATGGATAAGAGGCTTGTG+GGG - tig0020748:99394-99413 None:intergenic 45.0%
CGAATGGATAAGAGGCTTGT+GGG - tig0020748:99395-99414 None:intergenic 45.0%
ATGCAACGCGAATGGATAAG+AGG - tig0020748:99403-99422 None:intergenic 45.0%
ATGACGATATGCAACGCGAA+TGG - tig0020748:99411-99430 None:intergenic 45.0%
CAACTGCTCCTATCCGAAAT+AGG + tig0020748:99704-99723 Msa1385410:intron 45.0%
GATCGTTGGCACAAGAAAGA+AGG - tig0020748:99877-99896 None:intergenic 45.0%
!!! TACATTTTTCAGGGTCTCGG+GGG - tig0020748:99969-99988 None:intergenic 45.0%
!! AGGTTGACCTCCTTGCTTTT+AGG + tig0020748:100181-100200 Msa1385410:CDS 45.0%
!! TGACCTCCTTGCTTTTAGGA+TGG + tig0020748:100185-100204 Msa1385410:CDS 45.0%
GTACCATCCTAAAAGCAAGG+AGG - tig0020748:100191-100210 None:intergenic 45.0%
! TCTTCCATTTTGTCGCTGTG+GGG - tig0020748:100239-100258 None:intergenic 45.0%
! GTCTTCCATTTTGTCGCTGT+GGG - tig0020748:100240-100259 None:intergenic 45.0%
! AGTCTTCCATTTTGTCGCTG+TGG - tig0020748:100241-100260 None:intergenic 45.0%
ACAGCGACAAAATGGAAGAC+TGG + tig0020748:100240-100259 Msa1385410:CDS 45.0%
AGCGGGGATCTTTCACAAAA+AGG + tig0020748:100586-100605 Msa1385410:CDS 45.0%
!! AGGAGGTATTGGGAACGAAT+TGG + tig0020748:100690-100709 Msa1385410:intron 45.0%
!!! CGTTATTTTTCGGGAAGGAG+TGG + tig0020748:100834-100853 Msa1385410:intron 45.0%
GAGTGGAGATTATCGAACGA+AGG + tig0020748:100851-100870 Msa1385410:intron 45.0%
TCATGTACGGTTCTGTAGAG+TGG + tig0020748:100924-100943 Msa1385410:intron 45.0%
! TAGTCTTAGTAAGAGGGGGA+AGG + tig0020748:101099-101118 Msa1385410:intron 45.0%
AGTCTTAGTAAGAGGGGGAA+GGG + tig0020748:101100-101119 Msa1385410:intron 45.0%
GGAAGGGTTAAGGATTTACC+TGG + tig0020748:101116-101135 Msa1385410:CDS 45.0%
CTTTACTCCGACAGCATCTA+GGG - tig0020748:101168-101187 None:intergenic 45.0%
! TCCCTTTTACGCTCATGTCA+CGG + tig0020748:101274-101293 Msa1385410:intron 45.0%
GCTTGACGTAAAACGGATAG+TGG - tig0020748:101462-101481 None:intergenic 45.0%
!! GAAAAGCACTTGCCATTCGT+TGG + tig0020748:101574-101593 Msa1385410:intron 45.0%
TGCGCCTAATAACCAACGAA+TGG - tig0020748:101589-101608 None:intergenic 45.0%
! ATTTCGACCTGGACGTTTTC+GGG - tig0020748:101613-101632 None:intergenic 45.0%
! GAATTAGTGGATGCTGCCAA+AGG + tig0020748:101654-101673 Msa1385410:CDS 45.0%
AGAGACTCATAGAATGGCAG+AGG + tig0020748:101704-101723 Msa1385410:CDS 45.0%
! GGCTCAACTAAGCACTTTTG+GGG + tig0020748:101891-101910 Msa1385410:intron 45.0%
TCATGGGTTCTTCTCTCCAT+CGG - tig0020748:102215-102234 None:intergenic 45.0%
TCATGCGCTTCATATTCGCC+GGG + tig0020748:99321-99340 Msa1385410:CDS 50.0%
TATTTATGGGGGGCAACTCC+CGG - tig0020748:99342-99361 None:intergenic 50.0%
CTTGTGGGGTTGACATAAGG+TGG - tig0020748:99380-99399 None:intergenic 50.0%
AGGCTTGTGGGGTTGACATA+AGG - tig0020748:99383-99402 None:intergenic 50.0%
GCGAATGGATAAGAGGCTTG+TGG - tig0020748:99396-99415 None:intergenic 50.0%
TGATGACTTCCACCACGTCA+AGG + tig0020748:99483-99502 Msa1385410:intron 50.0%
! ACGGAAGGGGTATAACTCAG+CGG - tig0020748:99519-99538 None:intergenic 50.0%
!!! ACATTTTTCAGGGTCTCGGG+GGG - tig0020748:99968-99987 None:intergenic 50.0%
! CTAAAGGGTGCATAACCGCA+TGG + tig0020748:100618-100637 Msa1385410:intron 50.0%
ATTGAACGAGGAGCCGTATG+AGG + tig0020748:100893-100912 Msa1385410:intron 50.0%
GGTTCTGTAGAGTGGCAGTA+AGG + tig0020748:100932-100951 Msa1385410:intron 50.0%
TCCAGAGGTTAAGCGTACTC+TGG - tig0020748:101024-101043 None:intergenic 50.0%
AGTAAGAGGGGGAAGGGTTA+AGG + tig0020748:101106-101125 Msa1385410:intron 50.0%
CCTTTACTCCGACAGCATCT+AGG - tig0020748:101169-101188 None:intergenic 50.0%
CCTAGATGCTGTCGGAGTAA+AGG + tig0020748:101166-101185 Msa1385410:CDS 50.0%
GGAGTAAAGGATCGCCAACA+AGG + tig0020748:101179-101198 Msa1385410:CDS 50.0%
GCCGTGACATGAGCGTAAAA+GGG - tig0020748:101278-101297 None:intergenic 50.0%
! GGCAAGTGCTTTTCCTTGTG+TGG - tig0020748:101568-101587 None:intergenic 50.0%
TATGGCATCGCCATTCCCTT+TGG - tig0020748:101673-101692 None:intergenic 50.0%
TGGCGATGCCATACGCAAAA+AGG + tig0020748:101680-101699 Msa1385410:CDS 50.0%
! AGAGTGTCACCTTGACGTGG+TGG - tig0020748:99495-99514 None:intergenic 55.0%
! GGTAGAGTGTCACCTTGACG+TGG - tig0020748:99498-99517 None:intergenic 55.0%
TTCTCGAAGGGGCAACGGAA+GGG - tig0020748:99533-99552 None:intergenic 55.0%
TTTCTCGAAGGGGCAACGGA+AGG - tig0020748:99534-99553 None:intergenic 55.0%
!!! ATTTTTCAGGGTCTCGGGGG+GGG - tig0020748:99966-99985 None:intergenic 55.0%
!!! CATTTTTCAGGGTCTCGGGG+GGG - tig0020748:99967-99986 None:intergenic 55.0%
GACCCACCAAAGCACGAAAG+CGG + tig0020748:100568-100587 Msa1385410:CDS 55.0%
ACCCACCAAAGCACGAAAGC+GGG + tig0020748:100569-100588 Msa1385410:CDS 55.0%
AGATCCCCGCTTTCGTGCTT+TGG - tig0020748:100577-100596 None:intergenic 55.0%
GCCAGAGTACGCTTAACCTC+TGG + tig0020748:101020-101039 Msa1385410:intron 55.0%
CGAGGAACCCTAGATGCTGT+CGG + tig0020748:101158-101177 Msa1385410:CDS 55.0%
CGCCGTGACATGAGCGTAAA+AGG - tig0020748:101279-101298 None:intergenic 55.0%
TTTACGCTCATGTCACGGCG+AGG + tig0020748:101279-101298 Msa1385410:intron 55.0%
GTGGATGCTGCCAAAGGGAA+TGG + tig0020748:101660-101679 Msa1385410:CDS 55.0%
TAACGGCGCTGTTGTTCCGA+TGG + tig0020748:102196-102215 Msa1385410:CDS 55.0%
TCTCGAAGGGGCAACGGAAG+GGG - tig0020748:99532-99551 None:intergenic 60.0%
GCGAGGAGAAAGGCAGCAAG+AGG - tig0020748:100217-100236 None:intergenic 60.0%
! CATTTTGTCGCTGTGGGGCG+AGG - tig0020748:100234-100253 None:intergenic 60.0%
CTCGCCCCACAGCGACAAAA+TGG + tig0020748:100232-100251 Msa1385410:CDS 60.0%
CCCCGCTTTCGTGCTTTGGT+GGG - tig0020748:100573-100592 None:intergenic 60.0%
CCCACCAAAGCACGAAAGCG+GGG + tig0020748:100570-100589 Msa1385410:CDS 60.0%
TCCCCGCTTTCGTGCTTTGG+TGG - tig0020748:100574-100593 None:intergenic 60.0%
TCGCTGTGGGGCGAGGAGAA+AGG - tig0020748:100227-100246 None:intergenic 65.0%
GGCGCATCCCGAAAACGTCC+AGG + tig0020748:101603-101622 Msa1385410:intron 65.0%
Chromosome Type Strat End Strand Name
tig0020748 gene 99306 102236 99306 ID=Msa1385410;Name=Msa1385410
tig0020748 mRNA 99306 102236 99306 ID=Msa1385410-mRNA-1;Parent=Msa1385410;Name=Msa1385410-mRNA-1;_AED=0.34;_eAED=0.44;_QI=0|0|0|1|0|0|7|0|336
tig0020748 exon 99306 99458 99306 ID=Msa1385410-mRNA-1:exon:9564;Parent=Msa1385410-mRNA-1
tig0020748 exon 100181 100270 100181 ID=Msa1385410-mRNA-1:exon:9565;Parent=Msa1385410-mRNA-1
tig0020748 exon 100531 100624 100531 ID=Msa1385410-mRNA-1:exon:9566;Parent=Msa1385410-mRNA-1
tig0020748 exon 101108 101200 101108 ID=Msa1385410-mRNA-1:exon:9567;Parent=Msa1385410-mRNA-1
tig0020748 exon 101355 101591 101355 ID=Msa1385410-mRNA-1:exon:9568;Parent=Msa1385410-mRNA-1
tig0020748 exon 101604 101750 101604 ID=Msa1385410-mRNA-1:exon:9569;Parent=Msa1385410-mRNA-1
tig0020748 exon 102043 102236 102043 ID=Msa1385410-mRNA-1:exon:9570;Parent=Msa1385410-mRNA-1
tig0020748 CDS 99306 99458 99306 ID=Msa1385410-mRNA-1:cds;Parent=Msa1385410-mRNA-1
tig0020748 CDS 100181 100270 100181 ID=Msa1385410-mRNA-1:cds;Parent=Msa1385410-mRNA-1
tig0020748 CDS 100531 100624 100531 ID=Msa1385410-mRNA-1:cds;Parent=Msa1385410-mRNA-1
tig0020748 CDS 101108 101200 101108 ID=Msa1385410-mRNA-1:cds;Parent=Msa1385410-mRNA-1
tig0020748 CDS 101355 101591 101355 ID=Msa1385410-mRNA-1:cds;Parent=Msa1385410-mRNA-1
tig0020748 CDS 101604 101750 101604 ID=Msa1385410-mRNA-1:cds;Parent=Msa1385410-mRNA-1
tig0020748 CDS 102043 102236 102043 ID=Msa1385410-mRNA-1:cds;Parent=Msa1385410-mRNA-1
Gene Sequence

>Msa1385410

ATGAATAACTTGTATTCATGCGCTTCATATTCGCCGGGAGTTGCCCCCCATAAATATTATATGGTCCTATACCACCTTATGTCAACCCCACAAGCCTCTTATCCATTCGCGTTGCATATCGTCATCAAAATGGAAAAATTCACATTGCATTGGAGGTTGACCTCCTTGCTTTTAGGATGGTACAATCCTCTTGCTGCCTTTCTCCTCGCCCCACAGCGACAAAATGGAAGACTGGTGCCAACAATATCTTTTCAACATAGGTCATCGAAAGCATCTCGAAGACCCACCAAAGCACGAAAGCGGGGATCTTTCACAAAAAGGATTCCTATTCTAAAGGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGCCAACAAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCCGTTTTACGTCAAGCAATACGTGGGGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCCCTTTCATTTGCTTCTTTTCGATGGAAGTTTTATTTTTCCGGAATTGATCCTAATTTTTGGTCTAATTCTTCTTCTGATGATTGATTTAACCTCTGATCAAAAAGATCTATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCGCTGTTGTTCCGATGGAGAGAAGAACCCATGATT

Protein sequence

>Msa1385410

MNNLYSCASYSPGVAPHKYYMVLYHLMSTPQASYPFALHIVIKMEKFTLHWRLTSLLLGWYNPLAAFLLAPQRQNGRLVPTISFQHRSSKASRRPTKARKRGSFTKRIPILKVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIRGVTPDIAVKARRVNGSTHQVPVEIGSTQGKALAIRASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFPFHLLLFDGSFIFPELILIFGLILLLMIDLTSDQKDLSWFYFISSTSLVMSITALLFRWREEPMI