AlfalfaGEDB | MS.gene54347

M. sativa cultivar XinJiangDaYe / MS.gene54347

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54347.t1	XP_013447781.1	87.9	165	17	1	1	165	1	162	1.90E-77	298.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54347.t1	Q9SGU2	47.9	71	37	0	60	130	28	98	1.1e-12	74.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54347.t1	I3T7S1	87.9	165	17	1	1	165	1	162	1.4e-77	298.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene54347	-0.817635	2.98E-52	-1.69E-46
MS.gene049171	MS.gene54347	-0.808394	3.16E-50	-1.69E-46
MS.gene049217	MS.gene54347	-0.821834	3.27E-53	-1.69E-46
MS.gene049222	MS.gene54347	-0.829837	4.12E-55	-1.69E-46
MS.gene049232	MS.gene54347	-0.802304	5.98E-49	-1.69E-46
MS.gene049265	MS.gene54347	0.814473	1.51E-51	-1.69E-46
MS.gene04932	MS.gene54347	0.801312	9.55E-49	-1.69E-46
MS.gene049549	MS.gene54347	0.81953	1.11E-52	-1.69E-46
MS.gene049609	MS.gene54347	-0.813422	2.58E-51	-1.69E-46
MS.gene049611	MS.gene54347	0.839738	1.32E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54347.t1	MTR_7g405740	95.152	165	5	1	1	165	1	162	8.84e-116	325
MS.gene54347.t1	MTR_3g098970	49.612	129	54	4	7	135	1	118	1.31e-31	111
MS.gene54347.t1	MTR_8g096440	41.406	128	59	3	24	144	5	123	2.10e-26	97.8
MS.gene54347.t1	MTR_8g096500	53.165	79	33	1	70	144	49	127	6.47e-24	91.7
MS.gene54347.t1	MTR_8g096470	53.125	64	30	0	71	134	47	110	1.34e-20	82.0
MS.gene54347.t1	MTR_4g072160	53.125	64	30	0	70	133	37	100	1.29e-17	75.1
MS.gene54347.t1	MTR_2g066830	43.478	92	39	1	39	130	40	118	8.78e-17	72.8
MS.gene54347.t1	MTR_3g092220	42.169	83	46	1	56	136	19	101	1.51e-16	71.6
MS.gene54347.t1	MTR_4g124750	45.455	66	36	0	70	135	69	134	1.54e-16	72.8
MS.gene54347.t1	MTR_8g461210	50.769	65	32	0	66	130	31	95	2.80e-16	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54347.t1	AT5G50760	44.828	116	61	2	19	133	5	118	2.05e-23	91.3
MS.gene54347.t1	AT1G56150	47.887	71	37	0	60	130	28	98	4.67e-18	75.5
MS.gene54347.t1	AT5G20810	46.970	66	35	0	70	135	79	144	2.75e-17	74.7
MS.gene54347.t1	AT5G20810	46.970	66	35	0	70	135	79	144	4.02e-17	75.1
MS.gene54347.t1	AT3G43120	45.455	66	36	0	70	135	79	144	8.02e-17	73.6
MS.gene54347.t1	AT3G12830	44.048	84	44	2	49	130	28	110	3.38e-16	71.2
MS.gene54347.t1	AT2G46690	45.833	72	36	1	68	136	22	93	1.35e-15	69.3
MS.gene54347.t1	AT3G61900	41.379	87	39	2	68	142	28	114	1.72e-15	69.3
MS.gene54347.t1	AT1G16510	46.970	66	35	0	65	130	49	114	4.15e-15	68.9
MS.gene54347.t1	AT4G00880	40.964	83	45	2	56	136	16	96	1.10e-14	67.0

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Find 40 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGACCAAAAGTACAACCT+TGG	0.538821	7.4:+93980975	None:intergenic
AAGAACATGAAGCAAGGAAA+AGG	0.428717	7.4:-93981379	MS.gene54347:CDS
AAGGAAGAGCCAAAGGTCCT+TGG	0.517712	7.4:+93981053	None:intergenic
AAGTCCATAGGAGGAGGAGG+AGG	0.549753	7.4:-93981313	MS.gene54347:CDS
AATCATGGCCTAGTCTTCCG+CGG	0.600149	7.4:-93981234	MS.gene54347:CDS
ACAAAAGAAAGTGGCCCCGG+AGG	0.644682	7.4:-93981197	MS.gene54347:CDS
ACATTACAAGGAAGAGCCAA+AGG	0.626356	7.4:+93981046	None:intergenic
ACCACAAACCTTTGCATTTG+AGG	0.340829	7.4:+93981151	None:intergenic
ACCTCAAATGCAAAGGTTTG+TGG	0.451149	7.4:-93981152	MS.gene54347:CDS
ACGACCAAAAGTACAACCTT+GGG	0.533998	7.4:+93980976	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAACATGAAGCAAGGAAA+AGG	-	chr7.4:93980928-93980947	MS.gene54347:CDS	35.0%
AGAACATGAAGCAAGGAAAA+GGG	-	chr7.4:93980929-93980948	MS.gene54347:CDS	35.0%
GAAGAAGCTGAATCAGAATA+TGG	-	chr7.4:93981222-93981241	MS.gene54347:CDS	35.0%
GGAAAAGGGAACAAGAAAAT+AGG	-	chr7.4:93980943-93980962	MS.gene54347:CDS	35.0%
TCAAGCAACATCTTGAACAA+AGG	+	chr7.4:93981204-93981223	None:intergenic	35.0%
TTAAGACAATCATCCTGGAA+GGG	+	chr7.4:93981383-93981402	None:intergenic	35.0%
ACATTACAAGGAAGAGCCAA+AGG	+	chr7.4:93981264-93981283	None:intergenic	40.0%
ACCACAAACCTTTGCATTTG+AGG	+	chr7.4:93981159-93981178	None:intergenic	40.0%
ACCTCAAATGCAAAGGTTTG+TGG	-	chr7.4:93981155-93981174	MS.gene54347:CDS	40.0%
AGGCCTCATAACAAAAACGT+GGG	-	chr7.4:93980963-93980982	MS.gene54347:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	93980916	93981413	93980916	ID=MS.gene54347
chr7.4	mRNA	93980916	93981413	93980916	ID=MS.gene54347.t1;Parent=MS.gene54347
chr7.4	exon	93980916	93981413	93980916	ID=MS.gene54347.t1.exon1;Parent=MS.gene54347.t1
chr7.4	CDS	93980916	93981413	93980916	ID=cds.MS.gene54347.t1;Parent=MS.gene54347.t1

Gene Sequence

>MS.gene54347

ATGGATATTGGCAAGAACATGAAGCAAGGAAAAGGGAACAAGAAAATAGGCCTCATAACAAAAACGTGGGAGAGATGCAAGTCCATAGGAGGAGGAGGAGGAGGACACAAGAGTAAATCATATTCATCATCAGTGATTCCAACGACAAGAAGGAGCAAATCATGGCCTAGTCTTCCGCGGGGCGAAGAAAATAGACAAAAGAAAGTGGCCCCGGAGGGATGTTTTTCGGTGTACGTTGGACCTCAAATGCAAAGGTTTGTGGTCAAAACTGAGTATGCTAATCATCCTTTGTTCAAGATGTTGCTTGAAGAAGCTGAATCAGAATATGGTTATAGCTGCCAAGGACCTTTGGCTCTTCCTTGTAATGTTGATGTCTTTTACAAAGTGTTGATGGAAATGGATAACGAAGCTCCTTCCCAAGGTTGTACTTTTGGTCGTTCTCGTTCTTCTTATCATCTTCTTAGCCCTTCCAGGATGATTGTCTTAAACAACTTCTAA

Protein sequence

>MS.gene54347.t1

MDIGKNMKQGKGNKKIGLITKTWERCKSIGGGGGGHKSKSYSSSVIPTTRRSKSWPSLPRGEENRQKKVAPEGCFSVYVGPQMQRFVVKTEYANHPLFKMLLEEAESEYGYSCQGPLALPCNVDVFYKVLMEMDNEAPSQGCTFGRSRSSYHLLSPSRMIVLNNF