AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0820130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820130 MtrunA17_Chr5g0439941 87.770 139 14 2 1 139 1 136 6.53e-77 226
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820130 AT3G44020.1 66.265 83 20 2 62 139 58 137 7.80e-31 109

Find 32 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCCATTAAACAGCAAAA+TGG 0.276035 5_3:-57287756 None:intergenic
TTCTCTCTTCCTTGGCTTCA+AGG 0.279546 5_3:+57287850 Msa0820130:CDS
TCTTGCTACTGTTAGTGTTT+TGG 0.296738 5_3:+57287814 Msa0820130:CDS
TGCAAGAAATGTGCAGGTTC+TGG 0.343838 5_3:+57290257 Msa0820130:CDS
ATTGCTCTTTCTCTCTTCCT+TGG 0.362846 5_3:+57287842 Msa0820130:CDS
AAGCCATTAAACAGCAAAAT+GGG 0.370822 5_3:-57287755 None:intergenic
GTCCATGATCATCAAGAATC+TGG 0.395675 5_3:-57287732 None:intergenic
ATTCAAAGCTCATAACCTTC+GGG 0.418762 5_3:-57290285 None:intergenic
AATTCAAAGCTCATAACCTT+CGG 0.437358 5_3:-57290286 None:intergenic
TTCGTCTGCATTTGGAGGAT+TGG 0.450992 5_3:-57287697 None:intergenic
GGAGGATTGGAAGTAGAACT+TGG 0.460291 5_3:-57287684 None:intergenic
ATCCAGATTCTTGATGATCA+TGG 0.464032 5_3:+57287730 Msa0820130:CDS
CTTGAAGAAGAAGAAGATAG+AGG 0.483415 5_3:-57287590 None:intergenic
TTGTATGTGGAGCTAAGTTA+AGG 0.484548 5_3:-57287494 None:intergenic
AGGAGAAGAAGAAAGATGAA+TGG 0.496278 5_3:-57287615 None:intergenic
TTGGATGAAGAAGAAGGTTG+TGG 0.522130 5_3:-57287665 None:intergenic
AATTATCAAGGACACATCAC+AGG 0.525647 5_3:-57290421 None:intergenic
TAGAACTTGGATGAAGAAGA+AGG 0.541383 5_3:-57287671 None:intergenic
GTACTCTGCAAGAAATGTGC+AGG 0.545148 5_3:+57290251 Msa0820130:CDS
TATGCATATAGCAATTATCA+AGG 0.550003 5_3:-57290433 None:intergenic
AGAGAAGATGTAGAAGAACA+AGG 0.567040 5_3:-57287635 None:intergenic
TTGTAGTTACCTTGAAGCCA+AGG 0.574832 5_3:-57287859 None:intergenic
CAGGTTCTGGCTATTCCCGA+AGG 0.584403 5_3:+57290270 Msa0820130:CDS
TGTGAGCGATGTGGTGGCAA+CGG 0.597613 5_3:+57288856 Msa0820130:CDS
GTTGCCACCACATCGCTCAC+AGG 0.615446 5_3:-57288854 None:intergenic
CCACATCGCTCACAGGACAC+CGG 0.618890 5_3:-57288847 None:intergenic
CAAGATCTTAAAGATGTCAG+AGG 0.625937 5_3:-57290333 None:intergenic
GTGTCCTGTGAGCGATGTGG+TGG 0.626347 5_3:+57288850 Msa0820130:CDS
AAGGAAGAGAGAAAGAGCAA+TGG 0.658609 5_3:-57287840 None:intergenic
AGCCATTAAACAGCAAAATG+GGG 0.675128 5_3:-57287754 None:intergenic
ATTATCAAGGACACATCACA+GGG 0.688379 5_3:-57290420 None:intergenic
CCGGTGTCCTGTGAGCGATG+TGG 0.724930 5_3:+57288847 Msa0820130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATTTGTATTGTATG+TGG - chr5_3:57287510-57287529 None:intergenic 15.0%
!!! TTTCTTTTTCTTTTTATCAA+TGG + chr5_3:57287541-57287560 Msa0820130:exon 15.0%
!! AAACAACAAATACATTATTA+TGG - chr5_3:57287931-57287950 None:intergenic 15.0%
!!! TGTTTTTGTTAATATAGTTA+TGG + chr5_3:57287946-57287965 Msa0820130:intron 15.0%
!! ATTATTAATGCTTTATACTT+TGG + chr5_3:57288941-57288960 Msa0820130:intron 15.0%
!!! TTATAATATTGGTTCAAAAT+TGG - chr5_3:57289113-57289132 None:intergenic 15.0%
!!! AATAACAATTTTTTGTATGT+AGG - chr5_3:57289883-57289902 None:intergenic 15.0%
!! TACATACAAAAAATTGTTAT+TGG + chr5_3:57289882-57289901 Msa0820130:intron 15.0%
!! GAACTGTTTGATAAAATTAA+CGG - chr5_3:57288292-57288311 None:intergenic 20.0%
!!! AGAAATGTGTTTATTTTAGT+GGG + chr5_3:57288420-57288439 Msa0820130:intron 20.0%
!!! TCTTTTGCAAAAATTTTACA+CGG + chr5_3:57288494-57288513 Msa0820130:intron 20.0%
!!! TAATGTTATTCATGATTTTG+TGG + chr5_3:57288530-57288549 Msa0820130:intron 20.0%
!! ACAAACTTATTATCAATAAC+TGG - chr5_3:57288594-57288613 None:intergenic 20.0%
!!! TAAAGCATTAATAATTTCGA+TGG - chr5_3:57288936-57288955 None:intergenic 20.0%
!!! ATTTTTAATATTACCAGTGA+GGG + chr5_3:57288982-57289001 Msa0820130:intron 20.0%
!!! ACCAATATTATAAGCTATTT+TGG + chr5_3:57289120-57289139 Msa0820130:intron 20.0%
!!! CCAATATTATAAGCTATTTT+GGG + chr5_3:57289121-57289140 Msa0820130:intron 20.0%
!! CATAGTGATAATTTATTGAA+AGG - chr5_3:57289331-57289350 None:intergenic 20.0%
!! ATAAATTATCACTATGTAGA+TGG + chr5_3:57289335-57289354 Msa0820130:intron 20.0%
!! AAAAAACATTCTACTAAAGA+TGG - chr5_3:57289979-57289998 None:intergenic 20.0%
!!! TAATTCACATTTTTTAGGAT+TGG + chr5_3:57290229-57290248 Msa0820130:intron 20.0%
!!! CAGAAATGTGTTTATTTTAG+TGG + chr5_3:57288419-57288438 Msa0820130:intron 25.0%
! AAATCAAACTCATGAATAGA+TGG - chr5_3:57288462-57288481 None:intergenic 25.0%
!!! TGATTTTGTGGTTTTTAAGA+TGG + chr5_3:57288542-57288561 Msa0820130:intron 25.0%
! TTGATTGGAAAAACCTTTAT+TGG + chr5_3:57288639-57288658 Msa0820130:intron 25.0%
! TGATTGGAAAAACCTTTATT+GGG + chr5_3:57288640-57288659 Msa0820130:intron 25.0%
! GAACTTCAGATATCTATTAT+AGG + chr5_3:57288685-57288704 Msa0820130:intron 25.0%
!! TTTGGTAACAATAAACTTGT+GGG + chr5_3:57288767-57288786 Msa0820130:intron 25.0%
!! CATTTTTAATATTACCAGTG+AGG + chr5_3:57288981-57289000 Msa0820130:intron 25.0%
!! TTTTTAATATTACCAGTGAG+GGG + chr5_3:57288983-57289002 Msa0820130:intron 25.0%
! CCCAAAATAGCTTATAATAT+TGG - chr5_3:57289124-57289143 None:intergenic 25.0%
! AATAAAAACATGGTAACTAG+TGG - chr5_3:57289279-57289298 None:intergenic 25.0%
! TTGCTTTGTATATGAAGTAA+AGG + chr5_3:57289682-57289701 Msa0820130:intron 25.0%
! TGCTTTGTATATGAAGTAAA+GGG + chr5_3:57289683-57289702 Msa0820130:intron 25.0%
!!! AAATGTGTTTTTTGCAACAA+CGG + chr5_3:57289782-57289801 Msa0820130:CDS 25.0%
!!! TTAGTAGAATGTTTTTTGCT+AGG + chr5_3:57289982-57290001 Msa0820130:intron 25.0%
! GATTTATTCAAATTCCAGTA+TGG - chr5_3:57290043-57290062 None:intergenic 25.0%
!! GATATAGTGTTGTTAAATAG+TGG + chr5_3:57290087-57290106 Msa0820130:intron 25.0%
!!! GTGTCTAATTCACATTTTTT+AGG + chr5_3:57290224-57290243 Msa0820130:intron 25.0%
! TATGCATATAGCAATTATCA+AGG - chr5_3:57290436-57290455 None:intergenic 25.0%
! ATCAAGAATCTGGATTTTGT+TGG - chr5_3:57287725-57287744 None:intergenic 30.0%
AAGCCATTAAACAGCAAAAT+GGG - chr5_3:57287758-57287777 None:intergenic 30.0%
TAAGCCATTAAACAGCAAAA+TGG - chr5_3:57287759-57287778 None:intergenic 30.0%
!!! ATTTTGCTGTTTAATGGCTT+AGG + chr5_3:57287758-57287777 Msa0820130:CDS 30.0%
TTTGGTAAAAACGTATCAGA+TGG - chr5_3:57288358-57288377 None:intergenic 30.0%
TAGTAACCAAAAAGAACCTT+AGG + chr5_3:57288396-57288415 Msa0820130:intron 30.0%
AATAAACACATTTCTGCCTA+AGG - chr5_3:57288415-57288434 None:intergenic 30.0%
!!! TTTATTTTAGTGGGTCCAAA+TGG + chr5_3:57288429-57288448 Msa0820130:intron 30.0%
ATAGATGGAATTAGTCCATT+TGG - chr5_3:57288447-57288466 None:intergenic 30.0%
!!! TTGTGGTTTTTAAGATGGTA+TGG + chr5_3:57288547-57288566 Msa0820130:intron 30.0%
ATTCAATTATGAGTTTCTGC+TGG + chr5_3:57288614-57288633 Msa0820130:intron 30.0%
GATTGGAAAAACCTTTATTG+GGG + chr5_3:57288641-57288660 Msa0820130:intron 30.0%
! GTTTGGTAACAATAAACTTG+TGG + chr5_3:57288766-57288785 Msa0820130:intron 30.0%
!!! GATACTTTGTTTTGGACTTT+TGG + chr5_3:57288795-57288814 Msa0820130:intron 30.0%
GGTAATTATCTTTCTGCAAT+TGG + chr5_3:57288877-57288896 Msa0820130:intron 30.0%
! CTTGCTTAAAAACATTGACT+TGG + chr5_3:57289017-57289036 Msa0820130:intron 30.0%
!! TTAAAAACATTGACTTGGCT+AGG + chr5_3:57289022-57289041 Msa0820130:intron 30.0%
GGGTAAGGAAAATAAAAACA+TGG - chr5_3:57289289-57289308 None:intergenic 30.0%
AGACCTATGTAGACATATAT+CGG - chr5_3:57289504-57289523 None:intergenic 30.0%
GCTTTGTATATGAAGTAAAG+GGG + chr5_3:57289684-57289703 Msa0820130:intron 30.0%
ATTCTACTAAAGATGGTACA+GGG - chr5_3:57289972-57289991 None:intergenic 30.0%
AAACCAGTGTTGTAAAATAG+CGG + chr5_3:57290005-57290024 Msa0820130:intron 30.0%
GTGAAAACCAACATATTTCA+CGG + chr5_3:57290183-57290202 Msa0820130:intron 30.0%
GATTATACCGTGAAATATGT+TGG - chr5_3:57290193-57290212 None:intergenic 30.0%
AATTCAAAGCTCATAACCTT+CGG - chr5_3:57290289-57290308 None:intergenic 30.0%
CTTGAAGAAGAAGAAGATAG+AGG - chr5_3:57287593-57287612 None:intergenic 35.0%
AGGAGAAGAAGAAAGATGAA+TGG - chr5_3:57287618-57287637 None:intergenic 35.0%
AGAGAAGATGTAGAAGAACA+AGG - chr5_3:57287638-57287657 None:intergenic 35.0%
TAGAACTTGGATGAAGAAGA+AGG - chr5_3:57287674-57287693 None:intergenic 35.0%
! ATCCAGATTCTTGATGATCA+TGG + chr5_3:57287730-57287749 Msa0820130:CDS 35.0%
AGCCATTAAACAGCAAAATG+GGG - chr5_3:57287757-57287776 None:intergenic 35.0%
! TCTTGCTACTGTTAGTGTTT+TGG + chr5_3:57287814-57287833 Msa0820130:CDS 35.0%
! GTAGTGATTCTTGTTTCATG+AGG + chr5_3:57288094-57288113 Msa0820130:intron 35.0%
AGAAGTAGCGTCTCAAAAAA+TGG - chr5_3:57288146-57288165 None:intergenic 35.0%
TTGGTTACTATACACGTCTA+AGG - chr5_3:57288386-57288405 None:intergenic 35.0%
! TTTCTGCCTAAGGTTCTTTT+TGG - chr5_3:57288405-57288424 None:intergenic 35.0%
CCAAACGAAATAACTTCTTC+TGG - chr5_3:57288752-57288771 None:intergenic 35.0%
! CCAGAAGAAGTTATTTCGTT+TGG + chr5_3:57288749-57288768 Msa0820130:intron 35.0%
!! GGGTCAATGATACTTTGTTT+TGG + chr5_3:57288787-57288806 Msa0820130:intron 35.0%
CTAGGATAGCTGTTGTTAAA+AGG + chr5_3:57289040-57289059 Msa0820130:intron 35.0%
GACAAAGCAGATATAGAAAG+GGG - chr5_3:57289309-57289328 None:intergenic 35.0%
GGACAAAGCAGATATAGAAA+GGG - chr5_3:57289310-57289329 None:intergenic 35.0%
AGGACAAAGCAGATATAGAA+AGG - chr5_3:57289311-57289330 None:intergenic 35.0%
GTAGATGGAGATACATTGTA+TGG + chr5_3:57289350-57289369 Msa0820130:intron 35.0%
CTCTGTAAGTACTTCAAAAC+CGG - chr5_3:57289386-57289405 None:intergenic 35.0%
! TTTGAAGTACTTACAGAGAC+AGG + chr5_3:57289388-57289407 Msa0820130:intron 35.0%
GTCAATGTCAGAGTTGTATT+TGG - chr5_3:57289418-57289437 None:intergenic 35.0%
ACACCGATATATGTCTACAT+AGG + chr5_3:57289498-57289517 Msa0820130:intron 35.0%
! TTAAAACAGTGAGAGTGCAA+TGG - chr5_3:57289621-57289640 None:intergenic 35.0%
CTCTTGATTAAGGAACAAAC+AGG - chr5_3:57289657-57289676 None:intergenic 35.0%
CTGTTTGTTCCTTAATCAAG+AGG + chr5_3:57289655-57289674 Msa0820130:intron 35.0%
AAACGCCATTATTGATAAGC+AGG + chr5_3:57289752-57289771 Msa0820130:intron 35.0%
TTCCACCTGCTTATCAATAA+TGG - chr5_3:57289760-57289779 None:intergenic 35.0%
GCAAGATGAAAAAAGAGACT+GGG + chr5_3:57289804-57289823 Msa0820130:CDS 35.0%
TTCTACTAAAGATGGTACAG+GGG - chr5_3:57289971-57289990 None:intergenic 35.0%
CATTCTACTAAAGATGGTAC+AGG - chr5_3:57289973-57289992 None:intergenic 35.0%
ATTCAAAGCTCATAACCTTC+GGG - chr5_3:57290288-57290307 None:intergenic 35.0%
CAAGATCTTAAAGATGTCAG+AGG - chr5_3:57290336-57290355 None:intergenic 35.0%
ATTATCAAGGACACATCACA+GGG - chr5_3:57290423-57290442 None:intergenic 35.0%
AATTATCAAGGACACATCAC+AGG - chr5_3:57290424-57290443 None:intergenic 35.0%
TTGGATGAAGAAGAAGGTTG+TGG - chr5_3:57287668-57287687 None:intergenic 40.0%
!!! TGTTGGTTTTCGTCTGCATT+TGG - chr5_3:57287708-57287727 None:intergenic 40.0%
GTCCATGATCATCAAGAATC+TGG - chr5_3:57287735-57287754 None:intergenic 40.0%
!!! GACCCCATTTTGCTGTTTAA+TGG + chr5_3:57287752-57287771 Msa0820130:CDS 40.0%
AAGGAAGAGAGAAAGAGCAA+TGG - chr5_3:57287843-57287862 None:intergenic 40.0%
ATTGCTCTTTCTCTCTTCCT+TGG + chr5_3:57287842-57287861 Msa0820130:CDS 40.0%
TTGTAGTTACCTTGAAGCCA+AGG - chr5_3:57287862-57287881 None:intergenic 40.0%
!! GTTTTTCGAAACCACTAGCT+CGG + chr5_3:57288047-57288066 Msa0820130:intron 40.0%
!! ATTTTGATCATCCGAGCTAG+TGG - chr5_3:57288061-57288080 None:intergenic 40.0%
!!! TTTTGAGACGCTACTTCTAG+TGG + chr5_3:57288148-57288167 Msa0820130:intron 40.0%
! TACACGTCTAAGGTTCTGTT+TGG - chr5_3:57288376-57288395 None:intergenic 40.0%
!!! GAGTTTCTGCTGGTTTTGAT+TGG + chr5_3:57288624-57288643 Msa0820130:intron 40.0%
TGGAAAAACCTTTATTGGGG+TGG + chr5_3:57288644-57288663 Msa0820130:intron 40.0%
GGAAAAACCTTTATTGGGGT+GGG + chr5_3:57288645-57288664 Msa0820130:intron 40.0%
GAAAAACCTTTATTGGGGTG+GGG + chr5_3:57288646-57288665 Msa0820130:intron 40.0%
AAAAACCTTTATTGGGGTGG+GGG + chr5_3:57288647-57288666 Msa0820130:intron 40.0%
!!! GACTTTTGGTAACGAGTGAT+GGG + chr5_3:57288809-57288828 Msa0820130:intron 40.0%
AAGGAAGATTGTTTGAGCGA+TGG + chr5_3:57289059-57289078 Msa0820130:intron 40.0%
AGCAGATATAGAAAGGGGTA+AGG - chr5_3:57289304-57289323 None:intergenic 40.0%
ATTGTATGGCTACGTATCAC+CGG + chr5_3:57289364-57289383 Msa0820130:intron 40.0%
TCTACATAGGTCTCCAGAAT+GGG + chr5_3:57289511-57289530 Msa0820130:intron 40.0%
AGCAAGACTCCTCTTGATTA+AGG - chr5_3:57289667-57289686 None:intergenic 40.0%
GGCAAGATGAAAAAAGAGAC+TGG + chr5_3:57289803-57289822 Msa0820130:CDS 40.0%
GATGAAAAAAGAGACTGGGT+TGG + chr5_3:57289808-57289827 Msa0820130:CDS 40.0%
GTTGACTGCAAAGTATGCAA+GGG + chr5_3:57289830-57289849 Msa0820130:intron 40.0%
!! TAGCCGCTATTTTACAACAC+TGG - chr5_3:57290011-57290030 None:intergenic 40.0%
GCTAAGCTACAATGCTATAG+TGG - chr5_3:57290121-57290140 None:intergenic 40.0%
! AAGAGTGCAGTGAAAAAGCG+TGG - chr5_3:57287567-57287586 None:intergenic 45.0%
GGAGGATTGGAAGTAGAACT+TGG - chr5_3:57287687-57287706 None:intergenic 45.0%
TTCGTCTGCATTTGGAGGAT+TGG - chr5_3:57287700-57287719 None:intergenic 45.0%
! TGGTTTTCGTCTGCATTTGG+AGG - chr5_3:57287705-57287724 None:intergenic 45.0%
TTCTCTCTTCCTTGGCTTCA+AGG + chr5_3:57287850-57287869 Msa0820130:CDS 45.0%
!!! GGACTTTTGGTAACGAGTGA+TGG + chr5_3:57288808-57288827 Msa0820130:intron 45.0%
!! AACGAGTGATGGGATTTTGC+AGG + chr5_3:57288819-57288838 Msa0820130:intron 45.0%
!! ACGAGTGATGGGATTTTGCA+GGG + chr5_3:57288820-57288839 Msa0820130:intron 45.0%
! TACTTTGGTCTGAGAGTGTG+AGG + chr5_3:57288956-57288975 Msa0820130:intron 45.0%
GTCTACATAGGTCTCCAGAA+TGG + chr5_3:57289510-57289529 Msa0820130:intron 45.0%
CTACATAGGTCTCCAGAATG+GGG + chr5_3:57289512-57289531 Msa0820130:intron 45.0%
ATCACCTTCTTTCCCCATTC+TGG - chr5_3:57289527-57289546 None:intergenic 45.0%
CGCCATTATTGATAAGCAGG+TGG + chr5_3:57289755-57289774 Msa0820130:intron 45.0%
GGTTGACTGCAAAGTATGCA+AGG + chr5_3:57289829-57289848 Msa0820130:intron 45.0%
TGCAAAGTATGCAAGGGTTC+AGG + chr5_3:57289836-57289855 Msa0820130:intron 45.0%
GTACTCTGCAAGAAATGTGC+AGG + chr5_3:57290251-57290270 Msa0820130:CDS 45.0%
TGCAAGAAATGTGCAGGTTC+TGG + chr5_3:57290257-57290276 Msa0820130:CDS 45.0%
!! TTTATTTAATATGAATAATT+TGG + chr5_3:57289937-57289956 Msa0820130:intron 5.0%
!! TTATTTAATATGAATAATTT+GGG + chr5_3:57289938-57289957 Msa0820130:intron 5.0%
ACAAACCCCCACCCCAATAA+AGG - chr5_3:57288655-57288674 None:intergenic 50.0%
TTTATTGGGGTGGGGGTTTG+TGG + chr5_3:57288654-57288673 Msa0820130:intron 50.0%
GTGGGGGTTTGTGGTTTGAA+TGG + chr5_3:57288663-57288682 Msa0820130:intron 50.0%
! TGGGATTTTGCAGGGTGATC+CGG + chr5_3:57288828-57288847 Msa0820130:intron 50.0%
TGAGCGATGGTGCAAAAGAG+AGG + chr5_3:57289072-57289091 Msa0820130:intron 50.0%
GAGCGATGGTGCAAAAGAGA+GGG + chr5_3:57289073-57289092 Msa0820130:intron 50.0%
CGATACTCACGTGTGTGGTT+CGG - chr5_3:57289477-57289496 None:intergenic 50.0%
CGAACCACACACGTGAGTAT+CGG + chr5_3:57289475-57289494 Msa0820130:intron 50.0%
GTCTCCAGAATGGGGAAAGA+AGG + chr5_3:57289520-57289539 Msa0820130:intron 50.0%
GGCTATAGTGTACGCCATAC+TGG + chr5_3:57290026-57290045 Msa0820130:intron 50.0%
! TTTTCCGCGATCTGCGATTC+TGG + chr5_3:57290161-57290180 Msa0820130:intron 50.0%
TTCACCAGAATCGCAGATCG+CGG - chr5_3:57290168-57290187 None:intergenic 50.0%
TGTGAGCGATGTGGTGGCAA+CGG + chr5_3:57288856-57288875 Msa0820130:CDS 55.0%
! GTGACTTGTCATCCCCTCAC+TGG - chr5_3:57288998-57289017 None:intergenic 55.0%
CCATATGCCCTCGCGTAAGA+CGG + chr5_3:57289243-57289262 Msa0820130:intron 55.0%
GCTATGACCGTCTTACGCGA+GGG - chr5_3:57289253-57289272 None:intergenic 55.0%
TGCTATGACCGTCTTACGCG+AGG - chr5_3:57289254-57289273 None:intergenic 55.0%
GTGTCCGATACTCACGTGTG+TGG - chr5_3:57289482-57289501 None:intergenic 55.0%
! CAGGTTCTGGCTATTCCCGA+AGG + chr5_3:57290270-57290289 Msa0820130:CDS 55.0%
CCACATCGCTCACAGGACAC+CGG - chr5_3:57288850-57288869 None:intergenic 60.0%
GTGTCCTGTGAGCGATGTGG+TGG + chr5_3:57288850-57288869 Msa0820130:CDS 60.0%
GTTGCCACCACATCGCTCAC+AGG - chr5_3:57288857-57288876 None:intergenic 60.0%
! CCGTCTTACGCGAGGGCATA+TGG - chr5_3:57289246-57289265 None:intergenic 60.0%
CCGGTGTCCTGTGAGCGATG+TGG + chr5_3:57288847-57288866 Msa0820130:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 57287495 57290583 57287495 ID=Msa0820130;Name=Msa0820130
chr5_3 mRNA 57287495 57290583 57287495 ID=Msa0820130-mRNA-1;Parent=Msa0820130;Name=Msa0820130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=65|0.66|0.75|1|1|1|4|278|158
chr5_3 exon 57287495 57287871 57287495 ID=Msa0820130-mRNA-1:exon:17309;Parent=Msa0820130-mRNA-1
chr5_3 exon 57288841 57288877 57288841 ID=Msa0820130-mRNA-1:exon:17310;Parent=Msa0820130-mRNA-1
chr5_3 exon 57289774 57289841 57289774 ID=Msa0820130-mRNA-1:exon:17311;Parent=Msa0820130-mRNA-1
chr5_3 exon 57290246 57290583 57290246 ID=Msa0820130-mRNA-1:exon:17312;Parent=Msa0820130-mRNA-1
chr5_3 five_prime_UTR 57287495 57287559 57287495 ID=Msa0820130-mRNA-1:five_prime_utr;Parent=Msa0820130-mRNA-1
chr5_3 CDS 57287560 57287871 57287560 ID=Msa0820130-mRNA-1:cds;Parent=Msa0820130-mRNA-1
chr5_3 CDS 57288841 57288877 57288841 ID=Msa0820130-mRNA-1:cds;Parent=Msa0820130-mRNA-1
chr5_3 CDS 57289774 57289841 57289774 ID=Msa0820130-mRNA-1:cds;Parent=Msa0820130-mRNA-1
chr5_3 CDS 57290246 57290305 57290246 ID=Msa0820130-mRNA-1:cds;Parent=Msa0820130-mRNA-1
chr5_3 three_prime_UTR 57290306 57290583 57290306 ID=Msa0820130-mRNA-1:three_prime_utr;Parent=Msa0820130-mRNA-1
Gene Sequence

>Msa0820130

ATGGCCACGCTTTTTCACTGCACTCTTCATCCTCTATCTTCTTCTTCTTCAAGCTCCATTCATCTTTCTTCTTCTCCTTGTTCTTCTACATCTTCTCTTACACTTCCACAACCTTCTTCTTCATCCAAGTTCTACTTCCAATCCTCCAAATGCAGACGAAAACCAACAAAATCCAGATTCTTGATGATCATGGACCCCATTTTGCTGTTTAATGGCTTAGGTAGTAGTGCTTTCTATATTGATACACAAACACTTCTTGCTACTGTTAGTGTTTTGGCTGCCATTGCTCTTTCTCTCTTCCTTGGCTTCAAGGGTGATCCGGTGTCCTGTGAGCGATGTGGTGGCAACGGTGGAACAAAATGTGTTTTTTGCAACAACGGCAAGATGAAAAAAGAGACTGGGTTGGTTGACTGCAAAGATTGGTACTCTGCAAGAAATGTGCAGGTTCTGGCTATTCCCGAAGGTTATGAGCTTTGA

Protein sequence

>Msa0820130

MATLFHCTLHPLSSSSSSSIHLSSSPCSSTSSLTLPQPSSSSKFYFQSSKCRRKPTKSRFLMIMDPILLFNGLGSSAFYIDTQTLLATVSVLAAIALSLFLGFKGDPVSCERCGGNGGTKCVFCNNGKMKKETGLVDCKDWYSARNVQVLAIPEGYEL*