AlfalfaGEDB | MS.gene64920

M. sativa cultivar XinJiangDaYe / MS.gene64920

KEGG: K11254
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:0110165 GO:1901363
PFAM: PF15511.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64920.t1	KCW52694.1	100	103	0	0	1	103	4	106	7.50E-48	199.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64920.t1	P62785	100.0	103	0	0	1	103	1	103	1.8e-50	199.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64920.t1	M5VRN0	100.0	103	0	0	1	103	1	103	5.4e-48	199.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049821	MS.gene64920	0.852156	5.55E-61	-1.69E-46
MS.gene050277	MS.gene64920	0.818773	1.65E-52	-1.69E-46
MS.gene050838	MS.gene64920	0.837528	4.93E-57	-1.69E-46
MS.gene051063	MS.gene64920	0.815235	1.03E-51	-1.69E-46
MS.gene051233	MS.gene64920	0.812606	3.89E-51	-1.69E-46
MS.gene051676	MS.gene64920	0.801489	8.79E-49	-1.69E-46
MS.gene051700	MS.gene64920	0.807156	5.80E-50	-1.69E-46
MS.gene051746	MS.gene64920	0.817018	4.10E-52	-1.69E-46
MS.gene051748	MS.gene64920	0.825869	3.71E-54	-1.69E-46
MS.gene051903	MS.gene64920	0.832006	1.21E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene009027	MS.gene64920	PPI
MS.gene012391	MS.gene64920	PPI
MS.gene028629	MS.gene64920	PPI
MS.gene035718	MS.gene64920	PPI
MS.gene035719	MS.gene64920	PPI
MS.gene035787	MS.gene64920	PPI
MS.gene038469	MS.gene64920	PPI
MS.gene04067	MS.gene64920	PPI
MS.gene04433	MS.gene64920	PPI
MS.gene056215	MS.gene64920	PPI

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64920.t1	MTR_7g029510	100.000	103	1	103	1	103	2.85e-68	199
MS.gene64920.t1	MTR_7g099610	100.000	103	1	103	1	103	2.85e-68	199
MS.gene64920.t1	MTR_5g063620	100.000	103	1	103	1	103	2.85e-68	199
MS.gene64920.t1	MTR_4g061827	100.000	103	1	103	1	103	2.85e-68	199
MS.gene64920.t1	MTR_4g061920	100.000	103	1	103	1	103	2.85e-68	199
MS.gene64920.t1	MTR_3g462400	100.000	103	1	103	1	103	2.85e-68	199
MS.gene64920.t1	MTR_3g054380	100.000	103	1	103	1	103	2.85e-68	199
MS.gene64920.t1	MTR_3g462730	100.000	103	1	103	1	103	2.85e-68	199
MS.gene64920.t1	MTR_3g462510	100.000	103	1	103	1	103	2.85e-68	199
MS.gene64920.t1	MTR_3g070920	100.000	103	1	103	1	103	2.85e-68	199

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64920.t1	AT5G59970	100.000	103	1	103	1	103	2.99e-68	199
MS.gene64920.t1	AT5G59690	100.000	103	1	103	1	103	2.99e-68	199
MS.gene64920.t1	AT5G59970	100.000	103	1	103	1	103	2.99e-68	199
MS.gene64920.t1	AT3G46320	100.000	103	1	103	1	103	2.99e-68	199
MS.gene64920.t1	AT3G45930	100.000	103	1	103	1	103	2.99e-68	199
MS.gene64920.t1	AT3G53730	100.000	103	1	103	1	103	2.99e-68	199
MS.gene64920.t1	AT2G28740	100.000	103	1	103	1	103	2.99e-68	199
MS.gene64920.t1	AT1G07660	100.000	103	1	103	1	103	2.99e-68	199
MS.gene64920.t1	AT1G07820	100.000	103	1	103	1	103	2.99e-68	199
MS.gene64920.t1	AT1G07820	100.000	103	1	103	1	103	2.99e-68	199

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Find 38 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAACCCTCTACGGATTTG+GGG	0.565022	4.4:-43451337	MS.gene64920:CDS
AAGATGTCTGGGCGTGGAAA+AGG	0.434173	4.4:-43451624	MS.gene64920:CDS
AAGGAAGACTGTTACCGCCA+TGG	0.588179	4.4:-43451388	MS.gene64920:CDS
AGAACCCTCTACGGATTTGG+GGG	0.641482	4.4:-43451336	MS.gene64920:CDS
AGACAGGGAAGAACCCTCTA+CGG	0.600202	4.4:-43451345	MS.gene64920:CDS
AGCATAAACCACATCCATGG+CGG	0.701499	4.4:+43451374	None:intergenic
AGGAGGAAAGGGTTTGGGAA+AGG	0.475381	4.4:-43451604	MS.gene64920:CDS
ATGTCTGGGCGTGGAAAAGG+AGG	0.593086	4.4:-43451621	MS.gene64920:CDS
ATTCGTCGTCTTGCTCGTAG+AGG	0.654201	4.4:-43451519	MS.gene64920:CDS
CGAGCAAGACGACGAATCGC+AGG	0.578319	4.4:+43451525	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCTTGGAGAATGTGATTA+GGG	-	chr4.4:43451514-43451533	MS.gene64920:CDS	35.0%
TCTTCTTGGAGAATGTGATT+AGG	-	chr4.4:43451513-43451532	MS.gene64920:CDS	35.0%
GTTTATGCTCTCAAGAGACA+GGG	-	chr4.4:43451593-43451612	MS.gene64920:CDS	40.0%
TGGTGTGTTGAAGATCTTCT+TGG	-	chr4.4:43451499-43451518	MS.gene64920:CDS	40.0%
TTGATTTATGAGGAGACACG+TGG	-	chr4.4:43451479-43451498	MS.gene64920:CDS	40.0%
AAGAACCCTCTACGGATTTG+GGG	-	chr4.4:43451616-43451635	MS.gene64920:CDS	45.0%
AGCATAAACCACATCCATGG+CGG	+	chr4.4:43451582-43451601	None:intergenic	45.0%
GAAGAACCCTCTACGGATTT+GGG	-	chr4.4:43451615-43451634	MS.gene64920:CDS	45.0%
GGAAAAGGAGGAAAGGGTTT+GGG	-	chr4.4:43451344-43451363	MS.gene64920:CDS	45.0%
GGTTTATGCTCTCAAGAGAC+AGG	-	chr4.4:43451592-43451611	MS.gene64920:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	43451332	43451643	43451332	ID=MS.gene64920
chr4.4	mRNA	43451332	43451643	43451332	ID=MS.gene64920.t1;Parent=MS.gene64920
chr4.4	exon	43451332	43451643	43451332	ID=MS.gene64920.t1.exon1;Parent=MS.gene64920.t1
chr4.4	CDS	43451332	43451643	43451332	ID=cds.MS.gene64920.t1;Parent=MS.gene64920.t1

Gene Sequence	>MS.gene64920 ATGTCTGGGCGTGGAAAAGGAGGAAAGGGTTTGGGAAAGGGTGGAGCAAAACGACACCGTAAGGTGCTTCGTGACAACATCCAGGGAATCACAAAGCCTGCGATTCGTCGTCTTGCTCGTAGAGGAGGAGTGAAGCGTATCAGTGGTTTGATTTATGAGGAGACACGTGGTGTGTTGAAGATCTTCTTGGAGAATGTGATTAGGGATGCTGTGACTTACACTGAGCACGCTAGAAGGAAGACTGTTACCGCCATGGATGTGGTTTATGCTCTCAAGAGACAGGGAAGAACCCTCTACGGATTTGGGGGTTAG
Protein sequence	>MS.gene64920.t1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG