AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0415760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0415760 MtrunA17_Chr3g0110001 96.143 363 14 0 1 363 1 363 0.0 724
Msa0415760 MtrunA17_Chr6g0464971 53.782 357 161 2 7 363 9 361 7.38e-140 401
Msa0415760 MtrunA17_Chr6g0465111 53.444 363 165 2 1 363 1 359 7.44e-140 401
Msa0415760 MtrunA17_Chr6g0465121 51.791 363 166 3 1 363 14 367 8.39e-133 384
Msa0415760 MtrunA17_Chr6g0464961 53.221 357 163 2 7 363 31 383 4.80e-130 379
Msa0415760 MtrunA17_Chr1g0200981 49.300 357 177 2 7 363 6 358 2.62e-123 359
Msa0415760 MtrunA17_Chr6g0477771 48.907 366 180 4 1 363 1 362 1.03e-120 353
Msa0415760 MtrunA17_Chr6g0464931 61.765 102 39 0 7 108 9 110 2.68e-36 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0415760 AT4G09670.1 50.964 363 174 2 1 363 1 359 8.65e-133 384
Msa0415760 AT1G66130.1 50.815 368 172 5 1 363 1 364 2.25e-127 370
Msa0415760 AT1G34200.1 45.055 364 184 5 1 363 1 349 2.03e-108 322

Find 123 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCAAGTATTAGAGATTA+TGG 0.187812 3_2:-62171811 Msa0415760:CDS
TGAGTCTTTCTACTAATTTC+TGG 0.203414 3_2:+62171766 None:intergenic
GGCCAATGGTGTGCAGTTTA+TGG 0.258616 3_2:-62173154 Msa0415760:CDS
GCCAACAACTCAAGAATTCT+TGG 0.283873 3_2:-62172283 Msa0415760:CDS
ACTGCATTGGTGCATCCTTA+TGG 0.311051 3_2:-62172197 Msa0415760:CDS
TTGTAAACTACCTAGCTATA+AGG 0.315546 3_2:+62171690 None:intergenic
CTTTCTAATTCCGATGGTAT+TGG 0.331158 3_2:-62173075 Msa0415760:CDS
CCAGCCAGTGTAAGAATCTA+TGG 0.331530 3_2:-62173351 Msa0415760:CDS
GCTTCATTTGACTTCACATT+TGG 0.336307 3_2:-62171943 Msa0415760:CDS
TCCAAGAATTCTTGAGTTGT+TGG 0.338304 3_2:+62172282 None:intergenic
TTGCAGGGGTTCTAGATCTT+AGG 0.345264 3_2:-62171515 Msa0415760:three_prime_UTR
TTGCAAGTATTAGAGATTAT+GGG 0.349073 3_2:-62171810 Msa0415760:CDS
GATGAGGTTGTGGAGGATTC+AGG 0.351521 3_2:-62173321 Msa0415760:CDS
CTTGTAGCCCTTTGCCCATA+AGG 0.361945 3_2:+62172182 None:intergenic
GGTCTCAGCCTTCTACAAAA+TGG 0.364608 3_2:-62171789 Msa0415760:CDS
GCGAAAGATACAGTGCGTTT+TGG 0.371856 3_2:-62173504 Msa0415760:CDS
GAAGCACTAGTCTCCTTGTA+TGG 0.385920 3_2:+62171961 None:intergenic
AAAATAACCAAGTGTGTGTT+TGG 0.390831 3_2:-62171624 Msa0415760:three_prime_UTR
ACAATTATGTCCCTGGTTGC+AGG 0.393455 3_2:-62171531 Msa0415760:three_prime_UTR
CTGCATTGGTGCATCCTTAT+GGG 0.395767 3_2:-62172196 Msa0415760:CDS
CAATGGGTCTATGCATCTTA+AGG 0.404896 3_2:-62171995 Msa0415760:CDS
ATATTTGCAACTGTTTGATT+TGG 0.405206 3_2:+62172069 None:intergenic
TTGGATGCTCTTGGTGCCCT+TGG 0.407577 3_2:-62172234 Msa0415760:CDS
GTCTTTGAGTGCTCAACAAC+GGG 0.419878 3_2:+62171384 Msa0415750:CDS
CTACCTAGCTATAAGGAAAC+AGG 0.424774 3_2:+62171697 None:intergenic
TTGGCAACATGAACTTCCTC+TGG 0.425477 3_2:+62171880 None:intergenic
AATCACATCTTCTTTGCAAT+GGG 0.432768 3_2:-62172097 Msa0415760:CDS
TTGGCATTGTTGATGTGCTA+TGG 0.440696 3_2:+62172301 None:intergenic
GCCGCGTTTCGTGTGACGTC+GGG 0.440927 3_2:+62172135 None:intergenic
ACCTCACGTGCAGACTCGTT+GGG 0.443029 3_2:+62173274 None:intergenic
AATTTGTTGATCTTCACATT+GGG 0.460791 3_2:-62171915 Msa0415760:CDS
GCATGTGCTGGTGGAGAAGC+CGG 0.461905 3_2:-62173223 Msa0415760:CDS
CAATCACATCTTCTTTGCAA+TGG 0.469069 3_2:-62172098 Msa0415760:CDS
ATCTAGAACCCCTGCAACCA+GGG 0.471463 3_2:+62171521 None:intergenic
ATTTCTTTCTCACACGTCCA+TGG 0.472573 3_2:-62172037 Msa0415760:CDS
TGATGATACAAGAGTTTGCT+AGG 0.472779 3_2:-62171837 Msa0415760:CDS
CAACGAGTCTGCACGTGAGG+TGG 0.479606 3_2:-62173272 Msa0415760:CDS
TGATATGGAGCGGCTTCCTA+TGG 0.484794 3_2:+62173407 None:intergenic
TTGCAACTGTTTGATTTGGT+TGG 0.486478 3_2:+62172073 None:intergenic
GTATCATCAAAGCTTCTTGA+GGG 0.492116 3_2:+62171851 None:intergenic
CTTGATCTTTCTAATTCCGA+TGG 0.493134 3_2:-62173081 Msa0415760:CDS
TGTTCCATGTTCAAAGTCCT+AGG 0.493353 3_2:+62173108 None:intergenic
TATTAGAATGATGATACAAA+CGG 0.497108 3_2:-62171418 Msa0415760:three_prime_UTR
CAATTATGTCCCTGGTTGCA+GGG 0.497640 3_2:-62171530 Msa0415760:three_prime_UTR
ATGGCGGAGATGATGGCGTT+GGG 0.501964 3_2:+62173426 None:intergenic
GGAAGCGCGGTGACGGTGGT+TGG 0.503525 3_2:+62172156 None:intergenic
AATTAGTAGAAAGACTCAAT+TGG 0.503887 3_2:-62171761 Msa0415760:CDS
GCTTCCTATGGCGGAGATGA+TGG 0.507003 3_2:+62173419 None:intergenic
CACCTCACGTGCAGACTCGT+TGG 0.508185 3_2:+62173273 None:intergenic
TTGTTGATCTTCACATTGGG+TGG 0.508424 3_2:-62171912 Msa0415760:CDS
TTATCTATAAGTGGTTCCAA+TGG 0.509254 3_2:-62172012 Msa0415760:CDS
GACGTCGGGAAGCGCGGTGA+CGG 0.509701 3_2:+62172149 None:intergenic
TCCGCCACATCAAGAGCTGC+CGG 0.512954 3_2:+62173204 None:intergenic
AGCTTCTTGAGGGAGCTTGT+TGG 0.517538 3_2:+62171861 None:intergenic
TGGCGATGGTGGCACAGCCT+AGG 0.518030 3_2:+62173478 None:intergenic
GGTCCACTTACAAATTGAAC+GGG 0.518152 3_2:+62173051 None:intergenic
GGCCGCGTTTCGTGTGACGT+CGG 0.518232 3_2:+62172134 None:intergenic
CTTAAGATGCATAGACCCAT+TGG 0.520577 3_2:+62171996 None:intergenic
CCATAGATTCTTACACTGGC+TGG 0.521540 3_2:+62173351 None:intergenic
GTATGTGGTTGCATCACCCT+AGG 0.522961 3_2:-62173125 Msa0415760:CDS
AAGCCAGAGTTGGATGCTCT+TGG 0.523659 3_2:-62172243 Msa0415760:CDS
GCACCAAGAGCATCCAACTC+TGG 0.523813 3_2:+62172240 None:intergenic
ACAATATATAGATATGTATC+CGG 0.524200 3_2:-62171659 Msa0415760:three_prime_UTR
ATCCATAAACTGCACACCAT+TGG 0.527926 3_2:+62173152 None:intergenic
AGTTTATGGATGGTTGTATG+TGG 0.530031 3_2:-62173140 Msa0415760:CDS
TGGTGCATCCTTATGGGCAA+AGG 0.534190 3_2:-62172190 Msa0415760:CDS
GTGCCCTTGGTGACTTAGCA+TGG 0.534689 3_2:-62172221 Msa0415760:CDS
TTTGGATCCAAACACACACT+TGG 0.535582 3_2:+62171617 None:intergenic
AAACCTGTTTCCTTATAGCT+AGG 0.537230 3_2:-62171700 Msa0415760:exon
TATGGCGGAGATGATGGCGT+TGG 0.538344 3_2:+62173425 None:intergenic
CATTAGAGTAAAGCCAGAGT+TGG 0.540850 3_2:-62172253 Msa0415760:CDS
TATCTATAAGTGGTTCCAAT+GGG 0.541220 3_2:-62172011 Msa0415760:CDS
GCCGGCAGCTCTTGATGTGG+CGG 0.542894 3_2:-62173205 Msa0415760:CDS
GTCGGGAAGCGCGGTGACGG+TGG 0.543015 3_2:+62172152 None:intergenic
AACGAGTCTGCACGTGAGGT+GGG 0.545992 3_2:-62173271 Msa0415760:CDS
GGTGCATCCTTATGGGCAAA+GGG 0.546980 3_2:-62172189 Msa0415760:CDS
ATAGATAACAATTATGTCCC+TGG 0.547312 3_2:-62171538 Msa0415760:three_prime_UTR
GATCTAGAACCCCTGCAACC+AGG 0.548868 3_2:+62171520 None:intergenic
TCCCAACGAGTCTGCACGTG+AGG 0.549930 3_2:-62173275 Msa0415760:CDS
GACGTCACACGAAACGCGGC+CGG 0.553374 3_2:-62172132 Msa0415760:CDS
TGTATCATCAAAGCTTCTTG+AGG 0.553516 3_2:+62171850 None:intergenic
TCCATGGACTTATCTATAAG+TGG 0.554506 3_2:-62172021 Msa0415760:CDS
AAATTTGTTGATCTTCACAT+TGG 0.555127 3_2:-62171916 Msa0415760:CDS
ACGTGCAGACTCGTTGGGAG+AGG 0.559746 3_2:+62173279 None:intergenic
GACTTAGCATGGTACTGCAT+TGG 0.559827 3_2:-62172210 Msa0415760:CDS
ATTAAGTCGTGCTATACCTC+CGG 0.560720 3_2:+62171464 None:intergenic
GGGAGTGAGAGTAATGGCTC+TGG 0.562162 3_2:+62173446 None:intergenic
AAGCACTAGTCTCCTTGTAT+GGG 0.562955 3_2:+62171962 None:intergenic
TGGTAGCTATGATGAGGTTG+TGG 0.572449 3_2:-62173331 Msa0415760:CDS
AATGGTGTGCAGTTTATGGA+TGG 0.573112 3_2:-62173150 Msa0415760:CDS
TCTAGATCTTAGGTGTAGCA+TGG 0.577597 3_2:-62171505 Msa0415760:three_prime_UTR
TATAGCACGACTTAATGTAC+TGG 0.577856 3_2:-62171457 Msa0415760:three_prime_UTR
TCACCCTAGGACTTTGAACA+TGG 0.579802 3_2:-62173112 Msa0415760:CDS
AATTATGTCCCTGGTTGCAG+GGG 0.582368 3_2:-62171529 Msa0415760:three_prime_UTR
GAGTAAGAAGAAGCATGTGC+TGG 0.587416 3_2:-62173235 Msa0415760:CDS
TCGTGTGACGTCGGGAAGCG+CGG 0.588189 3_2:+62172143 None:intergenic
GTACTCAATATATATTTCTG+TGG 0.588609 3_2:+62171570 None:intergenic
GGGTCCACTTACAAATTGAA+CGG 0.596830 3_2:+62173050 None:intergenic
AACGCCATCATCTCCGCCAT+AGG 0.597780 3_2:-62173423 Msa0415760:CDS
GGACTTCATAATCCCATACA+AGG 0.597873 3_2:-62171974 Msa0415760:CDS
TAAGAAGAAGCATGTGCTGG+TGG 0.600324 3_2:-62173232 Msa0415760:CDS
TCCCGACGTCACACGAAACG+CGG 0.601248 3_2:-62172136 Msa0415760:CDS
TTAGAAGCTTGTGAGGCCAA+TGG 0.602079 3_2:-62173168 Msa0415760:CDS
AGGAAGCCGCTCCATATCAA+AGG 0.605041 3_2:-62173403 Msa0415760:CDS
TGTCTTTGAGTGCTCAACAA+CGG 0.608693 3_2:+62171383 Msa0415750:CDS
TTTGATCTTAGAAGCTTGTG+AGG 0.608724 3_2:-62173175 Msa0415760:CDS
GAAGCCGGCAGCTCTTGATG+TGG 0.611028 3_2:-62173208 Msa0415760:CDS
GCTACCATAGATTCTTACAC+TGG 0.617062 3_2:+62173347 None:intergenic
GTTCCATGTTCAAAGTCCTA+GGG 0.618905 3_2:+62173109 None:intergenic
TTGATGCCTTTGATATGGAG+CGG 0.624795 3_2:+62173397 None:intergenic
ACCACTTATAGATAAGTCCA+TGG 0.629957 3_2:+62172020 None:intergenic
CACATGCTTCTTCTTACTCG+CGG 0.630145 3_2:+62173239 None:intergenic
TGTGATTGATAATATGACTC+CGG 0.634032 3_2:+62172113 None:intergenic
TATGGAGCGGCTTCCTATGG+CGG 0.636562 3_2:+62173410 None:intergenic
AATCTATGGTAGCTATGATG+AGG 0.644571 3_2:-62173337 Msa0415760:CDS
TTGAACGGGTCCAATACCAT+CGG 0.652449 3_2:+62173065 None:intergenic
GAGTCTGCACGTGAGGTGGG+CGG 0.653603 3_2:-62173268 Msa0415760:CDS
TAGCTATGATGAGGTTGTGG+AGG 0.660081 3_2:-62173328 Msa0415760:CDS
GGTTGTGGAGGATTCAGGTG+TGG 0.667223 3_2:-62173316 Msa0415760:CDS
AGTACCATGCTAAGTCACCA+AGG 0.689002 3_2:+62172217 None:intergenic
GTACCATGCTAAGTCACCAA+GGG 0.692891 3_2:+62172218 None:intergenic
GGCGTTGGGAGTGAGAGTAA+TGG 0.702980 3_2:+62173440 None:intergenic
TGGGTGGAATGTGAGACCAG+AGG 0.750850 3_2:-62171896 Msa0415760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAGATATAATGAAATA+GGG + chr3_2:62171917-62171936 None:intergenic 10.0%
!! TATATAAGATATAATGAAAT+AGG + chr3_2:62171918-62171937 None:intergenic 10.0%
!!! TGAACTAAAAAAAAAATTTT+AGG - chr3_2:62172384-62172403 Msa0415760:intron 10.0%
!!! AAAAAAAATTTTAGGAAATT+TGG - chr3_2:62172392-62172411 Msa0415760:intron 10.0%
!!! TTATTTTATCAAATTTTATC+CGG + chr3_2:62173306-62173325 None:intergenic 10.0%
!! ATATAAGATATAATGAAATA+GGG + chr3_2:62171917-62171936 None:intergenic 10.0%
!! TATATAAGATATAATGAAAT+AGG + chr3_2:62171918-62171937 None:intergenic 10.0%
!!! TGAACTAAAAAAAAAATTTT+AGG - chr3_2:62172384-62172403 Msa0415760:intron 10.0%
!!! AAAAAAAATTTTAGGAAATT+TGG - chr3_2:62172392-62172411 Msa0415760:intron 10.0%
!!! TTATTTTATCAAATTTTATC+CGG + chr3_2:62173306-62173325 None:intergenic 10.0%
!! TATAAGATATAATGAAATAG+GGG + chr3_2:62171916-62171935 None:intergenic 15.0%
!!! AAACTCTAAATTTGTTTATA+AGG - chr3_2:62171951-62171970 Msa0415760:CDS 15.0%
!! AGAAAAAAAAAAAAACAGTT+TGG - chr3_2:62172256-62172275 Msa0415760:CDS 15.0%
!! TATAAGATATAATGAAATAG+GGG + chr3_2:62171916-62171935 None:intergenic 15.0%
!!! AAACTCTAAATTTGTTTATA+AGG - chr3_2:62171951-62171970 Msa0415760:CDS 15.0%
!! AGAAAAAAAAAAAAACAGTT+TGG - chr3_2:62172256-62172275 Msa0415760:CDS 15.0%
!! TACAAGTATTTAGGTAAATT+TGG - chr3_2:62171998-62172017 Msa0415760:CDS 20.0%
!!! ATTTAGGTAAATTTGGAATA+TGG - chr3_2:62172005-62172024 Msa0415760:CDS 20.0%
!!! CAATGTTTAAATTTTGACAA+AGG - chr3_2:62172113-62172132 Msa0415760:CDS 20.0%
!! CATACTAACAATTTAAATCT+TGG - chr3_2:62172161-62172180 Msa0415760:CDS 20.0%
!! AAAAAAAAAAAACAGTTTGG+TGG - chr3_2:62172259-62172278 Msa0415760:CDS 20.0%
!! GAAATTTGGATATAAAATTG+AGG - chr3_2:62172406-62172425 Msa0415760:intron 20.0%
!! ACAATATATAGATATGTATC+CGG - chr3_2:62173284-62173303 Msa0415760:CDS 20.0%
!! TATTAGAATGATGATACAAA+CGG - chr3_2:62173525-62173544 Msa0415760:exon 20.0%
!! TACAAGTATTTAGGTAAATT+TGG - chr3_2:62171998-62172017 Msa0415760:CDS 20.0%
!!! ATTTAGGTAAATTTGGAATA+TGG - chr3_2:62172005-62172024 Msa0415760:CDS 20.0%
!!! CAATGTTTAAATTTTGACAA+AGG - chr3_2:62172113-62172132 Msa0415760:CDS 20.0%
!! CATACTAACAATTTAAATCT+TGG - chr3_2:62172161-62172180 Msa0415760:CDS 20.0%
!! AAAAAAAAAAAACAGTTTGG+TGG - chr3_2:62172259-62172278 Msa0415760:CDS 20.0%
!! GAAATTTGGATATAAAATTG+AGG - chr3_2:62172406-62172425 Msa0415760:intron 20.0%
!! ACAATATATAGATATGTATC+CGG - chr3_2:62173284-62173303 Msa0415760:CDS 20.0%
!! TATTAGAATGATGATACAAA+CGG - chr3_2:62173525-62173544 Msa0415760:exon 20.0%
!!! AAATTTTGATGCCTTTGATA+TGG + chr3_2:62171554-62171573 None:intergenic 25.0%
! CTAACAATTTAAATCTTGGT+AGG - chr3_2:62172165-62172184 Msa0415760:CDS 25.0%
! TAATATTATTCGAGACATGA+CGG + chr3_2:62172213-62172232 None:intergenic 25.0%
! ATATTTGCAACTGTTTGATT+TGG + chr3_2:62172877-62172896 None:intergenic 25.0%
!!! AAATTTGTTGATCTTCACAT+TGG - chr3_2:62173027-62173046 Msa0415760:intron 25.0%
!!! AATTTGTTGATCTTCACATT+GGG - chr3_2:62173028-62173047 Msa0415760:intron 25.0%
! TTGCAAGTATTAGAGATTAT+GGG - chr3_2:62173133-62173152 Msa0415760:CDS 25.0%
! AATTAGTAGAAAGACTCAAT+TGG - chr3_2:62173182-62173201 Msa0415760:CDS 25.0%
!! TGATTTTGTCAAACTAACTT+TGG + chr3_2:62173347-62173366 None:intergenic 25.0%
!! GTACTCAATATATATTTCTG+TGG + chr3_2:62173376-62173395 None:intergenic 25.0%
!!! AAATTTTGATGCCTTTGATA+TGG + chr3_2:62171554-62171573 None:intergenic 25.0%
! CTAACAATTTAAATCTTGGT+AGG - chr3_2:62172165-62172184 Msa0415760:CDS 25.0%
! TAATATTATTCGAGACATGA+CGG + chr3_2:62172213-62172232 None:intergenic 25.0%
! ATATTTGCAACTGTTTGATT+TGG + chr3_2:62172877-62172896 None:intergenic 25.0%
!!! AAATTTGTTGATCTTCACAT+TGG - chr3_2:62173027-62173046 Msa0415760:intron 25.0%
!!! AATTTGTTGATCTTCACATT+GGG - chr3_2:62173028-62173047 Msa0415760:intron 25.0%
! TTGCAAGTATTAGAGATTAT+GGG - chr3_2:62173133-62173152 Msa0415760:CDS 25.0%
! AATTAGTAGAAAGACTCAAT+TGG - chr3_2:62173182-62173201 Msa0415760:CDS 25.0%
!! TGATTTTGTCAAACTAACTT+TGG + chr3_2:62173347-62173366 None:intergenic 25.0%
!! GTACTCAATATATATTTCTG+TGG + chr3_2:62173376-62173395 None:intergenic 25.0%
!! ATCTTTCGCAGTCATTTTAT+GGG + chr3_2:62171428-62171447 None:intergenic 30.0%
!! TATCTTTCGCAGTCATTTTA+TGG + chr3_2:62171429-62171448 None:intergenic 30.0%
CCTAAATACTTGTAGTATAC+TGG + chr3_2:62171992-62172011 None:intergenic 30.0%
CCAGTATACTACAAGTATTT+AGG - chr3_2:62171989-62172008 Msa0415760:CDS 30.0%
! GGTAAATTTGGAATATGGAT+CGG - chr3_2:62172010-62172029 Msa0415760:CDS 30.0%
! GTAAATTTGGAATATGGATC+GGG - chr3_2:62172011-62172030 Msa0415760:CDS 30.0%
TACATCAAGTGAAAGAGATT+AGG - chr3_2:62172231-62172250 Msa0415760:CDS 30.0%
ACATCAAGTGAAAGAGATTA+GGG - chr3_2:62172232-62172251 Msa0415760:CDS 30.0%
! AAAAAAACAGTTTGGTGGTT+TGG - chr3_2:62172264-62172283 Msa0415760:CDS 30.0%
! AAAAAACAGTTTGGTGGTTT+GGG - chr3_2:62172265-62172284 Msa0415760:CDS 30.0%
ATAGCTAACAACTATCATTG+AGG - chr3_2:62172450-62172469 Msa0415760:intron 30.0%
! TGTGATTGATAATATGACTC+CGG + chr3_2:62172833-62172852 None:intergenic 30.0%
AATCACATCTTCTTTGCAAT+GGG - chr3_2:62172846-62172865 Msa0415760:intron 30.0%
TTATCTATAAGTGGTTCCAA+TGG - chr3_2:62172931-62172950 Msa0415760:intron 30.0%
TATCTATAAGTGGTTCCAAT+GGG - chr3_2:62172932-62172951 Msa0415760:intron 30.0%
GTTGCAAGTATTAGAGATTA+TGG - chr3_2:62173132-62173151 Msa0415760:CDS 30.0%
TGAGTCTTTCTACTAATTTC+TGG + chr3_2:62173180-62173199 None:intergenic 30.0%
TTGTAAACTACCTAGCTATA+AGG + chr3_2:62173256-62173275 None:intergenic 30.0%
AAAATAACCAAGTGTGTGTT+TGG - chr3_2:62173319-62173338 Msa0415760:CDS 30.0%
ATAGATAACAATTATGTCCC+TGG - chr3_2:62173405-62173424 Msa0415760:CDS 30.0%
!! ATCTTTCGCAGTCATTTTAT+GGG + chr3_2:62171428-62171447 None:intergenic 30.0%
!! TATCTTTCGCAGTCATTTTA+TGG + chr3_2:62171429-62171448 None:intergenic 30.0%
CCTAAATACTTGTAGTATAC+TGG + chr3_2:62171992-62172011 None:intergenic 30.0%
CCAGTATACTACAAGTATTT+AGG - chr3_2:62171989-62172008 Msa0415760:CDS 30.0%
! GGTAAATTTGGAATATGGAT+CGG - chr3_2:62172010-62172029 Msa0415760:CDS 30.0%
! GTAAATTTGGAATATGGATC+GGG - chr3_2:62172011-62172030 Msa0415760:CDS 30.0%
TACATCAAGTGAAAGAGATT+AGG - chr3_2:62172231-62172250 Msa0415760:CDS 30.0%
ACATCAAGTGAAAGAGATTA+GGG - chr3_2:62172232-62172251 Msa0415760:CDS 30.0%
! AAAAAAACAGTTTGGTGGTT+TGG - chr3_2:62172264-62172283 Msa0415760:CDS 30.0%
! AAAAAACAGTTTGGTGGTTT+GGG - chr3_2:62172265-62172284 Msa0415760:CDS 30.0%
ATAGCTAACAACTATCATTG+AGG - chr3_2:62172450-62172469 Msa0415760:intron 30.0%
! TGTGATTGATAATATGACTC+CGG + chr3_2:62172833-62172852 None:intergenic 30.0%
AATCACATCTTCTTTGCAAT+GGG - chr3_2:62172846-62172865 Msa0415760:intron 30.0%
TTATCTATAAGTGGTTCCAA+TGG - chr3_2:62172931-62172950 Msa0415760:intron 30.0%
TATCTATAAGTGGTTCCAAT+GGG - chr3_2:62172932-62172951 Msa0415760:intron 30.0%
GTTGCAAGTATTAGAGATTA+TGG - chr3_2:62173132-62173151 Msa0415760:CDS 30.0%
TGAGTCTTTCTACTAATTTC+TGG + chr3_2:62173180-62173199 None:intergenic 30.0%
TTGTAAACTACCTAGCTATA+AGG + chr3_2:62173256-62173275 None:intergenic 30.0%
AAAATAACCAAGTGTGTGTT+TGG - chr3_2:62173319-62173338 Msa0415760:CDS 30.0%
ATAGATAACAATTATGTCCC+TGG - chr3_2:62173405-62173424 Msa0415760:CDS 30.0%
AATCTATGGTAGCTATGATG+AGG - chr3_2:62171606-62171625 Msa0415760:three_prime_UTR 35.0%
TTTGATCTTAGAAGCTTGTG+AGG - chr3_2:62171768-62171787 Msa0415760:CDS 35.0%
AGTTTATGGATGGTTGTATG+TGG - chr3_2:62171803-62171822 Msa0415760:CDS 35.0%
CTTGATCTTTCTAATTCCGA+TGG - chr3_2:62171862-62171881 Msa0415760:CDS 35.0%
CTTTCTAATTCCGATGGTAT+TGG - chr3_2:62171868-62171887 Msa0415760:CDS 35.0%
CATCAAGTGAAAGAGATTAG+GGG - chr3_2:62172233-62172252 Msa0415760:CDS 35.0%
! AAAAACAGTTTGGTGGTTTG+GGG - chr3_2:62172266-62172285 Msa0415760:CDS 35.0%
! TCCAAGAATTCTTGAGTTGT+TGG + chr3_2:62172664-62172683 None:intergenic 35.0%
CAATCACATCTTCTTTGCAA+TGG - chr3_2:62172845-62172864 Msa0415760:intron 35.0%
!! TTGCAACTGTTTGATTTGGT+TGG + chr3_2:62172873-62172892 None:intergenic 35.0%
TCCATGGACTTATCTATAAG+TGG - chr3_2:62172922-62172941 Msa0415760:intron 35.0%
ACCACTTATAGATAAGTCCA+TGG + chr3_2:62172926-62172945 None:intergenic 35.0%
! GCTTCATTTGACTTCACATT+TGG - chr3_2:62173000-62173019 Msa0415760:intron 35.0%
GTATCATCAAAGCTTCTTGA+GGG + chr3_2:62173095-62173114 None:intergenic 35.0%
TGTATCATCAAAGCTTCTTG+AGG + chr3_2:62173096-62173115 None:intergenic 35.0%
! TGATGATACAAGAGTTTGCT+AGG - chr3_2:62173106-62173125 Msa0415760:CDS 35.0%
!!! ATTTCTGGCCATTTTGTAGA+AGG + chr3_2:62173165-62173184 None:intergenic 35.0%
!! GTGAAAAAGTCTTTAGAGCT+TGG - chr3_2:62173216-62173235 Msa0415760:CDS 35.0%
AAACCTGTTTCCTTATAGCT+AGG - chr3_2:62173243-62173262 Msa0415760:CDS 35.0%
! GCATGGCCTTTTCTTTTTTT+CGG - chr3_2:62173455-62173474 Msa0415760:CDS 35.0%
TATAGCACGACTTAATGTAC+TGG - chr3_2:62173486-62173505 Msa0415760:CDS 35.0%
AATCTATGGTAGCTATGATG+AGG - chr3_2:62171606-62171625 Msa0415760:three_prime_UTR 35.0%
TTTGATCTTAGAAGCTTGTG+AGG - chr3_2:62171768-62171787 Msa0415760:CDS 35.0%
AGTTTATGGATGGTTGTATG+TGG - chr3_2:62171803-62171822 Msa0415760:CDS 35.0%
CTTGATCTTTCTAATTCCGA+TGG - chr3_2:62171862-62171881 Msa0415760:CDS 35.0%
CTTTCTAATTCCGATGGTAT+TGG - chr3_2:62171868-62171887 Msa0415760:CDS 35.0%
CATCAAGTGAAAGAGATTAG+GGG - chr3_2:62172233-62172252 Msa0415760:CDS 35.0%
! AAAAACAGTTTGGTGGTTTG+GGG - chr3_2:62172266-62172285 Msa0415760:CDS 35.0%
! TCCAAGAATTCTTGAGTTGT+TGG + chr3_2:62172664-62172683 None:intergenic 35.0%
CAATCACATCTTCTTTGCAA+TGG - chr3_2:62172845-62172864 Msa0415760:intron 35.0%
!! TTGCAACTGTTTGATTTGGT+TGG + chr3_2:62172873-62172892 None:intergenic 35.0%
TCCATGGACTTATCTATAAG+TGG - chr3_2:62172922-62172941 Msa0415760:intron 35.0%
ACCACTTATAGATAAGTCCA+TGG + chr3_2:62172926-62172945 None:intergenic 35.0%
! GCTTCATTTGACTTCACATT+TGG - chr3_2:62173000-62173019 Msa0415760:intron 35.0%
GTATCATCAAAGCTTCTTGA+GGG + chr3_2:62173095-62173114 None:intergenic 35.0%
TGTATCATCAAAGCTTCTTG+AGG + chr3_2:62173096-62173115 None:intergenic 35.0%
! TGATGATACAAGAGTTTGCT+AGG - chr3_2:62173106-62173125 Msa0415760:CDS 35.0%
!!! ATTTCTGGCCATTTTGTAGA+AGG + chr3_2:62173165-62173184 None:intergenic 35.0%
!! GTGAAAAAGTCTTTAGAGCT+TGG - chr3_2:62173216-62173235 Msa0415760:CDS 35.0%
AAACCTGTTTCCTTATAGCT+AGG - chr3_2:62173243-62173262 Msa0415760:CDS 35.0%
! GCATGGCCTTTTCTTTTTTT+CGG - chr3_2:62173455-62173474 Msa0415760:CDS 35.0%
TATAGCACGACTTAATGTAC+TGG - chr3_2:62173486-62173505 Msa0415760:CDS 35.0%
TTGATGCCTTTGATATGGAG+CGG + chr3_2:62171549-62171568 None:intergenic 40.0%
GCTACCATAGATTCTTACAC+TGG + chr3_2:62171599-62171618 None:intergenic 40.0%
ATCCATAAACTGCACACCAT+TGG + chr3_2:62171794-62171813 None:intergenic 40.0%
AATGGTGTGCAGTTTATGGA+TGG - chr3_2:62171793-62171812 Msa0415760:CDS 40.0%
GTTCCATGTTCAAAGTCCTA+GGG + chr3_2:62171837-62171856 None:intergenic 40.0%
TGTTCCATGTTCAAAGTCCT+AGG + chr3_2:62171838-62171857 None:intergenic 40.0%
GGTCCACTTACAAATTGAAC+GGG + chr3_2:62171895-62171914 None:intergenic 40.0%
GGGTCCACTTACAAATTGAA+CGG + chr3_2:62171896-62171915 None:intergenic 40.0%
! AAAACAGTTTGGTGGTTTGG+GGG - chr3_2:62172267-62172286 Msa0415760:CDS 40.0%
TGGGGGAATAACATAAGAGT+TGG - chr3_2:62172284-62172303 Msa0415760:CDS 40.0%
TTGGCATTGTTGATGTGCTA+TGG + chr3_2:62172645-62172664 None:intergenic 40.0%
GCCAACAACTCAAGAATTCT+TGG - chr3_2:62172660-62172679 Msa0415760:intron 40.0%
CATTAGAGTAAAGCCAGAGT+TGG - chr3_2:62172690-62172709 Msa0415760:intron 40.0%
ATTTCTTTCTCACACGTCCA+TGG - chr3_2:62172906-62172925 Msa0415760:intron 40.0%
CTTAAGATGCATAGACCCAT+TGG + chr3_2:62172950-62172969 None:intergenic 40.0%
CAATGGGTCTATGCATCTTA+AGG - chr3_2:62172948-62172967 Msa0415760:intron 40.0%
GGACTTCATAATCCCATACA+AGG - chr3_2:62172969-62172988 Msa0415760:intron 40.0%
! AAGCACTAGTCTCCTTGTAT+GGG + chr3_2:62172984-62173003 None:intergenic 40.0%
TTGTTGATCTTCACATTGGG+TGG - chr3_2:62173031-62173050 Msa0415760:intron 40.0%
CTACCTAGCTATAAGGAAAC+AGG + chr3_2:62173249-62173268 None:intergenic 40.0%
TTTGGATCCAAACACACACT+TGG + chr3_2:62173329-62173348 None:intergenic 40.0%
TCTAGATCTTAGGTGTAGCA+TGG - chr3_2:62173438-62173457 Msa0415760:CDS 40.0%
!!! GCCTTTTCTTTTTTTCGGAC+CGG - chr3_2:62173460-62173479 Msa0415760:CDS 40.0%
TCCGGTCCGAAAAAAAGAAA+AGG + chr3_2:62173464-62173483 None:intergenic 40.0%
!!! TTTTCTTTTTTTCGGACCGG+AGG - chr3_2:62173463-62173482 Msa0415760:CDS 40.0%
ATTAAGTCGTGCTATACCTC+CGG + chr3_2:62173482-62173501 None:intergenic 40.0%
TTGATGCCTTTGATATGGAG+CGG + chr3_2:62171549-62171568 None:intergenic 40.0%
GCTACCATAGATTCTTACAC+TGG + chr3_2:62171599-62171618 None:intergenic 40.0%
ATCCATAAACTGCACACCAT+TGG + chr3_2:62171794-62171813 None:intergenic 40.0%
AATGGTGTGCAGTTTATGGA+TGG - chr3_2:62171793-62171812 Msa0415760:CDS 40.0%
GTTCCATGTTCAAAGTCCTA+GGG + chr3_2:62171837-62171856 None:intergenic 40.0%
TGTTCCATGTTCAAAGTCCT+AGG + chr3_2:62171838-62171857 None:intergenic 40.0%
GGTCCACTTACAAATTGAAC+GGG + chr3_2:62171895-62171914 None:intergenic 40.0%
GGGTCCACTTACAAATTGAA+CGG + chr3_2:62171896-62171915 None:intergenic 40.0%
! AAAACAGTTTGGTGGTTTGG+GGG - chr3_2:62172267-62172286 Msa0415760:CDS 40.0%
TGGGGGAATAACATAAGAGT+TGG - chr3_2:62172284-62172303 Msa0415760:CDS 40.0%
TTGGCATTGTTGATGTGCTA+TGG + chr3_2:62172645-62172664 None:intergenic 40.0%
GCCAACAACTCAAGAATTCT+TGG - chr3_2:62172660-62172679 Msa0415760:intron 40.0%
CATTAGAGTAAAGCCAGAGT+TGG - chr3_2:62172690-62172709 Msa0415760:intron 40.0%
ATTTCTTTCTCACACGTCCA+TGG - chr3_2:62172906-62172925 Msa0415760:intron 40.0%
CTTAAGATGCATAGACCCAT+TGG + chr3_2:62172950-62172969 None:intergenic 40.0%
CAATGGGTCTATGCATCTTA+AGG - chr3_2:62172948-62172967 Msa0415760:intron 40.0%
GGACTTCATAATCCCATACA+AGG - chr3_2:62172969-62172988 Msa0415760:intron 40.0%
! AAGCACTAGTCTCCTTGTAT+GGG + chr3_2:62172984-62173003 None:intergenic 40.0%
TTGTTGATCTTCACATTGGG+TGG - chr3_2:62173031-62173050 Msa0415760:intron 40.0%
CTACCTAGCTATAAGGAAAC+AGG + chr3_2:62173249-62173268 None:intergenic 40.0%
TTTGGATCCAAACACACACT+TGG + chr3_2:62173329-62173348 None:intergenic 40.0%
TCTAGATCTTAGGTGTAGCA+TGG - chr3_2:62173438-62173457 Msa0415760:CDS 40.0%
!!! GCCTTTTCTTTTTTTCGGAC+CGG - chr3_2:62173460-62173479 Msa0415760:CDS 40.0%
TCCGGTCCGAAAAAAAGAAA+AGG + chr3_2:62173464-62173483 None:intergenic 40.0%
!!! TTTTCTTTTTTTCGGACCGG+AGG - chr3_2:62173463-62173482 Msa0415760:CDS 40.0%
ATTAAGTCGTGCTATACCTC+CGG + chr3_2:62173482-62173501 None:intergenic 40.0%
! GCGAAAGATACAGTGCGTTT+TGG - chr3_2:62171439-62171458 Msa0415760:three_prime_UTR 45.0%
!!! AATGGCTCTGGCTAGTTTTC+TGG + chr3_2:62171488-62171507 None:intergenic 45.0%
! GGCTGGTAAACTGTTTTCGA+CGG + chr3_2:62171578-62171597 None:intergenic 45.0%
CCATAGATTCTTACACTGGC+TGG + chr3_2:62171595-62171614 None:intergenic 45.0%
CCAGCCAGTGTAAGAATCTA+TGG - chr3_2:62171592-62171611 Msa0415760:three_prime_UTR 45.0%
TGGTAGCTATGATGAGGTTG+TGG - chr3_2:62171612-62171631 Msa0415760:three_prime_UTR 45.0%
TAGCTATGATGAGGTTGTGG+AGG - chr3_2:62171615-62171634 Msa0415760:three_prime_UTR 45.0%
CACATGCTTCTTCTTACTCG+CGG + chr3_2:62171707-62171726 None:intergenic 45.0%
! GAGTAAGAAGAAGCATGTGC+TGG - chr3_2:62171708-62171727 Msa0415760:CDS 45.0%
! TAAGAAGAAGCATGTGCTGG+TGG - chr3_2:62171711-62171730 Msa0415760:CDS 45.0%
TTAGAAGCTTGTGAGGCCAA+TGG - chr3_2:62171775-62171794 Msa0415760:CDS 45.0%
TCACCCTAGGACTTTGAACA+TGG - chr3_2:62171831-62171850 Msa0415760:CDS 45.0%
TTGAACGGGTCCAATACCAT+CGG + chr3_2:62171881-62171900 None:intergenic 45.0%
GGACCCGTTCAATTTGTAAG+TGG - chr3_2:62171889-62171908 Msa0415760:CDS 45.0%
AAAACTAGACCCCAACAACG+TGG - chr3_2:62172045-62172064 Msa0415760:CDS 45.0%
CGATGCTGACAAGGGATTAA+AGG - chr3_2:62172072-62172091 Msa0415760:CDS 45.0%
GTACCATGCTAAGTCACCAA+GGG + chr3_2:62172728-62172747 None:intergenic 45.0%
AGTACCATGCTAAGTCACCA+AGG + chr3_2:62172729-62172748 None:intergenic 45.0%
GACTTAGCATGGTACTGCAT+TGG - chr3_2:62172733-62172752 Msa0415760:intron 45.0%
! ACTGCATTGGTGCATCCTTA+TGG - chr3_2:62172746-62172765 Msa0415760:intron 45.0%
! CTGCATTGGTGCATCCTTAT+GGG - chr3_2:62172747-62172766 Msa0415760:intron 45.0%
! GAAGCACTAGTCTCCTTGTA+TGG + chr3_2:62172985-62173004 None:intergenic 45.0%
TTGGCAACATGAACTTCCTC+TGG + chr3_2:62173066-62173085 None:intergenic 45.0%
GGTCTCAGCCTTCTACAAAA+TGG - chr3_2:62173154-62173173 Msa0415760:CDS 45.0%
ACAATTATGTCCCTGGTTGC+AGG - chr3_2:62173412-62173431 Msa0415760:CDS 45.0%
CAATTATGTCCCTGGTTGCA+GGG - chr3_2:62173413-62173432 Msa0415760:CDS 45.0%
AATTATGTCCCTGGTTGCAG+GGG - chr3_2:62173414-62173433 Msa0415760:CDS 45.0%
!! TTGCAGGGGTTCTAGATCTT+AGG - chr3_2:62173428-62173447 Msa0415760:CDS 45.0%
! GCGAAAGATACAGTGCGTTT+TGG - chr3_2:62171439-62171458 Msa0415760:three_prime_UTR 45.0%
!!! AATGGCTCTGGCTAGTTTTC+TGG + chr3_2:62171488-62171507 None:intergenic 45.0%
! GGCTGGTAAACTGTTTTCGA+CGG + chr3_2:62171578-62171597 None:intergenic 45.0%
CCATAGATTCTTACACTGGC+TGG + chr3_2:62171595-62171614 None:intergenic 45.0%
CCAGCCAGTGTAAGAATCTA+TGG - chr3_2:62171592-62171611 Msa0415760:three_prime_UTR 45.0%
TGGTAGCTATGATGAGGTTG+TGG - chr3_2:62171612-62171631 Msa0415760:three_prime_UTR 45.0%
TAGCTATGATGAGGTTGTGG+AGG - chr3_2:62171615-62171634 Msa0415760:three_prime_UTR 45.0%
CACATGCTTCTTCTTACTCG+CGG + chr3_2:62171707-62171726 None:intergenic 45.0%
! GAGTAAGAAGAAGCATGTGC+TGG - chr3_2:62171708-62171727 Msa0415760:CDS 45.0%
! TAAGAAGAAGCATGTGCTGG+TGG - chr3_2:62171711-62171730 Msa0415760:CDS 45.0%
TTAGAAGCTTGTGAGGCCAA+TGG - chr3_2:62171775-62171794 Msa0415760:CDS 45.0%
TCACCCTAGGACTTTGAACA+TGG - chr3_2:62171831-62171850 Msa0415760:CDS 45.0%
TTGAACGGGTCCAATACCAT+CGG + chr3_2:62171881-62171900 None:intergenic 45.0%
GGACCCGTTCAATTTGTAAG+TGG - chr3_2:62171889-62171908 Msa0415760:CDS 45.0%
AAAACTAGACCCCAACAACG+TGG - chr3_2:62172045-62172064 Msa0415760:CDS 45.0%
CGATGCTGACAAGGGATTAA+AGG - chr3_2:62172072-62172091 Msa0415760:CDS 45.0%
GTACCATGCTAAGTCACCAA+GGG + chr3_2:62172728-62172747 None:intergenic 45.0%
AGTACCATGCTAAGTCACCA+AGG + chr3_2:62172729-62172748 None:intergenic 45.0%
GACTTAGCATGGTACTGCAT+TGG - chr3_2:62172733-62172752 Msa0415760:intron 45.0%
! ACTGCATTGGTGCATCCTTA+TGG - chr3_2:62172746-62172765 Msa0415760:intron 45.0%
! CTGCATTGGTGCATCCTTAT+GGG - chr3_2:62172747-62172766 Msa0415760:intron 45.0%
! GAAGCACTAGTCTCCTTGTA+TGG + chr3_2:62172985-62173004 None:intergenic 45.0%
TTGGCAACATGAACTTCCTC+TGG + chr3_2:62173066-62173085 None:intergenic 45.0%
GGTCTCAGCCTTCTACAAAA+TGG - chr3_2:62173154-62173173 Msa0415760:CDS 45.0%
ACAATTATGTCCCTGGTTGC+AGG - chr3_2:62173412-62173431 Msa0415760:CDS 45.0%
CAATTATGTCCCTGGTTGCA+GGG - chr3_2:62173413-62173432 Msa0415760:CDS 45.0%
AATTATGTCCCTGGTTGCAG+GGG - chr3_2:62173414-62173433 Msa0415760:CDS 45.0%
!! TTGCAGGGGTTCTAGATCTT+AGG - chr3_2:62173428-62173447 Msa0415760:CDS 45.0%
!! TTTAAAAAAAAAATATTAGT+TGG + chr3_2:62172358-62172377 None:intergenic 5.0%
!! TTTAAAAAAAAAATATTAGT+TGG + chr3_2:62172358-62172377 None:intergenic 5.0%
!! ACAGTGCGTTTTGGCATCCT+AGG - chr3_2:62171448-62171467 Msa0415760:three_prime_UTR 50.0%
!!! TCTGGCTAGTTTTCTGGCGA+TGG + chr3_2:62171482-62171501 None:intergenic 50.0%
TGATATGGAGCGGCTTCCTA+TGG + chr3_2:62171539-62171558 None:intergenic 50.0%
AGGAAGCCGCTCCATATCAA+AGG - chr3_2:62171540-62171559 Msa0415760:three_prime_UTR 50.0%
GATGAGGTTGTGGAGGATTC+AGG - chr3_2:62171622-62171641 Msa0415760:three_prime_UTR 50.0%
GGCCAATGGTGTGCAGTTTA+TGG - chr3_2:62171789-62171808 Msa0415760:CDS 50.0%
GTATGTGGTTGCATCACCCT+AGG - chr3_2:62171818-62171837 Msa0415760:CDS 50.0%
CATCGTTTGCCACGTTGTTG+GGG + chr3_2:62172057-62172076 None:intergenic 50.0%
GCATCGTTTGCCACGTTGTT+GGG + chr3_2:62172058-62172077 None:intergenic 50.0%
AGCATCGTTTGCCACGTTGT+TGG + chr3_2:62172059-62172078 None:intergenic 50.0%
GTGGCAAACGATGCTGACAA+GGG - chr3_2:62172064-62172083 Msa0415760:CDS 50.0%
TCATTGAGGTCTAGCGCAAG+TGG - chr3_2:62172464-62172483 Msa0415760:intron 50.0%
AAGCCAGAGTTGGATGCTCT+TGG - chr3_2:62172700-62172719 Msa0415760:intron 50.0%
TGGTGCATCCTTATGGGCAA+AGG - chr3_2:62172753-62172772 Msa0415760:intron 50.0%
GGTGCATCCTTATGGGCAAA+GGG - chr3_2:62172754-62172773 Msa0415760:intron 50.0%
CTTGTAGCCCTTTGCCCATA+AGG + chr3_2:62172764-62172783 None:intergenic 50.0%
AGCTTCTTGAGGGAGCTTGT+TGG + chr3_2:62173085-62173104 None:intergenic 50.0%
! ATCTAGAACCCCTGCAACCA+GGG + chr3_2:62173425-62173444 None:intergenic 50.0%
!! ACAGTGCGTTTTGGCATCCT+AGG - chr3_2:62171448-62171467 Msa0415760:three_prime_UTR 50.0%
!!! TCTGGCTAGTTTTCTGGCGA+TGG + chr3_2:62171482-62171501 None:intergenic 50.0%
TGATATGGAGCGGCTTCCTA+TGG + chr3_2:62171539-62171558 None:intergenic 50.0%
AGGAAGCCGCTCCATATCAA+AGG - chr3_2:62171540-62171559 Msa0415760:three_prime_UTR 50.0%
GATGAGGTTGTGGAGGATTC+AGG - chr3_2:62171622-62171641 Msa0415760:three_prime_UTR 50.0%
GGCCAATGGTGTGCAGTTTA+TGG - chr3_2:62171789-62171808 Msa0415760:CDS 50.0%
GTATGTGGTTGCATCACCCT+AGG - chr3_2:62171818-62171837 Msa0415760:CDS 50.0%
CATCGTTTGCCACGTTGTTG+GGG + chr3_2:62172057-62172076 None:intergenic 50.0%
GCATCGTTTGCCACGTTGTT+GGG + chr3_2:62172058-62172077 None:intergenic 50.0%
AGCATCGTTTGCCACGTTGT+TGG + chr3_2:62172059-62172078 None:intergenic 50.0%
GTGGCAAACGATGCTGACAA+GGG - chr3_2:62172064-62172083 Msa0415760:CDS 50.0%
TCATTGAGGTCTAGCGCAAG+TGG - chr3_2:62172464-62172483 Msa0415760:intron 50.0%
AAGCCAGAGTTGGATGCTCT+TGG - chr3_2:62172700-62172719 Msa0415760:intron 50.0%
TGGTGCATCCTTATGGGCAA+AGG - chr3_2:62172753-62172772 Msa0415760:intron 50.0%
GGTGCATCCTTATGGGCAAA+GGG - chr3_2:62172754-62172773 Msa0415760:intron 50.0%
CTTGTAGCCCTTTGCCCATA+AGG + chr3_2:62172764-62172783 None:intergenic 50.0%
AGCTTCTTGAGGGAGCTTGT+TGG + chr3_2:62173085-62173104 None:intergenic 50.0%
! ATCTAGAACCCCTGCAACCA+GGG + chr3_2:62173425-62173444 None:intergenic 50.0%
!!! GGCTAGTTTTCTGGCGATGG+TGG + chr3_2:62171479-62171498 None:intergenic 55.0%
GGGAGTGAGAGTAATGGCTC+TGG + chr3_2:62171500-62171519 None:intergenic 55.0%
! GGCGTTGGGAGTGAGAGTAA+TGG + chr3_2:62171506-62171525 None:intergenic 55.0%
! ATGGCGGAGATGATGGCGTT+GGG + chr3_2:62171520-62171539 None:intergenic 55.0%
! TATGGCGGAGATGATGGCGT+TGG + chr3_2:62171521-62171540 None:intergenic 55.0%
AACGCCATCATCTCCGCCAT+AGG - chr3_2:62171520-62171539 Msa0415760:three_prime_UTR 55.0%
! GCTTCCTATGGCGGAGATGA+TGG + chr3_2:62171527-62171546 None:intergenic 55.0%
TATGGAGCGGCTTCCTATGG+CGG + chr3_2:62171536-62171555 None:intergenic 55.0%
GGTTGTGGAGGATTCAGGTG+TGG - chr3_2:62171627-62171646 Msa0415760:three_prime_UTR 55.0%
ACCTCACGTGCAGACTCGTT+GGG + chr3_2:62171672-62171691 None:intergenic 55.0%
AACGAGTCTGCACGTGAGGT+GGG - chr3_2:62171672-62171691 Msa0415760:three_prime_UTR 55.0%
CGTGGCAAACGATGCTGACA+AGG - chr3_2:62172063-62172082 Msa0415760:CDS 55.0%
!! GCACCAAGAGCATCCAACTC+TGG + chr3_2:62172706-62172725 None:intergenic 55.0%
!! TTGGATGCTCTTGGTGCCCT+TGG - chr3_2:62172709-62172728 Msa0415760:intron 55.0%
! GTGCCCTTGGTGACTTAGCA+TGG - chr3_2:62172722-62172741 Msa0415760:intron 55.0%
TGGGTGGAATGTGAGACCAG+AGG - chr3_2:62173047-62173066 Msa0415760:intron 55.0%
! GATCTAGAACCCCTGCAACC+AGG + chr3_2:62173426-62173445 None:intergenic 55.0%
!!! GGCTAGTTTTCTGGCGATGG+TGG + chr3_2:62171479-62171498 None:intergenic 55.0%
GGGAGTGAGAGTAATGGCTC+TGG + chr3_2:62171500-62171519 None:intergenic 55.0%
! GGCGTTGGGAGTGAGAGTAA+TGG + chr3_2:62171506-62171525 None:intergenic 55.0%
! ATGGCGGAGATGATGGCGTT+GGG + chr3_2:62171520-62171539 None:intergenic 55.0%
! TATGGCGGAGATGATGGCGT+TGG + chr3_2:62171521-62171540 None:intergenic 55.0%
AACGCCATCATCTCCGCCAT+AGG - chr3_2:62171520-62171539 Msa0415760:three_prime_UTR 55.0%
! GCTTCCTATGGCGGAGATGA+TGG + chr3_2:62171527-62171546 None:intergenic 55.0%
TATGGAGCGGCTTCCTATGG+CGG + chr3_2:62171536-62171555 None:intergenic 55.0%
GGTTGTGGAGGATTCAGGTG+TGG - chr3_2:62171627-62171646 Msa0415760:three_prime_UTR 55.0%
ACCTCACGTGCAGACTCGTT+GGG + chr3_2:62171672-62171691 None:intergenic 55.0%
AACGAGTCTGCACGTGAGGT+GGG - chr3_2:62171672-62171691 Msa0415760:three_prime_UTR 55.0%
CGTGGCAAACGATGCTGACA+AGG - chr3_2:62172063-62172082 Msa0415760:CDS 55.0%
!! GCACCAAGAGCATCCAACTC+TGG + chr3_2:62172706-62172725 None:intergenic 55.0%
!! TTGGATGCTCTTGGTGCCCT+TGG - chr3_2:62172709-62172728 Msa0415760:intron 55.0%
! GTGCCCTTGGTGACTTAGCA+TGG - chr3_2:62172722-62172741 Msa0415760:intron 55.0%
TGGGTGGAATGTGAGACCAG+AGG - chr3_2:62173047-62173066 Msa0415760:intron 55.0%
! GATCTAGAACCCCTGCAACC+AGG + chr3_2:62173426-62173445 None:intergenic 55.0%
ACGTGCAGACTCGTTGGGAG+AGG + chr3_2:62171667-62171686 None:intergenic 60.0%
TCCCAACGAGTCTGCACGTG+AGG - chr3_2:62171668-62171687 Msa0415760:three_prime_UTR 60.0%
CACCTCACGTGCAGACTCGT+TGG + chr3_2:62171673-62171692 None:intergenic 60.0%
CAACGAGTCTGCACGTGAGG+TGG - chr3_2:62171671-62171690 Msa0415760:three_prime_UTR 60.0%
! GCATGTGCTGGTGGAGAAGC+CGG - chr3_2:62171720-62171739 Msa0415760:CDS 60.0%
GAAGCCGGCAGCTCTTGATG+TGG - chr3_2:62171735-62171754 Msa0415760:CDS 60.0%
TCCGCCACATCAAGAGCTGC+CGG + chr3_2:62171742-62171761 None:intergenic 60.0%
TCCCGACGTCACACGAAACG+CGG - chr3_2:62172807-62172826 Msa0415760:intron 60.0%
ACGTGCAGACTCGTTGGGAG+AGG + chr3_2:62171667-62171686 None:intergenic 60.0%
TCCCAACGAGTCTGCACGTG+AGG - chr3_2:62171668-62171687 Msa0415760:three_prime_UTR 60.0%
CACCTCACGTGCAGACTCGT+TGG + chr3_2:62171673-62171692 None:intergenic 60.0%
CAACGAGTCTGCACGTGAGG+TGG - chr3_2:62171671-62171690 Msa0415760:three_prime_UTR 60.0%
! GCATGTGCTGGTGGAGAAGC+CGG - chr3_2:62171720-62171739 Msa0415760:CDS 60.0%
GAAGCCGGCAGCTCTTGATG+TGG - chr3_2:62171735-62171754 Msa0415760:CDS 60.0%
TCCGCCACATCAAGAGCTGC+CGG + chr3_2:62171742-62171761 None:intergenic 60.0%
TCCCGACGTCACACGAAACG+CGG - chr3_2:62172807-62172826 Msa0415760:intron 60.0%
! TGGCGATGGTGGCACAGCCT+AGG + chr3_2:62171468-62171487 None:intergenic 65.0%
GAGTCTGCACGTGAGGTGGG+CGG - chr3_2:62171675-62171694 Msa0415760:three_prime_UTR 65.0%
GCCGGCAGCTCTTGATGTGG+CGG - chr3_2:62171738-62171757 Msa0415760:CDS 65.0%
TCGTGTGACGTCGGGAAGCG+CGG + chr3_2:62172803-62172822 None:intergenic 65.0%
GCCGCGTTTCGTGTGACGTC+GGG + chr3_2:62172811-62172830 None:intergenic 65.0%
GGCCGCGTTTCGTGTGACGT+CGG + chr3_2:62172812-62172831 None:intergenic 65.0%
GACGTCACACGAAACGCGGC+CGG - chr3_2:62172811-62172830 Msa0415760:intron 65.0%
! TGGCGATGGTGGCACAGCCT+AGG + chr3_2:62171468-62171487 None:intergenic 65.0%
GAGTCTGCACGTGAGGTGGG+CGG - chr3_2:62171675-62171694 Msa0415760:three_prime_UTR 65.0%
GCCGGCAGCTCTTGATGTGG+CGG - chr3_2:62171738-62171757 Msa0415760:CDS 65.0%
TCGTGTGACGTCGGGAAGCG+CGG + chr3_2:62172803-62172822 None:intergenic 65.0%
GCCGCGTTTCGTGTGACGTC+GGG + chr3_2:62172811-62172830 None:intergenic 65.0%
GGCCGCGTTTCGTGTGACGT+CGG + chr3_2:62172812-62172831 None:intergenic 65.0%
GACGTCACACGAAACGCGGC+CGG - chr3_2:62172811-62172830 Msa0415760:intron 65.0%
! GGAAGCGCGGTGACGGTGGT+TGG + chr3_2:62172790-62172809 None:intergenic 70.0%
! GACGTCGGGAAGCGCGGTGA+CGG + chr3_2:62172797-62172816 None:intergenic 70.0%
! GGAAGCGCGGTGACGGTGGT+TGG + chr3_2:62172790-62172809 None:intergenic 70.0%
! GACGTCGGGAAGCGCGGTGA+CGG + chr3_2:62172797-62172816 None:intergenic 70.0%
! GTCGGGAAGCGCGGTGACGG+TGG + chr3_2:62172794-62172813 None:intergenic 75.0%
! GTCGGGAAGCGCGGTGACGG+TGG + chr3_2:62172794-62172813 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 62171397 62173568 62171397 ID=Msa0415760;Name=Msa0415760
chr3_2 mRNA 62171397 62173568 62171397 ID=Msa0415760-mRNA-1;Parent=Msa0415760;Name=Msa0415760-mRNA-1;_AED=0.01;_eAED=0.01;_QI=36|1|1|1|1|1|2|308|363
chr3_2 exon 62171397 62172325 62171397 ID=Msa0415760-mRNA-1:exon:13344;Parent=Msa0415760-mRNA-1
chr3_2 exon 62173062 62173568 62173062 ID=Msa0415760-mRNA-1:exon:13343;Parent=Msa0415760-mRNA-1
chr3_2 five_prime_UTR 62173533 62173568 62173533 ID=Msa0415760-mRNA-1:five_prime_utr;Parent=Msa0415760-mRNA-1
chr3_2 CDS 62173062 62173532 62173062 ID=Msa0415760-mRNA-1:cds;Parent=Msa0415760-mRNA-1
chr3_2 CDS 62171705 62172325 62171705 ID=Msa0415760-mRNA-1:cds;Parent=Msa0415760-mRNA-1
chr3_2 three_prime_UTR 62171397 62171704 62171397 ID=Msa0415760-mRNA-1:three_prime_utr;Parent=Msa0415760-mRNA-1
Gene Sequence

>Msa0415760

ATGACTGCGAAAGATACAGTGCGTTTTGGCATCCTAGGCTGTGCCACCATCGCCAGAAAACTAGCCAGAGCCATTACTCTCACTCCCAACGCCATCATCTCCGCCATAGGAAGCCGCTCCATATCAAAGGCATCAAAATTTGCCGTCGAAAACAGTTTACCAGCCAGTGTAAGAATCTATGGTAGCTATGATGAGGTTGTGGAGGATTCAGGTGTGGATGCAGTGTACATTCCTCTCCCAACGAGTCTGCACGTGAGGTGGGCGGTTGCTGCCGCGAGTAAGAAGAAGCATGTGCTGGTGGAGAAGCCGGCAGCTCTTGATGTGGCGGAGCTTGATTTGATCTTAGAAGCTTGTGAGGCCAATGGTGTGCAGTTTATGGATGGTTGTATGTGGTTGCATCACCCTAGGACTTTGAACATGGAACACTTGCTTGATCTTTCTAATTCCGATGGTATTGGACCCGTTCAATTTATCCATAGCACATCAACAATGCCAACAACTCAAGAATTCTTGGAGAATAACATTAGAGTAAAGCCAGAGTTGGATGCTCTTGGTGCCCTTGGTGACTTAGCATGGTACTGCATTGGTGCATCCTTATGGGCAAAGGGCTACAAGCTACCAACCACCGTCACCGCGCTTCCCGACGTCACACGAAACGCGGCCGGAGTCATATTATCAATCACATCTTCTTTGCAATGGGACCAACCAAATCAAACAGTTGCAAATATTCACTGCTCATTTCTTTCTCACACGTCCATGGACTTATCTATAAGTGGTTCCAATGGGTCTATGCATCTTAAGGACTTCATAATCCCATACAAGGAGACTAGTGCTTCATTTGACTTCACATTTGGTGCAAAATTTGTTGATCTTCACATTGGGTGGAATGTGAGACCAGAGGAAGTTCATGTTGCCAACAAGCTCCCTCAAGAAGCTTTGATGATACAAGAGTTTGCTAGGCTTGTTGCAAGTATTAGAGATTATGGGTCTCAGCCTTCTACAAAATGGCCAGAAATTAGTAGAAAGACTCAATTGGTAGTTGATGCTGTGAAAAAGTCTTTAGAGCTTGGCTGCAAACCTGTTTCCTTATAG

Protein sequence

>Msa0415760

MTAKDTVRFGILGCATIARKLARAITLTPNAIISAIGSRSISKASKFAVENSLPASVRIYGSYDEVVEDSGVDAVYIPLPTSLHVRWAVAAASKKKHVLVEKPAALDVAELDLILEACEANGVQFMDGCMWLHHPRTLNMEHLLDLSNSDGIGPVQFIHSTSTMPTTQEFLENNIRVKPELDALGALGDLAWYCIGASLWAKGYKLPTTVTALPDVTRNAAGVILSITSSLQWDQPNQTVANIHCSFLSHTSMDLSISGSNGSMHLKDFIIPYKETSASFDFTFGAKFVDLHIGWNVRPEEVHVANKLPQEALMIQEFARLVASIRDYGSQPSTKWPEISRKTQLVVDAVKKSLELGCKPVSL*