AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1452570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452570 MtrunA17_Chr1g0160891 86.607 112 13 1 17 128 17 126 1.90e-64 197
Msa1452570 MtrunA17_Chr3g0085891 73.451 113 27 2 17 127 15 126 6.78e-52 165
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 88 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAGACGGTTATGTAAAT+TGG 0.163349 tig0034029:+15165 Msa1452570:CDS
CTGCTTGCGCTTGCGCTTGC+GGG 0.178041 tig0034029:-14768 None:intergenic
TGCGCTTGCGCTTGCGGGTT+AGG 0.190357 tig0034029:-14763 None:intergenic
TCGAATTTCAGCGTCGTAAA+TGG 0.202754 tig0034029:+14903 Msa1452570:intron
GCCTGGTATTATCACTTTAC+TGG 0.212744 tig0034029:+20042 Msa1452570:CDS
CAGATCTGCTCCTTATTTCT+TGG 0.214228 tig0034029:+15210 Msa1452570:CDS
GTAGATGAATAAGTACATTT+TGG 0.228546 tig0034029:+20342 Msa1452570:three_prime_UTR
CATATGAAATCACCTTCTTC+TGG 0.244250 tig0034029:-15758 None:intergenic
CGCTTGCGGGTTAGGGATGC+AGG 0.249593 tig0034029:-14755 None:intergenic
AGAATTACGAAGCTGTAATT+TGG 0.264417 tig0034029:-20101 None:intergenic
TCATCATGCATCCTAGGAAT+TGG 0.282636 tig0034029:+20445 Msa1452570:three_prime_UTR
AGTTTACGACGAATTTATTA+AGG 0.288971 tig0034029:+15561 Msa1452570:CDS
GCTTATTGAGAAGTTAAATA+AGG 0.314668 tig0034029:+20369 Msa1452570:three_prime_UTR
GCGCTTGCGCTTGCGGGTTA+GGG 0.323084 tig0034029:-14762 None:intergenic
TTTATTAAGGAGTTGGTTCC+AGG 0.330389 tig0034029:+15574 Msa1452570:CDS
GAAGTTAAATAAGGTAATCT+TGG 0.337633 tig0034029:+20378 Msa1452570:three_prime_UTR
GATTATAATGTTGATGATAC+TGG 0.337667 tig0034029:+20019 Msa1452570:CDS
GCCTTCTCCTCCAAGAAATA+AGG 0.350680 tig0034029:-15220 None:intergenic
CCAAGATGGTGATTATAATC+AGG 0.351090 tig0034029:+17744 Msa1452570:CDS
TTTCCACATTTCCTGCAATC+TGG 0.358352 tig0034029:+20486 Msa1452570:three_prime_UTR
TCTGCTTGCGCTTGCGCTTG+CGG 0.364170 tig0034029:-14769 None:intergenic
TCCTGCAATCTGGCACTACT+TGG 0.387316 tig0034029:+20496 Msa1452570:three_prime_UTR
CATCATGCATCCTAGGAATT+GGG 0.390260 tig0034029:+20446 Msa1452570:three_prime_UTR
ACCAAGTAGTGCCAGATTGC+AGG 0.392105 tig0034029:-20497 None:intergenic
ATCTTGGGTTAATTTGTACT+TGG 0.401261 tig0034029:+20394 Msa1452570:three_prime_UTR
CTTATTTCATCATGCATCCT+AGG 0.416017 tig0034029:+20439 Msa1452570:three_prime_UTR
TAGCATGGACTATTGCTTCA+AGG 0.428466 tig0034029:+20236 Msa1452570:three_prime_UTR
CATAGAAGCATCCACTTCTC+CGG 0.429191 tig0034029:-15146 None:intergenic
GGCTGGCAGAGGAGGAGGAT+GGG 0.431458 tig0034029:+14924 Msa1452570:CDS
CGACGAATTTATTAAGGAGT+TGG 0.435035 tig0034029:+15567 Msa1452570:CDS
TGCATCCTAGGAATTGGGTT+TGG 0.441374 tig0034029:+20451 Msa1452570:three_prime_UTR
ATCTGCTCCTTATTTCTTGG+AGG 0.442959 tig0034029:+15213 Msa1452570:CDS
CCTGATTATAATCACCATCT+TGG 0.443552 tig0034029:-17744 None:intergenic
TGAATTCTAAGCTATCTATA+TGG 0.444082 tig0034029:+20175 Msa1452570:three_prime_UTR
ATATGAAATCACCTTCTTCT+GGG 0.447996 tig0034029:-15757 None:intergenic
ACTTCTCCGGGTTTAGCATC+AGG 0.450187 tig0034029:-15133 None:intergenic
TACTCGTGATTCTCTGCCAC+AGG 0.453424 tig0034029:+15534 Msa1452570:CDS
TCCTTATTTCTTGGAGGAGA+AGG 0.454052 tig0034029:+15219 Msa1452570:CDS
AAGTTAAATAAGGTAATCTT+GGG 0.464421 tig0034029:+20379 Msa1452570:three_prime_UTR
TCTACTCAATCAACTACATA+AGG 0.466514 tig0034029:-20324 None:intergenic
GGAGGAGAAGGCACAATTCA+AGG 0.468367 tig0034029:+15231 Msa1452570:CDS
ACCATCTTGGAAATCATCTT+CGG 0.470010 tig0034029:-17731 None:intergenic
GGATTCCGTGGACGTGGAAG+AGG 0.483614 tig0034029:+14946 Msa1452570:CDS
GCTGGCAGAGGAGGAGGATG+GGG 0.488705 tig0034029:+14925 Msa1452570:CDS
AGAAACCAAACCCAATTCCT+AGG 0.495396 tig0034029:-20456 None:intergenic
GGATGGGGATTCCGTGGACG+TGG 0.497022 tig0034029:+14940 Msa1452570:CDS
TCTTGGGTTAATTTGTACTT+GGG 0.511252 tig0034029:+20395 Msa1452570:three_prime_UTR
CAGGTAAAACTATGCTGAGC+CGG 0.511315 tig0034029:+15717 Msa1452570:intron
CAGAGAATCACGAGTAAAGC+TGG 0.512092 tig0034029:-15527 None:intergenic
ATAGAAGCATCCACTTCTCC+GGG 0.517532 tig0034029:-15145 None:intergenic
TAAATGGCTGGCAGAGGAGG+AGG 0.522366 tig0034029:+14919 Msa1452570:exon
TGGCTGGCAGAGGAGGAGGA+TGG 0.533763 tig0034029:+14923 Msa1452570:CDS
TGAAGAAAACGGTGGGATGA+AGG 0.541444 tig0034029:-14828 None:intergenic
AAAGAAGTTACCGTCGTGAC+GGG 0.543662 tig0034029:+14791 Msa1452570:five_prime_UTR
AATTTGCCTGATGCTAAACC+CGG 0.548121 tig0034029:+15127 Msa1452570:CDS
GTATTACGTAGCAGTTAAGC+TGG 0.550673 tig0034029:-20124 None:intergenic
TCGTAAATGGCTGGCAGAGG+AGG 0.554599 tig0034029:+14916 Msa1452570:exon
TCCGAAGATGATTTCCAAGA+TGG 0.555090 tig0034029:+17730 Msa1452570:CDS
ATTTCAGCGTCGTAAATGGC+TGG 0.557038 tig0034029:+14907 Msa1452570:intron
GCGTCGTAAATGGCTGGCAG+AGG 0.562628 tig0034029:+14913 Msa1452570:intron
CGTACATGGAACCCAGAAGA+AGG 0.566920 tig0034029:+15746 Msa1452570:CDS
AATGTTGATGATACTGGGCC+TGG 0.568289 tig0034029:+20025 Msa1452570:CDS
AATCAAATAATTTCATATAG+CGG 0.570338 tig0034029:-20270 None:intergenic
GCTTGCGGGTTAGGGATGCA+GGG 0.571875 tig0034029:-14754 None:intergenic
GGAGGAGGATGGGGATTCCG+TGG 0.572114 tig0034029:+14934 Msa1452570:CDS
GTGCCAGATTGCAGGAAATG+TGG 0.577214 tig0034029:-20489 None:intergenic
GGAGAGATACCTGAAGAAAA+CGG 0.586283 tig0034029:-14839 None:intergenic
TGATGCTAAACCCGGAGAAG+TGG 0.591064 tig0034029:+15135 Msa1452570:CDS
ACCAGTAAAGTGATAATACC+AGG 0.593840 tig0034029:-20043 None:intergenic
AAACAACAAATGGGACTGGA+CGG 0.594767 tig0034029:-14978 None:intergenic
GAAAGAAGTTACCGTCGTGA+CGG 0.597776 tig0034029:+14790 Msa1452570:five_prime_UTR
ATTATAATGTTGATGATACT+GGG 0.597876 tig0034029:+20020 Msa1452570:CDS
GATGAAGTGGAAAATGAAGA+GGG 0.598186 tig0034029:+17700 Msa1452570:intron
AGATGAAGTGGAAAATGAAG+AGG 0.599256 tig0034029:+17699 Msa1452570:intron
TGGATGCTTCTATATTAGCA+TGG 0.602625 tig0034029:+20221 Msa1452570:three_prime_UTR
GAGGAGAAGGCACAATTCAA+GGG 0.603074 tig0034029:+15232 Msa1452570:CDS
ATGCGCCTCTTCCACGTCCA+CGG 0.603927 tig0034029:-14951 None:intergenic
AAGATATTATCATCAGCAAG+AGG 0.614405 tig0034029:-20419 None:intergenic
ATGATTGTTTACTCATCCTG+TGG 0.626216 tig0034029:+20201 Msa1452570:three_prime_UTR
AAGTGGATGCTTCTATGAGA+CGG 0.631722 tig0034029:+15152 Msa1452570:CDS
GCTAATATAGAAGCATCCAC+AGG 0.644645 tig0034029:-20217 None:intergenic
AGATACCTGAAGAAAACGGT+GGG 0.646036 tig0034029:-14835 None:intergenic
TCGTCGTAAACTAAAACCTG+TGG 0.667322 tig0034029:-15550 None:intergenic
AGCTGTAATTTGGAATACGA+TGG 0.671682 tig0034029:-20091 None:intergenic
GAGATACCTGAAGAAAACGG+TGG 0.674964 tig0034029:-14836 None:intergenic
CACCACGGTGCCCGTCACGA+CGG 0.677419 tig0034029:-14801 None:intergenic
TACCGTCGTGACGGGCACCG+TGG 0.709475 tig0034029:+14799 Msa1452570:five_prime_UTR
TGGGATGAAGGTGTGCACCA+CGG 0.725067 tig0034029:-14816 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACAAAATAAAAAGAAAA+AGG - tig0034029:15785-15804 None:intergenic 10.0%
!! GTATACATAAAAATATATAA+AGG - tig0034029:16283-16302 None:intergenic 10.0%
!!! ATTAGAATTCTAATTTTAAA+GGG - tig0034029:16668-16687 None:intergenic 10.0%
!!! AATTAGAATTCTAATTTTAA+AGG - tig0034029:16669-16688 None:intergenic 10.0%
!! AAAAAGTAAAAATTATTGTT+AGG - tig0034029:16755-16774 None:intergenic 10.0%
!!! AACAATAATTTTTACTTTTT+TGG + tig0034029:16755-16774 Msa1452570:intron 10.0%
!! TTTCTAATTAATTGTAAATT+TGG - tig0034029:18385-18404 None:intergenic 10.0%
!! ACTATTTATTTACAATATAT+TGG - tig0034029:19238-19257 None:intergenic 10.0%
!! TAAATAAAAAAAAGTTACCT+CGG - tig0034029:15007-15026 None:intergenic 15.0%
!! CTAATAATTTAGACTTAAAT+TGG + tig0034029:15688-15707 Msa1452570:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - tig0034029:16028-16047 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - tig0034029:16131-16150 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - tig0034029:16155-16174 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + tig0034029:16154-16173 Msa1452570:intron 15.0%
!! TCTGTGTAAAAAAAAAATAA+AGG - tig0034029:16633-16652 None:intergenic 15.0%
!!! TTATTTTTTTTTTACACAGA+AGG + tig0034029:16633-16652 Msa1452570:intron 15.0%
!!! TTCAATTTGAAAATTTTATG+GGG - tig0034029:17856-17875 None:intergenic 15.0%
!!! CTTCAATTTGAAAATTTTAT+GGG - tig0034029:17857-17876 None:intergenic 15.0%
!!! ACTTCAATTTGAAAATTTTA+TGG - tig0034029:17858-17877 None:intergenic 15.0%
!! ATGTAATATGTTTGTAAAAT+TGG + tig0034029:19755-19774 Msa1452570:intron 15.0%
!!! AAAATTGGATTTTAGAAATA+AGG + tig0034029:19770-19789 Msa1452570:intron 15.0%
!!! AAATTGGATTTTAGAAATAA+GGG + tig0034029:19771-19790 Msa1452570:intron 15.0%
!! AATCAAATAATTTCATATAG+CGG - tig0034029:20273-20292 None:intergenic 15.0%
!! AAATAAAAAAAAGTTACCTC+GGG - tig0034029:15006-15025 None:intergenic 20.0%
!! TTACCAAATTACAATTAAAG+TGG + tig0034029:15320-15339 Msa1452570:intron 20.0%
!!! GAATGTTTTTAATGCTTATA+TGG + tig0034029:15382-15401 Msa1452570:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + tig0034029:16145-16164 Msa1452570:intron 20.0%
!! AAAATAAAGGAAAGAATTGT+AGG - tig0034029:16409-16428 None:intergenic 20.0%
!! ATCAATTAAGGAATCAAAAA+AGG - tig0034029:16468-16487 None:intergenic 20.0%
!!! AATCTGTAATTCTATTTTCT+AGG + tig0034029:16598-16617 Msa1452570:intron 20.0%
!!! ATTTAAAATGTCCATGTATT+TGG + tig0034029:16686-16705 Msa1452570:intron 20.0%
!!! TTTAAAATGTCCATGTATTT+GGG + tig0034029:16687-16706 Msa1452570:intron 20.0%
!!! TTTAATTTATCCCAAATACA+TGG - tig0034029:16700-16719 None:intergenic 20.0%
!!! TAGTATAGTTAGTATTTTAC+TGG + tig0034029:16796-16815 Msa1452570:intron 20.0%
!!! AGTATAGTTAGTATTTTACT+GGG + tig0034029:16797-16816 Msa1452570:intron 20.0%
!! AATTGAAGTTCTTAGAATAT+AGG + tig0034029:17869-17888 Msa1452570:intron 20.0%
!!! AGTTGATTTTCAATTGAATT+TGG - tig0034029:17987-18006 None:intergenic 20.0%
!! AAAGAATCAGATATAGATTA+AGG + tig0034029:18018-18037 Msa1452570:intron 20.0%
!! CTATTATGCTGAAATTAAAA+AGG - tig0034029:18813-18832 None:intergenic 20.0%
!!! ATTATAATGTTGATGATACT+GGG + tig0034029:20020-20039 Msa1452570:CDS 20.0%
!!! TAGATGAATAAGTACATTTT+GGG + tig0034029:20343-20362 Msa1452570:three_prime_UTR 20.0%
!! AAGTTAAATAAGGTAATCTT+GGG + tig0034029:20379-20398 Msa1452570:three_prime_UTR 20.0%
! TCACCACTTTAATTGTAATT+TGG - tig0034029:15326-15345 None:intergenic 25.0%
! AGTTTACGACGAATTTATTA+AGG + tig0034029:15561-15580 Msa1452570:CDS 25.0%
! AGTCTAAATTATTAGTTACC+AGG - tig0034029:15683-15702 None:intergenic 25.0%
!! AGACTTAAATTGGTAATTTC+AGG + tig0034029:15698-15717 Msa1452570:intron 25.0%
! ATAATCAATACTCAGTAGAA+TGG - tig0034029:15883-15902 None:intergenic 25.0%
! TTGATTATTCCATGTACATA+TGG + tig0034029:15895-15914 Msa1452570:intron 25.0%
! GGAAAAAGTTATTATTGCAT+TGG - tig0034029:16068-16087 None:intergenic 25.0%
! AACTCACACTTAATCAATTA+AGG - tig0034029:16480-16499 None:intergenic 25.0%
! TAATATTGTGTTACGAGATA+TGG + tig0034029:16506-16525 Msa1452570:intron 25.0%
!!! TTTTTTTTACACAGAAGGTT+TGG + tig0034029:16638-16657 Msa1452570:intron 25.0%
!!! CACCATTTTTTTGTTATTAC+AGG + tig0034029:17009-17028 Msa1452570:intron 25.0%
!!! CATTTTTTTGTTATTACAGG+CGG + tig0034029:17012-17031 Msa1452570:intron 25.0%
! CTACAAAAACTAATGATCTA+GGG - tig0034029:17201-17220 None:intergenic 25.0%
! ACTACAAAAACTAATGATCT+AGG - tig0034029:17202-17221 None:intergenic 25.0%
! AGATTTCTATCTTCTGTTAT+AGG + tig0034029:17423-17442 Msa1452570:intron 25.0%
! TAAGGGAAGGTTATATTTAT+AGG - tig0034029:17500-17519 None:intergenic 25.0%
! GCATGTATCTTAGTTATAAT+TGG + tig0034029:17534-17553 Msa1452570:intron 25.0%
!!! AACTAAAAGCCTTATTTCTT+TGG + tig0034029:17607-17626 Msa1452570:intron 25.0%
! ATATATATATACGTCCAAAC+TGG + tig0034029:17946-17965 Msa1452570:intron 25.0%
! TATAGTTCTTCATTACAGTT+TGG - tig0034029:18220-18239 None:intergenic 25.0%
!! TATGGCACTTTTAATAAACA+TGG - tig0034029:18593-18612 None:intergenic 25.0%
!!! ATGTTTATTAAAAGTGCCAT+AGG + tig0034029:18592-18611 Msa1452570:intron 25.0%
!! TTTGGTTTCTATAAAACCTA+TGG - tig0034029:18611-18630 None:intergenic 25.0%
! ATCTAGAGATTTGAATTCAT+TGG - tig0034029:18774-18793 None:intergenic 25.0%
! TCAGTTTCATTTATACAATG+TGG - tig0034029:18950-18969 None:intergenic 25.0%
! GAAGTGATAAACATAACATT+TGG - tig0034029:19326-19345 None:intergenic 25.0%
! AGAGAAATTATCTCTTATGA+TGG - tig0034029:19415-19434 None:intergenic 25.0%
! TTCAAAAATTTCAGCTATAC+AGG - tig0034029:19546-19565 None:intergenic 25.0%
! TCAAAGAATTATCAGTAGTT+TGG + tig0034029:19808-19827 Msa1452570:intron 25.0%
! CAAAGAATTATCAGTAGTTT+GGG + tig0034029:19809-19828 Msa1452570:intron 25.0%
! AAAGAATTATCAGTAGTTTG+GGG + tig0034029:19810-19829 Msa1452570:intron 25.0%
!! GTTTTCATTTTCGTATTACA+AGG + tig0034029:19942-19961 Msa1452570:intron 25.0%
!!! GATTATAATGTTGATGATAC+TGG + tig0034029:20019-20038 Msa1452570:CDS 25.0%
!! TATATTTTCATGTATTGCAG+AGG + tig0034029:20148-20167 Msa1452570:three_prime_UTR 25.0%
! TGAATTCTAAGCTATCTATA+TGG + tig0034029:20175-20194 Msa1452570:three_prime_UTR 25.0%
!! GTAGATGAATAAGTACATTT+TGG + tig0034029:20342-20361 Msa1452570:three_prime_UTR 25.0%
! GCTTATTGAGAAGTTAAATA+AGG + tig0034029:20369-20388 Msa1452570:three_prime_UTR 25.0%
! GAAGTTAAATAAGGTAATCT+TGG + tig0034029:20378-20397 Msa1452570:three_prime_UTR 25.0%
!!! GATGCAGGGTTTTTTATTTA+TGG - tig0034029:14743-14762 None:intergenic 30.0%
!! GTAATAGGAAATTAGGTTGA+CGG - tig0034029:14863-14882 None:intergenic 30.0%
AACTCACGTAATAGGAAATT+AGG - tig0034029:14870-14889 None:intergenic 30.0%
AGAATTCAAACTCACGTAAT+AGG - tig0034029:14878-14897 None:intergenic 30.0%
TATGAGACGGTTATGTAAAT+TGG + tig0034029:15165-15184 Msa1452570:CDS 30.0%
CAATGACATTGGACAAATTT+AGG + tig0034029:15346-15365 Msa1452570:intron 30.0%
! CCAGTATACTTGTTAAGTAA+GGG - tig0034029:15438-15457 None:intergenic 30.0%
! AATAATGGAATGGTCTTTGT+GGG + tig0034029:15601-15620 Msa1452570:intron 30.0%
ATATGAAATCACCTTCTTCT+GGG - tig0034029:15760-15779 None:intergenic 30.0%
GTTATTCAAATTTGAAGAGC+AGG + tig0034029:15833-15852 Msa1452570:intron 30.0%
ATAGCAAAACCATATGTACA+TGG - tig0034029:15907-15926 None:intergenic 30.0%
TAGTCTAGTCTATACTATCA+TGG + tig0034029:15929-15948 Msa1452570:intron 30.0%
AGTCTAGTCTATACTATCAT+GGG + tig0034029:15930-15949 Msa1452570:intron 30.0%
ATATTATCCATGTTATGAGG+TGG + tig0034029:15953-15972 Msa1452570:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - tig0034029:16236-16255 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + tig0034029:16237-16256 Msa1452570:intron 30.0%
TTAAGGAATCAAAAAAGGAC+TGG - tig0034029:16463-16482 None:intergenic 30.0%
AGTTAAGGAATTGAGAGATA+AGG - tig0034029:16845-16864 None:intergenic 30.0%
!! AAAAAATGGTGTTGATGTAC+AGG - tig0034029:17000-17019 None:intergenic 30.0%
CGCCTGTAATAACAAAAAAA+TGG - tig0034029:17014-17033 None:intergenic 30.0%
AAGACAATAATAAAGGGAAC+AGG - tig0034029:17040-17059 None:intergenic 30.0%
AGTGGGAAGACAATAATAAA+GGG - tig0034029:17046-17065 None:intergenic 30.0%
GCTCATACAATTAACAACAT+TGG - tig0034029:17083-17102 None:intergenic 30.0%
! TCTTGTTTGATTTACGTTGT+TGG + tig0034029:17229-17248 Msa1452570:intron 30.0%
! CTTGTTTGATTTACGTTGTT+GGG + tig0034029:17230-17249 Msa1452570:intron 30.0%
! GTTTTGTAAGTTAGTTAGCT+AGG + tig0034029:17386-17405 Msa1452570:intron 30.0%
AAGTTAGTTAGCTAGGTTTA+AGG + tig0034029:17393-17412 Msa1452570:intron 30.0%
TACGAAGAGAAAGTGATAAT+GGG - tig0034029:17469-17488 None:intergenic 30.0%
TTACGAAGAGAAAGTGATAA+TGG - tig0034029:17470-17489 None:intergenic 30.0%
ATATAACCTTCCCTTAGAAA+AGG + tig0034029:17504-17523 Msa1452570:intron 30.0%
AGTTGGATTCCAAAGAAATA+AGG - tig0034029:17619-17638 None:intergenic 30.0%
GGAAGACAGTAAAAGAAAAA+AGG + tig0034029:17654-17673 Msa1452570:intron 30.0%
AGACAGTAAAAGAAAAAAGG+AGG + tig0034029:17657-17676 Msa1452570:intron 30.0%
AAATTAACACATCATCGTAG+AGG - tig0034029:17785-17804 None:intergenic 30.0%
! TCTTTTCACAAGTACAAGAA+TGG - tig0034029:17810-17829 None:intergenic 30.0%
! ATCACTAAATTTTGCCAGTT+TGG - tig0034029:17963-17982 None:intergenic 30.0%
TTTCTTGAGGATTTGTAACA+TGG - tig0034029:18052-18071 None:intergenic 30.0%
TCAAGCTAATGTATTTCTTG+AGG - tig0034029:18065-18084 None:intergenic 30.0%
AGACATTGTCATGTTACTAT+TGG - tig0034029:18147-18166 None:intergenic 30.0%
!! GGCTTTGATTTAATTTGTGT+TGG - tig0034029:18564-18583 None:intergenic 30.0%
! TTTTAATAAACATGGTTGGC+TGG - tig0034029:18585-18604 None:intergenic 30.0%
! GCACTTTTAATAAACATGGT+TGG - tig0034029:18589-18608 None:intergenic 30.0%
TAAATTATTTCCATCCCCAA+TGG + tig0034029:18672-18691 Msa1452570:intron 30.0%
TTTCACTCAGTAAATGCTAT+CGG + tig0034029:18898-18917 Msa1452570:intron 30.0%
TACACACAGTAGAGAATTAA+AGG + tig0034029:19015-19034 Msa1452570:intron 30.0%
!!! CCACCAATTTTTTCTCAAAA+CGG - tig0034029:19152-19171 None:intergenic 30.0%
!! CCATGTTTCATATTTTGAGA+CGG - tig0034029:19194-19213 None:intergenic 30.0%
GAATGCTTATGTCATATTTG+AGG - tig0034029:19267-19286 None:intergenic 30.0%
ATGACATAAGCATTCAATAG+TGG + tig0034029:19272-19291 Msa1452570:intron 30.0%
ATGTTATGTTTATCACTTCG+AGG + tig0034029:19327-19346 Msa1452570:intron 30.0%
TGTTATGTTTATCACTTCGA+GGG + tig0034029:19328-19347 Msa1452570:intron 30.0%
TTCAGACTGTTAGTATTTCT+TGG + tig0034029:19386-19405 Msa1452570:intron 30.0%
TTCAGACTGTTAGTATTTCT+TGG + tig0034029:19386-19405 Msa1452570:intron 30.0%
AGAGAAATTGTCTCTTATGA+TGG - tig0034029:19501-19520 None:intergenic 30.0%
! TGATTTCTTTTCCTTCACAT+GGG - tig0034029:19625-19644 None:intergenic 30.0%
! ATGATTTCTTTTCCTTCACA+TGG - tig0034029:19626-19645 None:intergenic 30.0%
ATTACATTGAATGCTGAGAT+AGG - tig0034029:19742-19761 None:intergenic 30.0%
TTAGAAATAAGGGAGTAATG+TGG + tig0034029:19781-19800 Msa1452570:intron 30.0%
TAGAAATAAGGGAGTAATGT+GGG + tig0034029:19782-19801 Msa1452570:intron 30.0%
ACACTCAACAAAAAAGAAGA+GGG - tig0034029:19878-19897 None:intergenic 30.0%
AGCAATTGAATGCTTCATAT+GGG - tig0034029:19915-19934 None:intergenic 30.0%
TAGCAATTGAATGCTTCATA+TGG - tig0034029:19916-19935 None:intergenic 30.0%
AGAATTACGAAGCTGTAATT+TGG - tig0034029:20104-20123 None:intergenic 30.0%
TCTACTCAATCAACTACATA+AGG - tig0034029:20327-20346 None:intergenic 30.0%
!! ATCTTGGGTTAATTTGTACT+TGG + tig0034029:20394-20413 Msa1452570:three_prime_UTR 30.0%
!! TCTTGGGTTAATTTGTACTT+GGG + tig0034029:20395-20414 Msa1452570:three_prime_UTR 30.0%
AAGATATTATCATCAGCAAG+AGG - tig0034029:20422-20441 None:intergenic 30.0%
!! TGTTTGCTGTTTAATGCTAC+AGG + tig0034029:15099-15118 Msa1452570:intron 35.0%
TAAAGTGGTGACAATGACAT+TGG + tig0034029:15335-15354 Msa1452570:intron 35.0%
GCAGATATGTAGGACAAATA+CGG - tig0034029:15410-15429 None:intergenic 35.0%
! GTATACTTGTTAAGTAAGGG+AGG - tig0034029:15435-15454 None:intergenic 35.0%
CCCTTACTTAACAAGTATAC+TGG + tig0034029:15435-15454 Msa1452570:intron 35.0%
! GCCAGTATACTTGTTAAGTA+AGG - tig0034029:15439-15458 None:intergenic 35.0%
CGACGAATTTATTAAGGAGT+TGG + tig0034029:15567-15586 Msa1452570:CDS 35.0%
! TTTATTAAGGAGTTGGTTCC+AGG + tig0034029:15574-15593 Msa1452570:CDS 35.0%
TTGGTTCCAGGTATGAATAA+TGG + tig0034029:15586-15605 Msa1452570:intron 35.0%
! TCCAGGTATGAATAATGGAA+TGG + tig0034029:15591-15610 Msa1452570:intron 35.0%
ACCATTCCATTATTCATACC+TGG - tig0034029:15595-15614 None:intergenic 35.0%
! GAATAATGGAATGGTCTTTG+TGG + tig0034029:15600-15619 Msa1452570:intron 35.0%
GGCAATGGTTATATTTCTTG+TGG + tig0034029:15622-15641 Msa1452570:intron 35.0%
! TCTTTATGCATTTGAGTTCC+TGG + tig0034029:15662-15681 Msa1452570:intron 35.0%
CATATGAAATCACCTTCTTC+TGG - tig0034029:15761-15780 None:intergenic 35.0%
! TTGAAGAGCAGGATCTATTT+TGG + tig0034029:15844-15863 Msa1452570:intron 35.0%
GGGATATTATCCATGTTATG+AGG + tig0034029:15950-15969 Msa1452570:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - tig0034029:16002-16021 None:intergenic 35.0%
! AATTGGAGGGTACAATTGAA+AGG - tig0034029:16089-16108 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - tig0034029:16102-16121 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - tig0034029:16106-16125 None:intergenic 35.0%
TACTGATCAAGATGTTTGTG+TGG + tig0034029:16316-16335 Msa1452570:intron 35.0%
AAGGAAAGAATTGTAGGCAT+AGG - tig0034029:16403-16422 None:intergenic 35.0%
TGTGTTACGAGATATGGATA+TGG + tig0034029:16512-16531 Msa1452570:intron 35.0%
! AGTTAGTATTTTACTGGGCT+AGG + tig0034029:16802-16821 Msa1452570:intron 35.0%
! GTTAGTATTTTACTGGGCTA+GGG + tig0034029:16803-16822 Msa1452570:intron 35.0%
TAAGGAATTGAGAGATAAGG+AGG - tig0034029:16842-16861 None:intergenic 35.0%
! TGATTCTTAGATTGGTGGTT+TGG - tig0034029:16875-16894 None:intergenic 35.0%
! GATCTGGTTGATTCTTAGAT+TGG - tig0034029:16883-16902 None:intergenic 35.0%
GTATAACACCATACATGTGT+TGG - tig0034029:16916-16935 None:intergenic 35.0%
! GCTGTCGAAGTATTAAACTA+AGG - tig0034029:16951-16970 None:intergenic 35.0%
CAGTGGGAAGACAATAATAA+AGG - tig0034029:17047-17066 None:intergenic 35.0%
TGGTGATAAGTGATAACAGT+GGG - tig0034029:17063-17082 None:intergenic 35.0%
! TTGGTGATAAGTGATAACAG+TGG - tig0034029:17064-17083 None:intergenic 35.0%
ATCCTAACAATTTCCCCTAA+AGG - tig0034029:17302-17321 None:intergenic 35.0%
!! CTGTTATAGGTTTGTTGCTA+TGG + tig0034029:17436-17455 Msa1452570:intron 35.0%
!! AAAGATCCTTTTCTAAGGGA+AGG - tig0034029:17513-17532 None:intergenic 35.0%
TTCCCTTAGAAAAGGATCTT+TGG + tig0034029:17512-17531 Msa1452570:intron 35.0%
! TGCCAAAGATCCTTTTCTAA+GGG - tig0034029:17517-17536 None:intergenic 35.0%
! ATGCCAAAGATCCTTTTCTA+AGG - tig0034029:17518-17537 None:intergenic 35.0%
!! TTTCTTTGGAATCCAACTCT+TGG + tig0034029:17621-17640 Msa1452570:intron 35.0%
!! TTCTTTGGAATCCAACTCTT+GGG + tig0034029:17622-17641 Msa1452570:intron 35.0%
TGAAGAAAGTGAAGATGAAG+TGG + tig0034029:17687-17706 Msa1452570:intron 35.0%
AGATGAAGTGGAAAATGAAG+AGG + tig0034029:17699-17718 Msa1452570:intron 35.0%
GATGAAGTGGAAAATGAAGA+GGG + tig0034029:17700-17719 Msa1452570:intron 35.0%
ACCATCTTGGAAATCATCTT+CGG - tig0034029:17734-17753 None:intergenic 35.0%
CCTGATTATAATCACCATCT+TGG - tig0034029:17747-17766 None:intergenic 35.0%
CCAAGATGGTGATTATAATC+AGG + tig0034029:17744-17763 Msa1452570:CDS 35.0%
GATGGTGATTATAATCAGGT+TGG + tig0034029:17748-17767 Msa1452570:intron 35.0%
ATGAGTTCCACAACTACATA+AGG + tig0034029:18421-18440 Msa1452570:intron 35.0%
TAGACTTCCTTATGTAGTTG+TGG - tig0034029:18431-18450 None:intergenic 35.0%
AAGAAAACATGAGTCAGACT+AGG + tig0034029:18512-18531 Msa1452570:intron 35.0%
! ATTTTCATGTGACATGCACA+TGG - tig0034029:18634-18653 None:intergenic 35.0%
TCTCTAGATTGCAACTTTGA+AGG + tig0034029:18785-18804 Msa1452570:intron 35.0%
! GGTAGAGCTTGAAATTTGTT+AGG - tig0034029:18848-18867 None:intergenic 35.0%
TTACTGAGTGAAATTTGAGC+AGG - tig0034029:18891-18910 None:intergenic 35.0%
AATTCTCTACTGTGTGTACA+GGG - tig0034029:19013-19032 None:intergenic 35.0%
TAATTCTCTACTGTGTGTAC+AGG - tig0034029:19014-19033 None:intergenic 35.0%
ACAGTAGAGAATTAAAGGAG+TGG + tig0034029:19020-19039 Msa1452570:intron 35.0%
!! TTTTGATTCAGAGAACCCAA+TGG - tig0034029:19054-19073 None:intergenic 35.0%
GTACTTGCGACATATTGTTT+GGG - tig0034029:19097-19116 None:intergenic 35.0%
!! AGTTTTAGCAAAACCACAGT+TGG + tig0034029:19125-19144 Msa1452570:intron 35.0%
!!! GGTCCGTTTTGAGAAAAAAT+TGG + tig0034029:19146-19165 Msa1452570:intron 35.0%
!!! CCGTTTTGAGAAAAAATTGG+TGG + tig0034029:19149-19168 Msa1452570:intron 35.0%
CCGTCTCAAAATATGAAACA+TGG + tig0034029:19191-19210 Msa1452570:intron 35.0%
ATATGAAACATGGTCCTCTA+CGG + tig0034029:19201-19220 Msa1452570:intron 35.0%
AATAGTGGCATGAAAGTAGA+CGG + tig0034029:19287-19306 Msa1452570:intron 35.0%
AGCGTAGACTATATTACACT+TGG + tig0034029:19664-19683 Msa1452570:intron 35.0%
AGAAATAAGGGAGTAATGTG+GGG + tig0034029:19783-19802 Msa1452570:intron 35.0%
CACACTCAACAAAAAAGAAG+AGG - tig0034029:19879-19898 None:intergenic 35.0%
ACCAGTAAAGTGATAATACC+AGG - tig0034029:20046-20065 None:intergenic 35.0%
! AGCTGTAATTTGGAATACGA+TGG - tig0034029:20094-20113 None:intergenic 35.0%
ATGATTGTTTACTCATCCTG+TGG + tig0034029:20201-20220 Msa1452570:three_prime_UTR 35.0%
TGGATGCTTCTATATTAGCA+TGG + tig0034029:20221-20240 Msa1452570:three_prime_UTR 35.0%
! ATTGCTTCAAGGCTTTTACT+TGG + tig0034029:20247-20266 Msa1452570:three_prime_UTR 35.0%
CTTATTTCATCATGCATCCT+AGG + tig0034029:20439-20458 Msa1452570:three_prime_UTR 35.0%
AGATACCTGAAGAAAACGGT+GGG - tig0034029:14838-14857 None:intergenic 40.0%
GGAGAGATACCTGAAGAAAA+CGG - tig0034029:14842-14861 None:intergenic 40.0%
TCGAATTTCAGCGTCGTAAA+TGG + tig0034029:14903-14922 Msa1452570:intron 40.0%
AAACAACAAATGGGACTGGA+CGG - tig0034029:14981-15000 None:intergenic 40.0%
GGAAAAACAACAAATGGGAC+TGG - tig0034029:14985-15004 None:intergenic 40.0%
CCTCGGGAAAAACAACAAAT+GGG - tig0034029:14990-15009 None:intergenic 40.0%
ACCTCGGGAAAAACAACAAA+TGG - tig0034029:14991-15010 None:intergenic 40.0%
AAACAGATACCGACACATGT+CGG - tig0034029:15084-15103 None:intergenic 40.0%
AATTTGCCTGATGCTAAACC+CGG + tig0034029:15127-15146 Msa1452570:CDS 40.0%
AAGTGGATGCTTCTATGAGA+CGG + tig0034029:15152-15171 Msa1452570:CDS 40.0%
! CAGATCTGCTCCTTATTTCT+TGG + tig0034029:15210-15229 Msa1452570:CDS 40.0%
! ATCTGCTCCTTATTTCTTGG+AGG + tig0034029:15213-15232 Msa1452570:CDS 40.0%
! TCCTTATTTCTTGGAGGAGA+AGG + tig0034029:15219-15238 Msa1452570:CDS 40.0%
! TACTTGTTAAGTAAGGGAGG+AGG - tig0034029:15432-15451 None:intergenic 40.0%
! CTTTTCCTGCTTAACTGTCA+GGG + tig0034029:15458-15477 Msa1452570:intron 40.0%
TCGTCGTAAACTAAAACCTG+TGG - tig0034029:15553-15572 None:intergenic 40.0%
!!! GGTTCCATGTACGTTTTTTC+CGG - tig0034029:15739-15758 None:intergenic 40.0%
TCAATACTCAGTAGAATGGC+AGG - tig0034029:15879-15898 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - tig0034029:16241-16260 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - tig0034029:16103-16122 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + tig0034029:16241-16260 Msa1452570:intron 40.0%
TGAAACGGAGGGAGTAATAA+AGG + tig0034029:16252-16271 Msa1452570:intron 40.0%
GAATTCTTTCAGCTCCTGTA+CGG + tig0034029:16550-16569 Msa1452570:intron 40.0%
AATTCTTTCAGCTCCTGTAC+GGG + tig0034029:16551-16570 Msa1452570:intron 40.0%
! TGGTTTGGATGGAGAAGTTA+AGG - tig0034029:16860-16879 None:intergenic 40.0%
! TCTTAGATTGGTGGTTTGGA+TGG - tig0034029:16871-16890 None:intergenic 40.0%
! CTGGTTGATTCTTAGATTGG+TGG - tig0034029:16880-16899 None:intergenic 40.0%
!! AAATGGTGTTGATGTACAGG+CGG - tig0034029:16997-17016 None:intergenic 40.0%
GTTTACTGTTCTAGCAGAGA+TGG - tig0034029:17162-17181 None:intergenic 40.0%
! TGGGTTACCTACATTTTGTC+CGG + tig0034029:17249-17268 Msa1452570:intron 40.0%
GATTTCACCGGACAAAATGT+AGG - tig0034029:17259-17278 None:intergenic 40.0%
TGACGATTCTTCCACCTTTA+GGG + tig0034029:17285-17304 Msa1452570:intron 40.0%
CTAACAATTTCCCCTAAAGG+TGG - tig0034029:17299-17318 None:intergenic 40.0%
! CACCTTTAGGGGAAATTGTT+AGG + tig0034029:17297-17316 Msa1452570:intron 40.0%
TCCGAAGATGATTTCCAAGA+TGG + tig0034029:17730-17749 Msa1452570:CDS 40.0%
! TTTTCTGCTTCACTGTGATC+AGG - tig0034029:18289-18308 None:intergenic 40.0%
TGTAGTTGTGGAACTCATGT+GGG - tig0034029:18419-18438 None:intergenic 40.0%
ATGTAGTTGTGGAACTCATG+TGG - tig0034029:18420-18439 None:intergenic 40.0%
! GGGATAACTCAATCTTTTCC+AGG - tig0034029:19077-19096 None:intergenic 40.0%
CGTACTTGCGACATATTGTT+TGG - tig0034029:19098-19117 None:intergenic 40.0%
ATAGTGGCATGAAAGTAGAC+GGG + tig0034029:19288-19307 Msa1452570:intron 40.0%
GTAGTTTGGGGACATGATAT+AGG + tig0034029:19822-19841 Msa1452570:intron 40.0%
GCCTGGTATTATCACTTTAC+TGG + tig0034029:20042-20061 Msa1452570:CDS 40.0%
GTATTACGTAGCAGTTAAGC+TGG - tig0034029:20127-20146 None:intergenic 40.0%
!! GCTAATATAGAAGCATCCAC+AGG - tig0034029:20220-20239 None:intergenic 40.0%
! TAGCATGGACTATTGCTTCA+AGG + tig0034029:20236-20255 Msa1452570:three_prime_UTR 40.0%
TCATCATGCATCCTAGGAAT+TGG + tig0034029:20445-20464 Msa1452570:three_prime_UTR 40.0%
CATCATGCATCCTAGGAATT+GGG + tig0034029:20446-20465 Msa1452570:three_prime_UTR 40.0%
AGAAACCAAACCCAATTCCT+AGG - tig0034029:20459-20478 None:intergenic 40.0%
TTTCCACATTTCCTGCAATC+TGG + tig0034029:20486-20505 Msa1452570:three_prime_UTR 40.0%
GAAAGAAGTTACCGTCGTGA+CGG + tig0034029:14790-14809 Msa1452570:five_prime_UTR 45.0%
AAAGAAGTTACCGTCGTGAC+GGG + tig0034029:14791-14810 Msa1452570:five_prime_UTR 45.0%
TGAAGAAAACGGTGGGATGA+AGG - tig0034029:14831-14850 None:intergenic 45.0%
! TTCATCCCACCGTTTTCTTC+AGG + tig0034029:14830-14849 Msa1452570:five_prime_UTR 45.0%
GAGATACCTGAAGAAAACGG+TGG - tig0034029:14839-14858 None:intergenic 45.0%
ATTTCAGCGTCGTAAATGGC+TGG + tig0034029:14907-14926 Msa1452570:intron 45.0%
!!! CCCATTTGTTGTTTTTCCCG+AGG + tig0034029:14987-15006 Msa1452570:CDS 45.0%
!! ATAGAAGCATCCACTTCTCC+GGG - tig0034029:15148-15167 None:intergenic 45.0%
!! CATAGAAGCATCCACTTCTC+CGG - tig0034029:15149-15168 None:intergenic 45.0%
GCCTTCTCCTCCAAGAAATA+AGG - tig0034029:15223-15242 None:intergenic 45.0%
! GAGGAGAAGGCACAATTCAA+GGG + tig0034029:15232-15251 Msa1452570:CDS 45.0%
! GAAGGCACAATTCAAGGGTA+TGG + tig0034029:15237-15256 Msa1452570:intron 45.0%
! GCTTTTCCTGCTTAACTGTC+AGG + tig0034029:15457-15476 Msa1452570:intron 45.0%
CAGAGAATCACGAGTAAAGC+TGG - tig0034029:15530-15549 None:intergenic 45.0%
CAGGTAAAACTATGCTGAGC+CGG + tig0034029:15717-15736 Msa1452570:intron 45.0%
TGAGCCGGAAAAAACGTACA+TGG + tig0034029:15732-15751 Msa1452570:CDS 45.0%
CAGAGATCCACCTCATAACA+TGG - tig0034029:15963-15982 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - tig0034029:16240-16259 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + tig0034029:16240-16259 Msa1452570:intron 45.0%
GATCAAGATGTTTGTGTGGC+AGG + tig0034029:16320-16339 Msa1452570:intron 45.0%
TGTGGCAGGTCAGAAAAAAC+TGG + tig0034029:16334-16353 Msa1452570:intron 45.0%
TGATATAGAGAAGAGTCGCC+TGG + tig0034029:16370-16389 Msa1452570:intron 45.0%
GGAATTGAGAGATAAGGAGG+AGG - tig0034029:16839-16858 None:intergenic 45.0%
AATCAACCAGATCCAGTCTC+TGG + tig0034029:16890-16909 Msa1452570:intron 45.0%
TCGTCAGCAAAGGATTTCAC+CGG - tig0034029:17271-17290 None:intergenic 45.0%
CTGACGATTCTTCCACCTTT+AGG + tig0034029:17284-17303 Msa1452570:intron 45.0%
GACGATTCTTCCACCTTTAG+GGG + tig0034029:17286-17305 Msa1452570:intron 45.0%
CATCATCGTAGAGGATAGAG+TGG - tig0034029:17776-17795 None:intergenic 45.0%
CATGTGACATGCACATGGTT+TGG - tig0034029:18629-18648 None:intergenic 45.0%
GCGCTGTTCATGCTACAAAA+TGG + tig0034029:18694-18713 Msa1452570:intron 45.0%
GTAGAGCTTGAAACTTGAGC+AGG - tig0034029:18869-18888 None:intergenic 45.0%
TGATTCAGAGAACCCAATGG+AGG - tig0034029:19051-19070 None:intergenic 45.0%
GGGTTCTCTGAATCAAAACC+TGG + tig0034029:19056-19075 Msa1452570:intron 45.0%
TTCTCAAAACGGACCAACTG+TGG - tig0034029:19141-19160 None:intergenic 45.0%
TGGTCTATAGTCATCCGTAG+AGG - tig0034029:19218-19237 None:intergenic 45.0%
TAGTGGCATGAAAGTAGACG+GGG + tig0034029:19289-19308 Msa1452570:intron 45.0%
CATACTACTTGCCCATGTGA+AGG + tig0034029:19611-19630 Msa1452570:intron 45.0%
!! AATGTTGATGATACTGGGCC+TGG + tig0034029:20025-20044 Msa1452570:CDS 45.0%
TGCATCCTAGGAATTGGGTT+TGG + tig0034029:20451-20470 Msa1452570:three_prime_UTR 45.0%
!! AACAAAAATTAAAAAAATAA+AGG - tig0034029:16422-16441 None:intergenic 5.0%
!! ATTATAAAATAAATGTAAAT+TGG + tig0034029:17320-17339 Msa1452570:intron 5.0%
ACCTTGTAGACTCTCGTGTC+TGG + tig0034029:15055-15074 Msa1452570:intron 50.0%
ACCAGACACGAGAGTCTACA+AGG - tig0034029:15059-15078 None:intergenic 50.0%
ACTTCTCCGGGTTTAGCATC+AGG - tig0034029:15136-15155 None:intergenic 50.0%
TGATGCTAAACCCGGAGAAG+TGG + tig0034029:15135-15154 Msa1452570:CDS 50.0%
! GGAGGAGAAGGCACAATTCA+AGG + tig0034029:15231-15250 Msa1452570:CDS 50.0%
AAGGGAGGAGGCAGATATGT+AGG - tig0034029:15420-15439 None:intergenic 50.0%
TACTCGTGATTCTCTGCCAC+AGG + tig0034029:15534-15553 Msa1452570:CDS 50.0%
GGAATGGTCTTTGTGGGCAA+TGG + tig0034029:15607-15626 Msa1452570:intron 50.0%
CGTACATGGAACCCAGAAGA+AGG + tig0034029:15746-15765 Msa1452570:CDS 50.0%
GGCAGGTCAGAAAAAACTGG+CGG + tig0034029:16337-16356 Msa1452570:intron 50.0%
TCTAATCCCAAGTCCCGTAC+AGG - tig0034029:16567-16586 None:intergenic 50.0%
! TACATGTGTTGGCCAGAGAC+TGG - tig0034029:16905-16924 None:intergenic 50.0%
GTCTCTGGCCAACACATGTA+TGG + tig0034029:16905-16924 Msa1452570:intron 50.0%
GGTGGAAGAATCGTCAGCAA+AGG - tig0034029:17281-17300 None:intergenic 50.0%
CCTGTTACGAACCCAAGAGT+TGG - tig0034029:17636-17655 None:intergenic 50.0%
CCAACTCTTGGGTTCGTAAC+AGG + tig0034029:17633-17652 Msa1452570:intron 50.0%
TAGCATGAACAGCGCCATTG+GGG - tig0034029:18689-18708 None:intergenic 50.0%
GTAGCATGAACAGCGCCATT+GGG - tig0034029:18690-18709 None:intergenic 50.0%
TGTAGCATGAACAGCGCCAT+TGG - tig0034029:18691-18710 None:intergenic 50.0%
AGGAGTGGAGAAACCTCCAT+TGG + tig0034029:19035-19054 Msa1452570:intron 50.0%
GGAGTGGAGAAACCTCCATT+GGG + tig0034029:19036-19055 Msa1452570:intron 50.0%
GTGCCAGATTGCAGGAAATG+TGG - tig0034029:20492-20511 None:intergenic 50.0%
TCCTGCAATCTGGCACTACT+TGG + tig0034029:20496-20515 Msa1452570:three_prime_UTR 50.0%
ACCAAGTAGTGCCAGATTGC+AGG - tig0034029:20500-20519 None:intergenic 50.0%
! TGGGATGAAGGTGTGCACCA+CGG - tig0034029:14819-14838 None:intergenic 55.0%
TCGTAAATGGCTGGCAGAGG+AGG + tig0034029:14916-14935 Msa1452570:exon 55.0%
TAAATGGCTGGCAGAGGAGG+AGG + tig0034029:14919-14938 Msa1452570:exon 55.0%
GTCTGGTGTCCGACATGTGT+CGG + tig0034029:15072-15091 Msa1452570:intron 55.0%
TTGCGCCCTGACAGTTAAGC+AGG - tig0034029:15466-15485 None:intergenic 55.0%
GTAGGCATAGGTGCTCTACC+AGG - tig0034029:16391-16410 None:intergenic 55.0%
TTCAGCTCCTGTACGGGACT+TGG + tig0034029:16557-16576 Msa1452570:intron 55.0%
TCAGCTCCTGTACGGGACTT+GGG + tig0034029:16558-16577 Msa1452570:intron 55.0%
TGTTGGCCAGAGACTGGATC+TGG - tig0034029:16899-16918 None:intergenic 55.0%
TGTCAATCGTAGCGTCGTGC+TGG - tig0034029:17117-17136 None:intergenic 55.0%
ATGAACAGCGCCATTGGGGA+TGG - tig0034029:18685-18704 None:intergenic 55.0%
!! GCTTGCGGGTTAGGGATGCA+GGG - tig0034029:14757-14776 None:intergenic 60.0%
TCTGCTTGCGCTTGCGCTTG+CGG - tig0034029:14772-14791 None:intergenic 60.0%
GCGTCGTAAATGGCTGGCAG+AGG + tig0034029:14913-14932 Msa1452570:intron 60.0%
GGATTCCGTGGACGTGGAAG+AGG + tig0034029:14946-14965 Msa1452570:CDS 60.0%
ATGCGCCTCTTCCACGTCCA+CGG - tig0034029:14954-14973 None:intergenic 60.0%
TGACAGCAGAGGTGGACAGG+TGG - tig0034029:16973-16992 None:intergenic 60.0%
GGTTGACAGCAGAGGTGGAC+AGG - tig0034029:16976-16995 None:intergenic 60.0%
GTACAGGCGGTTGACAGCAG+AGG - tig0034029:16984-17003 None:intergenic 60.0%
CAATCGTAGCGTCGTGCTGG+TGG - tig0034029:17114-17133 None:intergenic 60.0%
!! CGCTTGCGGGTTAGGGATGC+AGG - tig0034029:14758-14777 None:intergenic 65.0%
! GCGCTTGCGCTTGCGGGTTA+GGG - tig0034029:14765-14784 None:intergenic 65.0%
TGCGCTTGCGCTTGCGGGTT+AGG - tig0034029:14766-14785 None:intergenic 65.0%
CTGCTTGCGCTTGCGCTTGC+GGG - tig0034029:14771-14790 None:intergenic 65.0%
TGGCTGGCAGAGGAGGAGGA+TGG + tig0034029:14923-14942 Msa1452570:CDS 65.0%
GGCTGGCAGAGGAGGAGGAT+GGG + tig0034029:14924-14943 Msa1452570:CDS 65.0%
GCTGGCAGAGGAGGAGGATG+GGG + tig0034029:14925-14944 Msa1452570:CDS 65.0%
GGAGGAGGATGGGGATTCCG+TGG + tig0034029:14934-14953 Msa1452570:CDS 65.0%
GGATGGGGATTCCGTGGACG+TGG + tig0034029:14940-14959 Msa1452570:CDS 65.0%
CAGGCGGTTGACAGCAGAGG+TGG - tig0034029:16981-17000 None:intergenic 65.0%
! TAGCGTCGTGCTGGTGGCAG+TGG - tig0034029:17108-17127 None:intergenic 65.0%
!! TACCGTCGTGACGGGCACCG+TGG + tig0034029:14799-14818 Msa1452570:five_prime_UTR 70.0%
CACCACGGTGCCCGTCACGA+CGG - tig0034029:14804-14823 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0034029 gene 14733 20552 14733 ID=Msa1452570;Name=Msa1452570
tig0034029 mRNA 14733 20552 14733 ID=Msa1452570-mRNA-1;Parent=Msa1452570;Name=Msa1452570-mRNA-1;_AED=0.11;_eAED=0.11;_QI=127|0.83|0.85|1|0.83|0.71|7|420|194
tig0034029 exon 14733 14851 14733 ID=Msa1452570-mRNA-1:exon:18676;Parent=Msa1452570-mRNA-1
tig0034029 exon 14914 15008 14914 ID=Msa1452570-mRNA-1:exon:18677;Parent=Msa1452570-mRNA-1
tig0034029 exon 15121 15253 15121 ID=Msa1452570-mRNA-1:exon:18678;Parent=Msa1452570-mRNA-1
tig0034029 exon 15479 15595 15479 ID=Msa1452570-mRNA-1:exon:18679;Parent=Msa1452570-mRNA-1
tig0034029 exon 15720 15767 15720 ID=Msa1452570-mRNA-1:exon:18680;Parent=Msa1452570-mRNA-1
tig0034029 exon 17707 17765 17707 ID=Msa1452570-mRNA-1:exon:18681;Parent=Msa1452570-mRNA-1
tig0034029 exon 19992 20552 19992 ID=Msa1452570-mRNA-1:exon:18682;Parent=Msa1452570-mRNA-1
tig0034029 five_prime_UTR 14733 14851 14733 ID=Msa1452570-mRNA-1:five_prime_utr;Parent=Msa1452570-mRNA-1
tig0034029 five_prime_UTR 14914 14921 14914 ID=Msa1452570-mRNA-1:five_prime_utr;Parent=Msa1452570-mRNA-1
tig0034029 CDS 14922 15008 14922 ID=Msa1452570-mRNA-1:cds;Parent=Msa1452570-mRNA-1
tig0034029 CDS 15121 15253 15121 ID=Msa1452570-mRNA-1:cds;Parent=Msa1452570-mRNA-1
tig0034029 CDS 15479 15595 15479 ID=Msa1452570-mRNA-1:cds;Parent=Msa1452570-mRNA-1
tig0034029 CDS 15720 15767 15720 ID=Msa1452570-mRNA-1:cds;Parent=Msa1452570-mRNA-1
tig0034029 CDS 17707 17765 17707 ID=Msa1452570-mRNA-1:cds;Parent=Msa1452570-mRNA-1
tig0034029 CDS 19992 20132 19992 ID=Msa1452570-mRNA-1:cds;Parent=Msa1452570-mRNA-1
tig0034029 three_prime_UTR 20133 20552 20133 ID=Msa1452570-mRNA-1:three_prime_utr;Parent=Msa1452570-mRNA-1
Gene Sequence

>Msa1452570

ATGGCTGGCAGAGGAGGAGGATGGGGATTCCGTGGACGTGGAAGAGGCGCATATGTCCGTCCAGTCCCATTTGTTGTTTTTCCCGAGGATATTAATTTGCCTGATGCTAAACCCGGAGAAGTGGATGCTTCTATGAGACGGTTATGTAAATTGGATCATGAGTTTGATAATTTTTTCAGATCTGCTCCTTATTTCTTGGAGGAGAAGGCACAATTCAAGGGGCGCAAAAGAAAGATGCACGTACAAAGATTCTCTGACAAGAAGAAGACCAGCTTTACTCGTGATTCTCTGCCACAGGTTTTAGTTTACGACGAATTTATTAAGGAGTTGGTTCCAGGTAAAACTATGCTGAGCCGGAAAAAACGTACATGGAACCCAGAAGAAGTGGAAAATGAAGAGGGTAACGAGTCCGAAGATGATTTCCAAGATGGTGATTATAATCAGAATGAGTACTTTGACGACGATGAAGACGATTATAATGTTGATGATACTGGGCCTGGTATTATCACTTTACTGGTTCAACGCATTTTTTCATTCATTTTGCCATCGTATTCCAAATTACAGCTTCGTAATTCTCCAGCTTAA
Protein sequence

>Msa1452570

MAGRGGGWGFRGRGRGAYVRPVPFVVFPEDINLPDAKPGEVDASMRRLCKLDHEFDNFFRSAPYFLEEKAQFKGRKRKMHVQRFSDKKKTSFTRDSLPQVLVYDEFIKELVPGKTMLSRKKRTWNPEEVENEEGNESEDDFQDGDYNQNEYFDDDEDDYNVDDTGPGIITLLVQRIFSFILPSYSKLQLRNSPA*