Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391110 | AES69829.1 | 75.145 | 173 | 12 | 2 | 1 | 150 | 1 | 165 | 2.67e-75 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391110 | sp|A4GYN8|RR12B_POPTR | 95.876 | 97 | 4 | 0 | 61 | 157 | 39 | 135 | 3.89e-61 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391110 | G7J101 | 75.145 | 173 | 12 | 2 | 1 | 150 | 1 | 165 | 1.28e-75 | 251 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095150 | Msa1391110 | 0.809585 | 1.759407e-50 | -8.615850e-47 |
| Msa0095230 | Msa1391110 | 0.808474 | 3.043466e-50 | -8.615850e-47 |
| Msa1354320 | Msa1391110 | 0.806910 | 6.537615e-50 | -8.615850e-47 |
| Msa1354420 | Msa1391110 | 0.896946 | 2.261898e-76 | -8.615850e-47 |
| Msa1354430 | Msa1391110 | 0.842403 | 2.641981e-58 | -8.615850e-47 |
| Msa1354480 | Msa1391110 | 0.837094 | 6.366555e-57 | -8.615850e-47 |
| Msa1354490 | Msa1391110 | 0.858145 | 1.007315e-62 | -8.615850e-47 |
| Msa1354500 | Msa1391110 | 0.946575 | 3.554134e-105 | -8.615850e-47 |
| Msa1354550 | Msa1391110 | 0.896971 | 2.209528e-76 | -8.615850e-47 |
| Msa1354560 | Msa1391110 | 0.837212 | 5.938418e-57 | -8.615850e-47 |
| Msa1354610 | Msa1391110 | 0.873613 | 1.283371e-67 | -8.615850e-47 |
| Msa1354620 | Msa1391110 | 0.855671 | 5.395504e-62 | -8.615850e-47 |
| Msa1354630 | Msa1391110 | 0.963536 | 3.322546e-122 | -8.615850e-47 |
| Msa1354680 | Msa1391110 | 0.916071 | 2.765612e-85 | -8.615850e-47 |
| Msa1354690 | Msa1391110 | 0.865488 | 5.695789e-65 | -8.615850e-47 |
| Msa1354700 | Msa1391110 | 0.839875 | 1.219651e-57 | -8.615850e-47 |
| Msa1354740 | Msa1391110 | 0.858237 | 9.457479e-63 | -8.615850e-47 |
| Msa1354750 | Msa1391110 | 0.863086 | 3.200135e-64 | -8.615850e-47 |
| Msa1354760 | Msa1391110 | 0.955422 | 3.147932e-113 | -8.615850e-47 |
| Msa1354810 | Msa1391110 | 0.895627 | 8.005061e-76 | -8.615850e-47 |
| Msa1354820 | Msa1391110 | 0.839644 | 1.401150e-57 | -8.615850e-47 |
| Msa1354920 | Msa1391110 | 0.843403 | 1.431249e-58 | -8.615850e-47 |
| Msa1354980 | Msa1391110 | 0.898450 | 5.243606e-77 | -8.615850e-47 |
| Msa1354990 | Msa1391110 | 0.852634 | 4.058218e-61 | -8.615850e-47 |
| Msa1355080 | Msa1391110 | 0.816292 | 5.960487e-52 | -8.615850e-47 |
| Msa1355090 | Msa1391110 | 0.835269 | 1.850965e-56 | -8.615850e-47 |
| Msa1365890 | Msa1391110 | 0.876516 | 1.312232e-68 | -8.615850e-47 |
| Msa1365900 | Msa1391110 | 0.838175 | 3.361619e-57 | -8.615850e-47 |
| Msa1365950 | Msa1391110 | 0.857705 | 1.360219e-62 | -8.615850e-47 |
| Msa1365960 | Msa1391110 | 0.814552 | 1.453988e-51 | -8.615850e-47 |
| Msa1365970 | Msa1391110 | 0.931215 | 5.244604e-94 | -8.615850e-47 |
| Msa1366080 | Msa1391110 | 0.877149 | 7.922894e-69 | -8.615850e-47 |
| Msa1366090 | Msa1391110 | 0.825766 | 3.919128e-54 | -8.615850e-47 |
| Msa1368230 | Msa1391110 | 0.844582 | 6.916191e-59 | -8.615850e-47 |
| Msa1368240 | Msa1391110 | 0.941035 | 8.368226e-101 | -8.615850e-47 |
| Msa1380610 | Msa1391110 | 0.813327 | 2.707142e-51 | -8.615850e-47 |
| Msa1380620 | Msa1391110 | 0.806021 | 1.006864e-49 | -8.615850e-47 |
| Msa1385410 | Msa1391110 | 0.857693 | 1.371550e-62 | -8.615850e-47 |
| Msa1385420 | Msa1391110 | 0.831100 | 2.021565e-55 | -8.615850e-47 |
| Msa1391090 | Msa1391110 | 0.832963 | 7.001197e-56 | -8.615850e-47 |
| Msa1391100 | Msa1391110 | 0.851327 | 9.542576e-61 | -8.615850e-47 |
| Msa1391110 | Msa1391160 | 0.853849 | 1.820250e-61 | -8.615850e-47 |
| Msa1391110 | Msa1391170 | 0.863134 | 3.092126e-64 | -8.615850e-47 |
| Msa1391110 | Msa1391220 | 0.833847 | 4.216138e-56 | -8.615850e-47 |
| Msa1391110 | Msa1391230 | 0.836213 | 1.067424e-56 | -8.615850e-47 |
| Msa1391110 | Msa1391240 | 0.957348 | 3.368435e-115 | -8.615850e-47 |
| Msa1391110 | Msa1394030 | 0.857000 | 2.198000e-62 | -8.615850e-47 |
| Msa1391110 | Msa1394040 | 0.822736 | 2.019981e-53 | -8.615850e-47 |
| Msa1391110 | Msa1394150 | 0.803701 | 3.074431e-49 | -8.615850e-47 |
| Msa1391110 | Msa1394160 | 0.845451 | 4.028000e-59 | -8.615850e-47 |
| Msa1391110 | Msa1394210 | 0.835975 | 1.226879e-56 | -8.615850e-47 |
| Msa1391110 | Msa1394250 | 0.802798 | 4.729466e-49 | -8.615850e-47 |
| Msa1391110 | Msa1460120 | 0.850929 | 1.235874e-60 | -8.615850e-47 |
| Msa1391110 | Msa1460130 | 0.855586 | 5.713100e-62 | -8.615850e-47 |
| Msa0126750 | Msa1391110 | 0.804392 | 2.208323e-49 | -8.615850e-47 |
| Msa0202640 | Msa1391110 | 0.835068 | 2.080986e-56 | -8.615850e-47 |
| Msa1305090 | Msa1391110 | 0.834868 | 2.336405e-56 | -8.615850e-47 |
| Msa1342040 | Msa1391110 | 0.809845 | 1.547225e-50 | -8.615850e-47 |
| Msa0370210 | Msa1391110 | 0.810816 | 9.548543e-51 | -8.615850e-47 |
| Msa0405420 | Msa1391110 | 0.837464 | 5.120231e-57 | -8.615850e-47 |
| Msa0405430 | Msa1391110 | 0.841798 | 3.818864e-58 | -8.615850e-47 |
| Msa0405440 | Msa1391110 | 0.910684 | 1.421709e-82 | -8.615850e-47 |
| Msa0405510 | Msa1391110 | 0.831597 | 1.525524e-55 | -8.615850e-47 |
| Msa0405520 | Msa1391110 | 0.827282 | 1.705067e-54 | -8.615850e-47 |
| Msa0405530 | Msa1391110 | 0.927899 | 6.168435e-92 | -8.615850e-47 |
| Msa0983630 | Msa1391110 | 0.863652 | 2.136250e-64 | -8.615850e-47 |
| Msa0983640 | Msa1391110 | 0.847500 | 1.111827e-59 | -8.615850e-47 |
| Msa1022050 | Msa1391110 | 0.890566 | 8.776761e-74 | -8.615850e-47 |
| Msa1022060 | Msa1391110 | 0.840355 | 9.140742e-58 | -8.615850e-47 |
| Msa1064410 | Msa1391110 | 0.861137 | 1.267164e-63 | -8.615850e-47 |
| Msa1086080 | Msa1391110 | 0.803450 | 3.465862e-49 | -8.615850e-47 |
| Msa1086090 | Msa1391110 | 0.834923 | 2.263664e-56 | -8.615850e-47 |
| Msa1086140 | Msa1391110 | 0.846286 | 2.389100e-59 | -8.615850e-47 |
| Msa1086190 | Msa1391110 | 0.815750 | 7.875968e-52 | -8.615850e-47 |
| Msa1086200 | Msa1391110 | 0.855433 | 6.331461e-62 | -8.615850e-47 |
| Msa1086270 | Msa1391110 | 0.833217 | 6.053208e-56 | -8.615850e-47 |
| Msa1086300 | Msa1391110 | 0.820724 | 5.897880e-53 | -8.615850e-47 |
| Msa1086320 | Msa1391110 | 0.819169 | 1.337447e-52 | -8.615850e-47 |
| Msa1086510 | Msa1391110 | 0.821261 | 4.434891e-53 | -8.615850e-47 |
| Msa1086550 | Msa1391110 | 0.834113 | 3.616266e-56 | -8.615850e-47 |
| Msa1086600 | Msa1391110 | 0.863645 | 2.147121e-64 | -8.615850e-47 |
| Msa1086660 | Msa1391110 | 0.802345 | 5.864180e-49 | -8.615850e-47 |
| Msa1086680 | Msa1391110 | 0.813778 | 2.154300e-51 | -8.615850e-47 |
| Msa1086720 | Msa1391110 | 0.855359 | 6.651544e-62 | -8.615850e-47 |
| Msa1086730 | Msa1391110 | 0.860287 | 2.294739e-63 | -8.615850e-47 |
| Msa1086740 | Msa1391110 | 0.945533 | 2.557771e-104 | -8.615850e-47 |
| Msa1086790 | Msa1391110 | 0.893172 | 8.050224e-75 | -8.615850e-47 |
| Msa1086800 | Msa1391110 | 0.862392 | 5.237158e-64 | -8.615850e-47 |
| Msa1086860 | Msa1391110 | 0.811280 | 7.575262e-51 | -8.615850e-47 |
| Msa1086890 | Msa1391110 | 0.804228 | 2.389647e-49 | -8.615850e-47 |
| Msa1086900 | Msa1391110 | 0.835166 | 1.965014e-56 | -8.615850e-47 |
| Msa1086960 | Msa1391110 | 0.912034 | 3.089467e-83 | -8.615850e-47 |
| Msa1086970 | Msa1391110 | 0.837024 | 6.634412e-57 | -8.615850e-47 |
| Msa1087030 | Msa1391110 | 0.855305 | 6.896439e-62 | -8.615850e-47 |
| Msa1087040 | Msa1391110 | 0.843125 | 1.697858e-58 | -8.615850e-47 |
| Msa1087050 | Msa1391110 | 0.938019 | 1.340633e-98 | -8.615850e-47 |
| Msa1087110 | Msa1391110 | 0.916862 | 1.068213e-85 | -8.615850e-47 |
| Msa1087120 | Msa1391110 | 0.826698 | 2.351665e-54 | -8.615850e-47 |
| Msa0263770 | Msa1391110 | 0.866807 | 2.175503e-65 | -8.615850e-47 |
| Msa0268190 | Msa1391110 | 0.812531 | 4.045407e-51 | -8.615850e-47 |
| Msa0268210 | Msa1391110 | 0.828645 | 8.011492e-55 | -8.615850e-47 |
| Msa0268250 | Msa1391110 | 0.842193 | 3.003360e-58 | -8.615850e-47 |
| Msa0268260 | Msa1391110 | 0.825194 | 5.352946e-54 | -8.615850e-47 |
| Msa0268270 | Msa1391110 | 0.926326 | 5.471327e-91 | -8.615850e-47 |
| Msa0268300 | Msa1391110 | 0.871099 | 8.841709e-67 | -8.615850e-47 |
| Msa0268310 | Msa1391110 | 0.822797 | 1.954452e-53 | -8.615850e-47 |
| Msa0268350 | Msa1391110 | 0.800875 | 1.173978e-48 | -8.615850e-47 |
| Msa0268430 | Msa1391110 | 0.827640 | 1.399509e-54 | -8.615850e-47 |
| Msa0268450 | Msa1391110 | 0.825984 | 3.479059e-54 | -8.615850e-47 |
| Msa0268560 | Msa1391110 | 0.802289 | 6.020285e-49 | -8.615850e-47 |
| Msa0268570 | Msa1391110 | 0.840751 | 7.200799e-58 | -8.615850e-47 |
| Msa0268630 | Msa1391110 | 0.837583 | 4.772462e-57 | -8.615850e-47 |
| Msa0268660 | Msa1391110 | 0.805249 | 1.462220e-49 | -8.615850e-47 |
| Msa0268670 | Msa1391110 | 0.818950 | 1.500184e-52 | -8.615850e-47 |
| Msa0268740 | Msa1391110 | 0.812364 | 4.399239e-51 | -8.615850e-47 |
| Msa0268750 | Msa1391110 | 0.844243 | 8.527330e-59 | -8.615850e-47 |
| Msa0268830 | Msa1391110 | 0.858995 | 5.616024e-63 | -8.615850e-47 |
| Msa0268840 | Msa1391110 | 0.804683 | 1.920230e-49 | -8.615850e-47 |
| Msa0268860 | Msa1391110 | 0.820563 | 6.421006e-53 | -8.615850e-47 |
| Msa0268880 | Msa1391110 | 0.806953 | 6.404295e-50 | -8.615850e-47 |
| Msa0268950 | Msa1391110 | 0.807338 | 5.306613e-50 | -8.615850e-47 |
| Msa0268960 | Msa1391110 | 0.850863 | 1.289617e-60 | -8.615850e-47 |
| Msa0269040 | Msa1391110 | 0.859227 | 4.784477e-63 | -8.615850e-47 |
| Msa0269050 | Msa1391110 | 0.800744 | 1.248492e-48 | -8.615850e-47 |
| Msa0269070 | Msa1391110 | 0.814539 | 1.463061e-51 | -8.615850e-47 |
| Msa0269130 | Msa1391110 | 0.830434 | 2.943660e-55 | -8.615850e-47 |
| Msa0269140 | Msa1391110 | 0.858059 | 1.067839e-62 | -8.615850e-47 |
| Msa0269150 | Msa1391110 | 0.957300 | 3.786149e-115 | -8.615850e-47 |
| Msa0344190 | Msa1391110 | 0.807501 | 4.901760e-50 | -8.615850e-47 |
| Msa0344310 | Msa1391110 | 0.830283 | 3.204300e-55 | -8.615850e-47 |
| Msa1143120 | Msa1391110 | 0.845809 | 3.221628e-59 | -8.615850e-47 |
| Msa1143170 | Msa1391110 | 0.828777 | 7.445194e-55 | -8.615850e-47 |
| Msa0484040 | Msa1391110 | 0.823288 | 1.501680e-53 | -8.615850e-47 |
| Msa0582510 | Msa1391110 | 0.848471 | 6.000641e-60 | -8.615850e-47 |
| Msa0582540 | Msa1391110 | 0.813533 | 2.439229e-51 | -8.615850e-47 |
| Msa0582640 | Msa1391110 | 0.809675 | 1.683053e-50 | -8.615850e-47 |
| Msa0582650 | Msa1391110 | 0.838412 | 2.920064e-57 | -8.615850e-47 |
| Msa0582690 | Msa1391110 | 0.854248 | 1.397202e-61 | -8.615850e-47 |
| Msa0582730 | Msa1391110 | 0.812065 | 5.113823e-51 | -8.615850e-47 |
| Msa0582760 | Msa1391110 | 0.810163 | 1.321140e-50 | -8.615850e-47 |
| Msa0582770 | Msa1391110 | 0.839984 | 1.142560e-57 | -8.615850e-47 |
| Msa0582810 | Msa1391110 | 0.857928 | 1.168000e-62 | -8.615850e-47 |
| Msa0582840 | Msa1391110 | 0.814466 | 1.518593e-51 | -8.615850e-47 |
| Msa0582910 | Msa1391110 | 0.819667 | 1.029817e-52 | -8.615850e-47 |
| Msa0582920 | Msa1391110 | 0.842836 | 2.027075e-58 | -8.615850e-47 |
| Msa0591270 | Msa1391110 | 0.814014 | 1.911342e-51 | -8.615850e-47 |
| Msa0591290 | Msa1391110 | 0.802783 | 4.762555e-49 | -8.615850e-47 |
| Msa0591310 | Msa1391110 | 0.849645 | 2.831922e-60 | -8.615850e-47 |
| Msa0591350 | Msa1391110 | 0.900373 | 7.819243e-78 | -8.615850e-47 |
| Msa0591360 | Msa1391110 | 0.845731 | 3.382606e-59 | -8.615850e-47 |
| Msa0591380 | Msa1391110 | 0.838602 | 2.608035e-57 | -8.615850e-47 |
| Msa0867680 | Msa1391110 | 0.874890 | 4.740640e-68 | -8.615850e-47 |
| Msa0867690 | Msa1391110 | 0.848258 | 6.872872e-60 | -8.615850e-47 |
| Msa0876520 | Msa1391110 | 0.856806 | 2.508301e-62 | -8.615850e-47 |
| Msa0908220 | Msa1391110 | 0.846204 | 2.515587e-59 | -8.615850e-47 |
| Msa0908230 | Msa1391110 | 0.868122 | 8.254241e-66 | -8.615850e-47 |
| Msa0908240 | Msa1391110 | 0.956307 | 4.019151e-114 | -8.615850e-47 |
| Msa0908310 | Msa1391110 | 0.894807 | 1.741671e-75 | -8.615850e-47 |
| Msa0908320 | Msa1391110 | 0.843377 | 1.455168e-58 | -8.615850e-47 |
| Msa0908370 | Msa1391110 | 0.872432 | 3.194775e-67 | -8.615850e-47 |
| Msa0908380 | Msa1391110 | 0.845194 | 4.728979e-59 | -8.615850e-47 |
| Msa0908430 | Msa1391110 | 0.851453 | 8.787428e-61 | -8.615850e-47 |
| Msa0908440 | Msa1391110 | 0.871868 | 4.923241e-67 | -8.615850e-47 |
| Msa0908450 | Msa1391110 | 0.950397 | 1.791252e-108 | -8.615850e-47 |
| Msa0908480 | Msa1391110 | 0.860877 | 1.520316e-63 | -8.615850e-47 |
| Msa0908530 | Msa1391110 | 0.899737 | 1.473365e-77 | -8.615850e-47 |
| Msa0908540 | Msa1391110 | 0.839565 | 1.468681e-57 | -8.615850e-47 |
| Msa0908590 | Msa1391110 | 0.834633 | 2.677674e-56 | -8.615850e-47 |
| Msa0908600 | Msa1391110 | 0.830526 | 2.794550e-55 | -8.615850e-47 |
| Msa0908610 | Msa1391110 | 0.930132 | 2.553115e-93 | -8.615850e-47 |
| Msa0908650 | Msa1391110 | 0.863205 | 2.939805e-64 | -8.615850e-47 |
| Msa0908660 | Msa1391110 | 0.822386 | 2.436053e-53 | -8.615850e-47 |
| Msa0908670 | Msa1391110 | 0.935579 | 6.789472e-97 | -8.615850e-47 |
| Msa0908720 | Msa1391110 | 0.884744 | 1.476302e-71 | -8.615850e-47 |
| Msa0908730 | Msa1391110 | 0.831808 | 1.353260e-55 | -8.615850e-47 |
| Msa0911190 | Msa1391110 | 0.897616 | 1.183009e-76 | -8.615850e-47 |
| Msa0911200 | Msa1391110 | 0.843389 | 1.444102e-58 | -8.615850e-47 |
| Msa0911230 | Msa1391110 | 0.886652 | 2.838912e-72 | -8.615850e-47 |
| Msa0924830 | Msa1391110 | 0.845362 | 4.259276e-59 | -8.615850e-47 |
| Msa0924870 | Msa1391110 | 0.803627 | 3.185319e-49 | -8.615850e-47 |
| Msa0924880 | Msa1391110 | 0.822904 | 1.845096e-53 | -8.615850e-47 |
| Msa0924920 | Msa1391110 | 0.875992 | 1.989081e-68 | -8.615850e-47 |
| Msa0924930 | Msa1391110 | 0.842371 | 2.693213e-58 | -8.615850e-47 |
| Msa0924940 | Msa1391110 | 0.859173 | 4.967695e-63 | -8.615850e-47 |
| Msa0925100 | Msa1391110 | 0.909099 | 8.280424e-82 | -8.615850e-47 |
| Msa0925110 | Msa1391110 | 0.874854 | 4.875426e-68 | -8.615850e-47 |
| Msa0931070 | Msa1391110 | 0.835720 | 1.424183e-56 | -8.615850e-47 |
| Msa0931110 | Msa1391110 | 0.804551 | 2.046440e-49 | -8.615850e-47 |
| Msa0931130 | Msa1391110 | 0.845324 | 4.359327e-59 | -8.615850e-47 |
| Msa0931160 | Msa1391110 | 0.804571 | 2.026194e-49 | -8.615850e-47 |
| Msa0931220 | Msa1391110 | 0.827190 | 1.794014e-54 | -8.615850e-47 |
| Msa0931230 | Msa1391110 | 0.834471 | 2.941240e-56 | -8.615850e-47 |
| Msa0931260 | Msa1391110 | 0.855187 | 7.466208e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391110 | MtrunA17_Chr7g0234981 | 88.636 | 88 | 10 | 0 | 70 | 157 | 6 | 93 | 2.85e-50 | 156 |
| Msa1391110 | MtrunA17_MTg0491661 | 67.470 | 83 | 27 | 0 | 75 | 157 | 41 | 123 | 8.51e-36 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391110 | ATCG00905.1 | 98.824 | 85 | 1 | 0 | 73 | 157 | 1 | 85 | 1.03e-55 | 170 |
| Msa1391110 | ATCG01230.1 | 98.824 | 85 | 1 | 0 | 73 | 157 | 1 | 85 | 1.03e-55 | 170 |
| Msa1391110 | AT2G07675.1 | 48.462 | 130 | 58 | 1 | 28 | 157 | 3 | 123 | 1.22e-34 | 118 |
| Msa1391110 | ATMG00980.1 | 48.462 | 130 | 58 | 1 | 28 | 157 | 3 | 123 | 1.22e-34 | 118 |
Find 39 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGCTAAAATAATTTATTT+TGG | 0.180484 | tig0021410:+24433 | None:intergenic |
| CAACAAGGTCGTTCTAAATA+TGG | 0.216871 | tig0021410:-24466 | Msa1391110:CDS |
| CAGAATGTTCTTGTAAATTA+TGG | 0.231614 | tig0021410:+24584 | None:intergenic |
| CTCGCCCCACAGCGACAAAA+TGG | 0.328779 | tig0021410:-25428 | Msa1391110:CDS |
| CCTTTACTCCGACAGCATCT+AGG | 0.372692 | tig0021410:+24494 | None:intergenic |
| ACTTTACGTAAGGCAGAGTT+TGG | 0.377633 | tig0021410:+24664 | None:intergenic |
| AACAAGGTCGTTCTAAATAT+GGG | 0.408379 | tig0021410:-24465 | Msa1391110:CDS |
| CATATTTAGAACGACCTTGT+TGG | 0.411865 | tig0021410:+24467 | None:intergenic |
| TTGTAAATTATGGCCAATAC+CGG | 0.438557 | tig0021410:+24594 | None:intergenic |
| CATTCTGTAGTCTTAGTAAG+AGG | 0.441296 | tig0021410:-24568 | Msa1391110:CDS |
| TATCACTACAACAAGCATAA+TGG | 0.443035 | tig0021410:-25634 | Msa1391110:intron |
| AACTCCAGTTACTTCGCAAA+TGG | 0.476097 | tig0021410:+25760 | None:intergenic |
| GCCAGAGTACGCTTAACCTC+TGG | 0.485872 | tig0021410:-24640 | Msa1391110:CDS |
| TCGCTGTGGGGCGAGGAGAA+AGG | 0.489722 | tig0021410:+25436 | None:intergenic |
| ACTGCTTATATACCCGGTAT+TGG | 0.491318 | tig0021410:-24607 | Msa1391110:CDS |
| GATCGTTGGCACAAGAAAGA+AGG | 0.502174 | tig0021410:+25786 | None:intergenic |
| CTTTACTCCGACAGCATCTA+GGG | 0.502834 | tig0021410:+24495 | None:intergenic |
| CCTAGATGCTGTCGGAGTAA+AGG | 0.506750 | tig0021410:-24494 | Msa1391110:CDS |
| TTCGCAAATGGTAAGATCGT+TGG | 0.515541 | tig0021410:+25772 | None:intergenic |
| AAATGGATAAATCAGAACTA+AGG | 0.516319 | tig0021410:-25828 | Msa1391110:CDS |
| AGAACTAAGGCAAGATGAGA+TGG | 0.530899 | tig0021410:-25815 | Msa1391110:CDS |
| TACTCTGGCAACTTTACGTA+AGG | 0.546111 | tig0021410:+24654 | None:intergenic |
| ATTCTGTAGTCTTAGTAAGA+GGG | 0.565369 | tig0021410:-24567 | Msa1391110:CDS |
| GGTTCTGTAGAGTGGCAGTA+AGG | 0.572203 | tig0021410:-24728 | Msa1391110:intron |
| TCCAGAGGTTAAGCGTACTC+TGG | 0.572579 | tig0021410:+24639 | None:intergenic |
| GAAATCACTGCTTATATACC+CGG | 0.578898 | tig0021410:-24613 | Msa1391110:CDS |
| GTGAGATATCACATTGTTCG+AGG | 0.586809 | tig0021410:-24520 | Msa1391110:CDS |
| ATCGTTGGCACAAGAAAGAA+GGG | 0.587101 | tig0021410:+25787 | None:intergenic |
| ACAGCGACAAAATGGAAGAC+TGG | 0.588097 | tig0021410:-25420 | Msa1391110:intron |
| TTCTGTAGTCTTAGTAAGAG+GGG | 0.592028 | tig0021410:-24566 | Msa1391110:CDS |
| GGAGTAAAGGATCGCCAACA+AGG | 0.599055 | tig0021410:-24481 | Msa1391110:CDS |
| TGTAAATTATGGCCAATACC+GGG | 0.601960 | tig0021410:+24595 | None:intergenic |
| CGAGGAACCCTAGATGCTGT+CGG | 0.617344 | tig0021410:-24502 | Msa1391110:CDS |
| AGCAGTGATTTCAAATCCAG+AGG | 0.620729 | tig0021410:+24624 | None:intergenic |
| GCGAGGAGAAAGGCAGCAAG+AGG | 0.621301 | tig0021410:+25446 | None:intergenic |
| ACAAGGTCGTTCTAAATATG+GGG | 0.627597 | tig0021410:-24464 | Msa1391110:CDS |
| GGAAGGGTTAAGGATTTACC+TGG | 0.642987 | tig0021410:-24544 | Msa1391110:CDS |
| TCTGTAGTCTTAGTAAGAGG+GGG | 0.664205 | tig0021410:-24565 | Msa1391110:CDS |
| ACAATGTGATATCTCACACC+AGG | 0.678462 | tig0021410:+24526 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | tig0021410:24591-24610 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | tig0021410:24592-24611 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | tig0021410:24595-24614 | Msa1391110:CDS | 10.0% |
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | tig0021410:24591-24610 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | tig0021410:24592-24611 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | tig0021410:24595-24614 | Msa1391110:CDS | 10.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | tig0021410:25031-25050 | Msa1391110:intron | 15.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | tig0021410:25031-25050 | Msa1391110:intron | 15.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | tig0021410:24773-24792 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | tig0021410:25392-25411 | Msa1391110:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | tig0021410:25437-25456 | Msa1391110:CDS | 20.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | tig0021410:24773-24792 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | tig0021410:25392-25411 | Msa1391110:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | tig0021410:25437-25456 | Msa1391110:CDS | 20.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | tig0021410:24550-24569 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | tig0021410:24551-24570 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | tig0021410:24671-24690 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | tig0021410:24672-24691 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | tig0021410:24673-24692 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | tig0021410:24774-24793 | Msa1391110:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | tig0021410:24779-24798 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | tig0021410:24916-24935 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | tig0021410:25139-25158 | Msa1391110:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | tig0021410:25215-25234 | Msa1391110:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | tig0021410:25216-25235 | Msa1391110:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | tig0021410:25283-25302 | Msa1391110:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | tig0021410:25293-25312 | Msa1391110:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | tig0021410:25356-25375 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | tig0021410:25438-25457 | Msa1391110:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | tig0021410:25492-25511 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | tig0021410:25692-25711 | None:intergenic | 25.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | tig0021410:24550-24569 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | tig0021410:24551-24570 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | tig0021410:24671-24690 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | tig0021410:24672-24691 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | tig0021410:24673-24692 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | tig0021410:24774-24793 | Msa1391110:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | tig0021410:24779-24798 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | tig0021410:24916-24935 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | tig0021410:25139-25158 | Msa1391110:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | tig0021410:25215-25234 | Msa1391110:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | tig0021410:25216-25235 | Msa1391110:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | tig0021410:25283-25302 | Msa1391110:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | tig0021410:25293-25312 | Msa1391110:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | tig0021410:25356-25375 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | tig0021410:25438-25457 | Msa1391110:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | tig0021410:25492-25511 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | tig0021410:25692-25711 | None:intergenic | 25.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | + | tig0021410:24545-24564 | None:intergenic | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | tig0021410:24585-24604 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | tig0021410:24639-24658 | Msa1391110:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | tig0021410:24716-24735 | Msa1391110:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | tig0021410:25272-25291 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | tig0021410:25273-25292 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | tig0021410:25271-25290 | Msa1391110:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | tig0021410:25288-25307 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | tig0021410:25286-25305 | Msa1391110:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | tig0021410:25292-25311 | Msa1391110:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | tig0021410:25682-25701 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | tig0021410:25706-25725 | Msa1391110:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | tig0021410:25808-25827 | Msa1391110:CDS | 30.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | + | tig0021410:24545-24564 | None:intergenic | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | tig0021410:24585-24604 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | tig0021410:24639-24658 | Msa1391110:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | tig0021410:24716-24735 | Msa1391110:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | tig0021410:25272-25291 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | tig0021410:25273-25292 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | tig0021410:25271-25290 | Msa1391110:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | tig0021410:25288-25307 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | tig0021410:25286-25305 | Msa1391110:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | tig0021410:25292-25311 | Msa1391110:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | tig0021410:25682-25701 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | tig0021410:25706-25725 | Msa1391110:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | tig0021410:25808-25827 | Msa1391110:CDS | 30.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | tig0021410:24584-24603 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | tig0021410:24703-24722 | Msa1391110:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | tig0021410:24709-24728 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | tig0021410:24807-24826 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | tig0021410:25070-25089 | Msa1391110:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | tig0021410:25098-25117 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | tig0021410:25270-25289 | Msa1391110:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | tig0021410:25494-25513 | Msa1391110:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | tig0021410:25522-25541 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | tig0021410:25524-25543 | Msa1391110:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | tig0021410:25592-25611 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | tig0021410:25602-25621 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | tig0021410:25603-25622 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | tig0021410:25660-25679 | Msa1391110:intron | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | tig0021410:25681-25700 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | tig0021410:25705-25724 | Msa1391110:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | tig0021410:25707-25726 | Msa1391110:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | tig0021410:25809-25828 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | tig0021410:25807-25826 | Msa1391110:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | tig0021410:25809-25828 | Msa1391110:CDS | 35.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | tig0021410:24584-24603 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | tig0021410:24703-24722 | Msa1391110:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | tig0021410:24709-24728 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | tig0021410:24807-24826 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | tig0021410:25070-25089 | Msa1391110:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | tig0021410:25098-25117 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | tig0021410:25270-25289 | Msa1391110:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | tig0021410:25494-25513 | Msa1391110:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | tig0021410:25522-25541 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | tig0021410:25524-25543 | Msa1391110:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | tig0021410:25592-25611 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | tig0021410:25602-25621 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | tig0021410:25603-25622 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | tig0021410:25660-25679 | Msa1391110:intron | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | tig0021410:25681-25700 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | tig0021410:25705-25724 | Msa1391110:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | tig0021410:25707-25726 | Msa1391110:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | tig0021410:25809-25828 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | tig0021410:25807-25826 | Msa1391110:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | tig0021410:25809-25828 | Msa1391110:CDS | 35.0% |
| AGAACTAAGGCAAGATGAGA+TGG | - | tig0021410:24458-24477 | Msa1391110:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | tig0021410:24489-24508 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | tig0021410:24504-24523 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | tig0021410:24509-24528 | Msa1391110:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | tig0021410:24516-24535 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | tig0021410:24583-24602 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | tig0021410:24702-24721 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | tig0021410:24756-24775 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | tig0021410:24760-24779 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | tig0021410:24881-24900 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | tig0021410:24880-24899 | Msa1391110:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | tig0021410:25228-25247 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | tig0021410:25249-25268 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | tig0021410:25442-25461 | Msa1391110:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | tig0021410:25601-25620 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | tig0021410:25612-25631 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | tig0021410:25622-25641 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | tig0021410:25652-25671 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | tig0021410:25666-25685 | Msa1391110:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | tig0021410:25708-25727 | Msa1391110:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | tig0021410:25750-25769 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | tig0021410:25753-25772 | Msa1391110:intron | 40.0% | |
| AGAACTAAGGCAAGATGAGA+TGG | - | tig0021410:24458-24477 | Msa1391110:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | tig0021410:24489-24508 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | tig0021410:24504-24523 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | tig0021410:24509-24528 | Msa1391110:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | tig0021410:24516-24535 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | tig0021410:24583-24602 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | tig0021410:24702-24721 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | tig0021410:24756-24775 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | tig0021410:24760-24779 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | tig0021410:24881-24900 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | tig0021410:24880-24899 | Msa1391110:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | tig0021410:25228-25247 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | tig0021410:25249-25268 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | tig0021410:25442-25461 | Msa1391110:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | tig0021410:25601-25620 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | tig0021410:25612-25631 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | tig0021410:25622-25641 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | tig0021410:25652-25671 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | tig0021410:25666-25685 | Msa1391110:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | tig0021410:25708-25727 | Msa1391110:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | tig0021410:25750-25769 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | tig0021410:25753-25772 | Msa1391110:intron | 40.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | tig0021410:24490-24509 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | tig0021410:24582-24601 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | tig0021410:24794-24813 | Msa1391110:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | tig0021410:24798-24817 | Msa1391110:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | tig0021410:24804-24823 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | tig0021410:24852-24871 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | tig0021410:24853-24872 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | tig0021410:24854-24873 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | tig0021410:24853-24872 | Msa1391110:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | tig0021410:25199-25218 | Msa1391110:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | tig0021410:25303-25322 | Msa1391110:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | tig0021410:25447-25466 | Msa1391110:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | tig0021410:25464-25483 | Msa1391110:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | tig0021410:25537-25556 | Msa1391110:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | tig0021410:25712-25731 | Msa1391110:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | tig0021410:25713-25732 | Msa1391110:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | tig0021410:25729-25748 | Msa1391110:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | tig0021410:25781-25800 | None:intergenic | 45.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | tig0021410:24490-24509 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | tig0021410:24582-24601 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | tig0021410:24794-24813 | Msa1391110:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | tig0021410:24798-24817 | Msa1391110:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | tig0021410:24804-24823 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | tig0021410:24852-24871 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | tig0021410:24853-24872 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | tig0021410:24854-24873 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | tig0021410:24853-24872 | Msa1391110:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | tig0021410:25199-25218 | Msa1391110:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | tig0021410:25303-25322 | Msa1391110:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | tig0021410:25447-25466 | Msa1391110:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | tig0021410:25464-25483 | Msa1391110:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | tig0021410:25537-25556 | Msa1391110:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | tig0021410:25712-25731 | Msa1391110:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | tig0021410:25713-25732 | Msa1391110:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | tig0021410:25729-25748 | Msa1391110:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | tig0021410:25781-25800 | None:intergenic | 45.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | tig0021410:24581-24600 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | tig0021410:25231-25250 | Msa1391110:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | tig0021410:25506-25525 | Msa1391110:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | tig0021410:25545-25564 | Msa1391110:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | tig0021410:25637-25656 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | tig0021410:25719-25738 | Msa1391110:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | tig0021410:25782-25801 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | tig0021410:25779-25798 | Msa1391110:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | tig0021410:25792-25811 | Msa1391110:CDS | 50.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | tig0021410:24581-24600 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | tig0021410:25231-25250 | Msa1391110:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | tig0021410:25506-25525 | Msa1391110:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | tig0021410:25545-25564 | Msa1391110:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | tig0021410:25637-25656 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | tig0021410:25719-25738 | Msa1391110:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | tig0021410:25782-25801 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | tig0021410:25779-25798 | Msa1391110:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | tig0021410:25792-25811 | Msa1391110:CDS | 50.0% | |
| !!! | ATTTTTCAGGGTCTCGGGGG+GGG | + | tig0021410:24579-24598 | None:intergenic | 55.0% |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | tig0021410:24580-24599 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | tig0021410:25181-25200 | Msa1391110:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | tig0021410:25182-25201 | Msa1391110:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | tig0021410:25190-25209 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | tig0021410:25633-25652 | Msa1391110:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | tig0021410:25771-25790 | Msa1391110:intron | 55.0% | |
| !!! | ATTTTTCAGGGTCTCGGGGG+GGG | + | tig0021410:24579-24598 | None:intergenic | 55.0% |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | tig0021410:24580-24599 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | tig0021410:25181-25200 | Msa1391110:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | tig0021410:25182-25201 | Msa1391110:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | tig0021410:25190-25209 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | tig0021410:25633-25652 | Msa1391110:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | tig0021410:25771-25790 | Msa1391110:intron | 55.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | tig0021410:24830-24849 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | tig0021410:24847-24866 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | tig0021410:24845-24864 | Msa1391110:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | tig0021410:25186-25205 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | tig0021410:25183-25202 | Msa1391110:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | tig0021410:25187-25206 | None:intergenic | 60.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | tig0021410:24830-24849 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | tig0021410:24847-24866 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | tig0021410:24845-24864 | Msa1391110:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | tig0021410:25186-25205 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | tig0021410:25183-25202 | Msa1391110:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | tig0021410:25187-25206 | None:intergenic | 60.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | tig0021410:24840-24859 | None:intergenic | 65.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | tig0021410:24840-24859 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021410 | gene | 24447 | 25848 | 24447 | ID=Msa1391110;Name=Msa1391110 |
| tig0021410 | mRNA | 24447 | 25848 | 24447 | ID=Msa1391110-mRNA-1;Parent=Msa1391110;Name=Msa1391110-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.75|1|1|4|0|157 |
| tig0021410 | exon | 25772 | 25848 | 25772 | ID=Msa1391110-mRNA-1:exon:12550;Parent=Msa1391110-mRNA-1 |
| tig0021410 | exon | 25635 | 25678 | 25635 | ID=Msa1391110-mRNA-1:exon:12549;Parent=Msa1391110-mRNA-1 |
| tig0021410 | exon | 25421 | 25479 | 25421 | ID=Msa1391110-mRNA-1:exon:12548;Parent=Msa1391110-mRNA-1 |
| tig0021410 | exon | 24447 | 24740 | 24447 | ID=Msa1391110-mRNA-1:exon:12547;Parent=Msa1391110-mRNA-1 |
| tig0021410 | CDS | 25772 | 25848 | 25772 | ID=Msa1391110-mRNA-1:cds;Parent=Msa1391110-mRNA-1 |
| tig0021410 | CDS | 25635 | 25678 | 25635 | ID=Msa1391110-mRNA-1:cds;Parent=Msa1391110-mRNA-1 |
| tig0021410 | CDS | 25421 | 25479 | 25421 | ID=Msa1391110-mRNA-1:cds;Parent=Msa1391110-mRNA-1 |
| tig0021410 | CDS | 24447 | 24740 | 24447 | ID=Msa1391110-mRNA-1:cds;Parent=Msa1391110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
