AlfalfaGEDB | MS.gene34092

M. sativa cultivar XinJiangDaYe / MS.gene34092

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34092.t1	XP_013469433.1	94.9	470	22	2	1	469	71	539	5.90E-241	843.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34092.t1	Q8GYC1	46.6	436	200	10	1	431	78	485	3.8e-79	297.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34092.t1	A0A072VPA1	94.9	470	22	2	1	469	71	539	4.2e-241	843.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene34092.t1	TF	C2H2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049222	MS.gene34092	0.833452	5.29E-56	-1.69E-46
MS.gene049609	MS.gene34092	0.828236	1.01E-54	-1.69E-46
MS.gene049611	MS.gene34092	-0.800459	1.43E-48	-1.69E-46
MS.gene049805	MS.gene34092	0.806096	9.71E-50	-1.69E-46
MS.gene050170	MS.gene34092	0.827602	1.43E-54	-1.69E-46
MS.gene050323	MS.gene34092	0.822675	2.09E-53	-1.69E-46
MS.gene050380	MS.gene34092	-0.823024	1.73E-53	-1.69E-46
MS.gene050381	MS.gene34092	-0.806271	8.92E-50	-1.69E-46
MS.gene050496	MS.gene34092	0.80287	4.57E-49	-1.69E-46
MS.gene050504	MS.gene34092	0.804272	2.34E-49	-1.69E-46

Showing 1 to 10 of 102 entries

Previous1 2 3 4 5…11Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34092.t1	MTR_1g094115	96.170	470	16	2	1	469	71	539	0.0	928
MS.gene34092.t1	MTR_1g094115	95.923	466	17	2	5	469	58	522	0.0	872
MS.gene34092.t1	MTR_1g112270	46.263	495	207	13	1	454	68	544	5.19e-114	347
MS.gene34092.t1	MTR_1g112270	46.450	493	205	13	1	452	79	553	6.95e-114	347
MS.gene34092.t1	MTR_8g017210	90.580	138	13	0	1	138	86	223	2.00e-94	295
MS.gene34092.t1	MTR_2g099990	82.468	154	24	1	1	151	1	154	1.04e-93	289
MS.gene34092.t1	MTR_2g099990	82.468	154	24	1	1	151	70	223	1.66e-93	291
MS.gene34092.t1	MTR_4g059870	41.000	500	190	20	1	462	62	494	8.42e-93	290
MS.gene34092.t1	MTR_1g016010	77.215	158	34	2	1	156	65	222	2.60e-88	277
MS.gene34092.t1	MTR_2g090745	82.609	138	24	0	1	138	31	168	8.80e-87	272

Showing 1 to 10 of 15 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34092.t1	AT2G02080	49.886	439	175	15	1	428	1	405	7.61e-114	342
MS.gene34092.t1	AT2G02080	49.886	439	175	15	1	428	1	405	7.61e-114	342
MS.gene34092.t1	AT2G02080	49.658	439	176	15	1	428	78	482	3.21e-113	343
MS.gene34092.t1	AT2G02080	49.658	439	176	15	1	428	78	482	3.21e-113	343
MS.gene34092.t1	AT2G02080	49.658	439	176	15	1	428	78	482	3.21e-113	343
MS.gene34092.t1	AT2G02080	49.658	439	176	15	1	428	78	482	3.21e-113	343
MS.gene34092.t1	AT2G02070	84.568	162	19	2	1	162	76	231	2.41e-97	305
MS.gene34092.t1	AT2G02070	84.568	162	19	2	1	162	76	231	2.41e-97	305
MS.gene34092.t1	AT1G14580	90.141	142	13	1	1	142	77	217	3.38e-95	295
MS.gene34092.t1	AT1G14580	90.141	142	13	1	1	142	77	217	3.38e-95	295

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Find 81 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCCAACAAAGAGCCA+AGG	0.555795	1.2:-74490023	MS.gene34092:CDS
AAAGCACATTCTAAGACTTG+TGG	0.628477	1.2:-74489838	MS.gene34092:CDS
AACAAATAGATTTATATGTG+AGG	0.560724	1.2:-74490124	MS.gene34092:CDS
AACAACATCAATGTCACTTT+TGG	0.258147	1.2:-74487454	MS.gene34092:CDS
AACAACCTGAGTAGTAACCA+AGG	0.667707	1.2:-74487697	MS.gene34092:CDS
AACCATAAGGTTGAAAAGAT+TGG	0.377417	1.2:+74487732	None:intergenic
AAGCATTACTCTCGTAAGCA+TGG	0.570554	1.2:-74489919	MS.gene34092:CDS
AAGCTCTTGAAGGGTCGTGA+TGG	0.580721	1.2:+74489965	None:intergenic
AAGTGTTGTTCAAACTTTGG+TGG	0.596159	1.2:+74487961	None:intergenic
AATATGCTGTTCAATCTGAT+TGG	0.427517	1.2:-74489861	MS.gene34092:CDS

Showing 1 to 10 of 81 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAGTTATGTTCACCTT+TGG	+	chr1.2:74488920-74488939	None:intergenic	30.0%
AAACACAAACTAACAGAGAA+AGG	+	chr1.2:74488107-74488126	None:intergenic	30.0%
AACACAAACTAACAGAGAAA+GGG	+	chr1.2:74488106-74488125	None:intergenic	30.0%
AACCATAAGGTTGAAAAGAT+TGG	+	chr1.2:74489541-74489560	None:intergenic	30.0%
AATATGCTGTTCAATCTGAT+TGG	-	chr1.2:74487409-74487428	MS.gene34092:CDS	30.0%
AATCTTCAACTTCATAGAAG+AGG	-	chr1.2:74487198-74487217	MS.gene34092:CDS	30.0%
AATTAGAGCTGAAAATGAAG+AGG	+	chr1.2:74487859-74487878	None:intergenic	30.0%
AGAGAATATAGATGTGATTG+TGG	-	chr1.2:74487459-74487478	MS.gene34092:CDS	30.0%
ATCAAAGAAAGACCTCAAAT+TGG	-	chr1.2:74488635-74488654	MS.gene34092:intron	30.0%
ATGATCATAAATCAGCTGAT+AGG	-	chr1.2:74489772-74489791	MS.gene34092:intron	30.0%

Showing 1 to 10 of 172 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	74487141	74490151	74487141	ID=MS.gene34092
chr1.2	mRNA	74487141	74490151	74487141	ID=MS.gene34092.t1;Parent=MS.gene34092
chr1.2	exon	74489796	74490151	74489796	ID=MS.gene34092.t1.exon1;Parent=MS.gene34092.t1
chr1.2	CDS	74489796	74490151	74489796	ID=cds.MS.gene34092.t1;Parent=MS.gene34092.t1
chr1.2	exon	74487141	74488194	74487141	ID=MS.gene34092.t1.exon2;Parent=MS.gene34092.t1
chr1.2	CDS	74487141	74488194	74487141	ID=cds.MS.gene34092.t1;Parent=MS.gene34092.t1

Gene Sequence

>MS.gene34092

ATGGCAACAAATAGATTTATATGTGAGGTTTGCAACAAAGGGTTTCAAAGGGAGCAAAATCTTCAACTTCATAGAAGAGGACACAATCTTCCTTGGAAGCTAAAGCAAAAGTCCAACAAAGAGCCAAGGAGAAAGGTTTATTTGTGTCCTGAGCCCACATGCGTCCATCACGACCCTTCAAGAGCTTTAGGAGATCTCACTGGAATTAAAAAGCATTACTCTCGTAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGTACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCTAGGTAACAAACATCAACTTTATATTTATATATCTTCACATCGATGTTAGTCTAATTAATTCACAAATATGAATTCATCACCACGTATATATAATATATGCTACTTTTGCCAAAAGTTAGGGTTACTTATATTGTTTGGTATTGAATATTATTATTTTTTATAGAAGTTAGTGTTGATTATTTTCTTACAACCAATTTTTATTATAAGAATTCGAAAGAGTAAACTAAGTTCTTTTAATCATGTTTTTTTTTTTCATCATCCGATTTGCAAAGAAAATGGTCATAACAATTCGAAAGAGTAAAATTATTGTTTTAACAGTAGATCGAACTCATAGACTCCTTATATATCGTTGTCTTTTTTTCCTCTTCATTTTCAGCTCTAATTTATCTAAATTGAAGTACTCTTTAAACTTTTTTTTTTTTTTTACAAGAAGTACTCTTTAAACTTCTTTACTAAGGAATACCTTTTTCATATAATAAAAGGTGTGTGTACATAATATAAGTTGAAATTTTTCACAATGACATTCAAGTAAAAACACACAAAAGTTAAATTTGAACAACAGTCTCTTTTATGTTCTTATCCCAAAAAAAAGTTAACAAGAGCTTTCACCCTTTCTCTGTTAGTTTGTGTTTGGGTGTTAGAAGGTGTATATTGTATGGCGCAGGAGACTGCATGCACGTGAGTGCACTGTTCAAATGTAGTACAAAATTTGAAATGTTTGAAGGAAAAAAATCAATTTTGGTTCTAGGGAACAGTGCCCATAATCTATTAACATTCACGTGTAGTGAAACAACATTATAACTTTGTTCTCATATGAATTGGAATGGAGATGCTGGGTTTTGTTCTCTTTCTTGTTAGCTATTTCTAGTGTTCAAAATTCAAATACATTTCCATGTTCTTTTCAGCAATGGGCCCTATTCTTCAATTTAATTACCAACAGAAAATTCTCTTCATTAATTGGTCAATCTATATATATAGTCATGTTTGTCATGGATTTGCTAGAAATTATGTGATATAACGAATTCTCTTGGTAGAATATAGACAAGTATTGAGGTTGCTTGCATTTATTGAGTAGGCCCCATATTGAAGTTTTTGAGTATTGACTTTCATCATAGTTGCAAACAATTCTCTCTTTTATTGATCAAAGAAAGACCTCAAATTGGAAGTTTGATTTAGAAATTCTTGGTTTGTTTCATATTTTGGCATAATCCCATGGGCCCTCTACTTCTATTGTAGTTTACTTAATTTCAACTTACTACTAGTTTCAATTAATTCCACTTAAATCAATTAACCTTCTTTTTTTTTCATTTTAATTTGTTACAAGTGGCTACCTTTGTATTTGGTGGGTTTAATTATAATTTATATAATCAATTAGGTTACTCATATTCATTACACAAAAATATGGGATTATAATATGAACTTCCAAAGGTGAACATAACTCTTTTTTGGTAAATTTTAATAAAATATTATATATGTTCTCATTTTTTTATTATTATAAAACTCATTTTTAGTAAAAATGGTAGGGGTCTACATTATACCCACCCAAAAAAAATTGTCAATGATATATATGTTGCTTAATTCTTTGTGATTAATTTTGGTGCAGGCGTGACAGTTTCATCACTCATAGGGCATTTTGTGATGCACTAGCACAAGAGAGTGTATTAAGACACCCTAACCCTTTTGGGAGTACTCATCAATTGTATGCCACAAACCATCACATTAGTTTAGGCCAAATATCCCATCAATTGCAAAATCATCAGAACCAAATTACATCATCCACTAGCAATAACAACATTTTGCGCCTTGGATCAACACCACCAAAGTTTGAACAACACTTAATATCATCACCACCTTTAAATCACTCTTCATCATTTGGACACTCAATTCCATCTTCATCACCATTCTTCAATATGAGTGATATTTCAAATCAATCCTTTGAAGAACAACAATCTCAACAAGGACAATTCTTAAACAAACAACTACATGGTCTAATGCATCTTCCTGATCTTCAAGGCAATACAAATACAAACAATTCAAATTCTTCCAATCTTTTCAACCTTATGGTTCATGATCAATTCAACAACCTGAGTAGTAACCAAGGAACAACACTTTACATTAACAACAACAACCCTTTAAGTGATCATCAAGTTGGTTTTGTCCATTCAATGCAACATGGTCAAAACATGTCTAGTCCTCACATGTCTGCCACTGCATTGCTTCAAAAAGCTTCTCAAATTGGTTCAACTAATTCTACCAACAATAACAAAGGTAGTAATAATGATCATAAATCAGCTGATAGGGACTTTGTTGTGTCTGATCACAACAACATCAATGTCACTTTTGGAAATAGAAGTTCAAGTATGGAAAATGATCATGATGACAACAACGATCTTCATGGATTGATAAACTCTATTGCAAATGGAAACACATCATCCATATTTGGCAATGAAAGCAATCTTAATATGAGATTTGGTGGATCTGATAAATTAACTTTAGATTTTCTTGGTGTTGGAGGAATGGTCAGAAACATGAGTGGTGGATTTTCACAAAGTGAACAACAACGTGACATGATGAATACTAGCATGGCTTCTTTGAATCATGACCTAAAATCAGCACATTCAACTCAACATTTTGGAAGCTCAAATATGTTGCAATGA

Protein sequence

>MS.gene34092.t1

MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVLRHPNPFGSTHQLYATNHHISLGQISHQLQNHQNQITSSTSNNNILRLGSTPPKFEQHLISSPPLNHSSSFGHSIPSSSPFFNMSDISNQSFEEQQSQQGQFLNKQLHGLMHLPDLQGNTNTNNSNSSNLFNLMVHDQFNNLSSNQGTTLYINNNNPLSDHQVGFVHSMQHGQNMSSPHMSATALLQKASQIGSTNSTNNNKGSNNDHKSADRDFVVSDHNNINVTFGNRSSSMENDHDDNNDLHGLINSIANGNTSSIFGNESNLNMRFGGSDKLTLDFLGVGGMVRNMSGGFSQSEQQRDMMNTSMASLNHDLKSAHSTQHFGSSNMLQ