AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1176380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176380 MtrunA17_Chr8g0346561 96.000 300 9 2 1 297 1 300 0.0 590
Msa1176380 MtrunA17_Chr7g0275911 51.495 301 91 7 1 292 1 255 3.75e-90 268
Msa1176380 MtrunA17_Chr4g0070611 74.380 121 31 0 1 121 1 121 2.95e-65 207
Msa1176380 MtrunA17_Chr4g0070641 74.380 121 31 0 1 121 1 121 9.29e-65 201
Msa1176380 MtrunA17_Chr3g0121241 75.000 112 28 0 5 116 35 146 1.39e-63 202
Msa1176380 MtrunA17_Chr4g0037141 75.000 116 29 0 1 116 1 116 3.46e-62 198
Msa1176380 MtrunA17_Chr7g0261281 54.386 171 68 1 1 171 1 161 2.55e-61 196
Msa1176380 MtrunA17_Chr1g0187761 61.702 141 52 1 1 141 1 139 1.26e-60 193
Msa1176380 MtrunA17_Chr3g0131121 73.276 116 31 0 1 116 1 116 1.38e-59 192
Msa1176380 MtrunA17_Chr1g0194951 52.874 174 80 1 1 172 1 174 3.03e-59 193
Msa1176380 MtrunA17_Chr7g0274581 61.667 120 46 0 1 120 1 120 3.89e-58 185
Msa1176380 MtrunA17_Chr7g0217741 68.644 118 37 0 1 118 1 118 6.69e-58 188
Msa1176380 MtrunA17_Chr1g0167691 68.103 116 37 0 1 116 1 116 1.88e-57 185
Msa1176380 MtrunA17_Chr2g0323411 68.644 118 37 0 1 118 1 118 1.95e-57 187
Msa1176380 MtrunA17_Chr1g0167661 68.103 116 37 0 1 116 1 116 1.99e-57 185
Msa1176380 MtrunA17_Chr2g0281071 69.748 119 35 1 1 118 1 119 2.53e-57 187
Msa1176380 MtrunA17_Chr4g0060721 58.209 134 56 0 1 134 2 135 4.41e-57 186
Msa1176380 MtrunA17_Chr4g0039971 68.966 116 36 0 1 116 2 117 4.25e-56 184
Msa1176380 MtrunA17_Chr4g0042671 62.687 134 48 1 1 134 1 132 5.25e-56 186
Msa1176380 MtrunA17_Chr4g0048511 68.908 119 36 1 1 118 1 119 7.82e-56 184
Msa1176380 MtrunA17_Chr4g0068061 41.057 246 106 4 1 216 1 237 8.71e-56 183
Msa1176380 MtrunA17_Chr1g0203411 64.706 119 42 0 1 119 1 119 1.85e-55 181
Msa1176380 MtrunA17_Chr8g0349261 67.797 118 36 2 1 116 1 118 2.37e-55 181
Msa1176380 MtrunA17_Chr6g0453471 66.949 118 39 0 1 118 1 118 4.70e-55 182
Msa1176380 MtrunA17_Chr5g0435101 67.544 114 37 0 3 116 2 115 4.80e-55 177
Msa1176380 MtrunA17_Chr3g0115821 67.241 116 38 0 1 116 1 116 9.69e-55 181
Msa1176380 MtrunA17_Chr7g0254411 60.317 126 50 0 1 126 1 126 2.56e-54 179
Msa1176380 MtrunA17_Chr7g0217221 58.955 134 55 0 1 134 1 134 2.70e-54 177
Msa1176380 MtrunA17_Chr3g0092401 61.290 124 48 0 1 124 2 125 5.44e-54 178
Msa1176380 MtrunA17_Chr7g0269831 72.414 116 32 0 1 116 1 116 5.74e-54 179
Msa1176380 MtrunA17_Chr8g0385321 66.379 116 39 0 1 116 1 116 5.22e-53 176
Msa1176380 MtrunA17_Chr5g0410961 60.902 133 49 1 1 130 1 133 9.58e-53 176
Msa1176380 MtrunA17_Chr1g0151941 50.610 164 70 2 1 153 1 164 9.15e-52 170
Msa1176380 MtrunA17_Chr5g0434571 46.667 195 90 5 1 181 37 231 4.94e-51 171
Msa1176380 MtrunA17_Chr3g0110351 62.712 118 44 0 1 118 1 118 5.94e-51 170
Msa1176380 MtrunA17_Chr5g0395281 62.712 118 44 0 1 118 1 118 1.20e-50 169
Msa1176380 MtrunA17_Chr4g0057031 63.793 116 42 0 1 116 1 116 1.54e-50 168
Msa1176380 MtrunA17_Chr4g0044421 63.793 116 42 0 1 116 1 116 2.03e-50 165
Msa1176380 MtrunA17_Chr4g0055981 59.843 127 51 0 8 134 51 177 2.49e-50 166
Msa1176380 MtrunA17_Chr6g0453211 63.964 111 40 0 1 111 1 111 4.21e-50 168
Msa1176380 MtrunA17_Chr7g0228891 63.248 117 43 0 1 117 1 117 5.11e-50 166
Msa1176380 MtrunA17_Chr4g0022931 62.602 123 45 1 1 122 1 123 5.40e-50 166
Msa1176380 MtrunA17_Chr6g0452271 61.864 118 45 0 1 118 1 118 7.47e-50 168
Msa1176380 MtrunA17_Chr3g0135311 63.248 117 42 1 1 116 1 117 1.42e-49 167
Msa1176380 MtrunA17_Chr1g0152011 43.350 203 96 5 1 198 1 189 2.56e-49 167
Msa1176380 MtrunA17_Chr5g0400821 43.216 199 96 4 1 198 1 183 2.65e-49 166
Msa1176380 MtrunA17_Chr2g0311221 64.545 110 39 0 2 111 4 113 4.01e-49 166
Msa1176380 MtrunA17_Chr8g0343831 67.290 107 35 0 12 118 8 114 5.55e-49 163
Msa1176380 MtrunA17_Chr4g0028311 60.331 121 47 1 1 120 1 121 2.46e-48 164
Msa1176380 MtrunA17_Chr2g0323351 53.425 146 59 1 1 137 1 146 6.67e-48 160
Msa1176380 MtrunA17_Chr2g0327351 63.063 111 40 1 1 110 1 111 7.84e-48 162
Msa1176380 MtrunA17_Chr1g0193801 51.299 154 70 2 1 154 1 149 8.91e-48 164
Msa1176380 MtrunA17_Chr1g0193371 54.362 149 63 2 1 149 1 144 1.06e-47 163
Msa1176380 MtrunA17_Chr7g0270891 61.864 118 45 0 1 118 1 118 1.23e-47 163
Msa1176380 MtrunA17_Chr7g0264641 58.974 117 47 1 1 116 1 117 1.84e-47 160
Msa1176380 MtrunA17_Chr4g0058631 55.714 140 60 1 1 140 1 138 2.02e-47 162
Msa1176380 MtrunA17_Chr4g0022901 59.843 127 50 1 1 126 1 127 3.61e-47 159
Msa1176380 MtrunA17_Chr4g0022891 61.607 112 43 0 1 112 1 112 4.09e-47 158
Msa1176380 MtrunA17_Chr8g0387421 57.983 119 50 0 1 119 1 119 4.13e-47 160
Msa1176380 MtrunA17_Chr4g0022911 57.480 127 53 1 1 126 1 127 8.97e-47 159
Msa1176380 MtrunA17_Chr4g0054391 51.034 145 67 2 1 141 1 145 1.29e-46 158
Msa1176380 MtrunA17_Chr4g0072751 62.162 111 41 1 1 110 1 111 1.50e-46 160
Msa1176380 MtrunA17_Chr3g0103281 58.621 116 48 0 1 116 1 116 2.38e-46 158
Msa1176380 MtrunA17_Chr7g0228231 65.421 107 37 0 12 118 14 120 3.70e-46 154
Msa1176380 MtrunA17_Chr3g0117091 58.268 127 51 1 1 127 1 125 5.57e-46 158
Msa1176380 MtrunA17_Chr5g0397231 60.909 110 43 0 1 110 1 110 8.78e-46 157
Msa1176380 MtrunA17_Chr1g0209661 64.486 107 38 0 12 118 27 133 1.63e-45 156
Msa1176380 MtrunA17_Chr1g0194291 59.664 119 46 1 9 127 18 134 1.70e-45 154
Msa1176380 MtrunA17_Chr7g0271241 64.220 109 39 0 1 109 1 109 1.84e-45 157
Msa1176380 MtrunA17_Chr2g0330041 57.759 116 49 0 1 116 1 116 2.78e-45 157
Msa1176380 MtrunA17_Chr7g0240821 51.389 144 66 2 16 155 5 148 3.46e-45 152
Msa1176380 MtrunA17_Chr6g0487491 54.074 135 53 2 1 126 1 135 3.76e-45 154
Msa1176380 MtrunA17_Chr6g0450101 59.167 120 47 1 1 118 1 120 4.09e-45 152
Msa1176380 MtrunA17_Chr7g0220341 56.250 128 46 2 10 135 23 142 4.80e-45 154
Msa1176380 MtrunA17_Chr1g0168661 66.667 102 34 0 14 115 23 124 6.87e-45 153
Msa1176380 MtrunA17_Chr1g0211161 57.600 125 51 1 3 127 4 126 9.76e-45 151
Msa1176380 MtrunA17_Chr1g0186061 65.686 102 35 0 14 115 22 123 2.60e-44 151
Msa1176380 MtrunA17_Chr8g0342521 53.030 132 62 0 1 132 1 132 3.65e-44 153
Msa1176380 MtrunA17_Chr4g0022881 52.941 136 59 1 1 136 1 131 3.96e-44 150
Msa1176380 MtrunA17_Chr5g0417821 61.017 118 44 1 10 127 5 120 4.47e-44 151
Msa1176380 MtrunA17_Chr8g0342541 56.897 116 50 0 1 116 1 116 4.96e-44 153
Msa1176380 MtrunA17_Chr2g0309911 57.658 111 47 0 6 116 5 115 1.06e-43 151
Msa1176380 MtrunA17_Chr2g0294811 66.304 92 31 0 1 92 1 92 1.89e-43 144
Msa1176380 MtrunA17_Chr5g0434931 62.264 106 40 0 11 116 34 139 2.46e-43 149
Msa1176380 MtrunA17_Chr1g0194301 59.649 114 44 1 12 125 33 144 2.55e-43 149
Msa1176380 MtrunA17_Chr5g0434911 60.909 110 43 0 7 116 16 125 4.49e-43 149
Msa1176380 MtrunA17_Chr4g0032401 51.938 129 62 0 12 140 17 145 7.97e-43 149
Msa1176380 MtrunA17_Chr3g0088461 59.633 109 44 0 9 117 19 127 1.36e-42 149
Msa1176380 MtrunA17_Chr2g0328771 51.163 129 63 0 12 140 20 148 1.54e-42 148
Msa1176380 MtrunA17_Chr8g0360111 62.745 102 38 0 11 112 24 125 9.26e-42 145
Msa1176380 MtrunA17_Chr5g0434831 62.264 106 40 0 11 116 6 111 9.81e-42 142
Msa1176380 MtrunA17_Chr8g0342481 55.556 117 51 1 1 116 1 117 1.18e-41 148
Msa1176380 MtrunA17_Chr7g0228991 59.459 111 45 0 11 121 28 138 1.42e-41 144
Msa1176380 MtrunA17_Chr3g0080861 63.366 101 37 0 10 110 35 135 1.79e-41 150
Msa1176380 MtrunA17_Chr8g0354661 59.434 106 43 0 10 115 35 140 2.83e-40 147
Msa1176380 MtrunA17_Chr2g0327821 53.390 118 55 0 12 129 6 123 1.42e-39 138
Msa1176380 MtrunA17_Chr3g0099131 59.813 107 42 1 12 118 41 146 1.45e-39 145
Msa1176380 MtrunA17_Chr2g0322521 59.459 111 44 1 8 118 25 134 1.62e-39 142
Msa1176380 MtrunA17_Chr5g0434841 59.434 106 43 0 11 116 19 124 2.50e-39 140
Msa1176380 MtrunA17_Chr6g0470971 59.804 102 41 0 14 115 16 117 6.23e-39 138
Msa1176380 MtrunA17_Chr1g0154031 58.333 108 45 0 12 119 76 183 6.75e-39 141
Msa1176380 MtrunA17_Chr4g0068921 59.483 116 45 1 12 127 24 137 1.08e-38 135
Msa1176380 MtrunA17_Chr1g0203441 57.143 105 45 0 14 118 15 119 1.71e-38 136
Msa1176380 MtrunA17_Chr2g0293911 58.824 119 47 1 9 127 21 137 2.36e-38 137
Msa1176380 MtrunA17_Chr4g0042611 64.773 88 31 0 1 88 1 88 3.29e-38 130
Msa1176380 MtrunA17_Chr1g0180391 58.716 109 45 0 12 120 19 127 5.95e-38 134
Msa1176380 MtrunA17_Chr4g0030881 55.000 120 45 2 14 126 9 126 2.07e-37 133
Msa1176380 MtrunA17_Chr7g0247131 74.324 74 19 0 44 117 10 83 2.20e-37 134
Msa1176380 MtrunA17_Chr1g0192411 45.517 145 75 1 10 154 10 150 2.77e-37 137
Msa1176380 MtrunA17_Chr5g0395221 59.091 88 36 0 1 88 1 88 4.18e-33 117
Msa1176380 MtrunA17_Chr2g0323321 59.783 92 36 1 1 92 1 91 1.99e-31 113
Msa1176380 MtrunA17_Chr8g0342511 56.322 87 38 0 1 87 1 87 1.34e-30 110
Msa1176380 MtrunA17_Chr7g0229101 73.913 69 18 0 44 112 4 72 4.86e-30 112
Msa1176380 MtrunA17_Chr5g0440781 48.980 98 49 1 14 110 14 111 8.51e-30 111
Msa1176380 MtrunA17_Chr8g0342531 44.828 116 59 1 1 111 1 116 1.05e-29 110
Msa1176380 MtrunA17_Chr8g0342461 54.444 90 40 1 1 89 1 90 1.49e-29 109
Msa1176380 MtrunA17_Chr4g0013361 34.171 199 121 3 12 209 10 199 1.90e-29 113
Msa1176380 MtrunA17_Chr5g0401731 46.032 126 60 2 14 139 15 132 1.99e-29 114
Msa1176380 MtrunA17_Chr6g0454921 52.525 99 46 1 14 112 15 112 4.78e-29 110
Msa1176380 MtrunA17_Chr8g0342471 54.444 90 40 1 1 89 1 90 4.83e-29 108
Msa1176380 MtrunA17_Chr3g0099141 52.941 85 40 0 12 96 40 124 4.96e-29 108
Msa1176380 MtrunA17_Chr5g0441141 48.980 98 49 1 14 110 14 111 8.57e-29 111
Msa1176380 MtrunA17_Chr5g0440761 48.980 98 49 1 14 110 14 111 8.91e-29 110
Msa1176380 MtrunA17_Chr4g0053431 37.870 169 90 4 14 182 5 158 1.41e-28 110
Msa1176380 MtrunA17_Chr8g0334881 49.000 100 50 1 12 110 10 109 6.94e-28 109
Msa1176380 MtrunA17_Chr5g0441131 39.535 129 72 2 6 133 3 126 1.20e-27 105
Msa1176380 MtrunA17_Chr4g0008551 50.000 102 50 1 14 115 38 138 1.66e-27 109
Msa1176380 MtrunA17_Chr4g0058991 46.957 115 58 2 9 123 204 315 3.57e-27 110
Msa1176380 MtrunA17_Chr5g0434901 70.769 65 19 0 48 112 9 73 3.99e-27 102
Msa1176380 MtrunA17_Chr7g0229131 64.384 73 26 0 44 116 4 76 4.19e-27 103
Msa1176380 MtrunA17_Chr3g0133601 48.039 102 52 1 14 115 37 137 5.19e-26 102
Msa1176380 MtrunA17_Chr3g0117511 47.059 102 53 1 9 110 178 278 1.32e-25 105
Msa1176380 MtrunA17_Chr5g0429661 47.475 99 51 1 12 110 120 217 4.57e-25 102
Msa1176380 MtrunA17_Chr7g0238631 48.571 105 53 1 12 116 111 214 9.18e-24 100
Msa1176380 MtrunA17_Chr7g0238631 34.821 112 71 2 14 124 61 171 7.37e-12 65.9
Msa1176380 MtrunA17_Chr5g0437321 46.465 99 52 1 14 112 19 116 4.42e-23 96.3
Msa1176380 MtrunA17_Chr6g0480581 40.952 105 60 2 14 118 4 106 1.81e-22 93.6
Msa1176380 MtrunA17_Chr7g0228531 47.525 101 51 2 10 110 216 314 4.97e-22 95.5
Msa1176380 MtrunA17_Chr1g0157731 41.905 105 60 1 12 116 89 192 1.41e-21 95.1
Msa1176380 MtrunA17_Chr1g0157731 37.000 100 61 2 14 112 39 137 3.15e-11 63.9
Msa1176380 MtrunA17_Chr3g0139671 41.905 105 60 1 12 116 83 186 2.50e-21 94.4
Msa1176380 MtrunA17_Chr5g0425591 43.678 87 48 1 8 93 5 91 2.89e-21 86.3
Msa1176380 MtrunA17_Chr6g0460661 37.600 125 74 3 14 137 16 137 2.90e-21 88.2
Msa1176380 MtrunA17_Chr5g0417621 39.474 114 63 2 2 115 127 234 3.12e-21 93.2
Msa1176380 MtrunA17_Chr3g0125801 40.909 110 64 1 14 123 16 124 1.77e-20 89.4
Msa1176380 MtrunA17_Chr3g0093811 50.000 84 40 1 44 127 14 95 2.02e-20 88.6
Msa1176380 MtrunA17_Chr4g0042501 38.596 114 64 2 2 115 98 205 2.99e-20 90.1
Msa1176380 MtrunA17_Chr6g0453751 48.913 92 38 3 11 93 19 110 3.07e-20 84.7
Msa1176380 MtrunA17_Chr7g0238651 37.719 114 69 1 17 128 10 123 1.94e-19 87.4
Msa1176380 MtrunA17_Chr1g0177901 45.977 87 46 1 24 110 4 89 4.29e-19 83.6
Msa1176380 MtrunA17_Chr7g0228401 47.674 86 44 1 25 110 290 374 4.30e-19 87.0
Msa1176380 MtrunA17_Chr5g0397841 42.478 113 64 1 12 124 108 219 4.73e-19 87.0
Msa1176380 MtrunA17_Chr6g0460671 40.385 104 61 1 14 117 99 201 9.40e-19 85.1
Msa1176380 MtrunA17_Chr7g0228481 42.574 101 56 2 10 110 216 314 7.56e-18 83.2
Msa1176380 MtrunA17_Chr7g0233061 41.379 116 50 4 14 120 180 286 8.95e-18 82.4
Msa1176380 MtrunA17_Chr7g0254261 37.302 126 71 4 3 123 74 196 3.01e-17 80.9
Msa1176380 MtrunA17_Chr5g0434871 72.093 43 12 0 74 116 2 44 3.75e-17 74.3
Msa1176380 MtrunA17_Chr5g0416341 38.776 98 59 1 13 110 25 121 3.33e-16 78.6
Msa1176380 MtrunA17_Chr8g0362231 38.318 107 64 2 13 119 21 125 1.38e-15 76.6
Msa1176380 MtrunA17_Chr1g0193901 51.724 58 27 1 12 68 11 68 3.39e-14 67.8
Msa1176380 MtrunA17_Chr1g0193891 51.724 58 27 1 12 68 11 68 3.39e-14 67.8
Msa1176380 MtrunA17_Chr1g0193871 51.724 58 27 1 12 68 11 68 3.39e-14 67.8
Msa1176380 MtrunA17_Chr1g0193881 51.724 58 27 1 12 68 11 68 3.39e-14 67.8
Msa1176380 MtrunA17_Chr7g0247141 54.167 48 21 1 1 47 1 48 1.02e-13 65.1
Msa1176380 MtrunA17_Chr5g0434891 75.000 36 9 0 77 112 1 36 4.53e-13 65.5
Msa1176380 MtrunA17_Chr2g0322831 68.421 38 12 0 71 108 35 72 1.54e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176380 AT5G49330.1 74.138 116 30 0 1 116 1 116 1.39e-62 201
Msa1176380 AT3G13540.1 63.504 137 44 1 4 134 15 151 1.75e-62 198
Msa1176380 AT4G38620.1 75.000 116 29 0 1 116 1 116 2.93e-62 199
Msa1176380 AT1G22640.1 74.138 116 30 0 1 116 1 116 4.23e-62 197
Msa1176380 AT3G23250.1 60.432 139 55 0 1 139 1 139 4.27e-61 196
Msa1176380 AT2G47460.1 71.795 117 33 0 1 117 1 117 9.12e-61 197
Msa1176380 AT2G16720.1 71.552 116 33 0 1 116 1 116 2.17e-60 193
Msa1176380 AT1G06180.1 68.333 120 38 0 1 120 1 120 2.88e-60 192
Msa1176380 AT4G09460.1 72.414 116 32 0 1 116 1 116 3.17e-60 192
Msa1176380 AT3G62610.1 71.795 117 33 0 1 117 1 117 2.02e-59 193
Msa1176380 AT4G34990.1 72.881 118 32 0 1 118 1 118 2.43e-59 191
Msa1176380 AT2G31180.1 66.387 119 40 0 1 119 1 119 7.17e-59 189
Msa1176380 AT5G16770.4 72.414 116 32 0 1 116 1 116 4.40e-58 189
Msa1176380 AT5G16770.3 72.414 116 32 0 1 116 1 116 4.40e-58 189
Msa1176380 AT4G21440.1 68.644 118 37 0 1 118 1 118 4.42e-58 190
Msa1176380 AT1G35515.1 68.103 116 37 0 1 116 1 116 7.14e-58 185
Msa1176380 AT3G02940.2 70.690 116 34 0 1 116 1 116 7.18e-58 188
Msa1176380 AT5G16770.1 72.414 116 32 0 1 116 1 116 9.00e-58 189
Msa1176380 AT5G16770.2 72.414 116 32 0 1 116 1 116 9.00e-58 189
Msa1176380 AT3G02940.1 70.690 116 34 0 1 116 1 116 1.61e-57 187
Msa1176380 AT3G02940.3 70.690 116 34 0 1 116 1 116 1.61e-57 187
Msa1176380 AT4G28110.1 65.546 119 41 0 1 119 1 119 1.27e-56 184
Msa1176380 AT3G61250.1 66.379 116 39 0 1 116 1 116 3.51e-56 184
Msa1176380 AT3G01140.2 69.828 116 35 0 1 116 1 116 4.02e-56 185
Msa1176380 AT5G15310.4 62.222 135 49 1 1 135 1 133 4.60e-56 181
Msa1176380 AT5G15310.2 62.222 135 49 1 1 135 1 133 6.13e-56 183
Msa1176380 AT5G15310.1 62.222 135 49 1 1 135 1 133 7.25e-56 184
Msa1176380 AT1G08810.1 52.174 161 69 1 1 161 1 153 1.11e-55 182
Msa1176380 AT3G47600.1 60.156 128 51 0 1 128 1 128 1.58e-55 183
Msa1176380 AT4G05100.1 67.521 117 37 1 1 116 1 117 5.87e-55 181
Msa1176380 AT5G60890.1 62.992 127 45 1 1 127 1 125 7.14e-54 177
Msa1176380 AT3G01140.1 68.103 116 37 0 1 116 44 159 5.49e-53 178
Msa1176380 AT5G62470.2 50.658 152 75 0 1 152 1 152 6.50e-53 177
Msa1176380 AT1G74650.1 64.655 116 41 0 1 116 1 116 6.53e-53 176
Msa1176380 AT5G10280.1 66.379 116 39 0 1 116 1 116 8.50e-53 176
Msa1176380 AT1G79180.1 60.163 123 49 0 2 124 4 126 2.13e-52 174
Msa1176380 AT1G56160.1 58.462 130 54 0 2 131 4 133 3.98e-52 173
Msa1176380 AT1G16490.1 62.609 115 43 0 2 116 4 118 4.60e-52 172
Msa1176380 AT5G62470.1 50.658 152 74 1 1 152 1 151 1.40e-51 173
Msa1176380 AT5G16600.1 48.571 175 84 2 1 171 1 173 1.51e-51 172
Msa1176380 AT4G17785.2 66.667 117 38 1 1 116 1 117 1.61e-51 173
Msa1176380 AT1G34670.1 65.517 116 40 0 1 116 1 116 1.99e-51 173
Msa1176380 AT4G17785.1 66.667 117 38 1 1 116 1 117 2.54e-51 173
Msa1176380 AT3G28910.1 61.157 121 47 0 1 121 1 121 3.07e-51 171
Msa1176380 AT5G14750.1 65.517 116 39 1 14 128 18 133 3.18e-51 167
Msa1176380 AT5G61420.2 59.843 127 49 1 1 127 1 125 3.75e-51 172
Msa1176380 AT4G22680.1 51.875 160 74 2 1 160 1 157 7.94e-51 169
Msa1176380 AT4G37780.1 60.331 121 47 1 1 120 1 121 8.58e-51 170
Msa1176380 AT1G66230.1 54.110 146 61 1 1 140 1 146 9.26e-51 169
Msa1176380 AT4G12350.1 62.712 118 44 0 1 118 1 118 1.28e-50 169
Msa1176380 AT1G09540.1 51.553 161 76 1 1 161 1 159 1.43e-50 171
Msa1176380 AT5G65230.1 62.931 116 43 0 1 116 1 116 1.76e-50 169
Msa1176380 AT5G35550.1 67.890 109 35 0 12 120 14 122 2.48e-50 167
Msa1176380 AT5G07690.1 62.931 116 43 0 1 116 1 116 3.78e-50 169
Msa1176380 AT3G27920.1 60.656 122 48 0 14 135 16 137 4.87e-50 166
Msa1176380 AT1G18570.1 55.484 155 65 3 1 154 1 152 9.87e-50 168
Msa1176380 AT1G74080.1 64.912 114 40 0 1 114 1 114 2.75e-49 167
Msa1176380 AT5G40330.1 68.932 103 32 0 14 116 14 116 2.92e-49 163
Msa1176380 AT5G54230.1 62.712 118 44 0 1 118 1 118 2.99e-49 166
Msa1176380 AT5G26660.1 63.559 118 43 0 1 118 1 118 6.70e-49 166
Msa1176380 AT5G52600.1 63.158 114 42 0 8 121 8 121 2.97e-48 160
Msa1176380 AT5G07700.1 61.207 116 45 0 1 116 1 116 4.01e-48 164
Msa1176380 AT5G07700.2 61.207 116 45 0 1 116 1 116 4.01e-48 164
Msa1176380 AT5G57620.1 55.556 135 56 2 1 131 1 135 9.55e-48 162
Msa1176380 AT5G14340.1 62.393 117 44 0 1 117 13 129 9.84e-48 161
Msa1176380 AT4G01680.3 61.538 117 45 0 1 117 1 117 1.14e-47 160
Msa1176380 AT1G57560.1 61.017 118 46 0 1 118 1 118 1.32e-47 162
Msa1176380 AT1G57560.2 61.017 118 46 0 1 118 1 118 2.72e-47 160
Msa1176380 AT5G65790.1 59.016 122 49 1 1 121 1 122 3.38e-47 162
Msa1176380 AT5G62320.1 60.484 124 42 1 2 118 3 126 4.04e-47 158
Msa1176380 AT4G01680.1 61.538 117 45 0 1 117 1 117 4.51e-47 161
Msa1176380 AT3G49690.1 58.197 122 50 1 1 121 1 122 4.68e-47 160
Msa1176380 AT5G23000.1 59.829 117 46 1 1 116 1 117 4.75e-47 160
Msa1176380 AT2G32460.2 58.871 124 47 1 11 134 5 124 8.69e-47 164
Msa1176380 AT1G63910.1 57.627 118 50 0 1 118 1 118 8.99e-47 161
Msa1176380 AT5G56110.1 59.483 116 47 0 1 116 1 116 9.41e-47 160
Msa1176380 AT2G32460.1 58.871 124 47 1 11 134 17 136 1.02e-46 164
Msa1176380 AT3G30210.1 45.556 180 93 3 11 188 26 202 2.76e-46 157
Msa1176380 AT3G12820.1 60.526 114 45 0 3 116 5 118 3.18e-46 156
Msa1176380 AT3G13890.2 58.120 117 49 0 1 117 1 117 4.14e-46 159
Msa1176380 AT3G24310.1 62.069 116 44 0 11 126 17 132 6.88e-46 156
Msa1176380 AT1G66370.1 62.609 115 39 1 1 115 1 111 7.13e-46 155
Msa1176380 AT3G27810.1 56.667 120 52 0 8 127 16 135 8.68e-46 154
Msa1176380 AT2G36890.1 59.829 117 46 1 1 116 1 117 1.13e-45 156
Msa1176380 AT2G36890.2 59.829 117 46 1 1 116 42 158 1.50e-45 157
Msa1176380 AT1G79180.2 47.436 156 49 1 2 124 4 159 1.81e-45 157
Msa1176380 AT5G40350.1 57.500 120 51 0 12 131 17 136 2.00e-45 153
Msa1176380 AT4G13480.1 67.308 104 34 0 14 117 8 111 2.13e-45 154
Msa1176380 AT5G12870.1 59.459 111 45 0 12 122 18 128 5.61e-45 154
Msa1176380 AT3G01530.1 63.208 106 39 0 12 117 25 130 6.62e-45 151
Msa1176380 AT1G74430.1 58.475 118 49 0 1 118 1 118 1.12e-44 153
Msa1176380 AT3G28470.1 60.000 110 44 0 1 110 1 110 2.73e-44 153
Msa1176380 AT4G26930.1 63.303 109 39 1 10 118 17 124 1.16e-43 153
Msa1176380 AT3G08500.1 61.468 109 42 0 9 117 27 135 1.53e-43 152
Msa1176380 AT4G01680.2 55.814 129 45 1 1 117 1 129 1.83e-43 152
Msa1176380 AT2G47190.1 57.265 117 48 1 12 128 20 134 4.69e-43 149
Msa1176380 AT3G13890.1 53.968 126 49 1 1 117 1 126 4.77e-43 151
Msa1176380 AT1G68320.1 62.617 107 40 0 12 118 19 125 1.65e-42 148
Msa1176380 AT1G25340.1 62.857 105 39 0 14 118 20 124 1.82e-42 147
Msa1176380 AT3G12720.1 54.955 111 50 0 6 116 16 126 1.15e-41 146
Msa1176380 AT1G48000.1 60.952 105 41 0 10 114 30 134 1.42e-41 144
Msa1176380 AT1G18710.1 54.237 118 54 0 1 118 1 118 1.57e-41 145
Msa1176380 AT3G46130.1 55.172 116 52 0 11 126 8 123 1.17e-40 142
Msa1176380 AT5G59780.3 55.752 113 50 0 14 126 10 122 2.78e-40 140
Msa1176380 AT5G55020.1 59.633 109 43 1 10 118 24 131 3.41e-40 147
Msa1176380 AT1G56650.1 66.667 105 35 0 11 115 7 111 3.61e-40 140
Msa1176380 AT1G66380.1 65.714 105 36 0 11 115 7 111 1.01e-39 136
Msa1176380 AT5G06100.1 57.407 108 45 1 11 118 31 137 1.56e-39 144
Msa1176380 AT2G26960.1 58.182 110 45 1 9 118 17 125 3.87e-39 142
Msa1176380 AT5G06100.5 57.407 108 45 1 11 118 31 137 6.50e-39 143
Msa1176380 AT5G06100.2 57.407 108 45 1 11 118 31 137 6.50e-39 143
Msa1176380 AT5G06100.3 57.407 108 45 1 11 118 31 137 6.50e-39 143
Msa1176380 AT5G06100.4 57.407 108 45 1 11 118 31 137 6.50e-39 143
Msa1176380 AT3G11440.2 57.009 107 45 1 12 118 41 146 7.32e-39 142
Msa1176380 AT1G66390.1 65.714 105 36 0 11 115 7 111 1.41e-38 136
Msa1176380 AT1G25340.2 60.000 105 37 1 14 118 20 119 3.21e-38 136
Msa1176380 AT3G11440.3 57.009 107 45 1 12 118 41 146 3.27e-38 142
Msa1176380 AT3G11440.4 57.009 107 45 1 12 118 41 146 3.27e-38 142
Msa1176380 AT3G11440.1 57.009 107 45 1 12 118 41 146 3.27e-38 142
Msa1176380 AT3G53200.1 58.491 106 44 0 12 117 9 114 3.48e-38 135
Msa1176380 AT4G25560.1 55.357 112 50 0 14 125 12 123 6.03e-38 135
Msa1176380 AT1G25340.3 60.000 105 37 1 14 118 20 119 6.37e-38 136
Msa1176380 AT3G06490.1 58.824 119 47 1 9 127 16 132 1.19e-37 136
Msa1176380 AT5G14750.3 76.623 77 15 1 40 116 13 86 1.63e-37 131
Msa1176380 AT5G49620.1 58.621 116 46 1 12 127 26 139 6.80e-37 134
Msa1176380 AT5G35550.2 76.316 76 18 0 45 120 50 125 2.22e-35 128
Msa1176380 AT3G48920.1 51.852 108 52 0 14 121 20 127 1.10e-33 124
Msa1176380 AT5G52260.1 54.206 107 49 0 14 120 14 120 1.87e-33 124
Msa1176380 AT5G49620.2 51.128 133 49 2 9 127 23 153 2.21e-33 125
Msa1176380 AT5G26660.2 69.737 76 23 0 43 118 12 87 2.86e-32 122
Msa1176380 AT3G47600.2 63.095 84 31 0 45 128 39 122 1.08e-31 120
Msa1176380 AT3G27810.2 60.241 83 33 0 45 127 4 86 6.26e-31 114
Msa1176380 AT3G46130.3 60.241 83 33 0 44 126 9 91 3.72e-30 114
Msa1176380 AT5G40350.2 58.621 87 36 0 45 131 5 91 4.18e-30 112
Msa1176380 AT3G46130.4 59.524 84 34 0 43 126 18 101 5.72e-30 114
Msa1176380 AT5G59780.2 59.524 84 34 0 43 126 18 101 8.27e-30 112
Msa1176380 AT3G12820.2 70.000 70 21 0 47 116 1 70 1.16e-29 111
Msa1176380 AT1G22640.3 83.051 59 10 0 58 116 1 59 1.79e-29 111
Msa1176380 AT3G53200.2 65.333 75 26 0 43 117 7 81 3.87e-29 110
Msa1176380 AT2G26950.1 44.037 109 61 0 6 114 10 118 1.05e-28 113
Msa1176380 AT4G37260.1 49.550 111 55 1 14 124 13 122 4.42e-28 110
Msa1176380 AT5G14750.4 76.271 59 14 0 58 116 1 59 2.63e-27 103
Msa1176380 AT5G14750.2 76.271 59 14 0 58 116 1 59 2.63e-27 103
Msa1176380 AT3G55730.1 52.941 102 47 1 14 115 56 156 1.48e-26 108
Msa1176380 AT3G23250.2 57.317 82 35 0 58 139 1 82 1.60e-26 104
Msa1176380 AT1G66380.3 73.611 72 19 0 44 115 7 78 1.63e-26 100
Msa1176380 AT3G27785.1 47.414 116 54 3 9 122 184 294 2.46e-26 107
Msa1176380 AT3G60460.1 47.000 100 52 1 12 110 11 110 2.82e-26 105
Msa1176380 AT3G50060.1 39.370 127 76 1 14 140 6 131 2.99e-26 105
Msa1176380 AT2G23290.1 48.718 117 53 2 14 124 13 128 3.07e-26 105
Msa1176380 AT4G18770.1 45.299 117 57 3 9 123 212 323 4.89e-25 103
Msa1176380 AT5G40360.1 47.917 96 49 1 14 109 158 252 8.39e-25 102
Msa1176380 AT1G71030.2 63.636 66 24 0 51 116 5 70 1.16e-24 98.2
Msa1176380 AT1G71030.1 63.636 66 24 0 51 116 19 84 1.54e-24 98.2
Msa1176380 AT5G58850.1 37.821 156 89 3 12 160 103 257 2.41e-24 102
Msa1176380 AT3G09230.1 45.794 107 49 2 14 116 55 156 2.96e-24 101
Msa1176380 AT2G39880.1 48.039 102 52 1 14 115 50 150 5.59e-24 100
Msa1176380 AT1G18960.1 46.602 103 52 2 14 116 10 109 6.30e-24 99.4
Msa1176380 AT5G02320.1 45.455 110 51 2 12 117 125 229 1.88e-23 100
Msa1176380 AT5G02320.1 33.333 114 70 3 14 124 75 185 2.10e-11 64.7
Msa1176380 AT5G02320.2 45.455 110 51 2 12 117 125 229 1.88e-23 100
Msa1176380 AT5G02320.2 33.333 114 70 3 14 124 75 185 2.10e-11 64.7
Msa1176380 AT5G02320.3 45.455 110 51 2 12 117 65 169 2.40e-23 99.8
Msa1176380 AT5G02320.3 33.333 114 70 3 14 124 15 125 2.32e-11 64.3
Msa1176380 AT5G11050.1 39.535 129 73 2 14 138 105 232 3.53e-23 99.0
Msa1176380 AT1G66380.2 57.317 82 35 0 11 92 7 88 7.16e-23 91.3
Msa1176380 AT5G11510.3 42.991 107 56 2 12 116 79 182 1.15e-22 98.6
Msa1176380 AT5G11510.3 35.000 100 63 2 14 112 29 127 4.53e-11 63.9
Msa1176380 AT5G11510.1 42.991 107 56 2 12 116 79 182 1.15e-22 98.6
Msa1176380 AT5G11510.1 35.000 100 63 2 14 112 29 127 4.53e-11 63.9
Msa1176380 AT5G11510.4 42.991 107 56 2 12 116 79 182 1.15e-22 98.6
Msa1176380 AT5G11510.4 35.000 100 63 2 14 112 29 127 4.53e-11 63.9
Msa1176380 AT5G11510.5 42.991 107 56 2 12 116 79 182 1.61e-22 98.2
Msa1176380 AT5G11510.5 35.000 100 63 2 14 112 29 127 3.65e-11 64.3
Msa1176380 AT5G11510.2 42.991 107 56 2 12 116 79 182 1.62e-22 98.2
Msa1176380 AT5G11510.2 35.000 100 63 2 14 112 29 127 3.75e-11 64.3
Msa1176380 AT3G09370.1 45.455 110 51 2 12 117 128 232 2.16e-22 97.1
Msa1176380 AT3G09370.1 33.929 112 72 2 14 124 78 188 3.84e-11 63.9
Msa1176380 AT3G09370.2 45.455 110 51 2 12 117 133 237 2.31e-22 97.1
Msa1176380 AT3G09370.2 33.929 112 72 2 14 124 83 193 3.97e-11 63.9
Msa1176380 AT1G69560.1 40.000 110 65 1 8 117 101 209 3.27e-22 95.1
Msa1176380 AT5G67300.1 42.149 121 60 3 14 129 6 121 3.44e-22 94.4
Msa1176380 AT3G09370.3 45.455 110 51 2 12 117 141 245 3.44e-22 96.7
Msa1176380 AT3G09370.3 33.929 112 72 2 14 124 91 201 4.43e-11 63.5
Msa1176380 AT1G69560.2 40.000 110 65 1 8 117 117 225 4.51e-22 94.7
Msa1176380 AT1G17950.1 42.157 102 58 1 14 115 5 105 2.10e-21 91.3
Msa1176380 AT1G26780.1 42.308 104 59 1 12 115 96 198 7.36e-21 90.5
Msa1176380 AT1G26780.2 42.308 104 59 1 12 115 96 198 9.61e-21 91.3
Msa1176380 AT4G32730.1 40.952 105 61 1 12 116 85 188 1.38e-20 92.4
Msa1176380 AT4G32730.5 40.952 105 61 1 12 116 85 188 1.45e-20 92.4
Msa1176380 AT4G32730.4 40.952 105 61 1 12 116 85 188 1.45e-20 92.4
Msa1176380 AT4G32730.3 40.952 105 61 1 12 116 85 188 1.45e-20 92.4
Msa1176380 AT4G32730.2 40.952 105 61 1 12 116 85 188 1.45e-20 92.4
Msa1176380 AT2G25230.1 43.137 102 57 1 9 110 21 121 5.47e-20 87.0
Msa1176380 AT5G17800.1 38.525 122 71 2 14 132 93 213 1.34e-19 87.8
Msa1176380 AT3G29020.1 37.143 105 65 1 14 118 65 168 2.51e-19 85.1
Msa1176380 AT3G29020.2 35.780 109 69 1 14 122 67 174 4.15e-19 85.9
Msa1176380 AT1G73410.1 39.815 108 64 1 14 121 6 112 4.42e-19 84.7
Msa1176380 AT4G33450.1 34.400 125 76 2 3 127 13 131 8.17e-19 84.3
Msa1176380 AT1G73410.2 39.815 108 64 1 14 121 6 112 1.62e-18 82.4
Msa1176380 AT2G37630.1 37.607 117 71 1 17 131 7 123 1.99e-18 84.7
Msa1176380 AT5G39700.1 38.938 113 67 2 15 127 57 167 4.20e-18 80.9
Msa1176380 AT2G02820.3 39.796 98 58 1 13 110 29 125 5.10e-17 80.5
Msa1176380 AT1G14350.2 36.283 113 71 1 13 125 24 135 6.89e-17 80.9
Msa1176380 AT1G14350.1 36.283 113 71 1 13 125 24 135 6.89e-17 80.9
Msa1176380 AT4G00540.2 38.739 111 64 2 11 118 100 209 1.41e-16 79.7
Msa1176380 AT2G02820.1 39.796 98 58 1 13 110 29 125 1.44e-16 80.1
Msa1176380 AT2G02820.2 39.796 98 58 1 13 110 29 125 2.53e-16 79.3
Msa1176380 AT4G00540.1 38.739 111 64 2 11 118 98 207 2.71e-16 79.0
Msa1176380 AT3G46130.2 56.140 57 25 0 70 126 1 57 5.04e-16 75.1
Msa1176380 AT5G59780.1 56.140 57 25 0 70 126 1 57 5.52e-16 74.7
Msa1176380 AT5G40430.1 38.235 102 61 2 9 110 49 148 1.92e-15 75.1
Msa1176380 AT4G25560.2 58.929 56 23 0 70 125 2 57 3.20e-15 73.6
Msa1176380 AT3G28910.2 62.222 45 17 0 77 121 1 45 2.15e-12 66.2
Msa1176380 AT1G74650.3 70.000 40 12 0 77 116 1 40 2.75e-12 65.9
Msa1176380 AT1G22640.2 86.207 29 4 0 88 116 16 44 4.64e-11 61.2
Msa1176380 AT5G53200.1 57.500 40 17 0 69 108 32 71 5.18e-11 59.3
Msa1176380 AT4G01060.3 57.500 40 17 0 69 108 32 71 6.88e-11 57.8
Msa1176380 AT1G14350.3 41.096 73 43 0 56 128 23 95 7.87e-11 62.8
Msa1176380 AT1G14350.4 41.096 73 43 0 56 128 23 95 7.87e-11 62.8
Msa1176380 AT4G01060.2 57.500 40 17 0 69 108 31 70 7.87e-11 57.8

Find 45 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGATTACATTCACTTCT+TGG 0.201647 8_1:+8427404 Msa1176380:CDS
TTTATTTACCAAAAGCTATT+AGG 0.261962 8_1:+8427684 Msa1176380:CDS
ATGTTACCTCTCTTTATATC+TGG 0.282806 8_1:-8427356 None:intergenic
ATTATGAGATCATCTTCTTC+TGG 0.285264 8_1:-8427383 None:intergenic
ATGGGAGAAAATGACGGATT+TGG 0.291412 8_1:+8427851 Msa1176380:CDS
TACATTCACTTCTTGGAAAT+AGG 0.310796 8_1:+8427411 Msa1176380:CDS
TGTAAGCAATGCATCTTCTT+TGG 0.312547 8_1:-8426801 None:intergenic
AAGTGGAAAAGCAGCAATTA+AGG 0.342227 8_1:-8426678 None:intergenic
AATGAACCACTATCCGTTCT+TGG 0.361966 8_1:-8427725 None:intergenic
TGGGAGAAAATGACGGATTT+GGG 0.377302 8_1:+8427852 Msa1176380:CDS
TGTTCGTCCTGGTAATCTTC+CGG 0.406152 8_1:-8427447 None:intergenic
ACCTTTGTGCAATCCAACTT+TGG 0.431367 8_1:-8426768 None:intergenic
GTTTGTGAGGTTGGTGAGAT+GGG 0.433328 8_1:+8427833 Msa1176380:CDS
GGAAAAGTTGTAGACTTAGA+TGG 0.433825 8_1:+8427318 Msa1176380:CDS
TTTGACACTTGTGGTGATCA+TGG 0.439445 8_1:+8427929 Msa1176380:CDS
ATTATTGTTTGAATCAAAGA+AGG 0.441230 8_1:-8428038 None:intergenic
GCAATTAAGGTAGAACTAGA+AGG 0.456170 8_1:-8426665 None:intergenic
TATGAATCAAATTCATCAAA+TGG 0.456997 8_1:+8427752 Msa1176380:CDS
ACAATGAAATAAAGAACTAC+TGG 0.460692 8_1:+8427471 Msa1176380:CDS
CAACAAAAGAAGAATCAAAC+TGG 0.461443 8_1:-8428012 None:intergenic
AATAACGTTGTTTGTGAGGT+TGG 0.466414 8_1:+8427824 Msa1176380:CDS
ACAAAATATGTTCAAGCTCA+TGG 0.468502 8_1:+8426821 Msa1176380:CDS
TGTTTGTGAGGTTGGTGAGA+TGG 0.469309 8_1:+8427832 Msa1176380:CDS
GCACACTCTAACTTATAAAG+TGG 0.469351 8_1:-8426695 None:intergenic
AATTTACCAAGAACGGATAG+TGG 0.472921 8_1:+8427719 Msa1176380:CDS
ATTTCATTGTCTGTTCGTCC+TGG 0.476703 8_1:-8427458 None:intergenic
AGCTTTAAATTTACCAAGAA+CGG 0.477942 8_1:+8427712 Msa1176380:CDS
GCTCCTTGTTGTGCCAAAGT+TGG 0.480146 8_1:+8426755 Msa1176380:CDS
CTTATAGCCGGAAGATTACC+AGG 0.489283 8_1:+8427440 Msa1176380:CDS
GCATCTTCTTTGGTAGTCCA+TGG 0.496385 8_1:-8426791 None:intergenic
AAGCTCATGGTGAAGGCCAA+TGG 0.528608 8_1:+8426834 Msa1176380:CDS
TAACAATAACGTTGTTTGTG+AGG 0.535786 8_1:+8427820 Msa1176380:CDS
ATGCAGGGCTTCTTAGATGT+GGG 0.539237 8_1:+8427297 Msa1176380:intron
CAACGTTGAAAGATTAGAGA+TGG 0.549953 8_1:+8427892 Msa1176380:CDS
TTGGATTGCACAAAGGTCCA+TGG 0.555842 8_1:+8426774 Msa1176380:CDS
TATGTTCAAGCTCATGGTGA+AGG 0.563260 8_1:+8426827 Msa1176380:CDS
GATGCAGGGCTTCTTAGATG+TGG 0.570675 8_1:+8427296 Msa1176380:intron
GGTGAGATGGGAGAAAATGA+CGG 0.570961 8_1:+8427845 Msa1176380:CDS
ATTCACTTCTTGGAAATAGG+TGG 0.584380 8_1:+8427414 Msa1176380:CDS
AATAGGTGGTCACTTATAGC+CGG 0.596722 8_1:+8427428 Msa1176380:CDS
ATACTTGCAACTCTTGAACA+TGG 0.622142 8_1:+8427976 Msa1176380:CDS
CTTAGACCAGATATAAAGAG+AGG 0.627760 8_1:+8427350 Msa1176380:CDS
AATCCAACTTTGGCACAACA+AGG 0.628485 8_1:-8426758 None:intergenic
GCCAAAGTTGGATTGCACAA+AGG 0.632348 8_1:+8426767 Msa1176380:CDS
AAAGAAGAAGAGAAACAACA+AGG 0.650013 8_1:+8427595 Msa1176380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATATGATATTTATTTAG+TGG + chr8_1:8427108-8427127 Msa1176380:intron 10.0%
!! TAAATATGATATTTATTTAG+TGG + chr8_1:8427108-8427127 Msa1176380:intron 10.0%
!! TTTGATTCAAACAATAATTA+AGG + chr8_1:8428043-8428062 Msa1176380:CDS 15.0%
!! ACAAAACCTAAACAAAAAAA+TGG + chr8_1:8426727-8426746 Msa1176380:exon 20.0%
!! CAAAACCTAAACAAAAAAAT+GGG + chr8_1:8426728-8426747 Msa1176380:exon 20.0%
!! TATATGAAAGAGAGATTAAA+TGG - chr8_1:8426895-8426914 None:intergenic 20.0%
!! TTTGAGAAAATCATGATTAA+AGG - chr8_1:8426927-8426946 None:intergenic 20.0%
!! TTTGAGAAAATCATGATTAA+AGG - chr8_1:8426927-8426946 None:intergenic 20.0%
!!! TTTAGTGGTGTATTTTTTTT+TGG + chr8_1:8427123-8427142 Msa1176380:intron 20.0%
!!! AAAAACTTCTTTTGTATTGT+TGG + chr8_1:8427147-8427166 Msa1176380:intron 20.0%
!! TTTATTTACCAAAAGCTATT+AGG + chr8_1:8427684-8427703 Msa1176380:CDS 20.0%
!! TATGAATCAAATTCATCAAA+TGG + chr8_1:8427752-8427771 Msa1176380:CDS 20.0%
!! ATTATTGTTTGAATCAAAGA+AGG - chr8_1:8428041-8428060 None:intergenic 20.0%
!! ACAAAACCTAAACAAAAAAA+TGG + chr8_1:8426727-8426746 Msa1176380:exon 20.0%
!! CAAAACCTAAACAAAAAAAT+GGG + chr8_1:8426728-8426747 Msa1176380:exon 20.0%
!! TATATGAAAGAGAGATTAAA+TGG - chr8_1:8426895-8426914 None:intergenic 20.0%
!! TTTGAGAAAATCATGATTAA+AGG - chr8_1:8426927-8426946 None:intergenic 20.0%
!! TTTGAGAAAATCATGATTAA+AGG - chr8_1:8426927-8426946 None:intergenic 20.0%
!!! TTTAGTGGTGTATTTTTTTT+TGG + chr8_1:8427123-8427142 Msa1176380:intron 20.0%
!!! AAAAACTTCTTTTGTATTGT+TGG + chr8_1:8427147-8427166 Msa1176380:intron 20.0%
!! TTTATTTACCAAAAGCTATT+AGG + chr8_1:8427684-8427703 Msa1176380:CDS 20.0%
!! TATGAATCAAATTCATCAAA+TGG + chr8_1:8427752-8427771 Msa1176380:CDS 20.0%
!! ATTATTGTTTGAATCAAAGA+AGG - chr8_1:8428041-8428060 None:intergenic 20.0%
! AGAAAATCATGATTAAAGGT+AGG - chr8_1:8426923-8426942 None:intergenic 25.0%
!!! ACTTTTTTGATGATGATTCA+AGG - chr8_1:8427009-8427028 None:intergenic 25.0%
! ATAAGATTACATTCACTTCT+TGG + chr8_1:8427404-8427423 Msa1176380:CDS 25.0%
! ACAATGAAATAAAGAACTAC+TGG + chr8_1:8427471-8427490 Msa1176380:CDS 25.0%
!! GATTTCTTTGCATCTTTTTA+AGG - chr8_1:8427508-8427527 None:intergenic 25.0%
!!! TTGTTGTTGTTCTTTTTCTT+GGG - chr8_1:8427575-8427594 None:intergenic 25.0%
!!! TTTGTTGTTGTTCTTTTTCT+TGG - chr8_1:8427576-8427595 None:intergenic 25.0%
! AAGAAAAGTGACAAGAAAAA+AGG + chr8_1:8427620-8427639 Msa1176380:CDS 25.0%
!!! AGCTTTAAATTTACCAAGAA+CGG + chr8_1:8427712-8427731 Msa1176380:CDS 25.0%
! AGAAAATCATGATTAAAGGT+AGG - chr8_1:8426923-8426942 None:intergenic 25.0%
!!! ACTTTTTTGATGATGATTCA+AGG - chr8_1:8427009-8427028 None:intergenic 25.0%
! ATAAGATTACATTCACTTCT+TGG + chr8_1:8427404-8427423 Msa1176380:CDS 25.0%
! ACAATGAAATAAAGAACTAC+TGG + chr8_1:8427471-8427490 Msa1176380:CDS 25.0%
!! GATTTCTTTGCATCTTTTTA+AGG - chr8_1:8427508-8427527 None:intergenic 25.0%
!!! TTGTTGTTGTTCTTTTTCTT+GGG - chr8_1:8427575-8427594 None:intergenic 25.0%
!!! TTTGTTGTTGTTCTTTTTCT+TGG - chr8_1:8427576-8427595 None:intergenic 25.0%
! AAGAAAAGTGACAAGAAAAA+AGG + chr8_1:8427620-8427639 Msa1176380:CDS 25.0%
!!! AGCTTTAAATTTACCAAGAA+CGG + chr8_1:8427712-8427731 Msa1176380:CDS 25.0%
!!! CTCTTCCCATTTTTTTGTTT+AGG - chr8_1:8426736-8426755 None:intergenic 30.0%
ACAAAATATGTTCAAGCTCA+TGG + chr8_1:8426821-8426840 Msa1176380:CDS 30.0%
!!! AAACTCTTACCAGCTTTTTT+GGG - chr8_1:8426869-8426888 None:intergenic 30.0%
!!! AAAACTCTTACCAGCTTTTT+TGG - chr8_1:8426870-8426889 None:intergenic 30.0%
!!! TTTTGATGATGATTCAAGGT+AGG - chr8_1:8427005-8427024 None:intergenic 30.0%
! TATGTGCTTAATTTGATGCA+GGG + chr8_1:8427282-8427301 Msa1176380:intron 30.0%
ATGTTACCTCTCTTTATATC+TGG - chr8_1:8427359-8427378 None:intergenic 30.0%
ATTATGAGATCATCTTCTTC+TGG - chr8_1:8427386-8427405 None:intergenic 30.0%
TACATTCACTTCTTGGAAAT+AGG + chr8_1:8427411-8427430 Msa1176380:CDS 30.0%
AAAGAAGAAGAGAAACAACA+AGG + chr8_1:8427595-8427614 Msa1176380:CDS 30.0%
! GCTTTTATCCTAATAGCTTT+TGG - chr8_1:8427695-8427714 None:intergenic 30.0%
! TTTGTGTTCCTTCTTTTTGT+TGG - chr8_1:8427781-8427800 None:intergenic 30.0%
TAACAATAACGTTGTTTGTG+AGG + chr8_1:8427820-8427839 Msa1176380:CDS 30.0%
CAACAAAAGAAGAATCAAAC+TGG - chr8_1:8428015-8428034 None:intergenic 30.0%
!!! CTCTTCCCATTTTTTTGTTT+AGG - chr8_1:8426736-8426755 None:intergenic 30.0%
ACAAAATATGTTCAAGCTCA+TGG + chr8_1:8426821-8426840 Msa1176380:CDS 30.0%
!!! AAACTCTTACCAGCTTTTTT+GGG - chr8_1:8426869-8426888 None:intergenic 30.0%
!!! AAAACTCTTACCAGCTTTTT+TGG - chr8_1:8426870-8426889 None:intergenic 30.0%
!!! TTTTGATGATGATTCAAGGT+AGG - chr8_1:8427005-8427024 None:intergenic 30.0%
! TATGTGCTTAATTTGATGCA+GGG + chr8_1:8427282-8427301 Msa1176380:intron 30.0%
ATGTTACCTCTCTTTATATC+TGG - chr8_1:8427359-8427378 None:intergenic 30.0%
ATTATGAGATCATCTTCTTC+TGG - chr8_1:8427386-8427405 None:intergenic 30.0%
TACATTCACTTCTTGGAAAT+AGG + chr8_1:8427411-8427430 Msa1176380:CDS 30.0%
AAAGAAGAAGAGAAACAACA+AGG + chr8_1:8427595-8427614 Msa1176380:CDS 30.0%
! GCTTTTATCCTAATAGCTTT+TGG - chr8_1:8427695-8427714 None:intergenic 30.0%
! TTTGTGTTCCTTCTTTTTGT+TGG - chr8_1:8427781-8427800 None:intergenic 30.0%
TAACAATAACGTTGTTTGTG+AGG + chr8_1:8427820-8427839 Msa1176380:CDS 30.0%
CAACAAAAGAAGAATCAAAC+TGG - chr8_1:8428015-8428034 None:intergenic 30.0%
GCAATTAAGGTAGAACTAGA+AGG - chr8_1:8426668-8426687 None:intergenic 35.0%
AAGTGGAAAAGCAGCAATTA+AGG - chr8_1:8426681-8426700 None:intergenic 35.0%
GCACACTCTAACTTATAAAG+TGG - chr8_1:8426698-8426717 None:intergenic 35.0%
TGTAAGCAATGCATCTTCTT+TGG - chr8_1:8426804-8426823 None:intergenic 35.0%
!! TTTTGGGAAGTGATTTCCAT+TGG - chr8_1:8426853-8426872 None:intergenic 35.0%
AAATCACTTCCCAAAAAAGC+TGG + chr8_1:8426857-8426876 Msa1176380:CDS 35.0%
! CTATGTGCTTAATTTGATGC+AGG + chr8_1:8427281-8427300 Msa1176380:intron 35.0%
GGAAAAGTTGTAGACTTAGA+TGG + chr8_1:8427318-8427337 Msa1176380:CDS 35.0%
CTTAGACCAGATATAAAGAG+AGG + chr8_1:8427350-8427369 Msa1176380:CDS 35.0%
ATTCACTTCTTGGAAATAGG+TGG + chr8_1:8427414-8427433 Msa1176380:CDS 35.0%
AATTTACCAAGAACGGATAG+TGG + chr8_1:8427719-8427738 Msa1176380:CDS 35.0%
AATGGTAGCCAACAAAAAGA+AGG + chr8_1:8427770-8427789 Msa1176380:CDS 35.0%
AATAACGTTGTTTGTGAGGT+TGG + chr8_1:8427824-8427843 Msa1176380:CDS 35.0%
CAACGTTGAAAGATTAGAGA+TGG + chr8_1:8427892-8427911 Msa1176380:CDS 35.0%
!!! GAGTCATATTTTGACACTTG+TGG + chr8_1:8427920-8427939 Msa1176380:CDS 35.0%
ATACTTGCAACTCTTGAACA+TGG + chr8_1:8427976-8427995 Msa1176380:CDS 35.0%
GCAATTAAGGTAGAACTAGA+AGG - chr8_1:8426668-8426687 None:intergenic 35.0%
AAGTGGAAAAGCAGCAATTA+AGG - chr8_1:8426681-8426700 None:intergenic 35.0%
GCACACTCTAACTTATAAAG+TGG - chr8_1:8426698-8426717 None:intergenic 35.0%
TGTAAGCAATGCATCTTCTT+TGG - chr8_1:8426804-8426823 None:intergenic 35.0%
!! TTTTGGGAAGTGATTTCCAT+TGG - chr8_1:8426853-8426872 None:intergenic 35.0%
AAATCACTTCCCAAAAAAGC+TGG + chr8_1:8426857-8426876 Msa1176380:CDS 35.0%
! CTATGTGCTTAATTTGATGC+AGG + chr8_1:8427281-8427300 Msa1176380:intron 35.0%
GGAAAAGTTGTAGACTTAGA+TGG + chr8_1:8427318-8427337 Msa1176380:CDS 35.0%
CTTAGACCAGATATAAAGAG+AGG + chr8_1:8427350-8427369 Msa1176380:CDS 35.0%
ATTCACTTCTTGGAAATAGG+TGG + chr8_1:8427414-8427433 Msa1176380:CDS 35.0%
AATTTACCAAGAACGGATAG+TGG + chr8_1:8427719-8427738 Msa1176380:CDS 35.0%
AATGGTAGCCAACAAAAAGA+AGG + chr8_1:8427770-8427789 Msa1176380:CDS 35.0%
AATAACGTTGTTTGTGAGGT+TGG + chr8_1:8427824-8427843 Msa1176380:CDS 35.0%
CAACGTTGAAAGATTAGAGA+TGG + chr8_1:8427892-8427911 Msa1176380:CDS 35.0%
!!! GAGTCATATTTTGACACTTG+TGG + chr8_1:8427920-8427939 Msa1176380:CDS 35.0%
ATACTTGCAACTCTTGAACA+TGG + chr8_1:8427976-8427995 Msa1176380:CDS 35.0%
AATCCAACTTTGGCACAACA+AGG - chr8_1:8426761-8426780 None:intergenic 40.0%
ACCTTTGTGCAATCCAACTT+TGG - chr8_1:8426771-8426790 None:intergenic 40.0%
TATGTTCAAGCTCATGGTGA+AGG + chr8_1:8426827-8426846 Msa1176380:CDS 40.0%
AATAGGTGGTCACTTATAGC+CGG + chr8_1:8427428-8427447 Msa1176380:CDS 40.0%
ATTTCATTGTCTGTTCGTCC+TGG - chr8_1:8427461-8427480 None:intergenic 40.0%
AATGAACCACTATCCGTTCT+TGG - chr8_1:8427728-8427747 None:intergenic 40.0%
!! ATGGGAGAAAATGACGGATT+TGG + chr8_1:8427851-8427870 Msa1176380:CDS 40.0%
!! TGGGAGAAAATGACGGATTT+GGG + chr8_1:8427852-8427871 Msa1176380:CDS 40.0%
TTTGACACTTGTGGTGATCA+TGG + chr8_1:8427929-8427948 Msa1176380:CDS 40.0%
AATCCAACTTTGGCACAACA+AGG - chr8_1:8426761-8426780 None:intergenic 40.0%
ACCTTTGTGCAATCCAACTT+TGG - chr8_1:8426771-8426790 None:intergenic 40.0%
TATGTTCAAGCTCATGGTGA+AGG + chr8_1:8426827-8426846 Msa1176380:CDS 40.0%
AATAGGTGGTCACTTATAGC+CGG + chr8_1:8427428-8427447 Msa1176380:CDS 40.0%
ATTTCATTGTCTGTTCGTCC+TGG - chr8_1:8427461-8427480 None:intergenic 40.0%
AATGAACCACTATCCGTTCT+TGG - chr8_1:8427728-8427747 None:intergenic 40.0%
!! ATGGGAGAAAATGACGGATT+TGG + chr8_1:8427851-8427870 Msa1176380:CDS 40.0%
!! TGGGAGAAAATGACGGATTT+GGG + chr8_1:8427852-8427871 Msa1176380:CDS 40.0%
TTTGACACTTGTGGTGATCA+TGG + chr8_1:8427929-8427948 Msa1176380:CDS 40.0%
GCCAAAGTTGGATTGCACAA+AGG + chr8_1:8426767-8426786 Msa1176380:CDS 45.0%
TTGGATTGCACAAAGGTCCA+TGG + chr8_1:8426774-8426793 Msa1176380:CDS 45.0%
! GCATCTTCTTTGGTAGTCCA+TGG - chr8_1:8426794-8426813 None:intergenic 45.0%
ATGCAGGGCTTCTTAGATGT+GGG + chr8_1:8427297-8427316 Msa1176380:intron 45.0%
CTTATAGCCGGAAGATTACC+AGG + chr8_1:8427440-8427459 Msa1176380:CDS 45.0%
TGTTCGTCCTGGTAATCTTC+CGG - chr8_1:8427450-8427469 None:intergenic 45.0%
!! TGTTTGTGAGGTTGGTGAGA+TGG + chr8_1:8427832-8427851 Msa1176380:CDS 45.0%
!! GTTTGTGAGGTTGGTGAGAT+GGG + chr8_1:8427833-8427852 Msa1176380:CDS 45.0%
GGTGAGATGGGAGAAAATGA+CGG + chr8_1:8427845-8427864 Msa1176380:CDS 45.0%
GCCAAAGTTGGATTGCACAA+AGG + chr8_1:8426767-8426786 Msa1176380:CDS 45.0%
TTGGATTGCACAAAGGTCCA+TGG + chr8_1:8426774-8426793 Msa1176380:CDS 45.0%
! GCATCTTCTTTGGTAGTCCA+TGG - chr8_1:8426794-8426813 None:intergenic 45.0%
ATGCAGGGCTTCTTAGATGT+GGG + chr8_1:8427297-8427316 Msa1176380:intron 45.0%
CTTATAGCCGGAAGATTACC+AGG + chr8_1:8427440-8427459 Msa1176380:CDS 45.0%
TGTTCGTCCTGGTAATCTTC+CGG - chr8_1:8427450-8427469 None:intergenic 45.0%
!! TGTTTGTGAGGTTGGTGAGA+TGG + chr8_1:8427832-8427851 Msa1176380:CDS 45.0%
!! GTTTGTGAGGTTGGTGAGAT+GGG + chr8_1:8427833-8427852 Msa1176380:CDS 45.0%
GGTGAGATGGGAGAAAATGA+CGG + chr8_1:8427845-8427864 Msa1176380:CDS 45.0%
!!! TTTTTTAATTTAATTTTTGT+AGG - chr8_1:8427039-8427058 None:intergenic 5.0%
!!! TTTTTTAATTTAATTTTTGT+AGG - chr8_1:8427039-8427058 None:intergenic 5.0%
! GCTCCTTGTTGTGCCAAAGT+TGG + chr8_1:8426755-8426774 Msa1176380:CDS 50.0%
AAGCTCATGGTGAAGGCCAA+TGG + chr8_1:8426834-8426853 Msa1176380:CDS 50.0%
GATGCAGGGCTTCTTAGATG+TGG + chr8_1:8427296-8427315 Msa1176380:intron 50.0%
! GCTCCTTGTTGTGCCAAAGT+TGG + chr8_1:8426755-8426774 Msa1176380:CDS 50.0%
AAGCTCATGGTGAAGGCCAA+TGG + chr8_1:8426834-8426853 Msa1176380:CDS 50.0%
GATGCAGGGCTTCTTAGATG+TGG + chr8_1:8427296-8427315 Msa1176380:intron 50.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 8426661 8428063 8426661 ID=Msa1176380;Name=Msa1176380
chr8_1 mRNA 8426661 8428063 8426661 ID=Msa1176380-mRNA-1;Parent=Msa1176380;Name=Msa1176380-mRNA-1;_AED=0.03;_eAED=0.03;_QI=85|1|0.5|1|1|1|2|0|297
chr8_1 exon 8426661 8426878 8426661 ID=Msa1176380-mRNA-1:exon:2881;Parent=Msa1176380-mRNA-1
chr8_1 exon 8427303 8428063 8427303 ID=Msa1176380-mRNA-1:exon:2882;Parent=Msa1176380-mRNA-1
chr8_1 five_prime_UTR 8426661 8426745 8426661 ID=Msa1176380-mRNA-1:five_prime_utr;Parent=Msa1176380-mRNA-1
chr8_1 CDS 8426746 8426878 8426746 ID=Msa1176380-mRNA-1:cds;Parent=Msa1176380-mRNA-1
chr8_1 CDS 8427303 8428063 8427303 ID=Msa1176380-mRNA-1:cds;Parent=Msa1176380-mRNA-1
Gene Sequence

>Msa1176380

ATGGGAAGAGCTCCTTGTTGTGCCAAAGTTGGATTGCACAAAGGTCCATGGACTACCAAAGAAGATGCATTGCTTACAAAATATGTTCAAGCTCATGGTGAAGGCCAATGGAAATCACTTCCCAAAAAAGCTGGGCTTCTTAGATGTGGGAAAAGTTGTAGACTTAGATGGATGAATTATCTTAGACCAGATATAAAGAGAGGTAACATAACTCCAGAAGAAGATGATCTCATAATAAGATTACATTCACTTCTTGGAAATAGGTGGTCACTTATAGCCGGAAGATTACCAGGACGAACAGACAATGAAATAAAGAACTACTGGAACACGCATCTCCTTAAAAAGATGCAAAGAAATCAACAAACATGTGATGCTACAACTGATCATGATGAACAAGAACAACCCAAGAAAAAGAACAACAACAAAAAGAAGAAGAGAAACAACAAGGAGAAGAAAAGTGACAAGAAAAAAGGTACAAATAATGATGATCATAAAGAAGAAGAGAAAATTCAAGTTTATTTACCAAAAGCTATTAGGATAAAAGCTTTAAATTTACCAAGAACGGATAGTGGTTCATTTACATATGAATCAAATTCATCAAATGGTAGCCAACAAAAAGAAGGAACACAAAATGCGACAAACAACAATAATAACAATAACGTTGTTTGTGAGGTTGGTGAGATGGGAGAAAATGACGGATTTGGGCATGACTATGACTTAGTCAACGTTGAAAGATTAGAGATGGAATGTGAGTCATATTTTGACACTTGTGGTGATCATGGAACATTAGATAGACTCTATGATGAATACTTGCAACTCTTGAACATGGATGTTTGCAACTACCAGTTTGATTCTTCTTTTGTTGAATCCTTCTTTGATTCAAACAATAATTAA

Protein sequence

>Msa1176380

MGRAPCCAKVGLHKGPWTTKEDALLTKYVQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLLKKMQRNQQTCDATTDHDEQEQPKKKNNNKKKKRNNKEKKSDKKKGTNNDDHKEEEKIQVYLPKAIRIKALNLPRTDSGSFTYESNSSNGSQQKEGTQNATNNNNNNNVVCEVGEMGENDGFGHDYDLVNVERLEMECESYFDTCGDHGTLDRLYDEYLQLLNMDVCNYQFDSSFVESFFDSNNN*