AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075820 MtrunA17_Chr1g0184761 95.935 123 5 0 15 137 15 137 3.91e-71 209
Msa0075820 MtrunA17_Chr7g0260701 76.642 137 31 1 1 137 1 136 6.53e-67 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075820 AT2G30570.1 63.043 138 45 3 1 137 1 133 7.41e-47 148

Find 68 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTAGATCAATGAAAATT+TGG 0.191888 1_2:-51406270 None:intergenic
TTGGTGTGTTCGGTCTTATC+TGG 0.197833 1_2:+51407563 Msa0075820:CDS
GTTTCATCCTCTCCTGTTCT+TGG 0.207350 1_2:+51406656 Msa0075820:CDS
ATTCATTTCAAGCAATTTAA+AGG 0.218602 1_2:-51407642 None:intergenic
AGTAAGTGTGGAGTTGATTA+TGG 0.234913 1_2:-51406543 None:intergenic
GGACTCAGCAACAACCTTCT+TGG 0.302937 1_2:+51407529 Msa0075820:CDS
CTACTTACTAGGACAAAGTT+TGG 0.308053 1_2:-51407853 None:intergenic
ACTTCACTTAAACTAGTATC+TGG 0.353675 1_2:+51406477 Msa0075820:five_prime_UTR
CTTCCCACCTTAGCCATTGT+TGG 0.376821 1_2:-51407337 None:intergenic
TTCATTTCAAGCAATTTAAA+GGG 0.388432 1_2:-51407641 None:intergenic
TAAGACCGAACACACCAAAA+AGG 0.399989 1_2:-51407558 None:intergenic
TCCACCAATGCCATAGCTGC+TGG 0.405742 1_2:-51407469 None:intergenic
GCGCCTGAGCTAAGTTTGTC+TGG 0.412858 1_2:-51407898 None:intergenic
CAAACTTTGTCCTAGTAAGT+AGG 0.421686 1_2:+51407854 Msa0075820:three_prime_UTR
GAAGGAACCGGGCTTCCCTT+TGG 0.425729 1_2:+51407508 Msa0075820:CDS
TTGCTTTCACTCACAGAAGA+AGG 0.432700 1_2:-51407385 None:intergenic
CTTGAAGAGGATGAAGAGTC+TGG 0.434178 1_2:+51407613 Msa0075820:CDS
AGAATGAGCACTGAAGGAAC+CGG 0.435090 1_2:+51407496 Msa0075820:CDS
TGGTGTGTTCGGTCTTATCT+GGG 0.435857 1_2:+51407564 Msa0075820:CDS
AAATTGCTTGAAATGAATCA+TGG 0.437775 1_2:+51407647 Msa0075820:exon
AAGAACAACATACCAAGAAC+AGG 0.443082 1_2:-51406668 None:intergenic
GGGAAGAGTGAGGTGTTCAA+TGG 0.445647 1_2:+51407354 Msa0075820:CDS
CCCAGCAGCTATGGCATTGG+TGG 0.451621 1_2:+51407468 Msa0075820:CDS
GGAGAAGGTTTGACGTAATG+TGG 0.452976 1_2:+51406304 Msa0075820:five_prime_UTR
TGTAACCAACCCTACTTACT+AGG 0.459632 1_2:-51407864 None:intergenic
AGCAACTCAAACATTGGAAT+GGG 0.465387 1_2:+51407403 Msa0075820:CDS
TCAGCAACAACCTTCTTGGT+TGG 0.473672 1_2:+51407533 Msa0075820:CDS
TGATCTAATTATGTTGATGA+AGG 0.476331 1_2:+51406282 Msa0075820:five_prime_UTR
GAGAAGGTTTGACGTAATGT+GGG 0.481221 1_2:+51406305 Msa0075820:five_prime_UTR
AGTGAAAGCAACTCAAACAT+TGG 0.493591 1_2:+51407397 Msa0075820:CDS
TATGTCAAGCCCAGCAGCTA+TGG 0.500612 1_2:+51407459 Msa0075820:CDS
AAGAGTGAGGTGTTCAATGG+AGG 0.507963 1_2:+51407357 Msa0075820:CDS
AAACTTTGTCCTAGTAAGTA+GGG 0.516609 1_2:+51407855 Msa0075820:three_prime_UTR
AGTTGCAGTGGTGGCTGAGA+TGG 0.527181 1_2:-51406588 None:intergenic
AAGCAACTCAAACATTGGAA+TGG 0.541259 1_2:+51407402 Msa0075820:CDS
CCACCAATGCCATAGCTGCT+GGG 0.545697 1_2:-51407468 None:intergenic
TTTGTCCTAGTAAGTAGGGT+TGG 0.546423 1_2:+51407859 Msa0075820:three_prime_UTR
GATAGATTGAAGCTCATGGT+TGG 0.546901 1_2:-51406401 None:intergenic
ATTGCCAACAATGGCTAAGG+TGG 0.548615 1_2:+51407333 Msa0075820:CDS
AGAGTGAGGTGTTCAATGGA+GGG 0.548761 1_2:+51407358 Msa0075820:CDS
TACGAGCTTAAGAAAAGAAG+AGG 0.550338 1_2:-51407746 None:intergenic
AATTAATAATATGAATGCAA+AGG 0.556194 1_2:-51406447 None:intergenic
AAGGTTGTTGCTGAGTCCAA+AGG 0.556907 1_2:-51407524 None:intergenic
GATCTAATTATGTTGATGAA+GGG 0.564980 1_2:+51406283 Msa0075820:five_prime_UTR
CAAGGATAGATTGAAGCTCA+TGG 0.568609 1_2:-51406405 None:intergenic
AAGACAGAAGAGAAGTAGCT+TGG 0.568665 1_2:+51406500 Msa0075820:five_prime_UTR
ATTATGTTGATGAAGGGAGA+AGG 0.569309 1_2:+51406289 Msa0075820:five_prime_UTR
TAAGTAGGGTTGGTTACACT+CGG 0.569484 1_2:+51407869 Msa0075820:three_prime_UTR
AAGCCCAGCAGCTATGGCAT+TGG 0.570815 1_2:+51407465 Msa0075820:CDS
GCTGAGTCCAAAGGGAAGCC+CGG 0.571088 1_2:-51407515 None:intergenic
AGGATTGCCAACAATGGCTA+AGG 0.571754 1_2:+51407330 Msa0075820:intron
AGGTTGTTGCTGAGTCCAAA+GGG 0.582023 1_2:-51407523 None:intergenic
GATGAAAGAATGAGCACTGA+AGG 0.583467 1_2:+51407490 Msa0075820:CDS
TGTCCATGCACCACAAAACA+AGG 0.587249 1_2:-51406423 None:intergenic
GAATGAGCACTGAAGGAACC+GGG 0.588005 1_2:+51407497 Msa0075820:CDS
CTACGCCTCGAGTCTTGAAG+AGG 0.588236 1_2:+51407600 Msa0075820:CDS
AGAAGGTTTGACGTAATGTG+GGG 0.589079 1_2:+51406306 Msa0075820:five_prime_UTR
GATCGATGCAGTTGCAGTGG+TGG 0.591753 1_2:-51406597 None:intergenic
TTATTCAGGATTGCCAACAA+TGG 0.611540 1_2:+51407324 Msa0075820:intron
TTCATCCTCTTCAAGACTCG+AGG 0.612569 1_2:-51407605 None:intergenic
AAAATAGATCACCCGACACG+TGG 0.629584 1_2:+51406344 Msa0075820:five_prime_UTR
TTGCCAACAATGGCTAAGGT+GGG 0.634166 1_2:+51407334 Msa0075820:CDS
CAACATACCAAGAACAGGAG+AGG 0.652090 1_2:-51406663 None:intergenic
TGGCTAAGGTGGGAAGAGTG+AGG 0.666585 1_2:+51407344 Msa0075820:CDS
GGTGATCGATGCAGTTGCAG+TGG 0.679468 1_2:-51406600 None:intergenic
AAGTAGGGTTGGTTACACTC+GGG 0.681699 1_2:+51407870 Msa0075820:three_prime_UTR
GAAGGTTTGACGTAATGTGG+GGG 0.685525 1_2:+51406307 Msa0075820:five_prime_UTR
GGAGAGGATGAAACTGCAAG+AGG 0.693611 1_2:-51406647 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAGATCAATGAAAATT+TGG - chr1_2:51406273-51406292 None:intergenic 15.0%
!! AATTAATAATATGAATGCAA+AGG - chr1_2:51406450-51406469 None:intergenic 15.0%
!! TACTGAAACAAAAATTAAAA+TGG + chr1_2:51406562-51406581 Msa0075820:exon 15.0%
!!! AGATATATATGTTTTAAGAT+TGG + chr1_2:51406817-51406836 Msa0075820:intron 15.0%
!!! TTTTTCATCATTACAAAATT+GGG - chr1_2:51407008-51407027 None:intergenic 15.0%
!!! TTATTTCATAACTTTTATTG+AGG + chr1_2:51407062-51407081 Msa0075820:intron 15.0%
!! TAATTAGATCAATGAAAATT+TGG - chr1_2:51406273-51406292 None:intergenic 15.0%
!! AATTAATAATATGAATGCAA+AGG - chr1_2:51406450-51406469 None:intergenic 15.0%
!! TACTGAAACAAAAATTAAAA+TGG + chr1_2:51406562-51406581 Msa0075820:exon 15.0%
!!! AGATATATATGTTTTAAGAT+TGG + chr1_2:51406817-51406836 Msa0075820:intron 15.0%
!!! TTTTTCATCATTACAAAATT+GGG - chr1_2:51407008-51407027 None:intergenic 15.0%
!!! TTATTTCATAACTTTTATTG+AGG + chr1_2:51407062-51407081 Msa0075820:intron 15.0%
!!! AATATTTAGGATGAAAATCA+AGG - chr1_2:51406694-51406713 None:intergenic 20.0%
!! TATCATGCTATTCAATATTT+AGG - chr1_2:51406707-51406726 None:intergenic 20.0%
!!! GTTTTTCATCATTACAAAAT+TGG - chr1_2:51407009-51407028 None:intergenic 20.0%
!!! TATTTGTCGATTTTTTTTCT+CGG + chr1_2:51407029-51407048 Msa0075820:intron 20.0%
!!! ATTTGAACCATTTTATACTA+TGG + chr1_2:51407104-51407123 Msa0075820:intron 20.0%
!!! AACATTCAATCATTTTATTC+AGG + chr1_2:51407310-51407329 Msa0075820:intron 20.0%
!! TTCATTTCAAGCAATTTAAA+GGG - chr1_2:51407644-51407663 None:intergenic 20.0%
!! ATTCATTTCAAGCAATTTAA+AGG - chr1_2:51407645-51407664 None:intergenic 20.0%
!!! AATATTTAGGATGAAAATCA+AGG - chr1_2:51406694-51406713 None:intergenic 20.0%
!! TATCATGCTATTCAATATTT+AGG - chr1_2:51406707-51406726 None:intergenic 20.0%
!!! GTTTTTCATCATTACAAAAT+TGG - chr1_2:51407009-51407028 None:intergenic 20.0%
!!! TATTTGTCGATTTTTTTTCT+CGG + chr1_2:51407029-51407048 Msa0075820:intron 20.0%
!!! ATTTGAACCATTTTATACTA+TGG + chr1_2:51407104-51407123 Msa0075820:intron 20.0%
!!! AACATTCAATCATTTTATTC+AGG + chr1_2:51407310-51407329 Msa0075820:intron 20.0%
!! TTCATTTCAAGCAATTTAAA+GGG - chr1_2:51407644-51407663 None:intergenic 20.0%
!! ATTCATTTCAAGCAATTTAA+AGG - chr1_2:51407645-51407664 None:intergenic 20.0%
!! TGATCTAATTATGTTGATGA+AGG + chr1_2:51406282-51406301 Msa0075820:five_prime_UTR 25.0%
!! GATCTAATTATGTTGATGAA+GGG + chr1_2:51406283-51406302 Msa0075820:five_prime_UTR 25.0%
!!! AATTTTTGTTTCAGTAAGTG+TGG - chr1_2:51406558-51406577 None:intergenic 25.0%
!! TTCTCTAGAAAACTCATTAT+TGG - chr1_2:51406773-51406792 None:intergenic 25.0%
!!! GAATTTTATTTGTACTTCTG+TGG + chr1_2:51406790-51406809 Msa0075820:intron 25.0%
! GATAAATATGAGAGACTATT+GGG - chr1_2:51406845-51406864 None:intergenic 25.0%
! TGATAAATATGAGAGACTAT+TGG - chr1_2:51406846-51406865 None:intergenic 25.0%
!!! GTTTTTGATTTTGTCAAACT+CGG + chr1_2:51406935-51406954 Msa0075820:intron 25.0%
!!! ATTTGTCGATTTTTTTTCTC+GGG + chr1_2:51407030-51407049 Msa0075820:intron 25.0%
!!! TTTACTCCATTTTTAATCGA+CGG + chr1_2:51407259-51407278 Msa0075820:intron 25.0%
! AAATTGCTTGAAATGAATCA+TGG + chr1_2:51407647-51407666 Msa0075820:exon 25.0%
!! TGATCTAATTATGTTGATGA+AGG + chr1_2:51406282-51406301 Msa0075820:five_prime_UTR 25.0%
!! GATCTAATTATGTTGATGAA+GGG + chr1_2:51406283-51406302 Msa0075820:five_prime_UTR 25.0%
!!! AATTTTTGTTTCAGTAAGTG+TGG - chr1_2:51406558-51406577 None:intergenic 25.0%
!! TTCTCTAGAAAACTCATTAT+TGG - chr1_2:51406773-51406792 None:intergenic 25.0%
!!! GAATTTTATTTGTACTTCTG+TGG + chr1_2:51406790-51406809 Msa0075820:intron 25.0%
! GATAAATATGAGAGACTATT+GGG - chr1_2:51406845-51406864 None:intergenic 25.0%
! TGATAAATATGAGAGACTAT+TGG - chr1_2:51406846-51406865 None:intergenic 25.0%
!!! GTTTTTGATTTTGTCAAACT+CGG + chr1_2:51406935-51406954 Msa0075820:intron 25.0%
!!! ATTTGTCGATTTTTTTTCTC+GGG + chr1_2:51407030-51407049 Msa0075820:intron 25.0%
!!! TTTACTCCATTTTTAATCGA+CGG + chr1_2:51407259-51407278 Msa0075820:intron 25.0%
! AAATTGCTTGAAATGAATCA+TGG + chr1_2:51407647-51407666 Msa0075820:exon 25.0%
!!! AATGATTTTTTTCCACGTGT+CGG - chr1_2:51406359-51406378 None:intergenic 30.0%
!!! TTCAATCTATCCTTGTTTTG+TGG + chr1_2:51406413-51406432 Msa0075820:five_prime_UTR 30.0%
ACTTCACTTAAACTAGTATC+TGG + chr1_2:51406477-51406496 Msa0075820:five_prime_UTR 30.0%
TTAGTGCATGTTTGATGTTA+CGG + chr1_2:51406882-51406901 Msa0075820:intron 30.0%
CAAAATCAAAAACCACATGT+TGG - chr1_2:51406928-51406947 None:intergenic 30.0%
TCATCATTACAAAATTGGGA+GGG - chr1_2:51407004-51407023 None:intergenic 30.0%
TTCATCATTACAAAATTGGG+AGG - chr1_2:51407005-51407024 None:intergenic 30.0%
!!! TTTGTCGATTTTTTTTCTCG+GGG + chr1_2:51407031-51407050 Msa0075820:intron 30.0%
AATCGAGCCATAGTATAAAA+TGG - chr1_2:51407114-51407133 None:intergenic 30.0%
! ATACTATGGCTCGATTATTT+TGG + chr1_2:51407118-51407137 Msa0075820:intron 30.0%
!!! TTATTTTGGCAATTCGATCA+CGG + chr1_2:51407132-51407151 Msa0075820:intron 30.0%
AAACTTTGTCCTAGTAAGTA+GGG + chr1_2:51407855-51407874 Msa0075820:three_prime_UTR 30.0%
!!! AATGATTTTTTTCCACGTGT+CGG - chr1_2:51406359-51406378 None:intergenic 30.0%
!!! TTCAATCTATCCTTGTTTTG+TGG + chr1_2:51406413-51406432 Msa0075820:five_prime_UTR 30.0%
ACTTCACTTAAACTAGTATC+TGG + chr1_2:51406477-51406496 Msa0075820:five_prime_UTR 30.0%
TTAGTGCATGTTTGATGTTA+CGG + chr1_2:51406882-51406901 Msa0075820:intron 30.0%
CAAAATCAAAAACCACATGT+TGG - chr1_2:51406928-51406947 None:intergenic 30.0%
TCATCATTACAAAATTGGGA+GGG - chr1_2:51407004-51407023 None:intergenic 30.0%
TTCATCATTACAAAATTGGG+AGG - chr1_2:51407005-51407024 None:intergenic 30.0%
!!! TTTGTCGATTTTTTTTCTCG+GGG + chr1_2:51407031-51407050 Msa0075820:intron 30.0%
AATCGAGCCATAGTATAAAA+TGG - chr1_2:51407114-51407133 None:intergenic 30.0%
! ATACTATGGCTCGATTATTT+TGG + chr1_2:51407118-51407137 Msa0075820:intron 30.0%
!!! TTATTTTGGCAATTCGATCA+CGG + chr1_2:51407132-51407151 Msa0075820:intron 30.0%
AAACTTTGTCCTAGTAAGTA+GGG + chr1_2:51407855-51407874 Msa0075820:three_prime_UTR 30.0%
! ATTATGTTGATGAAGGGAGA+AGG + chr1_2:51406289-51406308 Msa0075820:five_prime_UTR 35.0%
!!! ATGATTTTTTTCCACGTGTC+GGG - chr1_2:51406358-51406377 None:intergenic 35.0%
GACACGTGGAAAAAAATCAT+TGG + chr1_2:51406358-51406377 Msa0075820:five_prime_UTR 35.0%
! AGTAAGTGTGGAGTTGATTA+TGG - chr1_2:51406546-51406565 None:intergenic 35.0%
AAGAACAACATACCAAGAAC+AGG - chr1_2:51406671-51406690 None:intergenic 35.0%
ATTGTTGAAGATCCAACATG+TGG + chr1_2:51406913-51406932 Msa0075820:intron 35.0%
! AAACCTCCGTCGATTAAAAA+TGG - chr1_2:51407268-51407287 None:intergenic 35.0%
! ATTTTTAATCGACGGAGGTT+TGG + chr1_2:51407267-51407286 Msa0075820:intron 35.0%
TTATTCAGGATTGCCAACAA+TGG + chr1_2:51407324-51407343 Msa0075820:intron 35.0%
AGTGAAAGCAACTCAAACAT+TGG + chr1_2:51407397-51407416 Msa0075820:CDS 35.0%
AAGCAACTCAAACATTGGAA+TGG + chr1_2:51407402-51407421 Msa0075820:CDS 35.0%
AGCAACTCAAACATTGGAAT+GGG + chr1_2:51407403-51407422 Msa0075820:CDS 35.0%
TACGAGCTTAAGAAAAGAAG+AGG - chr1_2:51407749-51407768 None:intergenic 35.0%
CTACTTACTAGGACAAAGTT+TGG - chr1_2:51407856-51407875 None:intergenic 35.0%
CAAACTTTGTCCTAGTAAGT+AGG + chr1_2:51407854-51407873 Msa0075820:three_prime_UTR 35.0%
! ATTATGTTGATGAAGGGAGA+AGG + chr1_2:51406289-51406308 Msa0075820:five_prime_UTR 35.0%
!!! ATGATTTTTTTCCACGTGTC+GGG - chr1_2:51406358-51406377 None:intergenic 35.0%
GACACGTGGAAAAAAATCAT+TGG + chr1_2:51406358-51406377 Msa0075820:five_prime_UTR 35.0%
! AGTAAGTGTGGAGTTGATTA+TGG - chr1_2:51406546-51406565 None:intergenic 35.0%
AAGAACAACATACCAAGAAC+AGG - chr1_2:51406671-51406690 None:intergenic 35.0%
ATTGTTGAAGATCCAACATG+TGG + chr1_2:51406913-51406932 Msa0075820:intron 35.0%
! AAACCTCCGTCGATTAAAAA+TGG - chr1_2:51407268-51407287 None:intergenic 35.0%
! ATTTTTAATCGACGGAGGTT+TGG + chr1_2:51407267-51407286 Msa0075820:intron 35.0%
TTATTCAGGATTGCCAACAA+TGG + chr1_2:51407324-51407343 Msa0075820:intron 35.0%
AGTGAAAGCAACTCAAACAT+TGG + chr1_2:51407397-51407416 Msa0075820:CDS 35.0%
AAGCAACTCAAACATTGGAA+TGG + chr1_2:51407402-51407421 Msa0075820:CDS 35.0%
AGCAACTCAAACATTGGAAT+GGG + chr1_2:51407403-51407422 Msa0075820:CDS 35.0%
TACGAGCTTAAGAAAAGAAG+AGG - chr1_2:51407749-51407768 None:intergenic 35.0%
CTACTTACTAGGACAAAGTT+TGG - chr1_2:51407856-51407875 None:intergenic 35.0%
CAAACTTTGTCCTAGTAAGT+AGG + chr1_2:51407854-51407873 Msa0075820:three_prime_UTR 35.0%
GAGAAGGTTTGACGTAATGT+GGG + chr1_2:51406305-51406324 Msa0075820:five_prime_UTR 40.0%
AGAAGGTTTGACGTAATGTG+GGG + chr1_2:51406306-51406325 Msa0075820:five_prime_UTR 40.0%
GATAGATTGAAGCTCATGGT+TGG - chr1_2:51406404-51406423 None:intergenic 40.0%
CAAGGATAGATTGAAGCTCA+TGG - chr1_2:51406408-51406427 None:intergenic 40.0%
!!! TATCCTTGTTTTGTGGTGCA+TGG + chr1_2:51406420-51406439 Msa0075820:five_prime_UTR 40.0%
AAGACAGAAGAGAAGTAGCT+TGG + chr1_2:51406500-51406519 Msa0075820:five_prime_UTR 40.0%
! TCTTTTGTGCAAGACATGCA+CGG - chr1_2:51406625-51406644 None:intergenic 40.0%
GTCCTGATTCAAGCAATTGA+AGG + chr1_2:51407159-51407178 Msa0075820:intron 40.0%
CACCTTCAATTGCTTGAATC+AGG - chr1_2:51407164-51407183 None:intergenic 40.0%
CTGATTCAAGCAATTGAAGG+TGG + chr1_2:51407162-51407181 Msa0075820:intron 40.0%
TGTCTCGCTCGATTGATATT+TGG + chr1_2:51407202-51407221 Msa0075820:intron 40.0%
!! ACTCCATTTTTAATCGACGG+AGG + chr1_2:51407262-51407281 Msa0075820:intron 40.0%
TTGCTTTCACTCACAGAAGA+AGG - chr1_2:51407388-51407407 None:intergenic 40.0%
!! GATGAAAGAATGAGCACTGA+AGG + chr1_2:51407490-51407509 Msa0075820:CDS 40.0%
CAAAAAGGATCCAACCAAGA+AGG - chr1_2:51407546-51407565 None:intergenic 40.0%
! CTTCTTGGTTGGATCCTTTT+TGG + chr1_2:51407544-51407563 Msa0075820:CDS 40.0%
!! TGGATCCTTTTTGGTGTGTT+CGG + chr1_2:51407553-51407572 Msa0075820:CDS 40.0%
TAAGACCGAACACACCAAAA+AGG - chr1_2:51407561-51407580 None:intergenic 40.0%
TTTGTCCTAGTAAGTAGGGT+TGG + chr1_2:51407859-51407878 Msa0075820:three_prime_UTR 40.0%
TGTAACCAACCCTACTTACT+AGG - chr1_2:51407867-51407886 None:intergenic 40.0%
!! TAAGTAGGGTTGGTTACACT+CGG + chr1_2:51407869-51407888 Msa0075820:three_prime_UTR 40.0%
GAGAAGGTTTGACGTAATGT+GGG + chr1_2:51406305-51406324 Msa0075820:five_prime_UTR 40.0%
AGAAGGTTTGACGTAATGTG+GGG + chr1_2:51406306-51406325 Msa0075820:five_prime_UTR 40.0%
GATAGATTGAAGCTCATGGT+TGG - chr1_2:51406404-51406423 None:intergenic 40.0%
CAAGGATAGATTGAAGCTCA+TGG - chr1_2:51406408-51406427 None:intergenic 40.0%
!!! TATCCTTGTTTTGTGGTGCA+TGG + chr1_2:51406420-51406439 Msa0075820:five_prime_UTR 40.0%
AAGACAGAAGAGAAGTAGCT+TGG + chr1_2:51406500-51406519 Msa0075820:five_prime_UTR 40.0%
! TCTTTTGTGCAAGACATGCA+CGG - chr1_2:51406625-51406644 None:intergenic 40.0%
GTCCTGATTCAAGCAATTGA+AGG + chr1_2:51407159-51407178 Msa0075820:intron 40.0%
CACCTTCAATTGCTTGAATC+AGG - chr1_2:51407164-51407183 None:intergenic 40.0%
CTGATTCAAGCAATTGAAGG+TGG + chr1_2:51407162-51407181 Msa0075820:intron 40.0%
TGTCTCGCTCGATTGATATT+TGG + chr1_2:51407202-51407221 Msa0075820:intron 40.0%
!! ACTCCATTTTTAATCGACGG+AGG + chr1_2:51407262-51407281 Msa0075820:intron 40.0%
TTGCTTTCACTCACAGAAGA+AGG - chr1_2:51407388-51407407 None:intergenic 40.0%
!! GATGAAAGAATGAGCACTGA+AGG + chr1_2:51407490-51407509 Msa0075820:CDS 40.0%
CAAAAAGGATCCAACCAAGA+AGG - chr1_2:51407546-51407565 None:intergenic 40.0%
! CTTCTTGGTTGGATCCTTTT+TGG + chr1_2:51407544-51407563 Msa0075820:CDS 40.0%
!! TGGATCCTTTTTGGTGTGTT+CGG + chr1_2:51407553-51407572 Msa0075820:CDS 40.0%
TAAGACCGAACACACCAAAA+AGG - chr1_2:51407561-51407580 None:intergenic 40.0%
TTTGTCCTAGTAAGTAGGGT+TGG + chr1_2:51407859-51407878 Msa0075820:three_prime_UTR 40.0%
TGTAACCAACCCTACTTACT+AGG - chr1_2:51407867-51407886 None:intergenic 40.0%
!! TAAGTAGGGTTGGTTACACT+CGG + chr1_2:51407869-51407888 Msa0075820:three_prime_UTR 40.0%
GGAGAAGGTTTGACGTAATG+TGG + chr1_2:51406304-51406323 Msa0075820:five_prime_UTR 45.0%
GAAGGTTTGACGTAATGTGG+GGG + chr1_2:51406307-51406326 Msa0075820:five_prime_UTR 45.0%
CGTAATGTGGGGGTAACAAT+TGG + chr1_2:51406317-51406336 Msa0075820:five_prime_UTR 45.0%
AAAATAGATCACCCGACACG+TGG + chr1_2:51406344-51406363 Msa0075820:five_prime_UTR 45.0%
TGTCCATGCACCACAAAACA+AGG - chr1_2:51406426-51406445 None:intergenic 45.0%
! CTTTTGTGCAAGACATGCAC+GGG - chr1_2:51406624-51406643 None:intergenic 45.0%
GTTTCATCCTCTCCTGTTCT+TGG + chr1_2:51406656-51406675 Msa0075820:CDS 45.0%
CAACATACCAAGAACAGGAG+AGG - chr1_2:51406666-51406685 None:intergenic 45.0%
CAAAATTGGGAGGGTAGTCT+TGG - chr1_2:51406995-51407014 None:intergenic 45.0%
AGGATTGCCAACAATGGCTA+AGG + chr1_2:51407330-51407349 Msa0075820:intron 45.0%
ATTGCCAACAATGGCTAAGG+TGG + chr1_2:51407333-51407352 Msa0075820:CDS 45.0%
TTGCCAACAATGGCTAAGGT+GGG + chr1_2:51407334-51407353 Msa0075820:CDS 45.0%
! AAGAGTGAGGTGTTCAATGG+AGG + chr1_2:51407357-51407376 Msa0075820:CDS 45.0%
! AGAGTGAGGTGTTCAATGGA+GGG + chr1_2:51407358-51407377 Msa0075820:CDS 45.0%
!! AGAATGAGCACTGAAGGAAC+CGG + chr1_2:51407496-51407515 Msa0075820:CDS 45.0%
AGGTTGTTGCTGAGTCCAAA+GGG - chr1_2:51407526-51407545 None:intergenic 45.0%
AAGGTTGTTGCTGAGTCCAA+AGG - chr1_2:51407527-51407546 None:intergenic 45.0%
TCAGCAACAACCTTCTTGGT+TGG + chr1_2:51407533-51407552 Msa0075820:CDS 45.0%
! TTGGTGTGTTCGGTCTTATC+TGG + chr1_2:51407563-51407582 Msa0075820:CDS 45.0%
! TGGTGTGTTCGGTCTTATCT+GGG + chr1_2:51407564-51407583 Msa0075820:CDS 45.0%
TTCATCCTCTTCAAGACTCG+AGG - chr1_2:51407608-51407627 None:intergenic 45.0%
CTTGAAGAGGATGAAGAGTC+TGG + chr1_2:51407613-51407632 Msa0075820:CDS 45.0%
!! AAGTAGGGTTGGTTACACTC+GGG + chr1_2:51407870-51407889 Msa0075820:three_prime_UTR 45.0%
GGAGAAGGTTTGACGTAATG+TGG + chr1_2:51406304-51406323 Msa0075820:five_prime_UTR 45.0%
GAAGGTTTGACGTAATGTGG+GGG + chr1_2:51406307-51406326 Msa0075820:five_prime_UTR 45.0%
CGTAATGTGGGGGTAACAAT+TGG + chr1_2:51406317-51406336 Msa0075820:five_prime_UTR 45.0%
AAAATAGATCACCCGACACG+TGG + chr1_2:51406344-51406363 Msa0075820:five_prime_UTR 45.0%
TGTCCATGCACCACAAAACA+AGG - chr1_2:51406426-51406445 None:intergenic 45.0%
! CTTTTGTGCAAGACATGCAC+GGG - chr1_2:51406624-51406643 None:intergenic 45.0%
GTTTCATCCTCTCCTGTTCT+TGG + chr1_2:51406656-51406675 Msa0075820:CDS 45.0%
CAACATACCAAGAACAGGAG+AGG - chr1_2:51406666-51406685 None:intergenic 45.0%
CAAAATTGGGAGGGTAGTCT+TGG - chr1_2:51406995-51407014 None:intergenic 45.0%
AGGATTGCCAACAATGGCTA+AGG + chr1_2:51407330-51407349 Msa0075820:intron 45.0%
ATTGCCAACAATGGCTAAGG+TGG + chr1_2:51407333-51407352 Msa0075820:CDS 45.0%
TTGCCAACAATGGCTAAGGT+GGG + chr1_2:51407334-51407353 Msa0075820:CDS 45.0%
! AAGAGTGAGGTGTTCAATGG+AGG + chr1_2:51407357-51407376 Msa0075820:CDS 45.0%
! AGAGTGAGGTGTTCAATGGA+GGG + chr1_2:51407358-51407377 Msa0075820:CDS 45.0%
!! AGAATGAGCACTGAAGGAAC+CGG + chr1_2:51407496-51407515 Msa0075820:CDS 45.0%
AGGTTGTTGCTGAGTCCAAA+GGG - chr1_2:51407526-51407545 None:intergenic 45.0%
AAGGTTGTTGCTGAGTCCAA+AGG - chr1_2:51407527-51407546 None:intergenic 45.0%
TCAGCAACAACCTTCTTGGT+TGG + chr1_2:51407533-51407552 Msa0075820:CDS 45.0%
! TTGGTGTGTTCGGTCTTATC+TGG + chr1_2:51407563-51407582 Msa0075820:CDS 45.0%
! TGGTGTGTTCGGTCTTATCT+GGG + chr1_2:51407564-51407583 Msa0075820:CDS 45.0%
TTCATCCTCTTCAAGACTCG+AGG - chr1_2:51407608-51407627 None:intergenic 45.0%
CTTGAAGAGGATGAAGAGTC+TGG + chr1_2:51407613-51407632 Msa0075820:CDS 45.0%
!! AAGTAGGGTTGGTTACACTC+GGG + chr1_2:51407870-51407889 Msa0075820:three_prime_UTR 45.0%
GGAGAGGATGAAACTGCAAG+AGG - chr1_2:51406650-51406669 None:intergenic 50.0%
CGACGGAGGTTTGGATGATT+TGG + chr1_2:51407276-51407295 Msa0075820:intron 50.0%
CTTCCCACCTTAGCCATTGT+TGG - chr1_2:51407340-51407359 None:intergenic 50.0%
! GGGAAGAGTGAGGTGTTCAA+TGG + chr1_2:51407354-51407373 Msa0075820:CDS 50.0%
TATGTCAAGCCCAGCAGCTA+TGG + chr1_2:51407459-51407478 Msa0075820:CDS 50.0%
!! GAATGAGCACTGAAGGAACC+GGG + chr1_2:51407497-51407516 Msa0075820:CDS 50.0%
GGACTCAGCAACAACCTTCT+TGG + chr1_2:51407529-51407548 Msa0075820:CDS 50.0%
GGAGAGGATGAAACTGCAAG+AGG - chr1_2:51406650-51406669 None:intergenic 50.0%
CGACGGAGGTTTGGATGATT+TGG + chr1_2:51407276-51407295 Msa0075820:intron 50.0%
CTTCCCACCTTAGCCATTGT+TGG - chr1_2:51407340-51407359 None:intergenic 50.0%
! GGGAAGAGTGAGGTGTTCAA+TGG + chr1_2:51407354-51407373 Msa0075820:CDS 50.0%
TATGTCAAGCCCAGCAGCTA+TGG + chr1_2:51407459-51407478 Msa0075820:CDS 50.0%
!! GAATGAGCACTGAAGGAACC+GGG + chr1_2:51407497-51407516 Msa0075820:CDS 50.0%
GGACTCAGCAACAACCTTCT+TGG + chr1_2:51407529-51407548 Msa0075820:CDS 50.0%
AGTTGCAGTGGTGGCTGAGA+TGG - chr1_2:51406591-51406610 None:intergenic 55.0%
GATCGATGCAGTTGCAGTGG+TGG - chr1_2:51406600-51406619 None:intergenic 55.0%
GGTGATCGATGCAGTTGCAG+TGG - chr1_2:51406603-51406622 None:intergenic 55.0%
TGGCTAAGGTGGGAAGAGTG+AGG + chr1_2:51407344-51407363 Msa0075820:CDS 55.0%
AAGCCCAGCAGCTATGGCAT+TGG + chr1_2:51407465-51407484 Msa0075820:CDS 55.0%
CCACCAATGCCATAGCTGCT+GGG - chr1_2:51407471-51407490 None:intergenic 55.0%
TCCACCAATGCCATAGCTGC+TGG - chr1_2:51407472-51407491 None:intergenic 55.0%
CTACGCCTCGAGTCTTGAAG+AGG + chr1_2:51407600-51407619 Msa0075820:CDS 55.0%
AGTTGCAGTGGTGGCTGAGA+TGG - chr1_2:51406591-51406610 None:intergenic 55.0%
GATCGATGCAGTTGCAGTGG+TGG - chr1_2:51406600-51406619 None:intergenic 55.0%
GGTGATCGATGCAGTTGCAG+TGG - chr1_2:51406603-51406622 None:intergenic 55.0%
TGGCTAAGGTGGGAAGAGTG+AGG + chr1_2:51407344-51407363 Msa0075820:CDS 55.0%
AAGCCCAGCAGCTATGGCAT+TGG + chr1_2:51407465-51407484 Msa0075820:CDS 55.0%
CCACCAATGCCATAGCTGCT+GGG - chr1_2:51407471-51407490 None:intergenic 55.0%
TCCACCAATGCCATAGCTGC+TGG - chr1_2:51407472-51407491 None:intergenic 55.0%
CTACGCCTCGAGTCTTGAAG+AGG + chr1_2:51407600-51407619 Msa0075820:CDS 55.0%
! CCCAGCAGCTATGGCATTGG+TGG + chr1_2:51407468-51407487 Msa0075820:CDS 60.0%
GAAGGAACCGGGCTTCCCTT+TGG + chr1_2:51407508-51407527 Msa0075820:CDS 60.0%
GCTGAGTCCAAAGGGAAGCC+CGG - chr1_2:51407518-51407537 None:intergenic 60.0%
! CCCAGCAGCTATGGCATTGG+TGG + chr1_2:51407468-51407487 Msa0075820:CDS 60.0%
GAAGGAACCGGGCTTCCCTT+TGG + chr1_2:51407508-51407527 Msa0075820:CDS 60.0%
GCTGAGTCCAAAGGGAAGCC+CGG - chr1_2:51407518-51407537 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 51406225 51407910 51406225 ID=Msa0075820;Name=Msa0075820
chr1_2 mRNA 51406225 51407910 51406225 ID=Msa0075820-mRNA-1;Parent=Msa0075820;Name=Msa0075820-mRNA-1;_AED=0.00;_eAED=0.00;_QI=356|1|1|1|1|1|2|262|137
chr1_2 exon 51406225 51406677 51406225 ID=Msa0075820-mRNA-1:exon:15822;Parent=Msa0075820-mRNA-1
chr1_2 exon 51407332 51407910 51407332 ID=Msa0075820-mRNA-1:exon:15823;Parent=Msa0075820-mRNA-1
chr1_2 five_prime_UTR 51406225 51406580 51406225 ID=Msa0075820-mRNA-1:five_prime_utr;Parent=Msa0075820-mRNA-1
chr1_2 CDS 51406581 51406677 51406581 ID=Msa0075820-mRNA-1:cds;Parent=Msa0075820-mRNA-1
chr1_2 CDS 51407332 51407648 51407332 ID=Msa0075820-mRNA-1:cds;Parent=Msa0075820-mRNA-1
chr1_2 three_prime_UTR 51407649 51407910 51407649 ID=Msa0075820-mRNA-1:three_prime_utr;Parent=Msa0075820-mRNA-1
Gene Sequence

>Msa0075820

ATGGCAACCATCTCAGCCACCACTGCAACTGCATCGATCACCCGTGCATGTCTTGCACAAAAGAGACCTCTTGCAGTTTCATCCTCTCCTGTTCTTGGATTGCCAACAATGGCTAAGGTGGGAAGAGTGAGGTGTTCAATGGAGGGAAAGCCTTCTTCTGTGAGTGAAAGCAACTCAAACATTGGAATGGGATCATCTTTGTTTGCAGCTGCATGTGCTGCAGCTATGTCAAGCCCAGCAGCTATGGCATTGGTGGATGAAAGAATGAGCACTGAAGGAACCGGGCTTCCCTTTGGACTCAGCAACAACCTTCTTGGTTGGATCCTTTTTGGTGTGTTCGGTCTTATCTGGGCTCTCTACTTTATCTACGCCTCGAGTCTTGAAGAGGATGAAGAGTCTGGATTATCCCTTTAA

Protein sequence

>Msa0075820

MATISATTATASITRACLAQKRPLAVSSSPVLGLPTMAKVGRVRCSMEGKPSSVSESNSNIGMGSSLFAAACAAAMSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASSLEEDEESGLSL*