Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54347.t1 | XP_013447781.1 | 87.9 | 165 | 17 | 1 | 1 | 165 | 1 | 162 | 1.90E-77 | 298.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54347.t1 | Q9SGU2 | 47.9 | 71 | 37 | 0 | 60 | 130 | 28 | 98 | 1.1e-12 | 74.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54347.t1 | I3T7S1 | 87.9 | 165 | 17 | 1 | 1 | 165 | 1 | 162 | 1.4e-77 | 298.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene54347 | -0.817635 | 2.98E-52 | -1.69E-46 |
| MS.gene049171 | MS.gene54347 | -0.808394 | 3.16E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene54347 | -0.821834 | 3.27E-53 | -1.69E-46 |
| MS.gene049222 | MS.gene54347 | -0.829837 | 4.12E-55 | -1.69E-46 |
| MS.gene049232 | MS.gene54347 | -0.802304 | 5.98E-49 | -1.69E-46 |
| MS.gene049265 | MS.gene54347 | 0.814473 | 1.51E-51 | -1.69E-46 |
| MS.gene04932 | MS.gene54347 | 0.801312 | 9.55E-49 | -1.69E-46 |
| MS.gene049549 | MS.gene54347 | 0.81953 | 1.11E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene54347 | -0.813422 | 2.58E-51 | -1.69E-46 |
| MS.gene049611 | MS.gene54347 | 0.839738 | 1.32E-57 | -1.69E-46 |
| MS.gene049634 | MS.gene54347 | 0.805922 | 1.06E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene54347 | -0.813952 | 1.97E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene54347 | -0.802068 | 6.68E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene54347 | 0.838539 | 2.71E-57 | -1.69E-46 |
| MS.gene050381 | MS.gene54347 | 0.828388 | 9.24E-55 | -1.69E-46 |
| MS.gene050444 | MS.gene54347 | -0.812208 | 4.76E-51 | -1.69E-46 |
| MS.gene050499 | MS.gene54347 | -0.800791 | 1.22E-48 | -1.69E-46 |
| MS.gene050504 | MS.gene54347 | -0.808717 | 2.70E-50 | -1.69E-46 |
| MS.gene050538 | MS.gene54347 | -0.811563 | 6.58E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene54347 | -0.80861 | 2.85E-50 | -1.69E-46 |
| MS.gene050647 | MS.gene54347 | 0.824555 | 7.58E-54 | -1.69E-46 |
| MS.gene050675 | MS.gene54347 | -0.805025 | 1.63E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene54347 | -0.812713 | 3.69E-51 | -1.69E-46 |
| MS.gene050772 | MS.gene54347 | -0.815855 | 7.47E-52 | -1.69E-46 |
| MS.gene050809 | MS.gene54347 | 0.824501 | 7.80E-54 | -1.69E-46 |
| MS.gene05080 | MS.gene54347 | -0.800858 | 1.18E-48 | -1.69E-46 |
| MS.gene05081 | MS.gene54347 | -0.809682 | 1.68E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene54347 | -0.832187 | 1.09E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene54347 | -0.830936 | 2.22E-55 | -1.69E-46 |
| MS.gene050950 | MS.gene54347 | -0.811371 | 7.24E-51 | -1.69E-46 |
| MS.gene05104 | MS.gene54347 | 0.818927 | 1.52E-52 | -1.69E-46 |
| MS.gene051138 | MS.gene54347 | 0.805169 | 1.52E-49 | -1.69E-46 |
| MS.gene051366 | MS.gene54347 | 0.805195 | 1.50E-49 | -1.69E-46 |
| MS.gene051632 | MS.gene54347 | 0.849889 | 2.42E-60 | -1.69E-46 |
| MS.gene051666 | MS.gene54347 | -0.82865 | 7.99E-55 | -1.69E-46 |
| MS.gene051692 | MS.gene54347 | -0.80133 | 9.47E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene54347 | -0.82705 | 1.94E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene54347 | -0.813482 | 2.50E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene54347 | -0.833499 | 5.15E-56 | -1.69E-46 |
| MS.gene051874 | MS.gene54347 | -0.820598 | 6.30E-53 | -1.69E-46 |
| MS.gene051907 | MS.gene54347 | 0.805 | 1.65E-49 | -1.69E-46 |
| MS.gene05234 | MS.gene54347 | 0.808272 | 3.36E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene54347 | -0.804274 | 2.34E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene54347 | 0.817412 | 3.34E-52 | -1.69E-46 |
| MS.gene05244 | MS.gene54347 | 0.803028 | 4.24E-49 | -1.69E-46 |
| MS.gene052606 | MS.gene54347 | 0.814325 | 1.63E-51 | -1.69E-46 |
| MS.gene052615 | MS.gene54347 | -0.807665 | 4.52E-50 | -1.69E-46 |
| MS.gene052805 | MS.gene54347 | 0.815082 | 1.11E-51 | -1.69E-46 |
| MS.gene052870 | MS.gene54347 | -0.804298 | 2.31E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene54347 | -0.809407 | 1.92E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene54347 | -0.804401 | 2.20E-49 | -1.69E-46 |
| MS.gene053030 | MS.gene54347 | 0.820921 | 5.31E-53 | -1.69E-46 |
| MS.gene053031 | MS.gene54347 | 0.802998 | 4.30E-49 | -1.69E-46 |
| MS.gene053033 | MS.gene54347 | 0.804574 | 2.02E-49 | -1.69E-46 |
| MS.gene053104 | MS.gene54347 | -0.805009 | 1.64E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene54347 | -0.808247 | 3.40E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene54347 | 0.80428 | 2.33E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene54347 | 0.841182 | 5.55E-58 | -1.69E-46 |
| MS.gene053421 | MS.gene54347 | 0.829908 | 3.96E-55 | -1.69E-46 |
| MS.gene053449 | MS.gene54347 | -0.813933 | 1.99E-51 | -1.69E-46 |
| MS.gene053479 | MS.gene54347 | -0.802697 | 4.96E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene54347 | -0.800106 | 1.68E-48 | -1.69E-46 |
| MS.gene053776 | MS.gene54347 | 0.800831 | 1.20E-48 | -1.69E-46 |
| MS.gene053824 | MS.gene54347 | -0.810744 | 9.90E-51 | -1.69E-46 |
| MS.gene053920 | MS.gene54347 | 0.801546 | 8.56E-49 | -1.69E-46 |
| MS.gene054181 | MS.gene54347 | 0.803803 | 2.93E-49 | -1.69E-46 |
| MS.gene054290 | MS.gene54347 | 0.856357 | 3.40E-62 | -1.69E-46 |
| MS.gene054421 | MS.gene54347 | 0.803352 | 3.63E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene54347 | -0.82368 | 1.22E-53 | -1.69E-46 |
| MS.gene054706 | MS.gene54347 | 0.851365 | 9.31E-61 | -1.69E-46 |
| MS.gene054707 | MS.gene54347 | 0.809212 | 2.12E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene54347 | 0.823695 | 1.21E-53 | -1.69E-46 |
| MS.gene05494 | MS.gene54347 | -0.813332 | 2.70E-51 | -1.69E-46 |
| MS.gene054965 | MS.gene54347 | 0.802023 | 6.83E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene54347 | 0.80585 | 1.09E-49 | -1.69E-46 |
| MS.gene055154 | MS.gene54347 | 0.829859 | 4.07E-55 | -1.69E-46 |
| MS.gene055158 | MS.gene54347 | 0.816406 | 5.62E-52 | -1.69E-46 |
| MS.gene055159 | MS.gene54347 | 0.801047 | 1.08E-48 | -1.69E-46 |
| MS.gene055202 | MS.gene54347 | 0.832846 | 7.49E-56 | -1.69E-46 |
| MS.gene055206 | MS.gene54347 | -0.828993 | 6.60E-55 | -1.69E-46 |
| MS.gene055502 | MS.gene54347 | -0.828676 | 7.88E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene54347 | -0.833813 | 4.30E-56 | -1.69E-46 |
| MS.gene05589 | MS.gene54347 | -0.800513 | 1.39E-48 | -1.69E-46 |
| MS.gene055941 | MS.gene54347 | -0.827577 | 1.45E-54 | -1.69E-46 |
| MS.gene056387 | MS.gene54347 | -0.818396 | 2.00E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene54347 | -0.816826 | 4.53E-52 | -1.69E-46 |
| MS.gene056549 | MS.gene54347 | -0.806452 | 8.17E-50 | -1.69E-46 |
| MS.gene056590 | MS.gene54347 | 0.81033 | 1.22E-50 | -1.69E-46 |
| MS.gene056591 | MS.gene54347 | 0.808499 | 3.01E-50 | -1.69E-46 |
| MS.gene056748 | MS.gene54347 | 0.801353 | 9.37E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene54347 | 0.820989 | 5.12E-53 | -1.69E-46 |
| MS.gene056920 | MS.gene54347 | 0.806912 | 6.53E-50 | -1.69E-46 |
| MS.gene056946 | MS.gene54347 | -0.802087 | 6.62E-49 | -1.69E-46 |
| MS.gene057086 | MS.gene54347 | -0.810802 | 9.62E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene54347 | -0.806845 | 6.75E-50 | -1.69E-46 |
| MS.gene057544 | MS.gene54347 | 0.823253 | 1.53E-53 | -1.69E-46 |
| MS.gene057768 | MS.gene54347 | 0.802633 | 5.11E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene54347 | -0.814078 | 1.85E-51 | -1.69E-46 |
| MS.gene058067 | MS.gene54347 | 0.805749 | 1.15E-49 | -1.69E-46 |
| MS.gene058093 | MS.gene54347 | 0.827177 | 1.81E-54 | -1.69E-46 |
| MS.gene058099 | MS.gene54347 | 0.819241 | 1.29E-52 | -1.69E-46 |
| MS.gene058157 | MS.gene54347 | -0.811763 | 5.95E-51 | -1.69E-46 |
| MS.gene058158 | MS.gene54347 | 0.846621 | 1.94E-59 | -1.69E-46 |
| MS.gene058171 | MS.gene54347 | 0.814656 | 1.38E-51 | -1.69E-46 |
| MS.gene058173 | MS.gene54347 | 0.806634 | 7.48E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene54347 | 0.819973 | 8.76E-53 | -1.69E-46 |
| MS.gene058376 | MS.gene54347 | -0.809831 | 1.56E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene54347 | -0.809537 | 1.80E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene54347 | -0.801084 | 1.06E-48 | -1.69E-46 |
| MS.gene058544 | MS.gene54347 | -0.801046 | 1.08E-48 | -1.69E-46 |
| MS.gene058603 | MS.gene54347 | 0.805884 | 1.08E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene54347 | -0.821049 | 4.96E-53 | -1.69E-46 |
| MS.gene05883 | MS.gene54347 | -0.802528 | 5.38E-49 | -1.69E-46 |
| MS.gene058840 | MS.gene54347 | 0.803601 | 3.23E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene54347 | -0.819071 | 1.41E-52 | -1.69E-46 |
| MS.gene059037 | MS.gene54347 | 0.800244 | 1.58E-48 | -1.69E-46 |
| MS.gene059315 | MS.gene54347 | 0.80454 | 2.06E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene54347 | -0.830518 | 2.81E-55 | -1.69E-46 |
| MS.gene059367 | MS.gene54347 | -0.808933 | 2.43E-50 | -1.69E-46 |
| MS.gene059526 | MS.gene54347 | 0.810436 | 1.15E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene54347 | -0.819661 | 1.03E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene54347 | -0.810652 | 1.04E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene54347 | -0.804703 | 1.90E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene54347 | -0.82835 | 9.44E-55 | -1.69E-46 |
| MS.gene059944 | MS.gene54347 | 0.807642 | 4.57E-50 | -1.69E-46 |
| MS.gene059955 | MS.gene54347 | 0.817294 | 3.55E-52 | -1.69E-46 |
| MS.gene060482 | MS.gene54347 | -0.828399 | 9.19E-55 | -1.69E-46 |
| MS.gene060762 | MS.gene54347 | -0.828248 | 9.99E-55 | -1.69E-46 |
| MS.gene060837 | MS.gene54347 | -0.806283 | 8.87E-50 | -1.69E-46 |
| MS.gene061041 | MS.gene54347 | -0.804186 | 2.44E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54347.t1 | MTR_7g405740 | 95.152 | 165 | 5 | 1 | 1 | 165 | 1 | 162 | 8.84e-116 | 325 |
| MS.gene54347.t1 | MTR_3g098970 | 49.612 | 129 | 54 | 4 | 7 | 135 | 1 | 118 | 1.31e-31 | 111 |
| MS.gene54347.t1 | MTR_8g096440 | 41.406 | 128 | 59 | 3 | 24 | 144 | 5 | 123 | 2.10e-26 | 97.8 |
| MS.gene54347.t1 | MTR_8g096500 | 53.165 | 79 | 33 | 1 | 70 | 144 | 49 | 127 | 6.47e-24 | 91.7 |
| MS.gene54347.t1 | MTR_8g096470 | 53.125 | 64 | 30 | 0 | 71 | 134 | 47 | 110 | 1.34e-20 | 82.0 |
| MS.gene54347.t1 | MTR_4g072160 | 53.125 | 64 | 30 | 0 | 70 | 133 | 37 | 100 | 1.29e-17 | 75.1 |
| MS.gene54347.t1 | MTR_2g066830 | 43.478 | 92 | 39 | 1 | 39 | 130 | 40 | 118 | 8.78e-17 | 72.8 |
| MS.gene54347.t1 | MTR_3g092220 | 42.169 | 83 | 46 | 1 | 56 | 136 | 19 | 101 | 1.51e-16 | 71.6 |
| MS.gene54347.t1 | MTR_4g124750 | 45.455 | 66 | 36 | 0 | 70 | 135 | 69 | 134 | 1.54e-16 | 72.8 |
| MS.gene54347.t1 | MTR_8g461210 | 50.769 | 65 | 32 | 0 | 66 | 130 | 31 | 95 | 2.80e-16 | 70.9 |
| MS.gene54347.t1 | MTR_3g109160 | 35.000 | 140 | 74 | 4 | 15 | 145 | 15 | 146 | 3.13e-16 | 72.4 |
| MS.gene54347.t1 | MTR_2g043960 | 40.845 | 71 | 42 | 0 | 70 | 140 | 76 | 146 | 3.42e-16 | 72.0 |
| MS.gene54347.t1 | MTR_1g024085 | 41.026 | 78 | 46 | 0 | 64 | 141 | 31 | 108 | 1.03e-15 | 70.1 |
| MS.gene54347.t1 | MTR_7g104950 | 43.056 | 72 | 37 | 1 | 73 | 144 | 53 | 120 | 1.40e-15 | 69.3 |
| MS.gene54347.t1 | MTR_3g117630 | 42.857 | 84 | 42 | 3 | 48 | 129 | 6 | 85 | 2.93e-15 | 67.8 |
| MS.gene54347.t1 | MTR_3g084250 | 40.476 | 84 | 45 | 2 | 46 | 128 | 5 | 84 | 3.16e-15 | 67.4 |
| MS.gene54347.t1 | MTR_1g059770 | 42.466 | 73 | 42 | 0 | 62 | 134 | 41 | 113 | 6.44e-15 | 67.8 |
| MS.gene54347.t1 | MTR_7g118010 | 44.928 | 69 | 36 | 1 | 70 | 136 | 23 | 91 | 1.99e-14 | 65.9 |
| MS.gene54347.t1 | MTR_7g104940 | 45.161 | 62 | 34 | 0 | 73 | 134 | 53 | 114 | 6.67e-14 | 65.1 |
| MS.gene54347.t1 | MTR_4g005320 | 35.211 | 71 | 46 | 0 | 69 | 139 | 69 | 139 | 7.47e-14 | 65.9 |
| MS.gene54347.t1 | MTR_4g072770 | 41.667 | 72 | 41 | 1 | 65 | 135 | 10 | 81 | 1.47e-13 | 62.8 |
| MS.gene54347.t1 | MTR_3g084240 | 47.541 | 61 | 31 | 1 | 70 | 129 | 25 | 85 | 3.74e-13 | 62.0 |
| MS.gene54347.t1 | MTR_1g009150 | 39.394 | 66 | 40 | 0 | 70 | 135 | 71 | 136 | 3.91e-13 | 64.3 |
| MS.gene54347.t1 | MTR_4g072600 | 38.158 | 76 | 46 | 1 | 55 | 129 | 5 | 80 | 4.04e-13 | 62.0 |
| MS.gene54347.t1 | MTR_3g084170 | 38.824 | 85 | 47 | 2 | 46 | 129 | 5 | 85 | 5.20e-13 | 61.6 |
| MS.gene54347.t1 | MTR_4g072220 | 41.667 | 72 | 41 | 1 | 56 | 126 | 12 | 83 | 6.18e-13 | 61.6 |
| MS.gene54347.t1 | MTR_8g026730 | 43.210 | 81 | 40 | 3 | 68 | 142 | 25 | 105 | 6.39e-13 | 62.0 |
| MS.gene54347.t1 | MTR_3g084150 | 36.471 | 85 | 49 | 2 | 46 | 129 | 5 | 85 | 6.43e-13 | 61.6 |
| MS.gene54347.t1 | MTR_3g084180 | 36.471 | 85 | 49 | 2 | 46 | 129 | 5 | 85 | 6.43e-13 | 61.6 |
| MS.gene54347.t1 | MTR_1g061570 | 37.500 | 64 | 40 | 0 | 70 | 133 | 19 | 82 | 1.20e-12 | 61.6 |
| MS.gene54347.t1 | MTR_3g097120 | 38.824 | 85 | 43 | 2 | 62 | 138 | 2 | 85 | 1.44e-12 | 60.8 |
| MS.gene54347.t1 | MTR_4g072300 | 38.750 | 80 | 48 | 1 | 56 | 134 | 12 | 91 | 1.45e-12 | 60.5 |
| MS.gene54347.t1 | MTR_4g072570 | 40.909 | 66 | 38 | 1 | 70 | 134 | 25 | 90 | 1.62e-12 | 60.5 |
| MS.gene54347.t1 | MTR_4g072500 | 47.541 | 61 | 31 | 1 | 70 | 129 | 25 | 85 | 1.82e-12 | 60.5 |
| MS.gene54347.t1 | MTR_7g101740 | 45.902 | 61 | 33 | 0 | 70 | 130 | 40 | 100 | 1.93e-12 | 60.8 |
| MS.gene54347.t1 | MTR_4g050700 | 49.231 | 65 | 30 | 2 | 68 | 129 | 22 | 86 | 2.15e-12 | 60.1 |
| MS.gene54347.t1 | MTR_2g012410 | 49.231 | 65 | 30 | 2 | 68 | 129 | 22 | 86 | 2.15e-12 | 60.1 |
| MS.gene54347.t1 | MTR_8g461410 | 36.471 | 85 | 49 | 2 | 46 | 129 | 5 | 85 | 2.19e-12 | 60.1 |
| MS.gene54347.t1 | MTR_1g094750 | 44.444 | 63 | 35 | 0 | 68 | 130 | 48 | 110 | 2.60e-12 | 60.5 |
| MS.gene54347.t1 | MTR_3g084210 | 47.692 | 65 | 30 | 3 | 64 | 126 | 20 | 82 | 2.65e-12 | 60.1 |
| MS.gene54347.t1 | MTR_4g072820 | 36.842 | 76 | 47 | 1 | 55 | 129 | 5 | 80 | 3.35e-12 | 59.3 |
| MS.gene54347.t1 | MTR_4g072260 | 37.333 | 75 | 46 | 1 | 56 | 129 | 12 | 86 | 3.89e-12 | 59.7 |
| MS.gene54347.t1 | MTR_4g072330 | 40.909 | 66 | 38 | 1 | 70 | 134 | 23 | 88 | 5.14e-12 | 59.3 |
| MS.gene54347.t1 | MTR_4g072640 | 45.902 | 61 | 32 | 1 | 70 | 129 | 25 | 85 | 5.22e-12 | 59.3 |
| MS.gene54347.t1 | MTR_4g025830 | 38.961 | 77 | 44 | 1 | 70 | 143 | 79 | 155 | 6.26e-12 | 60.8 |
| MS.gene54347.t1 | MTR_1g063950 | 31.624 | 117 | 58 | 2 | 14 | 130 | 14 | 108 | 8.46e-12 | 59.3 |
| MS.gene54347.t1 | MTR_3g110045 | 47.458 | 59 | 28 | 2 | 70 | 126 | 84 | 141 | 8.60e-12 | 60.1 |
| MS.gene54347.t1 | MTR_4g072910 | 46.552 | 58 | 30 | 1 | 70 | 126 | 35 | 92 | 1.12e-11 | 58.5 |
| MS.gene54347.t1 | MTR_4g072870 | 39.394 | 66 | 39 | 1 | 70 | 134 | 26 | 91 | 1.37e-11 | 58.2 |
| MS.gene54347.t1 | MTR_4g072240 | 36.250 | 80 | 50 | 1 | 56 | 134 | 12 | 91 | 1.46e-11 | 58.2 |
| MS.gene54347.t1 | MTR_7g101890 | 38.889 | 72 | 42 | 1 | 61 | 130 | 43 | 114 | 1.56e-11 | 58.5 |
| MS.gene54347.t1 | MTR_4g072890 | 37.333 | 75 | 46 | 1 | 56 | 129 | 12 | 86 | 1.82e-11 | 57.8 |
| MS.gene54347.t1 | MTR_3g110038 | 44.262 | 61 | 33 | 1 | 70 | 129 | 25 | 85 | 2.28e-11 | 57.4 |
| MS.gene54347.t1 | MTR_4g072530 | 47.541 | 61 | 31 | 1 | 70 | 129 | 25 | 85 | 2.77e-11 | 57.4 |
| MS.gene54347.t1 | MTR_3g084230 | 45.763 | 59 | 29 | 2 | 70 | 126 | 25 | 82 | 3.23e-11 | 57.0 |
| MS.gene54347.t1 | MTR_8g461420 | 45.763 | 59 | 29 | 2 | 70 | 126 | 25 | 82 | 3.41e-11 | 57.0 |
| MS.gene54347.t1 | MTR_3g110032 | 35.294 | 85 | 51 | 2 | 46 | 129 | 5 | 86 | 3.45e-11 | 57.0 |
| MS.gene54347.t1 | MTR_4g072620 | 47.458 | 59 | 30 | 1 | 72 | 129 | 27 | 85 | 4.94e-11 | 56.6 |
| MS.gene54347.t1 | MTR_4g072250 | 42.424 | 66 | 36 | 2 | 70 | 134 | 26 | 90 | 5.43e-11 | 56.6 |
| MS.gene54347.t1 | MTR_4g072860 | 44.262 | 61 | 33 | 1 | 70 | 129 | 26 | 86 | 5.50e-11 | 56.6 |
| MS.gene54347.t1 | MTR_3g084190 | 44.068 | 59 | 30 | 2 | 70 | 126 | 25 | 82 | 8.47e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54347.t1 | AT5G50760 | 44.828 | 116 | 61 | 2 | 19 | 133 | 5 | 118 | 2.05e-23 | 91.3 |
| MS.gene54347.t1 | AT1G56150 | 47.887 | 71 | 37 | 0 | 60 | 130 | 28 | 98 | 4.67e-18 | 75.5 |
| MS.gene54347.t1 | AT5G20810 | 46.970 | 66 | 35 | 0 | 70 | 135 | 79 | 144 | 2.75e-17 | 74.7 |
| MS.gene54347.t1 | AT5G20810 | 46.970 | 66 | 35 | 0 | 70 | 135 | 79 | 144 | 4.02e-17 | 75.1 |
| MS.gene54347.t1 | AT3G43120 | 45.455 | 66 | 36 | 0 | 70 | 135 | 79 | 144 | 8.02e-17 | 73.6 |
| MS.gene54347.t1 | AT3G12830 | 44.048 | 84 | 44 | 2 | 49 | 130 | 28 | 110 | 3.38e-16 | 71.2 |
| MS.gene54347.t1 | AT2G46690 | 45.833 | 72 | 36 | 1 | 68 | 136 | 22 | 93 | 1.35e-15 | 69.3 |
| MS.gene54347.t1 | AT3G61900 | 41.379 | 87 | 39 | 2 | 68 | 142 | 28 | 114 | 1.72e-15 | 69.3 |
| MS.gene54347.t1 | AT1G16510 | 46.970 | 66 | 35 | 0 | 65 | 130 | 49 | 114 | 4.15e-15 | 68.9 |
| MS.gene54347.t1 | AT4G00880 | 40.964 | 83 | 45 | 2 | 56 | 136 | 16 | 96 | 1.10e-14 | 67.0 |
| MS.gene54347.t1 | AT4G34750 | 44.262 | 61 | 34 | 0 | 70 | 130 | 37 | 97 | 1.24e-14 | 67.4 |
| MS.gene54347.t1 | AT4G34750 | 44.262 | 61 | 34 | 0 | 70 | 130 | 37 | 97 | 1.24e-14 | 67.4 |
| MS.gene54347.t1 | AT1G75590 | 49.123 | 57 | 29 | 0 | 70 | 126 | 42 | 98 | 7.04e-14 | 65.9 |
| MS.gene54347.t1 | AT1G79130 | 36.111 | 108 | 56 | 2 | 26 | 133 | 17 | 111 | 1.31e-13 | 64.3 |
| MS.gene54347.t1 | AT5G10990 | 49.123 | 57 | 29 | 0 | 70 | 126 | 41 | 97 | 1.34e-13 | 64.7 |
| MS.gene54347.t1 | AT5G53590 | 42.466 | 73 | 37 | 1 | 70 | 137 | 46 | 118 | 1.68e-13 | 64.3 |
| MS.gene54347.t1 | AT1G19840 | 44.262 | 61 | 34 | 0 | 70 | 130 | 41 | 101 | 1.39e-12 | 62.4 |
| MS.gene54347.t1 | AT2G24400 | 40.230 | 87 | 50 | 1 | 52 | 136 | 46 | 132 | 1.98e-12 | 62.4 |
| MS.gene54347.t1 | AT4G31320 | 40.000 | 80 | 43 | 2 | 71 | 145 | 81 | 160 | 5.47e-12 | 61.2 |
| MS.gene54347.t1 | AT3G20220 | 38.235 | 68 | 41 | 1 | 65 | 131 | 42 | 109 | 9.40e-12 | 59.3 |
| MS.gene54347.t1 | AT2G37030 | 40.984 | 61 | 36 | 0 | 70 | 130 | 49 | 109 | 2.76e-11 | 58.2 |
| MS.gene54347.t1 | AT3G60690 | 38.542 | 96 | 52 | 3 | 58 | 148 | 74 | 167 | 3.85e-11 | 58.9 |
| MS.gene54347.t1 | AT3G51200 | 36.923 | 65 | 41 | 0 | 66 | 130 | 36 | 100 | 6.17e-11 | 56.6 |
| MS.gene54347.t1 | AT5G66260 | 36.364 | 66 | 41 | 1 | 70 | 135 | 34 | 98 | 6.42e-11 | 56.6 |
| MS.gene54347.t1 | AT2G36210 | 31.707 | 123 | 67 | 4 | 14 | 130 | 4 | 115 | 8.37e-11 | 57.0 |
Find 40 sgRNAs with CRISPR-Local
Find 52 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCTTCTTAGCCCTTCC+AGG | 0.273002 | 7.4:-93980940 | MS.gene54347:CDS |
| CCTTCCCAAGGTTGTACTTT+TGG | 0.273068 | 7.4:-93980980 | MS.gene54347:CDS |
| ACCACAAACCTTTGCATTTG+AGG | 0.340829 | 7.4:+93981151 | None:intergenic |
| GGAAAAGGGAACAAGAAAAT+AGG | 0.347522 | 7.4:-93981364 | MS.gene54347:CDS |
| GAAGAAGCTGAATCAGAATA+TGG | 0.364921 | 7.4:-93981085 | MS.gene54347:CDS |
| TTACAAAGTGTTGATGGAAA+TGG | 0.371199 | 7.4:-93981014 | MS.gene54347:CDS |
| TTATAGCTGCCAAGGACCTT+TGG | 0.404368 | 7.4:-93981062 | MS.gene54347:CDS |
| AAGAACATGAAGCAAGGAAA+AGG | 0.428717 | 7.4:-93981379 | MS.gene54347:CDS |
| ACCTCAAATGCAAAGGTTTG+TGG | 0.451149 | 7.4:-93981152 | MS.gene54347:CDS |
| GTTGTTTAAGACAATCATCC+TGG | 0.454314 | 7.4:+93980922 | None:intergenic |
| GATTTGCTCCTTCTTGTCGT+TGG | 0.461730 | 7.4:+93981253 | None:intergenic |
| TCTTCGCCCCGCGGAAGACT+AGG | 0.501811 | 7.4:+93981226 | None:intergenic |
| TAAAAGACATCAACATTACA+AGG | 0.510903 | 7.4:+93981034 | None:intergenic |
| AGAACATGAAGCAAGGAAAA+GGG | 0.512113 | 7.4:-93981378 | MS.gene54347:CDS |
| TGCAAGTCCATAGGAGGAGG+AGG | 0.512745 | 7.4:-93981316 | MS.gene54347:CDS |
| ATCATGGCCTAGTCTTCCGC+GGG | 0.516084 | 7.4:-93981233 | MS.gene54347:CDS |
| AAGGAAGAGCCAAAGGTCCT+TGG | 0.517712 | 7.4:+93981053 | None:intergenic |
| CGACAAGAAGGAGCAAATCA+TGG | 0.519386 | 7.4:-93981249 | MS.gene54347:CDS |
| TAGACAAAAGAAAGTGGCCC+CGG | 0.522285 | 7.4:-93981200 | MS.gene54347:CDS |
| TCAAGCAACATCTTGAACAA+AGG | 0.532123 | 7.4:+93981106 | None:intergenic |
| ACGACCAAAAGTACAACCTT+GGG | 0.533998 | 7.4:+93980976 | None:intergenic |
| AACGACCAAAAGTACAACCT+TGG | 0.538821 | 7.4:+93980975 | None:intergenic |
| AGATGCAAGTCCATAGGAGG+AGG | 0.541895 | 7.4:-93981319 | MS.gene54347:CDS |
| AAGTCCATAGGAGGAGGAGG+AGG | 0.549753 | 7.4:-93981313 | MS.gene54347:CDS |
| AGAAAATAGACAAAAGAAAG+TGG | 0.550670 | 7.4:-93981206 | MS.gene54347:CDS |
| GAATATGGTTATAGCTGCCA+AGG | 0.552741 | 7.4:-93981070 | MS.gene54347:CDS |
| CAAAAGAAAGTGGCCCCGGA+GGG | 0.557663 | 7.4:-93981196 | MS.gene54347:CDS |
| CAGTGATTCCAACGACAAGA+AGG | 0.563887 | 7.4:-93981261 | MS.gene54347:CDS |
| TTTAAGACAATCATCCTGGA+AGG | 0.580942 | 7.4:+93980926 | None:intergenic |
| TGGGAGAGATGCAAGTCCAT+AGG | 0.597578 | 7.4:-93981325 | MS.gene54347:CDS |
| AATCATGGCCTAGTCTTCCG+CGG | 0.600149 | 7.4:-93981234 | MS.gene54347:CDS |
| GAGAGATGCAAGTCCATAGG+AGG | 0.601664 | 7.4:-93981322 | MS.gene54347:CDS |
| TTAAGACAATCATCCTGGAA+GGG | 0.611880 | 7.4:+93980927 | None:intergenic |
| ACATTACAAGGAAGAGCCAA+AGG | 0.626356 | 7.4:+93981046 | None:intergenic |
| ACGTTGGACCTCAAATGCAA+AGG | 0.634178 | 7.4:-93981159 | MS.gene54347:CDS |
| ATTGGCAAGAACATGAAGCA+AGG | 0.634830 | 7.4:-93981385 | MS.gene54347:CDS |
| GATAACGAAGCTCCTTCCCA+AGG | 0.635029 | 7.4:-93980992 | MS.gene54347:CDS |
| ACAAAAGAAAGTGGCCCCGG+AGG | 0.644682 | 7.4:-93981197 | MS.gene54347:CDS |
| CCAAAAGTACAACCTTGGGA+AGG | 0.674764 | 7.4:+93980980 | None:intergenic |
| TCATGGCCTAGTCTTCCGCG+GGG | 0.775767 | 7.4:-93981232 | MS.gene54347:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGAAAATAGACAAAAGAAAG+TGG | - | chr7.4:93981101-93981120 | MS.gene54347:CDS | 25.0% |
| ! | TAAAAGACATCAACATTACA+AGG | + | chr7.4:93981276-93981295 | None:intergenic | 25.0% |
| !! | TTACAAAGTGTTGATGGAAA+TGG | - | chr7.4:93981293-93981312 | MS.gene54347:CDS | 30.0% |
| !!! | TGTCTTTTACAAAGTGTTGA+TGG | - | chr7.4:93981287-93981306 | MS.gene54347:CDS | 30.0% |
| AAGAACATGAAGCAAGGAAA+AGG | - | chr7.4:93980928-93980947 | MS.gene54347:CDS | 35.0% | |
| AGAACATGAAGCAAGGAAAA+GGG | - | chr7.4:93980929-93980948 | MS.gene54347:CDS | 35.0% | |
| GAAGAAGCTGAATCAGAATA+TGG | - | chr7.4:93981222-93981241 | MS.gene54347:CDS | 35.0% | |
| GGAAAAGGGAACAAGAAAAT+AGG | - | chr7.4:93980943-93980962 | MS.gene54347:CDS | 35.0% | |
| TCAAGCAACATCTTGAACAA+AGG | + | chr7.4:93981204-93981223 | None:intergenic | 35.0% | |
| TTAAGACAATCATCCTGGAA+GGG | + | chr7.4:93981383-93981402 | None:intergenic | 35.0% | |
| ! | GTTGTTTAAGACAATCATCC+TGG | + | chr7.4:93981388-93981407 | None:intergenic | 35.0% |
| ! | TTTAAGACAATCATCCTGGA+AGG | + | chr7.4:93981384-93981403 | None:intergenic | 35.0% |
| ACATTACAAGGAAGAGCCAA+AGG | + | chr7.4:93981264-93981283 | None:intergenic | 40.0% | |
| ACCACAAACCTTTGCATTTG+AGG | + | chr7.4:93981159-93981178 | None:intergenic | 40.0% | |
| ACCTCAAATGCAAAGGTTTG+TGG | - | chr7.4:93981155-93981174 | MS.gene54347:CDS | 40.0% | |
| AGGCCTCATAACAAAAACGT+GGG | - | chr7.4:93980963-93980982 | MS.gene54347:CDS | 40.0% | |
| ATTGGCAAGAACATGAAGCA+AGG | - | chr7.4:93980922-93980941 | MS.gene54347:CDS | 40.0% | |
| GAATATGGTTATAGCTGCCA+AGG | - | chr7.4:93981237-93981256 | MS.gene54347:CDS | 40.0% | |
| TAGGCCTCATAACAAAAACG+TGG | - | chr7.4:93980962-93980981 | MS.gene54347:CDS | 40.0% | |
| ! | AACGACCAAAAGTACAACCT+TGG | + | chr7.4:93981335-93981354 | None:intergenic | 40.0% |
| ! | ACGACCAAAAGTACAACCTT+GGG | + | chr7.4:93981334-93981353 | None:intergenic | 40.0% |
| !! | TCTCCCACGTTTTTGTTATG+AGG | + | chr7.4:93980969-93980988 | None:intergenic | 40.0% |
| ACGTTGGACCTCAAATGCAA+AGG | - | chr7.4:93981148-93981167 | MS.gene54347:CDS | 45.0% | |
| ATCATCTTCTTAGCCCTTCC+AGG | - | chr7.4:93981367-93981386 | MS.gene54347:CDS | 45.0% | |
| CAGTGATTCCAACGACAAGA+AGG | - | chr7.4:93981046-93981065 | MS.gene54347:CDS | 45.0% | |
| CGACAAGAAGGAGCAAATCA+TGG | - | chr7.4:93981058-93981077 | MS.gene54347:CDS | 45.0% | |
| TACACCGAAAAACATCCCTC+CGG | + | chr7.4:93981129-93981148 | None:intergenic | 45.0% | |
| TAGACAAAAGAAAGTGGCCC+CGG | - | chr7.4:93981107-93981126 | MS.gene54347:CDS | 45.0% | |
| TTATAGCTGCCAAGGACCTT+TGG | - | chr7.4:93981245-93981264 | MS.gene54347:CDS | 45.0% | |
| ! | CCAAAAGTACAACCTTGGGA+AGG | + | chr7.4:93981330-93981349 | None:intergenic | 45.0% |
| ! | CCTTCCCAAGGTTGTACTTT+TGG | - | chr7.4:93981327-93981346 | MS.gene54347:CDS | 45.0% |
| ! | GATTTGCTCCTTCTTGTCGT+TGG | + | chr7.4:93981057-93981076 | None:intergenic | 45.0% |
| !! | GGATGTTTTTCGGTGTACGT+TGG | - | chr7.4:93981132-93981151 | MS.gene54347:CDS | 45.0% |
| AAGGAAGAGCCAAAGGTCCT+TGG | + | chr7.4:93981257-93981276 | None:intergenic | 50.0% | |
| ACACCGAAAAACATCCCTCC+GGG | + | chr7.4:93981128-93981147 | None:intergenic | 50.0% | |
| AGATGCAAGTCCATAGGAGG+AGG | - | chr7.4:93980988-93981007 | MS.gene54347:CDS | 50.0% | |
| GAGAGATGCAAGTCCATAGG+AGG | - | chr7.4:93980985-93981004 | MS.gene54347:CDS | 50.0% | |
| GATAACGAAGCTCCTTCCCA+AGG | - | chr7.4:93981315-93981334 | MS.gene54347:CDS | 50.0% | |
| TGGGAGAGATGCAAGTCCAT+AGG | - | chr7.4:93980982-93981001 | MS.gene54347:CDS | 50.0% | |
| ! | AATCATGGCCTAGTCTTCCG+CGG | - | chr7.4:93981073-93981092 | MS.gene54347:CDS | 50.0% |
| ! | TGTCTATTTTCTTCGCCCCG+CGG | + | chr7.4:93981093-93981112 | None:intergenic | 50.0% |
| AAGTCCATAGGAGGAGGAGG+AGG | - | chr7.4:93980994-93981013 | MS.gene54347:CDS | 55.0% | |
| ACAAAAGAAAGTGGCCCCGG+AGG | - | chr7.4:93981110-93981129 | MS.gene54347:CDS | 55.0% | |
| CAAAAGAAAGTGGCCCCGGA+GGG | - | chr7.4:93981111-93981130 | MS.gene54347:CDS | 55.0% | |
| CACCGAAAAACATCCCTCCG+GGG | + | chr7.4:93981127-93981146 | None:intergenic | 55.0% | |
| TGCAAGTCCATAGGAGGAGG+AGG | - | chr7.4:93980991-93981010 | MS.gene54347:CDS | 55.0% | |
| ! | ATCATGGCCTAGTCTTCCGC+GGG | - | chr7.4:93981074-93981093 | MS.gene54347:CDS | 55.0% |
| TCCATAGGAGGAGGAGGAGG+AGG | - | chr7.4:93980997-93981016 | MS.gene54347:CDS | 60.0% | |
| TCCTCCTCCTCCTCCTCCTA+TGG | + | chr7.4:93981001-93981020 | None:intergenic | 60.0% | |
| ! | GGCCCCGGAGGGATGTTTTT+CGG | - | chr7.4:93981122-93981141 | MS.gene54347:CDS | 60.0% |
| ! | TCATGGCCTAGTCTTCCGCG+GGG | - | chr7.4:93981075-93981094 | MS.gene54347:CDS | 60.0% |
| TCTTCGCCCCGCGGAAGACT+AGG | + | chr7.4:93981084-93981103 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 93980916 | 93981413 | 93980916 | ID=MS.gene54347 |
| chr7.4 | mRNA | 93980916 | 93981413 | 93980916 | ID=MS.gene54347.t1;Parent=MS.gene54347 |
| chr7.4 | exon | 93980916 | 93981413 | 93980916 | ID=MS.gene54347.t1.exon1;Parent=MS.gene54347.t1 |
| chr7.4 | CDS | 93980916 | 93981413 | 93980916 | ID=cds.MS.gene54347.t1;Parent=MS.gene54347.t1 |
| Gene Sequence |
| Protein sequence |
