Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391240 | AES69829.1 | 75.145 | 173 | 12 | 2 | 1 | 150 | 1 | 165 | 2.67e-75 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391240 | sp|A4GYN8|RR12B_POPTR | 95.876 | 97 | 4 | 0 | 61 | 157 | 39 | 135 | 3.89e-61 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391240 | G7J101 | 75.145 | 173 | 12 | 2 | 1 | 150 | 1 | 165 | 1.28e-75 | 251 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095150 | Msa1391240 | 0.807824 | 4.185578e-50 | -8.615850e-47 |
| Msa0095230 | Msa1391240 | 0.806682 | 7.306239e-50 | -8.615850e-47 |
| Msa1354420 | Msa1391240 | 0.898393 | 5.542760e-77 | -8.615850e-47 |
| Msa1354430 | Msa1391240 | 0.848212 | 7.075921e-60 | -8.615850e-47 |
| Msa1354480 | Msa1391240 | 0.854127 | 1.513379e-61 | -8.615850e-47 |
| Msa1354490 | Msa1391240 | 0.861677 | 8.672060e-64 | -8.615850e-47 |
| Msa1354500 | Msa1391240 | 0.948376 | 1.066422e-106 | -8.615850e-47 |
| Msa1354550 | Msa1391240 | 0.901627 | 2.211744e-78 | -8.615850e-47 |
| Msa1354560 | Msa1391240 | 0.835022 | 2.137566e-56 | -8.615850e-47 |
| Msa1354610 | Msa1391240 | 0.880335 | 5.977214e-70 | -8.615850e-47 |
| Msa1354620 | Msa1391240 | 0.882552 | 9.466913e-71 | -8.615850e-47 |
| Msa1354630 | Msa1391240 | 0.955133 | 6.102222e-113 | -8.615850e-47 |
| Msa1354680 | Msa1391240 | 0.918414 | 1.605399e-86 | -8.615850e-47 |
| Msa1354690 | Msa1391240 | 0.881317 | 2.653578e-70 | -8.615850e-47 |
| Msa1354700 | Msa1391240 | 0.827260 | 1.725522e-54 | -8.615850e-47 |
| Msa1354740 | Msa1391240 | 0.865644 | 5.083887e-65 | -8.615850e-47 |
| Msa1354750 | Msa1391240 | 0.864567 | 1.108117e-64 | -8.615850e-47 |
| Msa1354760 | Msa1391240 | 0.948255 | 1.355995e-106 | -8.615850e-47 |
| Msa1354810 | Msa1391240 | 0.904111 | 1.725992e-79 | -8.615850e-47 |
| Msa1354820 | Msa1391240 | 0.857057 | 2.115468e-62 | -8.615850e-47 |
| Msa1354910 | Msa1391240 | 0.803560 | 3.289490e-49 | -8.615850e-47 |
| Msa1354920 | Msa1391240 | 0.844187 | 8.831566e-59 | -8.615850e-47 |
| Msa1354980 | Msa1391240 | 0.897459 | 1.377841e-76 | -8.615850e-47 |
| Msa1354990 | Msa1391240 | 0.866581 | 2.568773e-65 | -8.615850e-47 |
| Msa1355080 | Msa1391240 | 0.812384 | 4.357068e-51 | -8.615850e-47 |
| Msa1355090 | Msa1391240 | 0.829941 | 3.883164e-55 | -8.615850e-47 |
| Msa1365890 | Msa1391240 | 0.885932 | 5.307301e-72 | -8.615850e-47 |
| Msa1365900 | Msa1391240 | 0.838610 | 2.596096e-57 | -8.615850e-47 |
| Msa1365950 | Msa1391240 | 0.868639 | 5.624895e-66 | -8.615850e-47 |
| Msa1365960 | Msa1391240 | 0.821680 | 3.548987e-53 | -8.615850e-47 |
| Msa1365970 | Msa1391240 | 0.932877 | 4.399318e-95 | -8.615850e-47 |
| Msa1366080 | Msa1391240 | 0.900380 | 7.762760e-78 | -8.615850e-47 |
| Msa1366090 | Msa1391240 | 0.830964 | 2.182841e-55 | -8.615850e-47 |
| Msa1368230 | Msa1391240 | 0.868390 | 6.767343e-66 | -8.615850e-47 |
| Msa1368240 | Msa1391240 | 0.932356 | 9.628609e-95 | -8.615850e-47 |
| Msa1380610 | Msa1391240 | 0.810287 | 1.242336e-50 | -8.615850e-47 |
| Msa1385410 | Msa1391240 | 0.874892 | 4.735116e-68 | -8.615850e-47 |
| Msa1385420 | Msa1391240 | 0.828794 | 7.375019e-55 | -8.615850e-47 |
| Msa1391090 | Msa1391240 | 0.826942 | 2.056106e-54 | -8.615850e-47 |
| Msa1391100 | Msa1391240 | 0.856546 | 2.990628e-62 | -8.615850e-47 |
| Msa1391110 | Msa1391240 | 0.957348 | 3.368435e-115 | -8.615850e-47 |
| Msa1391160 | Msa1391240 | 0.859187 | 4.917765e-63 | -8.615850e-47 |
| Msa1391170 | Msa1391240 | 0.857446 | 1.623592e-62 | -8.615850e-47 |
| Msa1391220 | Msa1391240 | 0.842861 | 1.996391e-58 | -8.615850e-47 |
| Msa1391230 | Msa1391240 | 0.846145 | 2.610681e-59 | -8.615850e-47 |
| Msa1391240 | Msa1394030 | 0.849085 | 4.054574e-60 | -8.615850e-47 |
| Msa1391240 | Msa1394040 | 0.824176 | 9.301594e-54 | -8.615850e-47 |
| Msa1391240 | Msa1394080 | 0.802048 | 6.748456e-49 | -8.615850e-47 |
| Msa1391240 | Msa1394150 | 0.808120 | 3.620956e-50 | -8.615850e-47 |
| Msa1391240 | Msa1394160 | 0.826299 | 2.927584e-54 | -8.615850e-47 |
| Msa1391240 | Msa1394210 | 0.835700 | 1.440059e-56 | -8.615850e-47 |
| Msa1391240 | Msa1460120 | 0.866771 | 2.234011e-65 | -8.615850e-47 |
| Msa1391240 | Msa1460130 | 0.858314 | 8.969484e-63 | -8.615850e-47 |
| Msa0202640 | Msa1391240 | 0.831538 | 1.577664e-55 | -8.615850e-47 |
| Msa1305090 | Msa1391240 | 0.837381 | 5.375735e-57 | -8.615850e-47 |
| Msa1342040 | Msa1391240 | 0.810424 | 1.160828e-50 | -8.615850e-47 |
| Msa0370210 | Msa1391240 | 0.826717 | 2.327059e-54 | -8.615850e-47 |
| Msa0405420 | Msa1391240 | 0.848630 | 5.422082e-60 | -8.615850e-47 |
| Msa0405430 | Msa1391240 | 0.863343 | 2.663946e-64 | -8.615850e-47 |
| Msa0405440 | Msa1391240 | 0.914231 | 2.443399e-84 | -8.615850e-47 |
| Msa0405510 | Msa1391240 | 0.846944 | 1.579241e-59 | -8.615850e-47 |
| Msa0405520 | Msa1391240 | 0.835922 | 1.265352e-56 | -8.615850e-47 |
| Msa0405530 | Msa1391240 | 0.925263 | 2.326099e-90 | -8.615850e-47 |
| Msa0983630 | Msa1391240 | 0.886172 | 4.308621e-72 | -8.615850e-47 |
| Msa0983640 | Msa1391240 | 0.842450 | 2.567292e-58 | -8.615850e-47 |
| Msa1022050 | Msa1391240 | 0.909655 | 4.480369e-82 | -8.615850e-47 |
| Msa1022060 | Msa1391240 | 0.841244 | 5.345155e-58 | -8.615850e-47 |
| Msa1064410 | Msa1391240 | 0.857645 | 1.417597e-62 | -8.615850e-47 |
| Msa1086080 | Msa1391240 | 0.801023 | 1.095033e-48 | -8.615850e-47 |
| Msa1086090 | Msa1391240 | 0.828740 | 7.597616e-55 | -8.615850e-47 |
| Msa1086140 | Msa1391240 | 0.831478 | 1.631866e-55 | -8.615850e-47 |
| Msa1086190 | Msa1391240 | 0.809943 | 1.473768e-50 | -8.615850e-47 |
| Msa1086200 | Msa1391240 | 0.848951 | 4.418482e-60 | -8.615850e-47 |
| Msa1086270 | Msa1391240 | 0.823770 | 1.157992e-53 | -8.615850e-47 |
| Msa1086300 | Msa1391240 | 0.801971 | 6.998919e-49 | -8.615850e-47 |
| Msa1086320 | Msa1391240 | 0.835411 | 1.704852e-56 | -8.615850e-47 |
| Msa1086510 | Msa1391240 | 0.815966 | 7.051570e-52 | -8.615850e-47 |
| Msa1086550 | Msa1391240 | 0.835963 | 1.235591e-56 | -8.615850e-47 |
| Msa1086590 | Msa1391240 | 0.808173 | 3.527865e-50 | -8.615850e-47 |
| Msa1086600 | Msa1391240 | 0.861255 | 1.166741e-63 | -8.615850e-47 |
| Msa1086680 | Msa1391240 | 0.825189 | 5.368509e-54 | -8.615850e-47 |
| Msa1086720 | Msa1391240 | 0.860982 | 1.412582e-63 | -8.615850e-47 |
| Msa1086730 | Msa1391240 | 0.863136 | 3.087735e-64 | -8.615850e-47 |
| Msa1086740 | Msa1391240 | 0.933587 | 1.495814e-95 | -8.615850e-47 |
| Msa1086790 | Msa1391240 | 0.911331 | 6.862855e-83 | -8.615850e-47 |
| Msa1086800 | Msa1391240 | 0.868624 | 5.684421e-66 | -8.615850e-47 |
| Msa1086890 | Msa1391240 | 0.801110 | 1.050912e-48 | -8.615850e-47 |
| Msa1086900 | Msa1391240 | 0.835165 | 1.966197e-56 | -8.615850e-47 |
| Msa1086960 | Msa1391240 | 0.916365 | 1.944541e-85 | -8.615850e-47 |
| Msa1086970 | Msa1391240 | 0.843813 | 1.112000e-58 | -8.615850e-47 |
| Msa1087030 | Msa1391240 | 0.862939 | 3.551559e-64 | -8.615850e-47 |
| Msa1087040 | Msa1391240 | 0.854788 | 9.746950e-62 | -8.615850e-47 |
| Msa1087050 | Msa1391240 | 0.934410 | 4.218266e-96 | -8.615850e-47 |
| Msa1087110 | Msa1391240 | 0.921484 | 3.372769e-88 | -8.615850e-47 |
| Msa1087120 | Msa1391240 | 0.841646 | 4.188887e-58 | -8.615850e-47 |
| Msa0263770 | Msa1391240 | 0.889185 | 3.038128e-73 | -8.615850e-47 |
| Msa0268190 | Msa1391240 | 0.802057 | 6.720680e-49 | -8.615850e-47 |
| Msa0268210 | Msa1391240 | 0.839415 | 1.606823e-57 | -8.615850e-47 |
| Msa0268250 | Msa1391240 | 0.847920 | 8.519022e-60 | -8.615850e-47 |
| Msa0268260 | Msa1391240 | 0.841523 | 4.513262e-58 | -8.615850e-47 |
| Msa0268270 | Msa1391240 | 0.920382 | 1.373782e-87 | -8.615850e-47 |
| Msa0268300 | Msa1391240 | 0.877114 | 8.144565e-69 | -8.615850e-47 |
| Msa0268310 | Msa1391240 | 0.833591 | 4.884536e-56 | -8.615850e-47 |
| Msa0268430 | Msa1391240 | 0.814394 | 1.575549e-51 | -8.615850e-47 |
| Msa0268450 | Msa1391240 | 0.821527 | 3.850894e-53 | -8.615850e-47 |
| Msa0268560 | Msa1391240 | 0.805142 | 1.539884e-49 | -8.615850e-47 |
| Msa0268570 | Msa1391240 | 0.825629 | 4.223807e-54 | -8.615850e-47 |
| Msa0268630 | Msa1391240 | 0.833617 | 4.811654e-56 | -8.615850e-47 |
| Msa0268670 | Msa1391240 | 0.813088 | 3.054764e-51 | -8.615850e-47 |
| Msa0268740 | Msa1391240 | 0.813643 | 2.306815e-51 | -8.615850e-47 |
| Msa0268750 | Msa1391240 | 0.836419 | 9.465087e-57 | -8.615850e-47 |
| Msa0268830 | Msa1391240 | 0.859923 | 2.954581e-63 | -8.615850e-47 |
| Msa0268860 | Msa1391240 | 0.809704 | 1.658890e-50 | -8.615850e-47 |
| Msa0268880 | Msa1391240 | 0.816896 | 4.366567e-52 | -8.615850e-47 |
| Msa0268950 | Msa1391240 | 0.808060 | 3.728832e-50 | -8.615850e-47 |
| Msa0268960 | Msa1391240 | 0.838718 | 2.434012e-57 | -8.615850e-47 |
| Msa0269040 | Msa1391240 | 0.846064 | 2.745597e-59 | -8.615850e-47 |
| Msa0269070 | Msa1391240 | 0.805013 | 1.638666e-49 | -8.615850e-47 |
| Msa0269130 | Msa1391240 | 0.818160 | 2.266249e-52 | -8.615850e-47 |
| Msa0269140 | Msa1391240 | 0.869392 | 3.205773e-66 | -8.615850e-47 |
| Msa0269150 | Msa1391240 | 0.950770 | 8.276000e-109 | -8.615850e-47 |
| Msa0344190 | Msa1391240 | 0.813427 | 2.574465e-51 | -8.615850e-47 |
| Msa0344310 | Msa1391240 | 0.829610 | 4.674647e-55 | -8.615850e-47 |
| Msa1143120 | Msa1391240 | 0.845995 | 2.867772e-59 | -8.615850e-47 |
| Msa1143170 | Msa1391240 | 0.821697 | 3.518532e-53 | -8.615850e-47 |
| Msa0484040 | Msa1391240 | 0.830263 | 3.240705e-55 | -8.615850e-47 |
| Msa0582510 | Msa1391240 | 0.849192 | 3.787002e-60 | -8.615850e-47 |
| Msa0582640 | Msa1391240 | 0.811544 | 6.640225e-51 | -8.615850e-47 |
| Msa0582650 | Msa1391240 | 0.821419 | 4.077685e-53 | -8.615850e-47 |
| Msa0582690 | Msa1391240 | 0.847530 | 1.090806e-59 | -8.615850e-47 |
| Msa0582730 | Msa1391240 | 0.804667 | 1.934896e-49 | -8.615850e-47 |
| Msa0582760 | Msa1391240 | 0.818869 | 1.565143e-52 | -8.615850e-47 |
| Msa0582770 | Msa1391240 | 0.825967 | 3.510871e-54 | -8.615850e-47 |
| Msa0582810 | Msa1391240 | 0.848237 | 6.963972e-60 | -8.615850e-47 |
| Msa0582840 | Msa1391240 | 0.818388 | 2.012052e-52 | -8.615850e-47 |
| Msa0582910 | Msa1391240 | 0.804476 | 2.121361e-49 | -8.615850e-47 |
| Msa0582920 | Msa1391240 | 0.836797 | 7.580505e-57 | -8.615850e-47 |
| Msa0591270 | Msa1391240 | 0.826853 | 2.159393e-54 | -8.615850e-47 |
| Msa0591290 | Msa1391240 | 0.824090 | 9.742858e-54 | -8.615850e-47 |
| Msa0591310 | Msa1391240 | 0.861707 | 8.490241e-64 | -8.615850e-47 |
| Msa0591350 | Msa1391240 | 0.909174 | 7.623754e-82 | -8.615850e-47 |
| Msa0591360 | Msa1391240 | 0.836369 | 9.741008e-57 | -8.615850e-47 |
| Msa0591380 | Msa1391240 | 0.833884 | 4.126268e-56 | -8.615850e-47 |
| Msa0867680 | Msa1391240 | 0.876070 | 1.869763e-68 | -8.615850e-47 |
| Msa0867690 | Msa1391240 | 0.850509 | 1.621386e-60 | -8.615850e-47 |
| Msa0876520 | Msa1391240 | 0.866110 | 3.623144e-65 | -8.615850e-47 |
| Msa0908220 | Msa1391240 | 0.860053 | 2.699382e-63 | -8.615850e-47 |
| Msa0908230 | Msa1391240 | 0.868406 | 6.685722e-66 | -8.615850e-47 |
| Msa0908240 | Msa1391240 | 0.948669 | 5.965388e-107 | -8.615850e-47 |
| Msa0908310 | Msa1391240 | 0.898145 | 7.068521e-77 | -8.615850e-47 |
| Msa0908320 | Msa1391240 | 0.850136 | 2.064136e-60 | -8.615850e-47 |
| Msa0908370 | Msa1391240 | 0.891039 | 5.714178e-74 | -8.615850e-47 |
| Msa0908380 | Msa1391240 | 0.847271 | 1.285360e-59 | -8.615850e-47 |
| Msa0908430 | Msa1391240 | 0.866309 | 3.134015e-65 | -8.615850e-47 |
| Msa0908440 | Msa1391240 | 0.877230 | 7.422322e-69 | -8.615850e-47 |
| Msa0908450 | Msa1391240 | 0.939586 | 9.902269e-100 | -8.615850e-47 |
| Msa0908480 | Msa1391240 | 0.858654 | 7.101392e-63 | -8.615850e-47 |
| Msa0908530 | Msa1391240 | 0.909681 | 4.350925e-82 | -8.615850e-47 |
| Msa0908540 | Msa1391240 | 0.856035 | 4.224106e-62 | -8.615850e-47 |
| Msa0908590 | Msa1391240 | 0.842742 | 2.147484e-58 | -8.615850e-47 |
| Msa0908600 | Msa1391240 | 0.831224 | 1.883854e-55 | -8.615850e-47 |
| Msa0908610 | Msa1391240 | 0.926034 | 8.154168e-91 | -8.615850e-47 |
| Msa0908650 | Msa1391240 | 0.843439 | 1.400147e-58 | -8.615850e-47 |
| Msa0908660 | Msa1391240 | 0.837512 | 4.977111e-57 | -8.615850e-47 |
| Msa0908670 | Msa1391240 | 0.940578 | 1.836576e-100 | -8.615850e-47 |
| Msa0908720 | Msa1391240 | 0.893493 | 5.971275e-75 | -8.615850e-47 |
| Msa0908730 | Msa1391240 | 0.853795 | 1.886157e-61 | -8.615850e-47 |
| Msa0911190 | Msa1391240 | 0.908439 | 1.707557e-81 | -8.615850e-47 |
| Msa0911200 | Msa1391240 | 0.858146 | 1.006505e-62 | -8.615850e-47 |
| Msa0911230 | Msa1391240 | 0.879742 | 9.719522e-70 | -8.615850e-47 |
| Msa0924830 | Msa1391240 | 0.851531 | 8.354422e-61 | -8.615850e-47 |
| Msa0924870 | Msa1391240 | 0.805217 | 1.484991e-49 | -8.615850e-47 |
| Msa0924880 | Msa1391240 | 0.828957 | 6.735505e-55 | -8.615850e-47 |
| Msa0924920 | Msa1391240 | 0.870881 | 1.043632e-66 | -8.615850e-47 |
| Msa0924930 | Msa1391240 | 0.856080 | 4.095731e-62 | -8.615850e-47 |
| Msa0924940 | Msa1391240 | 0.862966 | 3.484520e-64 | -8.615850e-47 |
| Msa0925100 | Msa1391240 | 0.919462 | 4.367945e-87 | -8.615850e-47 |
| Msa0925110 | Msa1391240 | 0.868086 | 8.475615e-66 | -8.615850e-47 |
| Msa0931070 | Msa1391240 | 0.837283 | 5.696908e-57 | -8.615850e-47 |
| Msa0931110 | Msa1391240 | 0.801466 | 8.886054e-49 | -8.615850e-47 |
| Msa0931130 | Msa1391240 | 0.832679 | 8.236682e-56 | -8.615850e-47 |
| Msa0931190 | Msa1391240 | 0.802061 | 6.708892e-49 | -8.615850e-47 |
| Msa0931220 | Msa1391240 | 0.815311 | 9.863946e-52 | -8.615850e-47 |
| Msa0931230 | Msa1391240 | 0.831859 | 1.314204e-55 | -8.615850e-47 |
| Msa0931260 | Msa1391240 | 0.848945 | 4.435783e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391240 | MtrunA17_Chr7g0234981 | 88.636 | 88 | 10 | 0 | 70 | 157 | 6 | 93 | 2.85e-50 | 156 |
| Msa1391240 | MtrunA17_MTg0491661 | 67.470 | 83 | 27 | 0 | 75 | 157 | 41 | 123 | 8.51e-36 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391240 | ATCG00905.1 | 98.824 | 85 | 1 | 0 | 73 | 157 | 1 | 85 | 1.03e-55 | 170 |
| Msa1391240 | ATCG01230.1 | 98.824 | 85 | 1 | 0 | 73 | 157 | 1 | 85 | 1.03e-55 | 170 |
| Msa1391240 | AT2G07675.1 | 48.462 | 130 | 58 | 1 | 28 | 157 | 3 | 123 | 1.22e-34 | 118 |
| Msa1391240 | ATMG00980.1 | 48.462 | 130 | 58 | 1 | 28 | 157 | 3 | 123 | 1.22e-34 | 118 |
Find 39 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGCTAAAATAATTTATTT+TGG | 0.180484 | tig0021410:+106714 | None:intergenic |
| CAACAAGGTCGTTCTAAATA+TGG | 0.216871 | tig0021410:-106747 | Msa1391240:CDS |
| CAGAATGTTCTTGTAAATTA+TGG | 0.231614 | tig0021410:+106865 | None:intergenic |
| CTCGCCCCACAGCGACAAAA+TGG | 0.328779 | tig0021410:-107709 | Msa1391240:CDS |
| CCTTTACTCCGACAGCATCT+AGG | 0.372692 | tig0021410:+106775 | None:intergenic |
| ACTTTACGTAAGGCAGAGTT+TGG | 0.377633 | tig0021410:+106945 | None:intergenic |
| AACAAGGTCGTTCTAAATAT+GGG | 0.408379 | tig0021410:-106746 | Msa1391240:CDS |
| CATATTTAGAACGACCTTGT+TGG | 0.411865 | tig0021410:+106748 | None:intergenic |
| TTGTAAATTATGGCCAATAC+CGG | 0.438557 | tig0021410:+106875 | None:intergenic |
| CATTCTGTAGTCTTAGTAAG+AGG | 0.441296 | tig0021410:-106849 | Msa1391240:CDS |
| TATCACTACAACAAGCATAA+TGG | 0.443035 | tig0021410:-107915 | Msa1391240:intron |
| AACTCCAGTTACTTCGCAAA+TGG | 0.476097 | tig0021410:+108040 | None:intergenic |
| GCCAGAGTACGCTTAACCTC+TGG | 0.485872 | tig0021410:-106921 | Msa1391240:CDS |
| TCGCTGTGGGGCGAGGAGAA+AGG | 0.489722 | tig0021410:+107717 | None:intergenic |
| ACTGCTTATATACCCGGTAT+TGG | 0.491318 | tig0021410:-106888 | Msa1391240:CDS |
| GATCGTTGGCACAAGAAAGA+AGG | 0.502174 | tig0021410:+108066 | None:intergenic |
| CTTTACTCCGACAGCATCTA+GGG | 0.502834 | tig0021410:+106776 | None:intergenic |
| CCTAGATGCTGTCGGAGTAA+AGG | 0.506750 | tig0021410:-106775 | Msa1391240:CDS |
| TTCGCAAATGGTAAGATCGT+TGG | 0.515541 | tig0021410:+108052 | None:intergenic |
| AAATGGATAAATCAGAACTA+AGG | 0.516319 | tig0021410:-108108 | Msa1391240:CDS |
| AGAACTAAGGCAAGATGAGA+TGG | 0.530899 | tig0021410:-108095 | Msa1391240:CDS |
| TACTCTGGCAACTTTACGTA+AGG | 0.546111 | tig0021410:+106935 | None:intergenic |
| ATTCTGTAGTCTTAGTAAGA+GGG | 0.565369 | tig0021410:-106848 | Msa1391240:CDS |
| GGTTCTGTAGAGTGGCAGTA+AGG | 0.572203 | tig0021410:-107009 | Msa1391240:intron |
| TCCAGAGGTTAAGCGTACTC+TGG | 0.572579 | tig0021410:+106920 | None:intergenic |
| GAAATCACTGCTTATATACC+CGG | 0.578898 | tig0021410:-106894 | Msa1391240:CDS |
| GTGAGATATCACATTGTTCG+AGG | 0.586809 | tig0021410:-106801 | Msa1391240:CDS |
| ATCGTTGGCACAAGAAAGAA+GGG | 0.587101 | tig0021410:+108067 | None:intergenic |
| ACAGCGACAAAATGGAAGAC+TGG | 0.588097 | tig0021410:-107701 | Msa1391240:intron |
| TTCTGTAGTCTTAGTAAGAG+GGG | 0.592028 | tig0021410:-106847 | Msa1391240:CDS |
| GGAGTAAAGGATCGCCAACA+AGG | 0.599055 | tig0021410:-106762 | Msa1391240:CDS |
| TGTAAATTATGGCCAATACC+GGG | 0.601960 | tig0021410:+106876 | None:intergenic |
| CGAGGAACCCTAGATGCTGT+CGG | 0.617344 | tig0021410:-106783 | Msa1391240:CDS |
| AGCAGTGATTTCAAATCCAG+AGG | 0.620729 | tig0021410:+106905 | None:intergenic |
| GCGAGGAGAAAGGCAGCAAG+AGG | 0.621301 | tig0021410:+107727 | None:intergenic |
| ACAAGGTCGTTCTAAATATG+GGG | 0.627597 | tig0021410:-106745 | Msa1391240:CDS |
| GGAAGGGTTAAGGATTTACC+TGG | 0.642987 | tig0021410:-106825 | Msa1391240:CDS |
| TCTGTAGTCTTAGTAAGAGG+GGG | 0.664205 | tig0021410:-106846 | Msa1391240:CDS |
| ACAATGTGATATCTCACACC+AGG | 0.678462 | tig0021410:+106807 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | tig0021410:106871-106890 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | tig0021410:106872-106891 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | tig0021410:106875-106894 | Msa1391240:CDS | 10.0% |
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | tig0021410:106871-106890 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | tig0021410:106872-106891 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | tig0021410:106875-106894 | Msa1391240:CDS | 10.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | tig0021410:107311-107330 | Msa1391240:intron | 15.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | tig0021410:107311-107330 | Msa1391240:intron | 15.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | tig0021410:107053-107072 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | tig0021410:107672-107691 | Msa1391240:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | tig0021410:107717-107736 | Msa1391240:CDS | 20.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | tig0021410:107053-107072 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | tig0021410:107672-107691 | Msa1391240:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | tig0021410:107717-107736 | Msa1391240:CDS | 20.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | tig0021410:106831-106850 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | tig0021410:106832-106851 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | tig0021410:106951-106970 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | tig0021410:106952-106971 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | tig0021410:106953-106972 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | tig0021410:107054-107073 | Msa1391240:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | tig0021410:107059-107078 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | tig0021410:107196-107215 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | tig0021410:107419-107438 | Msa1391240:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | tig0021410:107495-107514 | Msa1391240:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | tig0021410:107496-107515 | Msa1391240:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | tig0021410:107563-107582 | Msa1391240:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | tig0021410:107573-107592 | Msa1391240:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | tig0021410:107636-107655 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | tig0021410:107718-107737 | Msa1391240:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | tig0021410:107772-107791 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | tig0021410:107972-107991 | None:intergenic | 25.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | tig0021410:106831-106850 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | tig0021410:106832-106851 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | tig0021410:106951-106970 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | tig0021410:106952-106971 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | tig0021410:106953-106972 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | tig0021410:107054-107073 | Msa1391240:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | tig0021410:107059-107078 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | tig0021410:107196-107215 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | tig0021410:107419-107438 | Msa1391240:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | tig0021410:107495-107514 | Msa1391240:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | tig0021410:107496-107515 | Msa1391240:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | tig0021410:107563-107582 | Msa1391240:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | tig0021410:107573-107592 | Msa1391240:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | tig0021410:107636-107655 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | tig0021410:107718-107737 | Msa1391240:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | tig0021410:107772-107791 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | tig0021410:107972-107991 | None:intergenic | 25.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | + | tig0021410:106826-106845 | None:intergenic | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | tig0021410:106865-106884 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | tig0021410:106919-106938 | Msa1391240:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | tig0021410:106996-107015 | Msa1391240:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | tig0021410:107552-107571 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | tig0021410:107553-107572 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | tig0021410:107551-107570 | Msa1391240:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | tig0021410:107568-107587 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | tig0021410:107566-107585 | Msa1391240:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | tig0021410:107572-107591 | Msa1391240:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | tig0021410:107962-107981 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | tig0021410:107986-108005 | Msa1391240:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | tig0021410:108088-108107 | Msa1391240:CDS | 30.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | + | tig0021410:106826-106845 | None:intergenic | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | tig0021410:106865-106884 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | tig0021410:106919-106938 | Msa1391240:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | tig0021410:106996-107015 | Msa1391240:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | tig0021410:107552-107571 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | tig0021410:107553-107572 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | tig0021410:107551-107570 | Msa1391240:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | tig0021410:107568-107587 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | tig0021410:107566-107585 | Msa1391240:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | tig0021410:107572-107591 | Msa1391240:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | tig0021410:107962-107981 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | tig0021410:107986-108005 | Msa1391240:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | tig0021410:108088-108107 | Msa1391240:CDS | 30.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | tig0021410:106864-106883 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | tig0021410:106983-107002 | Msa1391240:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | tig0021410:106989-107008 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | tig0021410:107087-107106 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | tig0021410:107350-107369 | Msa1391240:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | tig0021410:107378-107397 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | tig0021410:107550-107569 | Msa1391240:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | tig0021410:107774-107793 | Msa1391240:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | tig0021410:107802-107821 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | tig0021410:107804-107823 | Msa1391240:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | tig0021410:107872-107891 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | tig0021410:107882-107901 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | tig0021410:107883-107902 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | tig0021410:107940-107959 | Msa1391240:CDS | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | tig0021410:107961-107980 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | tig0021410:107985-108004 | Msa1391240:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | tig0021410:107987-108006 | Msa1391240:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | tig0021410:108089-108108 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | tig0021410:108087-108106 | Msa1391240:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | tig0021410:108089-108108 | Msa1391240:CDS | 35.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | tig0021410:106864-106883 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | tig0021410:106983-107002 | Msa1391240:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | tig0021410:106989-107008 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | tig0021410:107087-107106 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | tig0021410:107350-107369 | Msa1391240:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | tig0021410:107378-107397 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | tig0021410:107550-107569 | Msa1391240:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | tig0021410:107774-107793 | Msa1391240:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | tig0021410:107802-107821 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | tig0021410:107804-107823 | Msa1391240:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | tig0021410:107872-107891 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | tig0021410:107882-107901 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | tig0021410:107883-107902 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | tig0021410:107940-107959 | Msa1391240:CDS | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | tig0021410:107961-107980 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | tig0021410:107985-108004 | Msa1391240:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | tig0021410:107987-108006 | Msa1391240:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | tig0021410:108089-108108 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | tig0021410:108087-108106 | Msa1391240:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | tig0021410:108089-108108 | Msa1391240:CDS | 35.0% |
| AGAACTAAGGCAAGATGAGA+TGG | - | tig0021410:106739-106758 | Msa1391240:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | tig0021410:106770-106789 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | tig0021410:106785-106804 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | tig0021410:106790-106809 | Msa1391240:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | tig0021410:106797-106816 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | tig0021410:106863-106882 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | tig0021410:106982-107001 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | tig0021410:107036-107055 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | tig0021410:107040-107059 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | tig0021410:107161-107180 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | tig0021410:107160-107179 | Msa1391240:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | tig0021410:107508-107527 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | tig0021410:107529-107548 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | tig0021410:107722-107741 | Msa1391240:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | tig0021410:107881-107900 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | tig0021410:107892-107911 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | tig0021410:107902-107921 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | tig0021410:107932-107951 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | tig0021410:107946-107965 | Msa1391240:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | tig0021410:107988-108007 | Msa1391240:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | tig0021410:108030-108049 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | tig0021410:108033-108052 | Msa1391240:intron | 40.0% | |
| AGAACTAAGGCAAGATGAGA+TGG | - | tig0021410:106739-106758 | Msa1391240:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | tig0021410:106770-106789 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | tig0021410:106785-106804 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | tig0021410:106790-106809 | Msa1391240:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | tig0021410:106797-106816 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | tig0021410:106863-106882 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | tig0021410:106982-107001 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | tig0021410:107036-107055 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | tig0021410:107040-107059 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | tig0021410:107161-107180 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | tig0021410:107160-107179 | Msa1391240:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | tig0021410:107508-107527 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | tig0021410:107529-107548 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | tig0021410:107722-107741 | Msa1391240:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | tig0021410:107881-107900 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | tig0021410:107892-107911 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | tig0021410:107902-107921 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | tig0021410:107932-107951 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | tig0021410:107946-107965 | Msa1391240:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | tig0021410:107988-108007 | Msa1391240:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | tig0021410:108030-108049 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | tig0021410:108033-108052 | Msa1391240:intron | 40.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | tig0021410:106771-106790 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | tig0021410:106862-106881 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | tig0021410:107074-107093 | Msa1391240:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | tig0021410:107078-107097 | Msa1391240:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | tig0021410:107084-107103 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | tig0021410:107132-107151 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | tig0021410:107133-107152 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | tig0021410:107134-107153 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | tig0021410:107133-107152 | Msa1391240:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | tig0021410:107479-107498 | Msa1391240:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | tig0021410:107583-107602 | Msa1391240:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | tig0021410:107727-107746 | Msa1391240:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | tig0021410:107744-107763 | Msa1391240:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | tig0021410:107817-107836 | Msa1391240:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | tig0021410:107992-108011 | Msa1391240:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | tig0021410:107993-108012 | Msa1391240:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | tig0021410:108009-108028 | Msa1391240:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | tig0021410:108061-108080 | None:intergenic | 45.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | tig0021410:106771-106790 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | tig0021410:106862-106881 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | tig0021410:107074-107093 | Msa1391240:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | tig0021410:107078-107097 | Msa1391240:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | tig0021410:107084-107103 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | tig0021410:107132-107151 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | tig0021410:107133-107152 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | tig0021410:107134-107153 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | tig0021410:107133-107152 | Msa1391240:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | tig0021410:107479-107498 | Msa1391240:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | tig0021410:107583-107602 | Msa1391240:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | tig0021410:107727-107746 | Msa1391240:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | tig0021410:107744-107763 | Msa1391240:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | tig0021410:107817-107836 | Msa1391240:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | tig0021410:107992-108011 | Msa1391240:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | tig0021410:107993-108012 | Msa1391240:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | tig0021410:108009-108028 | Msa1391240:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | tig0021410:108061-108080 | None:intergenic | 45.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | tig0021410:106861-106880 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | tig0021410:107511-107530 | Msa1391240:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | tig0021410:107786-107805 | Msa1391240:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | tig0021410:107825-107844 | Msa1391240:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | tig0021410:107917-107936 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | tig0021410:107999-108018 | Msa1391240:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | tig0021410:108062-108081 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | tig0021410:108059-108078 | Msa1391240:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | tig0021410:108072-108091 | Msa1391240:CDS | 50.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | tig0021410:106861-106880 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | tig0021410:107511-107530 | Msa1391240:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | tig0021410:107786-107805 | Msa1391240:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | tig0021410:107825-107844 | Msa1391240:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | tig0021410:107917-107936 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | tig0021410:107999-108018 | Msa1391240:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | tig0021410:108062-108081 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | tig0021410:108059-108078 | Msa1391240:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | tig0021410:108072-108091 | Msa1391240:CDS | 50.0% | |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | tig0021410:106860-106879 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | tig0021410:107461-107480 | Msa1391240:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | tig0021410:107462-107481 | Msa1391240:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | tig0021410:107470-107489 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | tig0021410:107913-107932 | Msa1391240:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | tig0021410:108051-108070 | Msa1391240:intron | 55.0% | |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | tig0021410:106860-106879 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | tig0021410:107461-107480 | Msa1391240:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | tig0021410:107462-107481 | Msa1391240:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | tig0021410:107470-107489 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | tig0021410:107913-107932 | Msa1391240:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | tig0021410:108051-108070 | Msa1391240:intron | 55.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | tig0021410:107110-107129 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | tig0021410:107127-107146 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | tig0021410:107125-107144 | Msa1391240:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | tig0021410:107466-107485 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | tig0021410:107463-107482 | Msa1391240:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | tig0021410:107467-107486 | None:intergenic | 60.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | tig0021410:107110-107129 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | tig0021410:107127-107146 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | tig0021410:107125-107144 | Msa1391240:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | tig0021410:107466-107485 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | tig0021410:107463-107482 | Msa1391240:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | tig0021410:107467-107486 | None:intergenic | 60.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | tig0021410:107120-107139 | None:intergenic | 65.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | tig0021410:107120-107139 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021410 | gene | 106728 | 108128 | 106728 | ID=Msa1391240;Name=Msa1391240 |
| tig0021410 | mRNA | 106728 | 108128 | 106728 | ID=Msa1391240-mRNA-1;Parent=Msa1391240;Name=Msa1391240-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.75|1|1|4|0|157 |
| tig0021410 | exon | 108052 | 108128 | 108052 | ID=Msa1391240-mRNA-1:exon:12546;Parent=Msa1391240-mRNA-1 |
| tig0021410 | exon | 107916 | 107959 | 107916 | ID=Msa1391240-mRNA-1:exon:12545;Parent=Msa1391240-mRNA-1 |
| tig0021410 | exon | 107702 | 107760 | 107702 | ID=Msa1391240-mRNA-1:exon:12544;Parent=Msa1391240-mRNA-1 |
| tig0021410 | exon | 106728 | 107021 | 106728 | ID=Msa1391240-mRNA-1:exon:12543;Parent=Msa1391240-mRNA-1 |
| tig0021410 | CDS | 108052 | 108128 | 108052 | ID=Msa1391240-mRNA-1:cds;Parent=Msa1391240-mRNA-1 |
| tig0021410 | CDS | 107916 | 107959 | 107916 | ID=Msa1391240-mRNA-1:cds;Parent=Msa1391240-mRNA-1 |
| tig0021410 | CDS | 107702 | 107760 | 107702 | ID=Msa1391240-mRNA-1:cds;Parent=Msa1391240-mRNA-1 |
| tig0021410 | CDS | 106728 | 107021 | 106728 | ID=Msa1391240-mRNA-1:cds;Parent=Msa1391240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
