AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0973850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973850 MtrunA17_Chr6g0452711 98.240 341 4 1 1 339 697 1037 0.0 696
Msa0973850 MtrunA17_Chr7g0216471 85.131 343 47 3 1 339 709 1051 0.0 574
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973850 AT5G15070.7 78.613 346 63 6 1 339 461 802 0.0 547
Msa0973850 AT5G15070.6 78.613 346 63 6 1 339 461 802 0.0 547
Msa0973850 AT5G15070.1 78.613 346 63 6 1 339 702 1043 0.0 546
Msa0973850 AT5G15070.4 78.613 346 63 6 1 339 702 1043 0.0 546
Msa0973850 AT5G15070.5 78.613 346 63 6 1 339 708 1049 0.0 545
Msa0973850 AT5G15070.2 76.404 356 63 7 1 339 702 1053 0.0 536
Msa0973850 AT3G01310.3 74.344 343 79 5 1 339 675 1012 8.75e-172 504
Msa0973850 AT3G01310.1 74.344 343 79 5 1 339 710 1047 1.70e-171 504
Msa0973850 AT3G01310.2 74.344 343 79 5 1 339 704 1041 1.89e-171 504
Msa0973850 AT5G15070.3 77.178 241 47 4 1 237 702 938 6.55e-122 373

Find 86 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGGATCTAAACGATATT+TGG 0.183101 6_4:-6669389 None:intergenic
TTCGTATTTCATCGTTCTTA+TGG 0.228720 6_4:-6669309 None:intergenic
AAACGAGCTTAAGGCTCTTT+TGG 0.229544 6_4:+6671545 Msa0973850:three_prime_UTR
GGAGCACACACTGCCTATTA+TGG 0.249856 6_4:+6671251 Msa0973850:CDS
TGTTCTTCGATATTGCAATT+TGG 0.275233 6_4:+6670091 Msa0973850:CDS
TCAGATAGCTCGTCGGTTAT+TGG 0.277985 6_4:+6669156 Msa0973850:intron
AAAGAGCCTTAAGCTCGTTT+TGG 0.323711 6_4:-6671542 None:intergenic
TTTAAAATCACAGGTGGCTT+TGG 0.329779 6_4:+6670786 Msa0973850:intron
CAGATAGCTCGTCGGTTATT+GGG 0.339659 6_4:+6669157 Msa0973850:intron
TCGTATTTCATCGTTCTTAT+GGG 0.346138 6_4:-6669308 None:intergenic
CCTACTTCTTGCAGCCTCTC+TGG 0.354881 6_4:-6671276 None:intergenic
GGATTAATTCCATATTCATT+TGG 0.365971 6_4:-6667605 None:intergenic
TGAAAGCCATTGATTTGATT+AGG 0.377642 6_4:+6671756 Msa0973850:three_prime_UTR
TGGCTTTGGAAGATCCTAAA+AGG 0.386701 6_4:+6670800 Msa0973850:CDS
ACTTTATTACTAATTACTAA+TGG 0.387922 6_4:-6671635 None:intergenic
TTATTATTTGTCTTATTGTT+CGG 0.389199 6_4:+6671706 Msa0973850:three_prime_UTR
AATAAAAGAATTGCAAAGAA+TGG 0.389549 6_4:-6671669 None:intergenic
AGCCTCTCTGGACCCATAAT+AGG 0.395923 6_4:-6671264 None:intergenic
TTGAGCGTCTGGTAAATCTT+TGG 0.405667 6_4:+6671415 Msa0973850:CDS
TTCCTACCTAATCAAATCAA+TGG 0.405832 6_4:-6671762 None:intergenic
ATATCTCACATTAGAAACTA+TGG 0.418085 6_4:+6671302 Msa0973850:CDS
GAAAATCCTGCAGGTGTTGC+TGG 0.419344 6_4:-6671369 None:intergenic
AATGCACATCTTAATCTTGA+AGG 0.435268 6_4:+6667304 Msa0973850:CDS
GAGCACACACTGCCTATTAT+GGG 0.435358 6_4:+6671252 Msa0973850:CDS
GGTGTGATTCCAAATGAATA+TGG 0.442327 6_4:+6667596 Msa0973850:CDS
GATCATCCAAAACGAGCTTA+AGG 0.443853 6_4:+6671536 Msa0973850:three_prime_UTR
CTAGCGGAAAATAGTAAACT+TGG 0.451715 6_4:+6671452 Msa0973850:exon
TGAGGCAACATGGTTGCATC+AGG 0.455430 6_4:+6671230 Msa0973850:CDS
ATAAAAGAATTGCAAAGAAT+GGG 0.457730 6_4:-6671668 None:intergenic
CTTCTGCAGGCATGGCAAAC+GGG 0.465424 6_4:-6671338 None:intergenic
TAAATCGGCACCACGGCTGC+AGG 0.469067 6_4:-6670839 None:intergenic
TCTTCTGCAGGCATGGCAAA+CGG 0.469720 6_4:-6671339 None:intergenic
AATTTGGATGAATCTCTTCA+AGG 0.472365 6_4:+6670107 Msa0973850:CDS
GAGTGAAACATCAATGGATC+AGG 0.479352 6_4:+6669345 Msa0973850:CDS
CGTGTTCGCACATGGCGGTC+AGG 0.482109 6_4:-6669501 None:intergenic
TTGCATGAATCATAAACATC+AGG 0.485164 6_4:-6666507 None:intergenic
ATAGTCGATCTAAAGCATTA+TGG 0.486566 6_4:-6670148 None:intergenic
GCTCTTCTTCATCCTTTGCA+AGG 0.486869 6_4:-6665732 None:intergenic
ACATGAGCTACATTGTGCTT+AGG 0.492668 6_4:+6670192 Msa0973850:CDS
GGCTGCAGGTAAGCTCTATA+CGG 0.498660 6_4:-6670825 None:intergenic
GAAGAACATTCATGAGAGAA+TGG 0.499888 6_4:-6670076 None:intergenic
CACTCACTGATGTGAAGTAT+AGG 0.501838 6_4:-6669524 None:intergenic
CACTATGAGTGAAACATCAA+TGG 0.503309 6_4:+6669339 Msa0973850:CDS
GCTGGTGGAAAGTCTTCTGC+AGG 0.512926 6_4:-6671351 None:intergenic
ATCAATATTTGTCTTACCAA+GGG 0.516050 6_4:-6665809 None:intergenic
ATTATCCACGAACAATGAAA+AGG 0.516627 6_4:+6669258 Msa0973850:CDS
CCAGAGAGGCTGCAAGAAGT+AGG 0.520396 6_4:+6671276 Msa0973850:CDS
TTCCGCTAGTGTTTATGGAA+CGG 0.521846 6_4:-6671438 None:intergenic
AGTATATATGATTACCTCCA+AGG 0.522599 6_4:-6670866 None:intergenic
TTCTATTGATGTATGCCCGC+TGG 0.528533 6_4:+6665875 Msa0973850:exon
TTTCCACCAGCAACACCTGC+AGG 0.531530 6_4:+6671363 Msa0973850:CDS
TGGAAAGTCTTCTGCAGGCA+TGG 0.538145 6_4:-6671346 None:intergenic
CTAGGTAAAGCTGACTAAGA+AGG 0.539676 6_4:+6665690 Msa0973850:five_prime_UTR
GAACAATGAAAAGGAAGATA+CGG 0.539836 6_4:+6669267 Msa0973850:CDS
TGGATTACCTTGTGGTAGTG+AGG 0.542545 6_4:+6665849 Msa0973850:five_prime_UTR
GGATTACCTTGTGGTAGTGA+GGG 0.545421 6_4:+6665850 Msa0973850:five_prime_UTR
GATGTTGACCGTATAGCTGC+TGG 0.545919 6_4:+6665829 Msa0973850:five_prime_UTR
CTTCTTAGTCAGCTTTACCT+AGG 0.547454 6_4:-6665689 None:intergenic
AAGGTAATCCAGCAGCTATA+CGG 0.548742 6_4:-6665837 None:intergenic
CAAGAAGATCAAACAGAAGG+AGG 0.558818 6_4:-6671485 None:intergenic
ACATCTTAATCTTGAAGGAC+TGG 0.562710 6_4:+6667309 Msa0973850:CDS
CATCAATATTTGTCTTACCA+AGG 0.566081 6_4:-6665810 None:intergenic
TATTTGCAGGCTCTTGCTGA+TGG 0.573366 6_4:+6667575 Msa0973850:intron
AGTATAGGCGTGTTCGCACA+TGG 0.583944 6_4:-6669509 None:intergenic
TATGACCAAGCAAAAGCCCT+TGG 0.584663 6_4:+6665793 Msa0973850:five_prime_UTR
GTATATATGATTACCTCCAA+GGG 0.589767 6_4:-6670865 None:intergenic
ACAAGTTAAAATCCTTGCAA+AGG 0.589789 6_4:+6665720 Msa0973850:five_prime_UTR
AGTCAGCTTTACCTAGGCAA+AGG 0.591351 6_4:-6665683 None:intergenic
AAATAACCAGAAAATCCTGC+AGG 0.597925 6_4:-6671378 None:intergenic
AGACAAGAAGATCAAACAGA+AGG 0.599735 6_4:-6671488 None:intergenic
ATAGAGCTTACCTGCAGCCG+TGG 0.610801 6_4:+6670829 Msa0973850:CDS
AGAAAGATAGTGAGGCAACA+TGG 0.612625 6_4:+6671220 Msa0973850:CDS
GGACTTGTATAATGAACGCA+AGG 0.620031 6_4:+6665912 Msa0973850:CDS
GGCCGTTCCATAAACACTAG+CGG 0.623494 6_4:+6671436 Msa0973850:CDS
AATCCTGCAGGTGTTGCTGG+TGG 0.627879 6_4:-6671366 None:intergenic
TTTCAATTCAGATAGCTCGT+CGG 0.636503 6_4:+6669149 Msa0973850:intron
AGATCGACTATGTCAAACAA+AGG 0.649931 6_4:+6670160 Msa0973850:CDS
ATAGCTGCTGGATTACCTTG+TGG 0.650961 6_4:+6665841 Msa0973850:five_prime_UTR
TGATGTGAGGAACACTCGAG+AGG 0.662888 6_4:+6669192 Msa0973850:CDS
CAATGAAAAGGAAGATACGG+AGG 0.679658 6_4:+6669270 Msa0973850:CDS
TTGGCAGAAGAAAGATAGTG+AGG 0.684198 6_4:+6671212 Msa0973850:intron
TAGGATGTTTGAGAATACAG+AGG 0.698094 6_4:+6670211 Msa0973850:CDS
TATATATGATTACCTCCAAG+GGG 0.708426 6_4:-6670864 None:intergenic
TGCCTATTATGGGTCCAGAG+AGG 0.715967 6_4:+6671262 Msa0973850:CDS
AGAAAACCCTCACTACCACA+AGG 0.717319 6_4:-6665856 None:intergenic
ATATATGATTACCTCCAAGG+GGG 0.776034 6_4:-6670863 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCTCTTTATATTAA+TGG - chr6_4:6666029-6666048 None:intergenic 10.0%
!! AATATAAAGAGAAAAAAAAA+AGG + chr6_4:6666031-6666050 Msa0973850:intron 10.0%
!! TTAAATCTTTAGTAAAAAAA+AGG + chr6_4:6666956-6666975 Msa0973850:intron 10.0%
!!! TAATATTTTTATAAGGAAAT+AGG + chr6_4:6667835-6667854 Msa0973850:intron 10.0%
!!! ATATATACTTATATGTATTT+TGG + chr6_4:6670880-6670899 Msa0973850:intron 10.0%
!!! CATATATTTTCTTAATTCTT+AGG + chr6_4:6666151-6666170 Msa0973850:intron 15.0%
!!! TACTGATAAAATGATTTTAA+TGG + chr6_4:6666285-6666304 Msa0973850:intron 15.0%
!!! ACTGATAAAATGATTTTAAT+GGG + chr6_4:6666286-6666305 Msa0973850:intron 15.0%
!! TCAATAATAGATTTGTAATA+AGG + chr6_4:6668050-6668069 Msa0973850:intron 15.0%
!!! ATTTTTTTTTTTCTTCTGAA+GGG + chr6_4:6668261-6668280 Msa0973850:intron 15.0%
!! ATCAATCCAATATTAAATTA+GGG - chr6_4:6668927-6668946 None:intergenic 15.0%
!! AAATAATCACATTATGAAAT+AGG + chr6_4:6668984-6669003 Msa0973850:intron 15.0%
!!! TACCTATTTATTTAAAGTTA+TGG + chr6_4:6669101-6669120 Msa0973850:intron 15.0%
!! AACTTTATCATATCAATAAA+TGG - chr6_4:6671130-6671149 None:intergenic 15.0%
!! ACTTTATTACTAATTACTAA+TGG - chr6_4:6671638-6671657 None:intergenic 15.0%
!!! TTATTATTTGTCTTATTGTT+CGG + chr6_4:6671706-6671725 Msa0973850:three_prime_UTR 15.0%
!! CAAAACAAGTAAAAGAAAAA+TGG - chr6_4:6665967-6665986 None:intergenic 20.0%
!! TATATTCACATTGTTAGAAT+TGG + chr6_4:6665999-6666018 Msa0973850:intron 20.0%
!!! ATTTTATCAGTAGTTTAACA+TGG - chr6_4:6666277-6666296 None:intergenic 20.0%
!! TTTAGACATCTGTTATTATA+AGG - chr6_4:6667019-6667038 None:intergenic 20.0%
!!! TTTGAGTTTGAAGAAAATAT+TGG + chr6_4:6667197-6667216 Msa0973850:intron 20.0%
!! AATATTAACTAATCACACAA+AGG - chr6_4:6667252-6667271 None:intergenic 20.0%
!! AAATTTAAACGCATATCAAA+GGG - chr6_4:6667447-6667466 None:intergenic 20.0%
!! AAAATTTAAACGCATATCAA+AGG - chr6_4:6667448-6667467 None:intergenic 20.0%
!! TGAATATTTGTAAAGTTTAG+TGG - chr6_4:6667911-6667930 None:intergenic 20.0%
!! AAAAGGAATTATATACAGAA+AGG - chr6_4:6668153-6668172 None:intergenic 20.0%
!!! TTTATTAACTTCTTTGACTT+GGG - chr6_4:6668219-6668238 None:intergenic 20.0%
!!! TTTTATTAACTTCTTTGACT+TGG - chr6_4:6668220-6668239 None:intergenic 20.0%
!! TAATAAAACCATATCAATGA+AGG + chr6_4:6668232-6668251 Msa0973850:intron 20.0%
!!! GATTTTTTTTTTTCTTCTGA+AGG + chr6_4:6668260-6668279 Msa0973850:intron 20.0%
!!! CTTTTAGAATCTGATTATTT+CGG + chr6_4:6668604-6668623 Msa0973850:intron 20.0%
!! TAAAAGGAATAAAAAACTCA+TGG - chr6_4:6668660-6668679 None:intergenic 20.0%
!!! TTGTAAAAAAACTTTTCCTT+TGG - chr6_4:6668791-6668810 None:intergenic 20.0%
!! GGATATTAATCTTATAATCA+AGG - chr6_4:6668894-6668913 None:intergenic 20.0%
!! TCAATCCAATATTAAATTAG+GGG - chr6_4:6668926-6668945 None:intergenic 20.0%
!! CATCAATCCAATATTAAATT+AGG - chr6_4:6668928-6668947 None:intergenic 20.0%
!!! AATAAAGACCAATTTTTAGA+AGG - chr6_4:6669039-6669058 None:intergenic 20.0%
!! ACTTGAGTATTAAGAAAAAT+TGG + chr6_4:6669688-6669707 Msa0973850:intron 20.0%
!! TTCGTTTGATTAAATGTATT+TGG + chr6_4:6669867-6669886 Msa0973850:intron 20.0%
!! TCGTTTGATTAAATGTATTT+GGG + chr6_4:6669868-6669887 Msa0973850:intron 20.0%
!!! TGATTTTAACTAGTTGAATA+AGG + chr6_4:6669928-6669947 Msa0973850:intron 20.0%
!! TAGGCAAATATTAGTAAATT+AGG + chr6_4:6670647-6670666 Msa0973850:intron 20.0%
!! AGGCAAATATTAGTAAATTA+GGG + chr6_4:6670648-6670667 Msa0973850:intron 20.0%
!! AATTCCATAAAAAGTTCATT+AGG + chr6_4:6670972-6670991 Msa0973850:intron 20.0%
!! ATAAAAGAATTGCAAAGAAT+GGG - chr6_4:6671671-6671690 None:intergenic 20.0%
!! AATAAAAGAATTGCAAAGAA+TGG - chr6_4:6671672-6671691 None:intergenic 20.0%
! ATCAATATTTGTCTTACCAA+GGG - chr6_4:6665812-6665831 None:intergenic 25.0%
! AAGGAGTAAGCATTATTATT+TGG + chr6_4:6665931-6665950 Msa0973850:intron 25.0%
! AGTTAAAACTCATTACATTC+TGG + chr6_4:6666108-6666127 Msa0973850:intron 25.0%
! TACATGTTTGTATGCATAAT+TGG + chr6_4:6666426-6666445 Msa0973850:intron 25.0%
!! TGAATTGAAAAAAGTTTTCG+TGG + chr6_4:6666666-6666685 Msa0973850:intron 25.0%
! TTGTATCCAAACAAAATGTT+TGG - chr6_4:6666868-6666887 None:intergenic 25.0%
! TTGTTTGGATACAAGATAAT+AGG + chr6_4:6666874-6666893 Msa0973850:intron 25.0%
!!! CAGATGTCTAAATTTTAACT+TGG + chr6_4:6667027-6667046 Msa0973850:intron 25.0%
! ATATAAGACAGATACTAACA+AGG + chr6_4:6667409-6667428 Msa0973850:intron 25.0%
!!! CATAGTTGATAAATATACAG+AGG - chr6_4:6667507-6667526 None:intergenic 25.0%
! CTCTGTATATTTATCAACTA+TGG + chr6_4:6667505-6667524 Msa0973850:intron 25.0%
! TGTATATTTATCAACTATGG+CGG + chr6_4:6667508-6667527 Msa0973850:intron 25.0%
! AATATATTGGTAGAGTAATC+AGG - chr6_4:6667559-6667578 None:intergenic 25.0%
! GGATTAATTCCATATTCATT+TGG - chr6_4:6667608-6667627 None:intergenic 25.0%
! TGCAATGTTAAATGACATTT+GGG - chr6_4:6667683-6667702 None:intergenic 25.0%
! TTGCAATGTTAAATGACATT+TGG - chr6_4:6667684-6667703 None:intergenic 25.0%
!! AATGATTGGAGGTATAAAAT+AGG - chr6_4:6667715-6667734 None:intergenic 25.0%
!! TTTTATCAATCGGAACATTT+TGG - chr6_4:6667953-6667972 None:intergenic 25.0%
!!! AGAGAAGTAGTTTTATCAAT+CGG - chr6_4:6667963-6667982 None:intergenic 25.0%
! GACTGTTAGGATATATAATA+GGG - chr6_4:6668032-6668051 None:intergenic 25.0%
! TGACTGTTAGGATATATAAT+AGG - chr6_4:6668033-6668052 None:intergenic 25.0%
!! CAAATCTATTATTGACTGTT+AGG - chr6_4:6668045-6668064 None:intergenic 25.0%
!! ATCAGATTCTAAAAGTCTTT+GGG - chr6_4:6668599-6668618 None:intergenic 25.0%
!! AATCAGATTCTAAAAGTCTT+TGG - chr6_4:6668600-6668619 None:intergenic 25.0%
!!! ATTTGTTTTTAGCAAATACG+AGG + chr6_4:6668634-6668653 Msa0973850:intron 25.0%
! GAAACATTGTGACTTATAAA+AGG - chr6_4:6668676-6668695 None:intergenic 25.0%
! TTAATCTTATAATCAAGGTG+TGG - chr6_4:6668889-6668908 None:intergenic 25.0%
! GATTTCCCCTAATTTAATAT+TGG + chr6_4:6668918-6668937 Msa0973850:intron 25.0%
! TTACTTCTCTTTGCATTTAA+AGG - chr6_4:6668963-6668982 None:intergenic 25.0%
! GTATTCTTAAAATGTATGCT+AGG + chr6_4:6669006-6669025 Msa0973850:intron 25.0%
!! GTTAAAGACCTTCTAAAAAT+TGG + chr6_4:6669028-6669047 Msa0973850:intron 25.0%
! GGCCATAACTTTAAATAAAT+AGG - chr6_4:6669106-6669125 None:intergenic 25.0%
! ACAGTAAAAACAAATTAAGC+AGG - chr6_4:6669130-6669149 None:intergenic 25.0%
!!! GAAAACTTTTAATTGATGTG+AGG + chr6_4:6669179-6669198 Msa0973850:CDS 25.0%
!!! CTGTGTTATAATTTTTTGTG+AGG + chr6_4:6669552-6669571 Msa0973850:intron 25.0%
! GATACAAATATTTCCAGTTT+AGG + chr6_4:6669630-6669649 Msa0973850:intron 25.0%
! TATTTCATTCATTCCTAAAC+TGG - chr6_4:6669646-6669665 None:intergenic 25.0%
! GGAATGAATGAAATAATTCT+TGG + chr6_4:6669651-6669670 Msa0973850:intron 25.0%
! TTCTTAATACTCAAGTCATT+AGG - chr6_4:6669684-6669703 None:intergenic 25.0%
!!! TTTTTTTTTTTTTGCGCACA+AGG - chr6_4:6669758-6669777 None:intergenic 25.0%
! AATCAAACGAATACTAACTA+CGG - chr6_4:6669858-6669877 None:intergenic 25.0%
!! TCTCTGCTAATTTTATTGAT+AGG + chr6_4:6670043-6670062 Msa0973850:intron 25.0%
! GTTTACCAAATTACGATATA+TGG + chr6_4:6670351-6670370 Msa0973850:intron 25.0%
!! CGTGTAATATGTTCTTTTAT+AGG + chr6_4:6670628-6670647 Msa0973850:intron 25.0%
!!! TTATCTGACTTTAAAATCAC+AGG + chr6_4:6670777-6670796 Msa0973850:intron 25.0%
! GAGACTATCATATCAATAAA+TGG - chr6_4:6671019-6671038 None:intergenic 25.0%
! TCAATAAATGGTATTCGAAT+AGG - chr6_4:6671118-6671137 None:intergenic 25.0%
! CTAATATATGCTGTGTTATA+TGG + chr6_4:6671189-6671208 Msa0973850:intron 25.0%
! ATATCTCACATTAGAAACTA+TGG + chr6_4:6671302-6671321 Msa0973850:CDS 25.0%
!!! TTGTTTCCAACAGTATTTTT+TGG - chr6_4:6671605-6671624 None:intergenic 25.0%
ACAAGTTAAAATCCTTGCAA+AGG + chr6_4:6665720-6665739 Msa0973850:five_prime_UTR 30.0%
CATCAATATTTGTCTTACCA+AGG - chr6_4:6665813-6665832 None:intergenic 30.0%
AAAACTCATTACATTCTGGT+AGG + chr6_4:6666112-6666131 Msa0973850:intron 30.0%
! TTTCAAATCACATTTTCCCA+TGG + chr6_4:6666365-6666384 Msa0973850:intron 30.0%
! TTCAAATCACATTTTCCCAT+GGG + chr6_4:6666366-6666385 Msa0973850:intron 30.0%
ATACAAACATGTAACCAGTA+AGG - chr6_4:6666419-6666438 None:intergenic 30.0%
TTGCATGAATCATAAACATC+AGG - chr6_4:6666510-6666529 None:intergenic 30.0%
! TTTTCGTGGTTGTCAATTTA+TGG + chr6_4:6666680-6666699 Msa0973850:intron 30.0%
TTTCGTGGTTGTCAATTTAT+GGG + chr6_4:6666681-6666700 Msa0973850:intron 30.0%
ATAAGCAACAAAAGACTGTT+GGG - chr6_4:6666742-6666761 None:intergenic 30.0%
AACAATGTACAAGAAATGTG+AGG - chr6_4:6666806-6666825 None:intergenic 30.0%
TTCTTGTACATTGTTTGCAT+TGG + chr6_4:6666811-6666830 Msa0973850:intron 30.0%
TCTTGTACATTGTTTGCATT+GGG + chr6_4:6666812-6666831 Msa0973850:intron 30.0%
! ATGTGACCAAACATTTTGTT+TGG + chr6_4:6666859-6666878 Msa0973850:intron 30.0%
ATACAAGATAATAGGCATCA+AGG + chr6_4:6666882-6666901 Msa0973850:intron 30.0%
! CATATCTGATATTGATGATC+TGG - chr6_4:6667150-6667169 None:intergenic 30.0%
GAGTTTGAAGAAAATATTGG+AGG + chr6_4:6667200-6667219 Msa0973850:intron 30.0%
AATGCACATCTTAATCTTGA+AGG + chr6_4:6667304-6667323 Msa0973850:CDS 30.0%
TACTCTACCAATATATTTGC+AGG + chr6_4:6667562-6667581 Msa0973850:intron 30.0%
!!! CCAATTTTTAGTTTCTGCTT+TGG - chr6_4:6667629-6667648 None:intergenic 30.0%
CCAAAGCAGAAACTAAAAAT+TGG + chr6_4:6667626-6667645 Msa0973850:CDS 30.0%
! GAAACTAAAAATTGGCTCAA+AGG + chr6_4:6667634-6667653 Msa0973850:CDS 30.0%
GCAATGTTAAATGACATTTG+GGG - chr6_4:6667682-6667701 None:intergenic 30.0%
TTAGGAACCAAGAAATTGAA+CGG + chr6_4:6667804-6667823 Msa0973850:intron 30.0%
TTCTATTCCGTTCAATTTCT+TGG - chr6_4:6667814-6667833 None:intergenic 30.0%
AGAGATTTCTCTATTGTGAA+GGG - chr6_4:6667886-6667905 None:intergenic 30.0%
TAGAGATTTCTCTATTGTGA+AGG - chr6_4:6667887-6667906 None:intergenic 30.0%
ACCTATTGCTATAGACTTTA+GGG - chr6_4:6668109-6668128 None:intergenic 30.0%
AACCTATTGCTATAGACTTT+AGG - chr6_4:6668110-6668129 None:intergenic 30.0%
TGTTAAAGCACACTGAAAAA+AGG - chr6_4:6668170-6668189 None:intergenic 30.0%
!! ATTGATTTTGCCATCCAAAA+AGG + chr6_4:6668337-6668356 Msa0973850:intron 30.0%
GAAAATTACACATGAATGGA+AGG - chr6_4:6668391-6668410 None:intergenic 30.0%
ACACGAAAATTACACATGAA+TGG - chr6_4:6668395-6668414 None:intergenic 30.0%
TAAGCAAAGATTGTAAGTCA+AGG + chr6_4:6668757-6668776 Msa0973850:intron 30.0%
AGTCAAGGATATATAACCAA+AGG + chr6_4:6668772-6668791 Msa0973850:intron 30.0%
TTAAATTAGGGGAAATCACT+GGG - chr6_4:6668915-6668934 None:intergenic 30.0%
ATTAAATTAGGGGAAATCAC+TGG - chr6_4:6668916-6668935 None:intergenic 30.0%
TTCTCTTTGCATTTAAAGGA+TGG - chr6_4:6668959-6668978 None:intergenic 30.0%
GTAAAAACAAATTAAGCAGG+TGG - chr6_4:6669127-6669146 None:intergenic 30.0%
! TCGTGGATAATGAATTTTCT+TGG - chr6_4:6669249-6669268 None:intergenic 30.0%
ATTATCCACGAACAATGAAA+AGG + chr6_4:6669258-6669277 Msa0973850:CDS 30.0%
GAACAATGAAAAGGAAGATA+CGG + chr6_4:6669267-6669286 Msa0973850:CDS 30.0%
!!! CTTATGGGAATTTTTTGACT+TGG - chr6_4:6669296-6669315 None:intergenic 30.0%
TCGTATTTCATCGTTCTTAT+GGG - chr6_4:6669311-6669330 None:intergenic 30.0%
TTCGTATTTCATCGTTCTTA+TGG - chr6_4:6669312-6669331 None:intergenic 30.0%
CTTTGGATCTAAACGATATT+TGG - chr6_4:6669392-6669411 None:intergenic 30.0%
TTAGATCCAAAGTGAATATC+AGG + chr6_4:6669400-6669419 Msa0973850:intron 30.0%
AGATAACCTGATATTCACTT+TGG - chr6_4:6669409-6669428 None:intergenic 30.0%
TAATCTATTTATTCTCCACC+AGG + chr6_4:6669460-6669479 Msa0973850:intron 30.0%
CATTGGTGTAATTTCACTTA+AGG + chr6_4:6669724-6669743 Msa0973850:intron 30.0%
CTTAATTTCAGAAGAAAGAC+AGG - chr6_4:6669792-6669811 None:intergenic 30.0%
ATCAAACGAATACTAACTAC+GGG - chr6_4:6669857-6669876 None:intergenic 30.0%
CTTATAGATATATGTGTGCT+CGG - chr6_4:6669961-6669980 None:intergenic 30.0%
TGTTCTTCGATATTGCAATT+TGG + chr6_4:6670091-6670110 Msa0973850:CDS 30.0%
AATTTGGATGAATCTCTTCA+AGG + chr6_4:6670107-6670126 Msa0973850:CDS 30.0%
! ATAGTCGATCTAAAGCATTA+TGG - chr6_4:6670151-6670170 None:intergenic 30.0%
!! ATTTGCTATGACTACAAATG+AGG - chr6_4:6670314-6670333 None:intergenic 30.0%
TTTGGTAAACTTCACTTGTT+AGG - chr6_4:6670341-6670360 None:intergenic 30.0%
ATATGCATAACTTTGCATCT+AGG - chr6_4:6670406-6670425 None:intergenic 30.0%
TAGATGCAAAGTTATGCATA+TGG + chr6_4:6670405-6670424 Msa0973850:intron 30.0%
TAAATGTGTATAACGAGAAC+AGG + chr6_4:6670505-6670524 Msa0973850:intron 30.0%
! ACAGGTTCTTTTCTAATGAT+TGG + chr6_4:6670523-6670542 Msa0973850:intron 30.0%
!!! AATATTTTGACAGTCAGAAC+AGG + chr6_4:6670594-6670613 Msa0973850:intron 30.0%
TATATATGATTACCTCCAAG+GGG - chr6_4:6670867-6670886 None:intergenic 30.0%
GTATATATGATTACCTCCAA+GGG - chr6_4:6670868-6670887 None:intergenic 30.0%
AGTATATATGATTACCTCCA+AGG - chr6_4:6670869-6670888 None:intergenic 30.0%
!!! TATTTTGGCTAAAAGCGTAA+AGG + chr6_4:6670895-6670914 Msa0973850:intron 30.0%
!!! ATTTTGGCTAAAAGCGTAAA+GGG + chr6_4:6670896-6670915 Msa0973850:intron 30.0%
TCATTCACCATTACTATATC+TGG + chr6_4:6670931-6670950 Msa0973850:intron 30.0%
TAACATGCCAGATATAGTAA+TGG - chr6_4:6670941-6670960 None:intergenic 30.0%
! TGAGCCTAATGAACTTTTTA+TGG - chr6_4:6670979-6670998 None:intergenic 30.0%
TATATGCTGTGTTATATGGT+TGG + chr6_4:6671193-6671212 Msa0973850:intron 30.0%
!! TCTTGTCTCATTTTAATGCA+AGG + chr6_4:6671503-6671522 Msa0973850:three_prime_UTR 30.0%
!!! CAACAGTATTTTTTGGTTGT+TGG - chr6_4:6671598-6671617 None:intergenic 30.0%
CAACAACCAAAAAATACTGT+TGG + chr6_4:6671596-6671615 Msa0973850:three_prime_UTR 30.0%
TGAGTTCAAGAAATTCCCAT+GGG - chr6_4:6666384-6666403 None:intergenic 35.0%
ATGAGTTCAAGAAATTCCCA+TGG - chr6_4:6666385-6666404 None:intergenic 35.0%
TGACATTATGTTTCTTGTGC+AGG + chr6_4:6666463-6666482 Msa0973850:intron 35.0%
ACCAGAACTTAGTCATTGTA+TGG + chr6_4:6666636-6666655 Msa0973850:intron 35.0%
ACCATACAATGACTAAGTTC+TGG - chr6_4:6666640-6666659 None:intergenic 35.0%
AGAACTTAGTCATTGTATGG+TGG + chr6_4:6666639-6666658 Msa0973850:intron 35.0%
GTGCTTGTTCTTAGATTTCA+AGG + chr6_4:6666703-6666722 Msa0973850:intron 35.0%
CATAAGCAACAAAAGACTGT+TGG - chr6_4:6666743-6666762 None:intergenic 35.0%
AATGTACAAGAAATGTGAGG+TGG - chr6_4:6666803-6666822 None:intergenic 35.0%
!! AGGTGAGTTTGCTATTGTTA+TGG - chr6_4:6666999-6667018 None:intergenic 35.0%
GTGAAACTGACTGTTAATTG+AGG + chr6_4:6667065-6667084 Msa0973850:intron 35.0%
ACATCTTAATCTTGAAGGAC+TGG + chr6_4:6667309-6667328 Msa0973850:CDS 35.0%
AGGTACATAAGAAACGTGTT+AGG + chr6_4:6667353-6667372 Msa0973850:intron 35.0%
GGTACATAAGAAACGTGTTA+GGG + chr6_4:6667354-6667373 Msa0973850:intron 35.0%
GGTGTGATTCCAAATGAATA+TGG + chr6_4:6667596-6667615 Msa0973850:CDS 35.0%
! TTTGGGGATTTTCATACAAC+AGG - chr6_4:6667666-6667685 None:intergenic 35.0%
AAGATTCGACTGTCAACATT+AGG + chr6_4:6667786-6667805 Msa0973850:intron 35.0%
GAGATTTCTCTATTGTGAAG+GGG - chr6_4:6667885-6667904 None:intergenic 35.0%
!! GAACATTTTGGAGGTAGAAA+GGG - chr6_4:6667941-6667960 None:intergenic 35.0%
! TATCAATCGGAACATTTTGG+AGG - chr6_4:6667950-6667969 None:intergenic 35.0%
! TTTAGGGCTATGATCATAGA+GGG - chr6_4:6668093-6668112 None:intergenic 35.0%
!! ATTAACTTCTTTGACTTGGG+CGG - chr6_4:6668216-6668235 None:intergenic 35.0%
AAACCATATCAATGAAGGCA+CGG + chr6_4:6668237-6668256 Msa0973850:intron 35.0%
ATAGTAATGTCATGTCTCCT+AGG + chr6_4:6668290-6668309 Msa0973850:intron 35.0%
GAATCTGATTATTTCGGTTC+TGG + chr6_4:6668610-6668629 Msa0973850:intron 35.0%
CAAAATTTGAACCTTCACTG+AGG - chr6_4:6668835-6668854 None:intergenic 35.0%
! GTGAAGGTTCAAATTTTGCT+TGG + chr6_4:6668837-6668856 Msa0973850:intron 35.0%
ATAATCAAGGTGTGGATACA+TGG - chr6_4:6668881-6668900 None:intergenic 35.0%
TTTCAATTCAGATAGCTCGT+CGG + chr6_4:6669149-6669168 Msa0973850:intron 35.0%
! ATCTTCCTTTTCATTGTTCG+TGG - chr6_4:6669266-6669285 None:intergenic 35.0%
CACTATGAGTGAAACATCAA+TGG + chr6_4:6669339-6669358 Msa0973850:CDS 35.0%
ACTTAAAATCACTCACAGGA+GGG - chr6_4:6669599-6669618 None:intergenic 35.0%
TACTTAAAATCACTCACAGG+AGG - chr6_4:6669600-6669619 None:intergenic 35.0%
!! TCCTGTGAGTGATTTTAAGT+AGG + chr6_4:6669599-6669618 Msa0973850:intron 35.0%
!! CCTGTGAGTGATTTTAAGTA+GGG + chr6_4:6669600-6669619 Msa0973850:intron 35.0%
TACTCAAGTCATTAGGTGAT+AGG - chr6_4:6669677-6669696 None:intergenic 35.0%
AAGTGAAATTACACCAATGC+AGG - chr6_4:6669723-6669742 None:intergenic 35.0%
TCAAACGAATACTAACTACG+GGG - chr6_4:6669856-6669875 None:intergenic 35.0%
CGAGCACACATATATCTATA+AGG + chr6_4:6669959-6669978 Msa0973850:intron 35.0%
GAAGAACATTCATGAGAGAA+TGG - chr6_4:6670079-6670098 None:intergenic 35.0%
AGATCGACTATGTCAAACAA+AGG + chr6_4:6670160-6670179 Msa0973850:CDS 35.0%
TAGGATGTTTGAGAATACAG+AGG + chr6_4:6670211-6670230 Msa0973850:CDS 35.0%
!!! AATACAGAGGTGTGTCATTT+TGG + chr6_4:6670224-6670243 Msa0973850:intron 35.0%
TTCCTTACTGTATTCCTAAG+TGG + chr6_4:6670254-6670273 Msa0973850:intron 35.0%
CCATGCCATATATCGTAATT+TGG - chr6_4:6670359-6670378 None:intergenic 35.0%
CCAAATTACGATATATGGCA+TGG + chr6_4:6670356-6670375 Msa0973850:intron 35.0%
AACTGTCATAAAACATCTCG+AGG - chr6_4:6670383-6670402 None:intergenic 35.0%
TCGTTATACACATTTAACCC+TGG - chr6_4:6670501-6670520 None:intergenic 35.0%
GACTGTCAAAATATTGTCAC+AGG - chr6_4:6670589-6670608 None:intergenic 35.0%
ACTCAGGAGATTTAACAAAG+TGG - chr6_4:6670684-6670703 None:intergenic 35.0%
TCATAAGCAGACAACTTAGT+TGG - chr6_4:6670720-6670739 None:intergenic 35.0%
!! TCTGACTTTAAAATCACAGG+TGG + chr6_4:6670780-6670799 Msa0973850:intron 35.0%
! TTTAAAATCACAGGTGGCTT+TGG + chr6_4:6670786-6670805 Msa0973850:intron 35.0%
ATATATGATTACCTCCAAGG+GGG - chr6_4:6670866-6670885 None:intergenic 35.0%
AAATAACCAGAAAATCCTGC+AGG - chr6_4:6671381-6671400 None:intergenic 35.0%
! CTATTTTCCGCTAGTGTTTA+TGG - chr6_4:6671446-6671465 None:intergenic 35.0%
CTAGCGGAAAATAGTAAACT+TGG + chr6_4:6671452-6671471 Msa0973850:exon 35.0%
AGACAAGAAGATCAAACAGA+AGG - chr6_4:6671491-6671510 None:intergenic 35.0%
!! GGCTCTTTTGGAAATTCTTT+TGG + chr6_4:6671557-6671576 Msa0973850:three_prime_UTR 35.0%
! TCTCAATTTTGCCTTTGCCT+AGG + chr6_4:6665672-6665691 Msa0973850:five_prime_UTR 40.0%
CTTCTTAGTCAGCTTTACCT+AGG - chr6_4:6665692-6665711 None:intergenic 40.0%
CTAGGTAAAGCTGACTAAGA+AGG + chr6_4:6665690-6665709 Msa0973850:five_prime_UTR 40.0%
AAGGTAATCCAGCAGCTATA+CGG - chr6_4:6665840-6665859 None:intergenic 40.0%
GGACTTGTATAATGAACGCA+AGG + chr6_4:6665912-6665931 Msa0973850:CDS 40.0%
TGGTACAAACATACTCGACA+TGG - chr6_4:6666257-6666276 None:intergenic 40.0%
AACATGTAACCAGTAAGGCA+CGG - chr6_4:6666414-6666433 None:intergenic 40.0%
ATTTAGCTGAACAACGCTCT+TGG - chr6_4:6666841-6666860 None:intergenic 40.0%
! TGAGCTTTTCAAAGTTGCTC+AGG + chr6_4:6667333-6667352 Msa0973850:CDS 40.0%
!! ACTTGTTGATGACTCCTTGA+TGG + chr6_4:6667468-6667487 Msa0973850:intron 40.0%
GCAAGAGCCTGCAAATATAT+TGG - chr6_4:6667572-6667591 None:intergenic 40.0%
CTCCAATCATTGAAGCTCAA+GGG + chr6_4:6667724-6667743 Msa0973850:intron 40.0%
AACCCTTGAGCTTCAATGAT+TGG - chr6_4:6667729-6667748 None:intergenic 40.0%
AGGAGAGAAATTCTCCTTCA+AGG + chr6_4:6667855-6667874 Msa0973850:intron 40.0%
!! GGAACATTTTGGAGGTAGAA+AGG - chr6_4:6667942-6667961 None:intergenic 40.0%
!! CTTTAGGGCTATGATCATAG+AGG - chr6_4:6668094-6668113 None:intergenic 40.0%
GCCCTAAAGTCTATAGCAAT+AGG + chr6_4:6668105-6668124 Msa0973850:intron 40.0%
! AACCATATCAATGAAGGCAC+GGG + chr6_4:6668238-6668257 Msa0973850:intron 40.0%
AACACAACATTCATGGACCT+AGG - chr6_4:6668310-6668329 None:intergenic 40.0%
CCTCGTAAACACAACATTCA+TGG - chr6_4:6668317-6668336 None:intergenic 40.0%
CCATGAATGTTGTGTTTACG+AGG + chr6_4:6668314-6668333 Msa0973850:intron 40.0%
TCAGAAAAATGCCTCAGTGA+AGG + chr6_4:6668821-6668840 Msa0973850:intron 40.0%
CAATGAAAAGGAAGATACGG+AGG + chr6_4:6669270-6669289 Msa0973850:CDS 40.0%
GAGTGAAACATCAATGGATC+AGG + chr6_4:6669345-6669364 Msa0973850:CDS 40.0%
TGTCTTCACATTTGCATACC+TGG - chr6_4:6669481-6669500 None:intergenic 40.0%
CACTCACTGATGTGAAGTAT+AGG - chr6_4:6669527-6669546 None:intergenic 40.0%
TTAAAATCACTCACAGGAGG+GGG - chr6_4:6669597-6669616 None:intergenic 40.0%
CTTAAAATCACTCACAGGAG+GGG - chr6_4:6669598-6669617 None:intergenic 40.0%
CCCTACTTAAAATCACTCAC+AGG - chr6_4:6669603-6669622 None:intergenic 40.0%
ACATGAGCTACATTGTGCTT+AGG + chr6_4:6670192-6670211 Msa0973850:CDS 40.0%
CACCACTTAGGAATACAGTA+AGG - chr6_4:6670259-6670278 None:intergenic 40.0%
CTTACTGTATTCCTAAGTGG+TGG + chr6_4:6670257-6670276 Msa0973850:intron 40.0%
TCATATAACGTCCACCACTT+AGG - chr6_4:6670271-6670290 None:intergenic 40.0%
!! AGTGGTGGACGTTATATGAA+TGG + chr6_4:6670272-6670291 Msa0973850:intron 40.0%
TTGTCACAGGTGATACTGAA+AGG - chr6_4:6670576-6670595 None:intergenic 40.0%
!! CAACTTAGTTGGTAAGCTGA+GGG - chr6_4:6670709-6670728 None:intergenic 40.0%
!! ACAACTTAGTTGGTAAGCTG+AGG - chr6_4:6670710-6670729 None:intergenic 40.0%
!! TGGCTTTGGAAGATCCTAAA+AGG + chr6_4:6670800-6670819 Msa0973850:CDS 40.0%
! AGCTCTATACGGTACCTTTT+AGG - chr6_4:6670817-6670836 None:intergenic 40.0%
TTGGCAGAAGAAAGATAGTG+AGG + chr6_4:6671212-6671231 Msa0973850:intron 40.0%
AGAAAGATAGTGAGGCAACA+TGG + chr6_4:6671220-6671239 Msa0973850:CDS 40.0%
TTGAGCGTCTGGTAAATCTT+TGG + chr6_4:6671415-6671434 Msa0973850:CDS 40.0%
TTCCGCTAGTGTTTATGGAA+CGG - chr6_4:6671441-6671460 None:intergenic 40.0%
CAAGAAGATCAAACAGAAGG+AGG - chr6_4:6671488-6671507 None:intergenic 40.0%
GATCATCCAAAACGAGCTTA+AGG + chr6_4:6671536-6671555 Msa0973850:three_prime_UTR 40.0%
! AAAGAGCCTTAAGCTCGTTT+TGG - chr6_4:6671545-6671564 None:intergenic 40.0%
! AAACGAGCTTAAGGCTCTTT+TGG + chr6_4:6671545-6671564 Msa0973850:three_prime_UTR 40.0%
AGTCAGCTTTACCTAGGCAA+AGG - chr6_4:6665686-6665705 None:intergenic 45.0%
GCTCTTCTTCATCCTTTGCA+AGG - chr6_4:6665735-6665754 None:intergenic 45.0%
! GCTTTTGCTTGGTCATAAGG+AGG - chr6_4:6665790-6665809 None:intergenic 45.0%
! AGGGCTTTTGCTTGGTCATA+AGG - chr6_4:6665793-6665812 None:intergenic 45.0%
TATGACCAAGCAAAAGCCCT+TGG + chr6_4:6665793-6665812 Msa0973850:five_prime_UTR 45.0%
! TCTTACCAAGGGCTTTTGCT+TGG - chr6_4:6665801-6665820 None:intergenic 45.0%
ATAGCTGCTGGATTACCTTG+TGG + chr6_4:6665841-6665860 Msa0973850:five_prime_UTR 45.0%
! TGGATTACCTTGTGGTAGTG+AGG + chr6_4:6665849-6665868 Msa0973850:five_prime_UTR 45.0%
! GGATTACCTTGTGGTAGTGA+GGG + chr6_4:6665850-6665869 Msa0973850:five_prime_UTR 45.0%
AGAAAACCCTCACTACCACA+AGG - chr6_4:6665859-6665878 None:intergenic 45.0%
TTCTATTGATGTATGCCCGC+TGG + chr6_4:6665875-6665894 Msa0973850:exon 45.0%
!! CCTTTCAAGCTTTTTCCAGC+GGG - chr6_4:6665893-6665912 None:intergenic 45.0%
!! CCCTTTCAAGCTTTTTCCAG+CGG - chr6_4:6665894-6665913 None:intergenic 45.0%
CCGCTGGAAAAAGCTTGAAA+GGG + chr6_4:6665891-6665910 Msa0973850:CDS 45.0%
ACATGTAACCAGTAAGGCAC+GGG - chr6_4:6666413-6666432 None:intergenic 45.0%
TCAGTTGACAACAGCTCAAC+AGG - chr6_4:6667099-6667118 None:intergenic 45.0%
GAAAGCAGTCATCACCATCA+AGG - chr6_4:6667485-6667504 None:intergenic 45.0%
TATTTGCAGGCTCTTGCTGA+TGG + chr6_4:6667575-6667594 Msa0973850:intron 45.0%
CCTTGAGCTTCAATGATTGG+AGG - chr6_4:6667726-6667745 None:intergenic 45.0%
CCTCCAATCATTGAAGCTCA+AGG + chr6_4:6667723-6667742 Msa0973850:intron 45.0%
TGTGAAGGGGAAATCCTTGA+AGG - chr6_4:6667872-6667891 None:intergenic 45.0%
TCATAGAGGGCTTCAGGAAA+GGG - chr6_4:6668080-6668099 None:intergenic 45.0%
ATCATAGAGGGCTTCAGGAA+AGG - chr6_4:6668081-6668100 None:intergenic 45.0%
CTATGATCATAGAGGGCTTC+AGG - chr6_4:6668086-6668105 None:intergenic 45.0%
ATCCCGTGCCTTCATTGATA+TGG - chr6_4:6668243-6668262 None:intergenic 45.0%
TGCCATCCAAAAAGGCTTAG+AGG + chr6_4:6668345-6668364 Msa0973850:intron 45.0%
! CACCTCTAAGCCTTTTTGGA+TGG - chr6_4:6668350-6668369 None:intergenic 45.0%
! GTTGCACCTCTAAGCCTTTT+TGG - chr6_4:6668354-6668373 None:intergenic 45.0%
! TCAGATAGCTCGTCGGTTAT+TGG + chr6_4:6669156-6669175 Msa0973850:intron 45.0%
! CAGATAGCTCGTCGGTTATT+GGG + chr6_4:6669157-6669176 Msa0973850:intron 45.0%
CTTCACATTTGCATACCTGG+TGG - chr6_4:6669478-6669497 None:intergenic 45.0%
! TTGGTGTTTGACACCTGCAT+TGG + chr6_4:6669707-6669726 Msa0973850:intron 45.0%
TGCAAATGAGCTGGATTCCA+GGG + chr6_4:6670481-6670500 Msa0973850:intron 45.0%
TACCTCCAAGGGGGATAAAT+CGG - chr6_4:6670857-6670876 None:intergenic 45.0%
AGACTCCTCGCTGATAAAGT+TGG - chr6_4:6671163-6671182 None:intergenic 45.0%
GAGCACACACTGCCTATTAT+GGG + chr6_4:6671252-6671271 Msa0973850:CDS 45.0%
! AAAAAGCATGCTTGAGCGTC+TGG + chr6_4:6671404-6671423 Msa0973850:CDS 45.0%
!!! ATAGAAATAATATTTTTATA+AGG + chr6_4:6667828-6667847 Msa0973850:intron 5.0%
GATGTTGACCGTATAGCTGC+TGG + chr6_4:6665829-6665848 Msa0973850:five_prime_UTR 50.0%
CCCGCTGGAAAAAGCTTGAA+AGG + chr6_4:6665890-6665909 Msa0973850:CDS 50.0%
CATGAATTCCCGTGCCTTAC+TGG + chr6_4:6666402-6666421 Msa0973850:intron 50.0%
TGATGTGAGGAACACTCGAG+AGG + chr6_4:6669192-6669211 Msa0973850:CDS 50.0%
AGTATAGGCGTGTTCGCACA+TGG - chr6_4:6669512-6669531 None:intergenic 50.0%
CAAGCTCTGTGCAAATGAGC+TGG + chr6_4:6670472-6670491 Msa0973850:intron 50.0%
GTGCAAATGAGCTGGATTCC+AGG + chr6_4:6670480-6670499 Msa0973850:intron 50.0%
GGCTGCAGGTAAGCTCTATA+CGG - chr6_4:6670828-6670847 None:intergenic 50.0%
TGCCTCCAACTTTATCAGCG+AGG + chr6_4:6671155-6671174 Msa0973850:intron 50.0%
CTCCTCGCTGATAAAGTTGG+AGG - chr6_4:6671160-6671179 None:intergenic 50.0%
TGAGGCAACATGGTTGCATC+AGG + chr6_4:6671230-6671249 Msa0973850:CDS 50.0%
GGAGCACACACTGCCTATTA+TGG + chr6_4:6671251-6671270 Msa0973850:CDS 50.0%
TGCCTATTATGGGTCCAGAG+AGG + chr6_4:6671262-6671281 Msa0973850:CDS 50.0%
AGCCTCTCTGGACCCATAAT+AGG - chr6_4:6671267-6671286 None:intergenic 50.0%
TCTTCTGCAGGCATGGCAAA+CGG - chr6_4:6671342-6671361 None:intergenic 50.0%
TGGAAAGTCTTCTGCAGGCA+TGG - chr6_4:6671349-6671368 None:intergenic 50.0%
! GAAAATCCTGCAGGTGTTGC+TGG - chr6_4:6671372-6671391 None:intergenic 50.0%
! GCAACACCTGCAGGATTTTC+TGG + chr6_4:6671372-6671391 Msa0973850:CDS 50.0%
GGCCGTTCCATAAACACTAG+CGG + chr6_4:6671436-6671455 Msa0973850:CDS 50.0%
!! ACTTCTTTGACTTGGGCGGC+TGG - chr6_4:6668212-6668231 None:intergenic 55.0%
ATAGGCGTGTTCGCACATGG+CGG - chr6_4:6669509-6669528 None:intergenic 55.0%
TGGTAAGCTGAGGGACACTC+AGG - chr6_4:6670700-6670719 None:intergenic 55.0%
ATAGAGCTTACCTGCAGCCG+TGG + chr6_4:6670829-6670848 Msa0973850:CDS 55.0%
AGGGGGATAAATCGGCACCA+CGG - chr6_4:6670849-6670868 None:intergenic 55.0%
!! TGGTGCCGATTTATCCCCCT+TGG + chr6_4:6670849-6670868 Msa0973850:CDS 55.0%
!! TGCCGATTTATCCCCCTTGG+AGG + chr6_4:6670852-6670871 Msa0973850:CDS 55.0%
CCTACTTCTTGCAGCCTCTC+TGG - chr6_4:6671279-6671298 None:intergenic 55.0%
CCAGAGAGGCTGCAAGAAGT+AGG + chr6_4:6671276-6671295 Msa0973850:CDS 55.0%
CTTCTGCAGGCATGGCAAAC+GGG - chr6_4:6671341-6671360 None:intergenic 55.0%
GCTGGTGGAAAGTCTTCTGC+AGG - chr6_4:6671354-6671373 None:intergenic 55.0%
TTTCCACCAGCAACACCTGC+AGG + chr6_4:6671363-6671382 Msa0973850:CDS 55.0%
!! AATCCTGCAGGTGTTGCTGG+TGG - chr6_4:6671369-6671388 None:intergenic 55.0%
TAAATCGGCACCACGGCTGC+AGG - chr6_4:6670842-6670861 None:intergenic 60.0%
CGTGTTCGCACATGGCGGTC+AGG - chr6_4:6669504-6669523 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 6665672 6671775 6665672 ID=Msa0973850;Name=Msa0973850
chr6_4 mRNA 6665672 6671775 6665672 ID=Msa0973850-mRNA-1;Parent=Msa0973850;Name=Msa0973850-mRNA-1;_AED=0.14;_eAED=0.14;_QI=211|0.88|0.8|1|0.88|0.8|10|320|339
chr6_4 exon 6665672 6665935 6665672 ID=Msa0973850-mRNA-1:exon:2685;Parent=Msa0973850-mRNA-1
chr6_4 exon 6666485 6666529 6666485 ID=Msa0973850-mRNA-1:exon:2686;Parent=Msa0973850-mRNA-1
chr6_4 exon 6667288 6667354 6667288 ID=Msa0973850-mRNA-1:exon:2687;Parent=Msa0973850-mRNA-1
chr6_4 exon 6667584 6667655 6667584 ID=Msa0973850-mRNA-1:exon:2688;Parent=Msa0973850-mRNA-1
chr6_4 exon 6669160 6669397 6669160 ID=Msa0973850-mRNA-1:exon:2689;Parent=Msa0973850-mRNA-1
chr6_4 exon 6669404 6669410 6669404 ID=Msa0973850-mRNA-1:exon:2690;Parent=Msa0973850-mRNA-1
chr6_4 exon 6669482 6669539 6669482 ID=Msa0973850-mRNA-1:exon:2691;Parent=Msa0973850-mRNA-1
chr6_4 exon 6670065 6670232 6670065 ID=Msa0973850-mRNA-1:exon:2692;Parent=Msa0973850-mRNA-1
chr6_4 exon 6670799 6670873 6670799 ID=Msa0973850-mRNA-1:exon:2693;Parent=Msa0973850-mRNA-1
chr6_4 exon 6671219 6671775 6671219 ID=Msa0973850-mRNA-1:exon:2694;Parent=Msa0973850-mRNA-1
chr6_4 five_prime_UTR 6665672 6665882 6665672 ID=Msa0973850-mRNA-1:five_prime_utr;Parent=Msa0973850-mRNA-1
chr6_4 CDS 6665883 6665935 6665883 ID=Msa0973850-mRNA-1:cds;Parent=Msa0973850-mRNA-1
chr6_4 CDS 6666485 6666529 6666485 ID=Msa0973850-mRNA-1:cds;Parent=Msa0973850-mRNA-1
chr6_4 CDS 6667288 6667354 6667288 ID=Msa0973850-mRNA-1:cds;Parent=Msa0973850-mRNA-1
chr6_4 CDS 6667584 6667655 6667584 ID=Msa0973850-mRNA-1:cds;Parent=Msa0973850-mRNA-1
chr6_4 CDS 6669160 6669397 6669160 ID=Msa0973850-mRNA-1:cds;Parent=Msa0973850-mRNA-1
chr6_4 CDS 6669404 6669410 6669404 ID=Msa0973850-mRNA-1:cds;Parent=Msa0973850-mRNA-1
chr6_4 CDS 6669482 6669539 6669482 ID=Msa0973850-mRNA-1:cds;Parent=Msa0973850-mRNA-1
chr6_4 CDS 6670065 6670232 6670065 ID=Msa0973850-mRNA-1:cds;Parent=Msa0973850-mRNA-1
chr6_4 CDS 6670799 6670873 6670799 ID=Msa0973850-mRNA-1:cds;Parent=Msa0973850-mRNA-1
chr6_4 CDS 6671219 6671455 6671219 ID=Msa0973850-mRNA-1:cds;Parent=Msa0973850-mRNA-1
chr6_4 three_prime_UTR 6671456 6671775 6671456 ID=Msa0973850-mRNA-1:three_prime_utr;Parent=Msa0973850-mRNA-1
Gene Sequence

>Msa0973850

ATGTATGCCCGCTGGAAAAAGCTTGAAAGGGACTTGTATAATGAACGCAAGGAGCGCTATAAAATCACTCAAATTCCTGATGTTTATGATTCATGCAAATATGATCTCTTGCATAATGCACATCTTAATCTTGAAGGACTGGATGAGCTTTTCAAAGTTGCTCAGGCTCTTGCTGATGGTGTGATTCCAAATGAATATGGAATTAATCCAAAGCAGAAACTAAAAATTGGCTCAAAGATAGCTCGTCGGTTATTGGGAAAACTTTTAATTGATGTGAGGAACACTCGAGAGGAAGCAATTAGTGTCGCAGAGCTAAAGAATAACCAAGAAAATTCATTATCCACGAACAATGAAAAGGAAGATACGGAGGCCAAGTCAAAAAATTCCCATAAGAACGATGAAATACGAAAATGCAGCACTATGAGTGAAACATCAATGGATCAGGACGATGATGATGATAAAGAGACCAAATATCATCCAAAGTATGCAAATGTGAAGACACCTGACCGCCATGTGCGAACACGCCTATACTTCACATCAGAATCACATATCCATTCTCTCATGAATGTTCTTCGATATTGCAATTTGGATGAATCTCTTCAAGGAGAAGAGAGTCTTGTTTGCCATAATGCTTTAGATCGACTATGTCAAACAAAGGAGCTAGACTACATGAGCTACATTGTGCTTAGGATGTTTGAGAATACAGAGGTGGCTTTGGAAGATCCTAAAAGGTACCGTATAGAGCTTACCTGCAGCCGTGGTGCCGATTTATCCCCCTTGGAGAAGAAAGATAGTGAGGCAACATGGTTGCATCAGGAGCACACACTGCCTATTATGGGTCCAGAGAGGCTGCAAGAAGTAGGTTCATATCTCACATTAGAAACTATGGAGAAAATGATTCGCCCGTTTGCCATGCCTGCAGAAGACTTTCCACCAGCAACACCTGCAGGATTTTCTGGTTATTTCACAAAAAGCATGCTTGAGCGTCTGGTAAATCTTTGGCCGTTCCATAAACACTAG

Protein sequence

>Msa0973850

MYARWKKLERDLYNERKERYKITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQALADGVIPNEYGINPKQKLKIGSKIARRLLGKLLIDVRNTREEAISVAELKNNQENSLSTNNEKEDTEAKSKNSHKNDEIRKCSTMSETSMDQDDDDDKETKYHPKYANVKTPDRHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEESLVCHNALDRLCQTKELDYMSYIVLRMFENTEVALEDPKRYRIELTCSRGADLSPLEKKDSEATWLHQEHTLPIMGPERLQEVGSYLTLETMEKMIRPFAMPAEDFPPATPAGFSGYFTKSMLERLVNLWPFHKH*