Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34092.t1 | XP_013469433.1 | 94.9 | 470 | 22 | 2 | 1 | 469 | 71 | 539 | 5.90E-241 | 843.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34092.t1 | Q8GYC1 | 46.6 | 436 | 200 | 10 | 1 | 431 | 78 | 485 | 3.8e-79 | 297.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34092.t1 | A0A072VPA1 | 94.9 | 470 | 22 | 2 | 1 | 469 | 71 | 539 | 4.2e-241 | 843.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene34092.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene34092 | 0.833452 | 5.29E-56 | -1.69E-46 |
| MS.gene049609 | MS.gene34092 | 0.828236 | 1.01E-54 | -1.69E-46 |
| MS.gene049611 | MS.gene34092 | -0.800459 | 1.43E-48 | -1.69E-46 |
| MS.gene049805 | MS.gene34092 | 0.806096 | 9.71E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene34092 | 0.827602 | 1.43E-54 | -1.69E-46 |
| MS.gene050323 | MS.gene34092 | 0.822675 | 2.09E-53 | -1.69E-46 |
| MS.gene050380 | MS.gene34092 | -0.823024 | 1.73E-53 | -1.69E-46 |
| MS.gene050381 | MS.gene34092 | -0.806271 | 8.92E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene34092 | 0.80287 | 4.57E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene34092 | 0.804272 | 2.34E-49 | -1.69E-46 |
| MS.gene050538 | MS.gene34092 | 0.802438 | 5.61E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene34092 | 0.856879 | 2.39E-62 | -1.69E-46 |
| MS.gene050772 | MS.gene34092 | 0.812031 | 5.20E-51 | -1.69E-46 |
| MS.gene050800 | MS.gene34092 | -0.813762 | 2.17E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene34092 | 0.811958 | 5.40E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene34092 | 0.864899 | 8.72E-65 | -1.69E-46 |
| MS.gene050871 | MS.gene34092 | 0.868139 | 8.15E-66 | -1.69E-46 |
| MS.gene050950 | MS.gene34092 | 0.844329 | 8.09E-59 | -1.69E-46 |
| MS.gene05104 | MS.gene34092 | -0.807613 | 4.64E-50 | -1.69E-46 |
| MS.gene051113 | MS.gene34092 | -0.808192 | 3.50E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene34092 | 0.839739 | 1.32E-57 | -1.69E-46 |
| MS.gene051838 | MS.gene34092 | 0.848479 | 5.97E-60 | -1.69E-46 |
| MS.gene051858 | MS.gene34092 | 0.809643 | 1.71E-50 | -1.69E-46 |
| MS.gene051874 | MS.gene34092 | 0.800294 | 1.54E-48 | -1.69E-46 |
| MS.gene052164 | MS.gene34092 | 0.845438 | 4.06E-59 | -1.69E-46 |
| MS.gene052346 | MS.gene34092 | 0.809515 | 1.82E-50 | -1.69E-46 |
| MS.gene05234 | MS.gene34092 | -0.828085 | 1.09E-54 | -1.69E-46 |
| MS.gene052501 | MS.gene34092 | 0.813257 | 2.80E-51 | -1.69E-46 |
| MS.gene052503 | MS.gene34092 | 0.838725 | 2.42E-57 | -1.69E-46 |
| MS.gene052505 | MS.gene34092 | 0.811432 | 7.02E-51 | -1.69E-46 |
| MS.gene052615 | MS.gene34092 | 0.825211 | 5.30E-54 | -1.69E-46 |
| MS.gene052823 | MS.gene34092 | 0.842352 | 2.73E-58 | -1.69E-46 |
| MS.gene052825 | MS.gene34092 | 0.846516 | 2.07E-59 | -1.69E-46 |
| MS.gene052966 | MS.gene34092 | 0.805365 | 1.38E-49 | -1.69E-46 |
| MS.gene052982 | MS.gene34092 | 0.800511 | 1.39E-48 | -1.69E-46 |
| MS.gene053203 | MS.gene34092 | 0.836038 | 1.18E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene34092 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene34092 | -0.810733 | 9.95E-51 | -1.69E-46 |
| MS.gene053421 | MS.gene34092 | -0.83843 | 2.89E-57 | -1.69E-46 |
| MS.gene053436 | MS.gene34092 | 0.819549 | 1.10E-52 | -1.69E-46 |
| MS.gene053479 | MS.gene34092 | 0.806937 | 6.45E-50 | -1.69E-46 |
| MS.gene053480 | MS.gene34092 | 0.80544 | 1.33E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene34092 | 0.837977 | 3.78E-57 | -1.69E-46 |
| MS.gene053626 | MS.gene34092 | 0.832093 | 1.15E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene34092 | 0.803406 | 3.54E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene34092 | 0.845329 | 4.35E-59 | -1.69E-46 |
| MS.gene054003 | MS.gene34092 | 0.847112 | 1.42E-59 | -1.69E-46 |
| MS.gene054408 | MS.gene34092 | 0.822806 | 1.95E-53 | -1.69E-46 |
| MS.gene054595 | MS.gene34092 | 0.812412 | 4.30E-51 | -1.69E-46 |
| MS.gene054706 | MS.gene34092 | -0.842332 | 2.76E-58 | -1.69E-46 |
| MS.gene054707 | MS.gene34092 | -0.820136 | 8.05E-53 | -1.69E-46 |
| MS.gene05470 | MS.gene34092 | 0.805532 | 1.28E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene34092 | 0.823012 | 1.74E-53 | -1.69E-46 |
| MS.gene05494 | MS.gene34092 | 0.839029 | 2.02E-57 | -1.69E-46 |
| MS.gene05505 | MS.gene34092 | 0.819666 | 1.03E-52 | -1.69E-46 |
| MS.gene055224 | MS.gene34092 | 0.804792 | 1.82E-49 | -1.69E-46 |
| MS.gene055486 | MS.gene34092 | 0.822794 | 1.96E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene34092 | 0.812498 | 4.11E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene34092 | 0.851546 | 8.27E-61 | -1.69E-46 |
| MS.gene05589 | MS.gene34092 | 0.816669 | 4.91E-52 | -1.69E-46 |
| MS.gene055909 | MS.gene34092 | 0.807774 | 4.29E-50 | -1.69E-46 |
| MS.gene055911 | MS.gene34092 | 0.80347 | 3.43E-49 | -1.69E-46 |
| MS.gene055941 | MS.gene34092 | 0.82404 | 1.00E-53 | -1.69E-46 |
| MS.gene056046 | MS.gene34092 | 0.814883 | 1.23E-51 | -1.69E-46 |
| MS.gene056166 | MS.gene34092 | 0.815515 | 8.89E-52 | -1.69E-46 |
| MS.gene056313 | MS.gene34092 | -0.8037 | 3.08E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene34092 | 0.840297 | 9.46E-58 | -1.69E-46 |
| MS.gene056448 | MS.gene34092 | 0.85518 | 7.50E-62 | -1.69E-46 |
| MS.gene056504 | MS.gene34092 | 0.822983 | 1.77E-53 | -1.69E-46 |
| MS.gene057048 | MS.gene34092 | 0.838199 | 3.31E-57 | -1.69E-46 |
| MS.gene057173 | MS.gene34092 | -0.850378 | 1.77E-60 | -1.69E-46 |
| MS.gene057261 | MS.gene34092 | -0.801262 | 9.78E-49 | -1.69E-46 |
| MS.gene05726 | MS.gene34092 | -0.814136 | 1.80E-51 | -1.69E-46 |
| MS.gene057658 | MS.gene34092 | 0.820461 | 6.78E-53 | -1.69E-46 |
| MS.gene057857 | MS.gene34092 | 0.807305 | 5.39E-50 | -1.69E-46 |
| MS.gene05787 | MS.gene34092 | 0.817587 | 3.05E-52 | -1.69E-46 |
| MS.gene058130 | MS.gene34092 | 0.819955 | 8.85E-53 | -1.69E-46 |
| MS.gene058157 | MS.gene34092 | 0.948764 | 4.93E-107 | -1.69E-46 |
| MS.gene058170 | MS.gene34092 | -0.816884 | 4.39E-52 | -1.69E-46 |
| MS.gene058174 | MS.gene34092 | -0.81476 | 1.31E-51 | -1.69E-46 |
| MS.gene058338 | MS.gene34092 | 0.807497 | 4.91E-50 | -1.69E-46 |
| MS.gene058376 | MS.gene34092 | 0.840004 | 1.13E-57 | -1.69E-46 |
| MS.gene05837 | MS.gene34092 | 0.855566 | 5.79E-62 | -1.69E-46 |
| MS.gene058838 | MS.gene34092 | 0.828517 | 8.60E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene34092 | 0.825878 | 3.69E-54 | -1.69E-46 |
| MS.gene059303 | MS.gene34092 | 0.805367 | 1.38E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene34092 | 0.803385 | 3.58E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene34092 | 0.814411 | 1.56E-51 | -1.69E-46 |
| MS.gene059667 | MS.gene34092 | 0.815061 | 1.12E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene34092 | 0.84132 | 5.10E-58 | -1.69E-46 |
| MS.gene059801 | MS.gene34092 | 0.805328 | 1.41E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene34092 | 0.806516 | 7.92E-50 | -1.69E-46 |
| MS.gene05995 | MS.gene34092 | 0.804404 | 2.20E-49 | -1.69E-46 |
| MS.gene05996 | MS.gene34092 | 0.807369 | 5.23E-50 | -1.69E-46 |
| MS.gene06000 | MS.gene34092 | 0.810458 | 1.14E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene34092 | 0.84273 | 2.16E-58 | -1.69E-46 |
| MS.gene060595 | MS.gene34092 | -0.804874 | 1.75E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene34092 | 0.816085 | 6.63E-52 | -1.69E-46 |
| MS.gene060778 | MS.gene34092 | 0.837507 | 4.99E-57 | -1.69E-46 |
| MS.gene06077 | MS.gene34092 | 0.829007 | 6.55E-55 | -1.69E-46 |
| MS.gene060837 | MS.gene34092 | 0.809214 | 2.11E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene34092 | 0.80939 | 1.94E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34092.t1 | MTR_1g094115 | 96.170 | 470 | 16 | 2 | 1 | 469 | 71 | 539 | 0.0 | 928 |
| MS.gene34092.t1 | MTR_1g094115 | 95.923 | 466 | 17 | 2 | 5 | 469 | 58 | 522 | 0.0 | 872 |
| MS.gene34092.t1 | MTR_1g112270 | 46.263 | 495 | 207 | 13 | 1 | 454 | 68 | 544 | 5.19e-114 | 347 |
| MS.gene34092.t1 | MTR_1g112270 | 46.450 | 493 | 205 | 13 | 1 | 452 | 79 | 553 | 6.95e-114 | 347 |
| MS.gene34092.t1 | MTR_8g017210 | 90.580 | 138 | 13 | 0 | 1 | 138 | 86 | 223 | 2.00e-94 | 295 |
| MS.gene34092.t1 | MTR_2g099990 | 82.468 | 154 | 24 | 1 | 1 | 151 | 1 | 154 | 1.04e-93 | 289 |
| MS.gene34092.t1 | MTR_2g099990 | 82.468 | 154 | 24 | 1 | 1 | 151 | 70 | 223 | 1.66e-93 | 291 |
| MS.gene34092.t1 | MTR_4g059870 | 41.000 | 500 | 190 | 20 | 1 | 462 | 62 | 494 | 8.42e-93 | 290 |
| MS.gene34092.t1 | MTR_1g016010 | 77.215 | 158 | 34 | 2 | 1 | 156 | 65 | 222 | 2.60e-88 | 277 |
| MS.gene34092.t1 | MTR_2g090745 | 82.609 | 138 | 24 | 0 | 1 | 138 | 31 | 168 | 8.80e-87 | 272 |
| MS.gene34092.t1 | MTR_2g093960 | 81.295 | 139 | 25 | 1 | 1 | 138 | 56 | 194 | 1.50e-83 | 263 |
| MS.gene34092.t1 | MTR_2g017720 | 73.267 | 101 | 22 | 1 | 1 | 101 | 337 | 432 | 2.61e-45 | 164 |
| MS.gene34092.t1 | MTR_3g102000 | 64.646 | 99 | 28 | 2 | 4 | 98 | 36 | 131 | 1.52e-36 | 134 |
| MS.gene34092.t1 | MTR_1g093095 | 35.915 | 142 | 76 | 5 | 1 | 129 | 110 | 249 | 2.01e-19 | 89.0 |
| MS.gene34092.t1 | MTR_5g030560 | 80.645 | 31 | 6 | 0 | 1 | 31 | 30 | 60 | 5.99e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34092.t1 | AT2G02080 | 49.886 | 439 | 175 | 15 | 1 | 428 | 1 | 405 | 7.61e-114 | 342 |
| MS.gene34092.t1 | AT2G02080 | 49.886 | 439 | 175 | 15 | 1 | 428 | 1 | 405 | 7.61e-114 | 342 |
| MS.gene34092.t1 | AT2G02080 | 49.658 | 439 | 176 | 15 | 1 | 428 | 78 | 482 | 3.21e-113 | 343 |
| MS.gene34092.t1 | AT2G02080 | 49.658 | 439 | 176 | 15 | 1 | 428 | 78 | 482 | 3.21e-113 | 343 |
| MS.gene34092.t1 | AT2G02080 | 49.658 | 439 | 176 | 15 | 1 | 428 | 78 | 482 | 3.21e-113 | 343 |
| MS.gene34092.t1 | AT2G02080 | 49.658 | 439 | 176 | 15 | 1 | 428 | 78 | 482 | 3.21e-113 | 343 |
| MS.gene34092.t1 | AT2G02070 | 84.568 | 162 | 19 | 2 | 1 | 162 | 76 | 231 | 2.41e-97 | 305 |
| MS.gene34092.t1 | AT2G02070 | 84.568 | 162 | 19 | 2 | 1 | 162 | 76 | 231 | 2.41e-97 | 305 |
| MS.gene34092.t1 | AT1G14580 | 90.141 | 142 | 13 | 1 | 1 | 142 | 77 | 217 | 3.38e-95 | 295 |
| MS.gene34092.t1 | AT1G14580 | 90.141 | 142 | 13 | 1 | 1 | 142 | 77 | 217 | 3.38e-95 | 295 |
| MS.gene34092.t1 | AT1G14580 | 90.141 | 142 | 13 | 1 | 1 | 142 | 91 | 231 | 4.35e-95 | 295 |
| MS.gene34092.t1 | AT3G50700 | 84.397 | 141 | 22 | 0 | 1 | 141 | 58 | 198 | 3.67e-92 | 287 |
| MS.gene34092.t1 | AT1G55110 | 85.616 | 146 | 20 | 1 | 1 | 145 | 87 | 232 | 7.96e-92 | 286 |
| MS.gene34092.t1 | AT1G55110 | 85.616 | 146 | 20 | 1 | 1 | 145 | 87 | 232 | 7.96e-92 | 286 |
| MS.gene34092.t1 | AT1G55110 | 85.616 | 146 | 20 | 1 | 1 | 145 | 87 | 232 | 7.96e-92 | 286 |
| MS.gene34092.t1 | AT5G66730 | 85.106 | 141 | 21 | 0 | 1 | 141 | 56 | 196 | 2.61e-91 | 286 |
| MS.gene34092.t1 | AT3G45260 | 68.000 | 200 | 55 | 2 | 1 | 191 | 63 | 262 | 5.86e-91 | 284 |
| MS.gene34092.t1 | AT3G45260 | 68.000 | 200 | 55 | 2 | 1 | 191 | 63 | 262 | 5.86e-91 | 284 |
| MS.gene34092.t1 | AT1G03840 | 83.333 | 138 | 23 | 0 | 1 | 138 | 63 | 200 | 1.16e-88 | 280 |
| MS.gene34092.t1 | AT1G03840 | 83.333 | 138 | 23 | 0 | 1 | 138 | 65 | 202 | 1.43e-88 | 280 |
| MS.gene34092.t1 | AT5G03150 | 80.128 | 156 | 26 | 2 | 1 | 151 | 77 | 232 | 1.06e-87 | 277 |
| MS.gene34092.t1 | AT3G13810 | 86.331 | 139 | 18 | 1 | 1 | 138 | 81 | 219 | 1.13e-87 | 277 |
| MS.gene34092.t1 | AT3G13810 | 86.331 | 139 | 18 | 1 | 1 | 138 | 75 | 213 | 1.16e-87 | 277 |
| MS.gene34092.t1 | AT3G13810 | 86.331 | 139 | 18 | 1 | 1 | 138 | 89 | 227 | 1.23e-87 | 277 |
| MS.gene34092.t1 | AT3G13810 | 86.331 | 139 | 18 | 1 | 1 | 138 | 94 | 232 | 1.47e-87 | 277 |
| MS.gene34092.t1 | AT3G13810 | 86.331 | 139 | 18 | 1 | 1 | 138 | 94 | 232 | 1.47e-87 | 277 |
| MS.gene34092.t1 | AT3G13810 | 86.331 | 139 | 18 | 1 | 1 | 138 | 95 | 233 | 1.70e-87 | 277 |
| MS.gene34092.t1 | AT5G44160 | 84.058 | 138 | 22 | 0 | 1 | 138 | 22 | 159 | 2.61e-87 | 274 |
| MS.gene34092.t1 | AT5G44160 | 84.058 | 138 | 22 | 0 | 1 | 138 | 61 | 198 | 3.60e-87 | 275 |
| MS.gene34092.t1 | AT5G60470 | 76.667 | 150 | 32 | 2 | 1 | 147 | 59 | 208 | 9.54e-86 | 270 |
| MS.gene34092.t1 | AT4G02670 | 76.623 | 154 | 26 | 2 | 1 | 144 | 79 | 232 | 1.98e-85 | 268 |
| MS.gene34092.t1 | AT4G02670 | 76.623 | 154 | 26 | 2 | 1 | 144 | 77 | 230 | 2.15e-85 | 268 |
| MS.gene34092.t1 | AT5G60470 | 76.667 | 150 | 32 | 2 | 1 | 147 | 68 | 217 | 2.74e-85 | 270 |
| MS.gene34092.t1 | AT5G60470 | 76.667 | 150 | 32 | 2 | 1 | 147 | 64 | 213 | 3.34e-85 | 269 |
| MS.gene34092.t1 | AT1G25250 | 44.248 | 226 | 98 | 6 | 1 | 222 | 34 | 235 | 2.89e-59 | 199 |
| MS.gene34092.t1 | AT1G25250 | 44.248 | 226 | 98 | 6 | 1 | 222 | 57 | 258 | 4.40e-59 | 199 |
| MS.gene34092.t1 | AT1G68130 | 48.039 | 204 | 87 | 5 | 1 | 202 | 65 | 251 | 4.95e-59 | 200 |
| MS.gene34092.t1 | AT2G01940 | 62.687 | 134 | 48 | 2 | 1 | 132 | 68 | 201 | 1.35e-57 | 197 |
| MS.gene34092.t1 | AT2G01940 | 61.481 | 135 | 49 | 3 | 1 | 132 | 68 | 202 | 4.81e-54 | 187 |
| MS.gene34092.t1 | AT1G68130 | 46.703 | 182 | 78 | 5 | 23 | 202 | 1 | 165 | 5.65e-46 | 163 |
| MS.gene34092.t1 | AT1G25250 | 42.647 | 204 | 89 | 6 | 23 | 222 | 1 | 180 | 6.28e-46 | 162 |
| MS.gene34092.t1 | AT2G01940 | 62.500 | 112 | 40 | 2 | 23 | 132 | 1 | 112 | 3.68e-44 | 159 |
| MS.gene34092.t1 | AT1G34370 | 34.568 | 162 | 92 | 4 | 1 | 148 | 29 | 190 | 6.54e-21 | 93.2 |
| MS.gene34092.t1 | AT1G34370 | 34.568 | 162 | 92 | 4 | 1 | 148 | 239 | 400 | 8.39e-21 | 95.5 |
| MS.gene34092.t1 | AT1G34370 | 34.568 | 162 | 92 | 4 | 1 | 148 | 239 | 400 | 8.39e-21 | 95.5 |
| MS.gene34092.t1 | AT5G22890 | 32.168 | 143 | 83 | 3 | 1 | 129 | 212 | 354 | 1.56e-19 | 90.5 |
| MS.gene34092.t1 | AT1G13290 | 36.000 | 150 | 82 | 6 | 1 | 138 | 96 | 243 | 3.61e-19 | 88.2 |
| MS.gene34092.t1 | AT3G20880 | 34.783 | 138 | 80 | 5 | 1 | 129 | 251 | 387 | 1.45e-18 | 88.2 |
| MS.gene34092.t1 | AT1G51220 | 31.677 | 161 | 96 | 6 | 1 | 152 | 173 | 328 | 1.55e-18 | 87.0 |
| MS.gene34092.t1 | AT3G57670 | 35.971 | 139 | 77 | 6 | 1 | 129 | 212 | 348 | 3.15e-18 | 86.7 |
| MS.gene34092.t1 | AT1G08290 | 37.500 | 136 | 72 | 6 | 5 | 129 | 179 | 312 | 1.41e-17 | 84.3 |
| MS.gene34092.t1 | AT1G34790 | 38.806 | 134 | 70 | 6 | 6 | 129 | 145 | 276 | 2.06e-17 | 83.2 |
Find 81 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAACTTGATGATCACTTAA+AGG | 0.176750 | 1.2:+74487646 | None:intergenic |
| ATTGCTTTCATTGCCAAATA+TGG | 0.188179 | 1.2:+74487342 | None:intergenic |
| TTTGCAATTGATGGGATATT+TGG | 0.199708 | 1.2:+74488046 | None:intergenic |
| GCACATTCAACTCAACATTT+TGG | 0.223217 | 1.2:-74487163 | MS.gene34092:CDS |
| AACAACATCAATGTCACTTT+TGG | 0.258147 | 1.2:-74487454 | MS.gene34092:CDS |
| AATGATGAAGAGTGATTTAA+AGG | 0.258726 | 1.2:+74487925 | None:intergenic |
| GGAAACACATCATCCATATT+TGG | 0.261465 | 1.2:-74487355 | MS.gene34092:CDS |
| TGCTAGTGGATGATGTAATT+TGG | 0.279783 | 1.2:+74488013 | None:intergenic |
| TGGAAATAGAAGTTCAAGTA+TGG | 0.282481 | 1.2:-74487434 | MS.gene34092:CDS |
| CTTTCTCCTTGGCTCTTTGT+TGG | 0.310223 | 1.2:+74490017 | None:intergenic |
| TTAAATCACTCTTCATCATT+TGG | 0.318218 | 1.2:-74487922 | MS.gene34092:CDS |
| TTAAGACACCCTAACCCTTT+TGG | 0.323474 | 1.2:-74488114 | MS.gene34092:CDS |
| CACGACCCTTCAAGAGCTTT+AGG | 0.336517 | 1.2:-74489961 | MS.gene34092:CDS |
| AGCAATCTTAATATGAGATT+TGG | 0.345761 | 1.2:-74487325 | MS.gene34092:CDS |
| GATGACAACAACGATCTTCA+TGG | 0.372227 | 1.2:-74487400 | MS.gene34092:CDS |
| CAACTTGATGATCACTTAAA+GGG | 0.376548 | 1.2:+74487647 | None:intergenic |
| AACCATAAGGTTGAAAAGAT+TGG | 0.377417 | 1.2:+74487732 | None:intergenic |
| ACAAACCATCACATTAGTTT+AGG | 0.387648 | 1.2:-74488069 | MS.gene34092:CDS |
| ATGATCATAAATCAGCTGAT+AGG | 0.388164 | 1.2:-74487498 | MS.gene34092:CDS |
| ATTACTACCTTTGTTATTGT+TGG | 0.391654 | 1.2:+74487522 | None:intergenic |
| TGAGTACTCCCAAAAGGGTT+AGG | 0.396876 | 1.2:+74488105 | None:intergenic |
| TTTGTATTGCCTTGAAGATC+AGG | 0.407490 | 1.2:+74487775 | None:intergenic |
| TTGATAAACTCTATTGCAAA+TGG | 0.417216 | 1.2:-74487376 | MS.gene34092:CDS |
| GTGACAGTTTCATCACTCAT+AGG | 0.424200 | 1.2:-74488170 | MS.gene34092:CDS |
| TTTGACCATGTTGCATTGAA+TGG | 0.424923 | 1.2:+74487617 | None:intergenic |
| AATATGCTGTTCAATCTGAT+TGG | 0.427517 | 1.2:-74489861 | MS.gene34092:CDS |
| ATGCATCTTCCTGATCTTCA+AGG | 0.433107 | 1.2:-74487784 | MS.gene34092:CDS |
| GCTCAAATATGTTGCAATGA+AGG | 0.444416 | 1.2:-74487138 | None:intergenic |
| TTGAGATTGTTGTTCTTCAA+AGG | 0.461712 | 1.2:+74487843 | None:intergenic |
| CACAAATAAACCTTTCTCCT+TGG | 0.464750 | 1.2:+74490006 | None:intergenic |
| TTGTTCCTTGGTTACTACTC+AGG | 0.465952 | 1.2:+74487692 | None:intergenic |
| TATGTGAGGTTTGCAACAAA+GGG | 0.467995 | 1.2:-74490110 | MS.gene34092:CDS |
| TGATGGACGCATGTGGGCTC+AGG | 0.479979 | 1.2:+74489982 | None:intergenic |
| GAAGAGGACACAATCTTCCT+TGG | 0.488329 | 1.2:-74490056 | MS.gene34092:CDS |
| AATTGATGAGTACTCCCAAA+AGG | 0.490054 | 1.2:+74488099 | None:intergenic |
| CCTTTAAGTGATCATCAAGT+TGG | 0.496965 | 1.2:-74487646 | MS.gene34092:CDS |
| CAACAAAGAGCCAAGGAGAA+AGG | 0.497525 | 1.2:-74490016 | MS.gene34092:CDS |
| TAAACTAATGTGATGGTTTG+TGG | 0.499948 | 1.2:+74488071 | None:intergenic |
| TGATCATAAATCAGCTGATA+GGG | 0.500020 | 1.2:-74487497 | MS.gene34092:CDS |
| ATTAAGTGTTGTTCAAACTT+TGG | 0.503007 | 1.2:+74487958 | None:intergenic |
| TGAATTGATCATGAACCATA+AGG | 0.503794 | 1.2:+74487719 | None:intergenic |
| AATCTTAATATGAGATTTGG+TGG | 0.509729 | 1.2:-74487322 | MS.gene34092:CDS |
| CAAAATGTTGTTATTGCTAG+TGG | 0.510794 | 1.2:+74487999 | None:intergenic |
| GAGTACTCCCAAAAGGGTTA+GGG | 0.513767 | 1.2:+74488106 | None:intergenic |
| TTGAAGAATGGTGATGAAGA+TGG | 0.514253 | 1.2:+74487889 | None:intergenic |
| ATATGTGAGGTTTGCAACAA+AGG | 0.517578 | 1.2:-74490111 | MS.gene34092:CDS |
| TAATGTAAAGTGTTGTTCCT+TGG | 0.521540 | 1.2:+74487680 | None:intergenic |
| TTTGCAACAAAGGGTTTCAA+AGG | 0.521693 | 1.2:-74490101 | MS.gene34092:CDS |
| TTGCAACAAAGGGTTTCAAA+GGG | 0.525797 | 1.2:-74490100 | MS.gene34092:CDS |
| ATTGATGAGTACTCCCAAAA+GGG | 0.530292 | 1.2:+74488100 | None:intergenic |
| ATTGTGGCACCCTCTTCTCT+AGG | 0.536248 | 1.2:-74489795 | MS.gene34092:intron |
| ATATCACTCATATTGAAGAA+TGG | 0.537313 | 1.2:+74487877 | None:intergenic |
| AGATCTCCTAAAGCTCTTGA+AGG | 0.547138 | 1.2:+74489955 | None:intergenic |
| ACTTTGGTGGTGTTGATCCA+AGG | 0.547369 | 1.2:+74487974 | None:intergenic |
| GTAAGCATGGTGAGAAGAAG+TGG | 0.548240 | 1.2:-74489906 | MS.gene34092:CDS |
| AAAAGTCCAACAAAGAGCCA+AGG | 0.555795 | 1.2:-74490023 | MS.gene34092:CDS |
| AATCTTCAACTTCATAGAAG+AGG | 0.557392 | 1.2:-74490072 | MS.gene34092:CDS |
| AACAAATAGATTTATATGTG+AGG | 0.560724 | 1.2:-74490124 | MS.gene34092:CDS |
| TTTGGCCTAAACTAATGTGA+TGG | 0.560847 | 1.2:+74488064 | None:intergenic |
| AAGCATTACTCTCGTAAGCA+TGG | 0.570554 | 1.2:-74489919 | MS.gene34092:CDS |
| ATGTTTGTTACCTAGAGAAG+AGG | 0.572256 | 1.2:+74489785 | None:intergenic |
| AAGCTCTTGAAGGGTCGTGA+TGG | 0.580721 | 1.2:+74489965 | None:intergenic |
| TTCTTAAACAAACAACTACA+TGG | 0.582618 | 1.2:-74487811 | MS.gene34092:CDS |
| TGACAGTTTCATCACTCATA+GGG | 0.582640 | 1.2:-74488169 | MS.gene34092:CDS |
| TGTTTGTTACCTAGAGAAGA+GGG | 0.585590 | 1.2:+74489786 | None:intergenic |
| AGAGAATATAGATGTGATTG+TGG | 0.589973 | 1.2:-74489811 | MS.gene34092:CDS |
| AGAGCTTTAGGAGATCTCAC+TGG | 0.591272 | 1.2:-74489949 | MS.gene34092:CDS |
| AAGTGTTGTTCAAACTTTGG+TGG | 0.596159 | 1.2:+74487961 | None:intergenic |
| ATGGTCAGAAACATGAGTGG+TGG | 0.622609 | 1.2:-74487259 | MS.gene34092:CDS |
| TTTGTCCATTCAATGCAACA+TGG | 0.623181 | 1.2:-74487622 | MS.gene34092:CDS |
| AAAGCACATTCTAAGACTTG+TGG | 0.628477 | 1.2:-74489838 | MS.gene34092:CDS |
| AGGGTCGTGATGGACGCATG+TGG | 0.629562 | 1.2:+74489975 | None:intergenic |
| GATCTCCTAAAGCTCTTGAA+GGG | 0.629745 | 1.2:+74489956 | None:intergenic |
| GGGTCGTGATGGACGCATGT+GGG | 0.641981 | 1.2:+74489976 | None:intergenic |
| TGACATGATGAATACTAGCA+TGG | 0.643758 | 1.2:-74487212 | MS.gene34092:CDS |
| AATTCTACCAACAATAACAA+AGG | 0.649478 | 1.2:-74487529 | MS.gene34092:CDS |
| GATGAAGAGTGATTTAAAGG+TGG | 0.652236 | 1.2:+74487928 | None:intergenic |
| AACAACCTGAGTAGTAACCA+AGG | 0.667707 | 1.2:-74487697 | MS.gene34092:CDS |
| AATGCAGTGGCAGACATGTG+AGG | 0.674772 | 1.2:+74487583 | None:intergenic |
| GAAGAACAACAATCTCAACA+AGG | 0.728667 | 1.2:-74487838 | MS.gene34092:CDS |
| GGAATGGTCAGAAACATGAG+TGG | 0.767875 | 1.2:-74487262 | MS.gene34092:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATGAAAAAAAAAGA+AGG | + | chr1.2:74488789-74488808 | None:intergenic | 10.0% |
| !! | ATATTCATTACACAAAAATA+TGG | - | chr1.2:74488877-74488896 | MS.gene34092:intron | 15.0% |
| !! | CGAATTCTTATAATAAAAAT+TGG | + | chr1.2:74487688-74487707 | None:intergenic | 15.0% |
| !! | TATTCATTACACAAAAATAT+GGG | - | chr1.2:74488878-74488897 | MS.gene34092:intron | 15.0% |
| !!! | AAACTCATTTTTAGTAAAAA+TGG | - | chr1.2:74488992-74489011 | MS.gene34092:intron | 15.0% |
| !!! | AAATTAACTTTAGATTTTCT+TGG | - | chr1.2:74489978-74489997 | MS.gene34092:CDS | 15.0% |
| !!! | ATATCATTGACAATTTTTTT+TGG | + | chr1.2:74489040-74489059 | None:intergenic | 15.0% |
| !!! | TAATTCTTTGTGATTAATTT+TGG | - | chr1.2:74489070-74489089 | MS.gene34092:intron | 15.0% |
| !!! | TACCTTTTTCATATAATAAA+AGG | - | chr1.2:74487955-74487974 | MS.gene34092:CDS | 15.0% |
| !!! | TATCATTGACAATTTTTTTT+GGG | + | chr1.2:74489039-74489058 | None:intergenic | 15.0% |
| !! | AAAAAAGACAACGATATATA+AGG | + | chr1.2:74487835-74487854 | None:intergenic | 20.0% |
| !! | AACAAATAGATTTATATGTG+AGG | - | chr1.2:74487146-74487165 | MS.gene34092:CDS | 20.0% |
| !! | AATACTCAAAAACTTCAATA+TGG | + | chr1.2:74488576-74488595 | None:intergenic | 20.0% |
| !! | AGAAAATTCTCTTCATTAAT+TGG | - | chr1.2:74488433-74488452 | MS.gene34092:intron | 20.0% |
| !! | ATACTCAAAAACTTCAATAT+GGG | + | chr1.2:74488575-74488594 | None:intergenic | 20.0% |
| !! | ATTATAATATGAACTTCCAA+AGG | - | chr1.2:74488901-74488920 | MS.gene34092:intron | 20.0% |
| !! | GGTAATTAAATTGAAGAATA+GGG | + | chr1.2:74488410-74488429 | None:intergenic | 20.0% |
| !! | TAGCATATATTATATATACG+TGG | + | chr1.2:74487577-74487596 | None:intergenic | 20.0% |
| !! | TGGTAATTAAATTGAAGAAT+AGG | + | chr1.2:74488411-74488430 | None:intergenic | 20.0% |
| !!! | AAAAAATCAATTTTGGTTCT+AGG | - | chr1.2:74488221-74488240 | MS.gene34092:intron | 20.0% |
| !!! | AAAAATCAATTTTGGTTCTA+GGG | - | chr1.2:74488222-74488241 | MS.gene34092:intron | 20.0% |
| !!! | AAGTTTGATTTAGAAATTCT+TGG | - | chr1.2:74488658-74488677 | MS.gene34092:intron | 20.0% |
| !!! | ACAAAATTTGAAATGTTTGA+AGG | - | chr1.2:74488197-74488216 | MS.gene34092:intron | 20.0% |
| !!! | ATTTTTAGTAAAAATGGTAG+GGG | - | chr1.2:74488998-74489017 | MS.gene34092:intron | 20.0% |
| !!! | CACCTTTTATTATATGAAAA+AGG | + | chr1.2:74487960-74487979 | None:intergenic | 20.0% |
| !!! | CATTTTTAGTAAAAATGGTA+GGG | - | chr1.2:74488997-74489016 | MS.gene34092:intron | 20.0% |
| !!! | TCATTTTAATTTGTTACAAG+TGG | - | chr1.2:74488799-74488818 | MS.gene34092:intron | 20.0% |
| !!! | TCATTTTTAGTAAAAATGGT+AGG | - | chr1.2:74488996-74489015 | MS.gene34092:intron | 20.0% |
| !!! | TGAAGGAAAAAAATCAATTT+TGG | - | chr1.2:74488214-74488233 | MS.gene34092:intron | 20.0% |
| ! | AACTTTGTTCTCATATGAAT+TGG | - | chr1.2:74488294-74488313 | MS.gene34092:intron | 25.0% |
| ! | AATCTTAATATGAGATTTGG+TGG | - | chr1.2:74489948-74489967 | MS.gene34092:CDS | 25.0% |
| ! | AATGATGAAGAGTGATTTAA+AGG | + | chr1.2:74489348-74489367 | None:intergenic | 25.0% |
| ! | AATTCTACCAACAATAACAA+AGG | - | chr1.2:74489741-74489760 | MS.gene34092:intron | 25.0% |
| ! | ACGTGAATGTTAATAGATTA+TGG | + | chr1.2:74488256-74488275 | None:intergenic | 25.0% |
| ! | AGCAATCTTAATATGAGATT+TGG | - | chr1.2:74489945-74489964 | MS.gene34092:CDS | 25.0% |
| ! | ATATATAGTCATGTTTGTCA+TGG | - | chr1.2:74488465-74488484 | MS.gene34092:intron | 25.0% |
| ! | ATATCACTCATATTGAAGAA+TGG | + | chr1.2:74489396-74489415 | None:intergenic | 25.0% |
| ! | CGTGAATGTTAATAGATTAT+GGG | + | chr1.2:74488255-74488274 | None:intergenic | 25.0% |
| ! | CTCTTTAAACTTCTTTACTA+AGG | - | chr1.2:74487930-74487949 | MS.gene34092:CDS | 25.0% |
| ! | TAAACTACAATAGAAGTAGA+GGG | + | chr1.2:74488715-74488734 | None:intergenic | 25.0% |
| ! | TAAATCAAACTTCCAATTTG+AGG | + | chr1.2:74488650-74488669 | None:intergenic | 25.0% |
| ! | TACTCAAAAACTTCAATATG+GGG | + | chr1.2:74488574-74488593 | None:intergenic | 25.0% |
| ! | TTAAATCACTCTTCATCATT+TGG | - | chr1.2:74489348-74489367 | MS.gene34092:intron | 25.0% |
| ! | TTAGGGTTACTTATATTGTT+TGG | - | chr1.2:74487610-74487629 | MS.gene34092:CDS | 25.0% |
| ! | TTCTTAAACAAACAACTACA+TGG | - | chr1.2:74489459-74489478 | MS.gene34092:intron | 25.0% |
| ! | TTGATAAACTCTATTGCAAA+TGG | - | chr1.2:74489894-74489913 | MS.gene34092:CDS | 25.0% |
| !! | AGAAGGTTAATTGATTTAAG+TGG | + | chr1.2:74488772-74488791 | None:intergenic | 25.0% |
| !! | ATATAAGTAACCCTAACTTT+TGG | + | chr1.2:74487606-74487625 | None:intergenic | 25.0% |
| !! | ATTAAGTGTTGTTCAAACTT+TGG | + | chr1.2:74489315-74489334 | None:intergenic | 25.0% |
| !! | TAATGAAGAGAATTTTCTGT+TGG | + | chr1.2:74488431-74488450 | None:intergenic | 25.0% |
| !! | TAGAATATAGACAAGTATTG+AGG | - | chr1.2:74488526-74488545 | MS.gene34092:intron | 25.0% |
| !!! | AGCTCTTGTTAACTTTTTTT+TGG | + | chr1.2:74488079-74488098 | None:intergenic | 25.0% |
| !!! | ATTACTACCTTTGTTATTGT+TGG | + | chr1.2:74489751-74489770 | None:intergenic | 25.0% |
| !!! | ATTGACAATTTTTTTTGGGT+GGG | + | chr1.2:74489035-74489054 | None:intergenic | 25.0% |
| !!! | GCTCTTGTTAACTTTTTTTT+GGG | + | chr1.2:74488078-74488097 | None:intergenic | 25.0% |
| !!! | TCTTGGTTTGTTTCATATTT+TGG | - | chr1.2:74488675-74488694 | MS.gene34092:intron | 25.0% |
| AAAAGAGTTATGTTCACCTT+TGG | + | chr1.2:74488920-74488939 | None:intergenic | 30.0% | |
| AAACACAAACTAACAGAGAA+AGG | + | chr1.2:74488107-74488126 | None:intergenic | 30.0% | |
| AACACAAACTAACAGAGAAA+GGG | + | chr1.2:74488106-74488125 | None:intergenic | 30.0% | |
| AACCATAAGGTTGAAAAGAT+TGG | + | chr1.2:74489541-74489560 | None:intergenic | 30.0% | |
| AATATGCTGTTCAATCTGAT+TGG | - | chr1.2:74487409-74487428 | MS.gene34092:CDS | 30.0% | |
| AATCTTCAACTTCATAGAAG+AGG | - | chr1.2:74487198-74487217 | MS.gene34092:CDS | 30.0% | |
| AATTAGAGCTGAAAATGAAG+AGG | + | chr1.2:74487859-74487878 | None:intergenic | 30.0% | |
| AGAGAATATAGATGTGATTG+TGG | - | chr1.2:74487459-74487478 | MS.gene34092:CDS | 30.0% | |
| ATCAAAGAAAGACCTCAAAT+TGG | - | chr1.2:74488635-74488654 | MS.gene34092:intron | 30.0% | |
| ATGATCATAAATCAGCTGAT+AGG | - | chr1.2:74489772-74489791 | MS.gene34092:intron | 30.0% | |
| ATTAAACCCACCAAATACAA+AGG | + | chr1.2:74488828-74488847 | None:intergenic | 30.0% | |
| ATTGCTTTCATTGCCAAATA+TGG | + | chr1.2:74489931-74489950 | None:intergenic | 30.0% | |
| CTTCAAAAAGCTTCTCAAAT+TGG | - | chr1.2:74489711-74489730 | MS.gene34092:intron | 30.0% | |
| GTAAACTACAATAGAAGTAG+AGG | + | chr1.2:74488716-74488735 | None:intergenic | 30.0% | |
| TAAACTAATGTGATGGTTTG+TGG | + | chr1.2:74489202-74489221 | None:intergenic | 30.0% | |
| TGAATTGATCATGAACCATA+AGG | + | chr1.2:74489554-74489573 | None:intergenic | 30.0% | |
| TGATCATAAATCAGCTGATA+GGG | - | chr1.2:74489773-74489792 | MS.gene34092:intron | 30.0% | |
| TGGAAATAGAAGTTCAAGTA+TGG | - | chr1.2:74489836-74489855 | MS.gene34092:CDS | 30.0% | |
| TGTGATATAACGAATTCTCT+TGG | - | chr1.2:74488503-74488522 | MS.gene34092:intron | 30.0% | |
| TGTTCTCATATGAATTGGAA+TGG | - | chr1.2:74488299-74488318 | MS.gene34092:intron | 30.0% | |
| TTTGCAATTGATGGGATATT+TGG | + | chr1.2:74489227-74489246 | None:intergenic | 30.0% | |
| ! | ACAAACCATCACATTAGTTT+AGG | - | chr1.2:74489201-74489220 | MS.gene34092:intron | 30.0% |
| ! | CAAAATGTTGTTATTGCTAG+TGG | + | chr1.2:74489274-74489293 | None:intergenic | 30.0% |
| ! | CAACTTGATGATCACTTAAA+GGG | + | chr1.2:74489626-74489645 | None:intergenic | 30.0% |
| ! | CTGATGATTTTGCAATTGAT+GGG | + | chr1.2:74489235-74489254 | None:intergenic | 30.0% |
| ! | GTTAGAAGGTGTATATTGTA+TGG | - | chr1.2:74488131-74488150 | MS.gene34092:CDS | 30.0% |
| ! | TCTGATGATTTTGCAATTGA+TGG | + | chr1.2:74489236-74489255 | None:intergenic | 30.0% |
| ! | TGACCATTTTCTTTGCAAAT+CGG | + | chr1.2:74487757-74487776 | None:intergenic | 30.0% |
| ! | TTCCAATCTTTTCAACCTTA+TGG | - | chr1.2:74489536-74489555 | MS.gene34092:intron | 30.0% |
| ! | TTGAGATTGTTGTTCTTCAA+AGG | + | chr1.2:74489430-74489449 | None:intergenic | 30.0% |
| !! | ACTTTAGATTTTCTTGGTGT+TGG | - | chr1.2:74489984-74490003 | MS.gene34092:CDS | 30.0% |
| !! | TAATGTAAAGTGTTGTTCCT+TGG | + | chr1.2:74489593-74489612 | None:intergenic | 30.0% |
| !! | TTCTCTGTTAGTTTGTGTTT+GGG | - | chr1.2:74488107-74488126 | MS.gene34092:CDS | 30.0% |
| !! | TTTCTCTGTTAGTTTGTGTT+TGG | - | chr1.2:74488106-74488125 | MS.gene34092:CDS | 30.0% |
| !! | TTTGTGATTAATTTTGGTGC+AGG | - | chr1.2:74489076-74489095 | MS.gene34092:intron | 30.0% |
| !!! | AACAACATCAATGTCACTTT+TGG | - | chr1.2:74489816-74489835 | MS.gene34092:CDS | 30.0% |
| !!! | AGGTGAACATAACTCTTTTT+TGG | - | chr1.2:74488921-74488940 | MS.gene34092:intron | 30.0% |
| !!! | ATATTTTGGCATAATCCCAT+GGG | - | chr1.2:74488689-74488708 | MS.gene34092:intron | 30.0% |
| !!! | CATTGACAATTTTTTTTGGG+TGG | + | chr1.2:74489036-74489055 | None:intergenic | 30.0% |
| AATTGATGAGTACTCCCAAA+AGG | + | chr1.2:74489174-74489193 | None:intergenic | 35.0% | |
| ATATGTGAGGTTTGCAACAA+AGG | - | chr1.2:74487159-74487178 | MS.gene34092:CDS | 35.0% | |
| ATTGATGAGTACTCCCAAAA+GGG | + | chr1.2:74489173-74489192 | None:intergenic | 35.0% | |
| CACAAATAAACCTTTCTCCT+TGG | + | chr1.2:74487267-74487286 | None:intergenic | 35.0% | |
| CCTTTAAGTGATCATCAAGT+TGG | - | chr1.2:74489624-74489643 | MS.gene34092:intron | 35.0% | |
| GAAGAACAACAATCTCAACA+AGG | - | chr1.2:74489432-74489451 | MS.gene34092:intron | 35.0% | |
| GATGAAGAGTGATTTAAAGG+TGG | + | chr1.2:74489345-74489364 | None:intergenic | 35.0% | |
| GGAAACACATCATCCATATT+TGG | - | chr1.2:74489915-74489934 | MS.gene34092:CDS | 35.0% | |
| GTTGCTTGCATTTATTGAGT+AGG | - | chr1.2:74488548-74488567 | MS.gene34092:intron | 35.0% | |
| TATGTGAGGTTTGCAACAAA+GGG | - | chr1.2:74487160-74487179 | MS.gene34092:CDS | 35.0% | |
| TGACAGTTTCATCACTCATA+GGG | - | chr1.2:74489101-74489120 | MS.gene34092:intron | 35.0% | |
| TGACATGATGAATACTAGCA+TGG | - | chr1.2:74490058-74490077 | MS.gene34092:CDS | 35.0% | |
| TTGCAACAAAGGGTTTCAAA+GGG | - | chr1.2:74487170-74487189 | MS.gene34092:CDS | 35.0% | |
| TTTGACCATGTTGCATTGAA+TGG | + | chr1.2:74489656-74489675 | None:intergenic | 35.0% | |
| TTTGCAACAAAGGGTTTCAA+AGG | - | chr1.2:74487169-74487188 | MS.gene34092:CDS | 35.0% | |
| TTTGGCCTAAACTAATGTGA+TGG | + | chr1.2:74489209-74489228 | None:intergenic | 35.0% | |
| TTTGTATTGCCTTGAAGATC+AGG | + | chr1.2:74489498-74489517 | None:intergenic | 35.0% | |
| TTTGTCCATTCAATGCAACA+TGG | - | chr1.2:74489648-74489667 | MS.gene34092:intron | 35.0% | |
| ! | AAGTGTTGTTCAAACTTTGG+TGG | + | chr1.2:74489312-74489331 | None:intergenic | 35.0% |
| ! | AATAACAACATTTTGCGCCT+TGG | - | chr1.2:74489279-74489298 | MS.gene34092:intron | 35.0% |
| ! | ATGTTTGTTACCTAGAGAAG+AGG | + | chr1.2:74487488-74487507 | None:intergenic | 35.0% |
| ! | CATCCGATTTGCAAAGAAAA+TGG | - | chr1.2:74487751-74487770 | MS.gene34092:CDS | 35.0% |
| ! | CCAACTTGATGATCACTTAA+AGG | + | chr1.2:74489627-74489646 | None:intergenic | 35.0% |
| ! | GCACATTCAACTCAACATTT+TGG | - | chr1.2:74490107-74490126 | MS.gene34092:CDS | 35.0% |
| ! | TCCATGTTCTTTTCAGCAAT+GGG | - | chr1.2:74488384-74488403 | MS.gene34092:intron | 35.0% |
| ! | TGCTAGTGGATGATGTAATT+TGG | + | chr1.2:74489260-74489279 | None:intergenic | 35.0% |
| ! | TGTTTGTTACCTAGAGAAGA+GGG | + | chr1.2:74487487-74487506 | None:intergenic | 35.0% |
| ! | TTCCATGTTCTTTTCAGCAA+TGG | - | chr1.2:74488383-74488402 | MS.gene34092:intron | 35.0% |
| ! | TTGAAGAATGGTGATGAAGA+TGG | + | chr1.2:74489384-74489403 | None:intergenic | 35.0% |
| !! | AAAGCACATTCTAAGACTTG+TGG | - | chr1.2:74487432-74487451 | MS.gene34092:CDS | 35.0% |
| !!! | CATATTTTGGCATAATCCCA+TGG | - | chr1.2:74488688-74488707 | MS.gene34092:intron | 35.0% |
| !!! | GAGTTGAATGTGCTGATTTT+AGG | + | chr1.2:74490100-74490119 | None:intergenic | 35.0% |
| !!! | GCTACTTTTGCCAAAAGTTA+GGG | - | chr1.2:74487593-74487612 | MS.gene34092:CDS | 35.0% |
| !!! | TGCTACTTTTGCCAAAAGTT+AGG | - | chr1.2:74487592-74487611 | MS.gene34092:CDS | 35.0% |
| !!! | TTAGATTTTCTTGGTGTTGG+AGG | - | chr1.2:74489987-74490006 | MS.gene34092:CDS | 35.0% |
| AAAAGTCCAACAAAGAGCCA+AGG | - | chr1.2:74487247-74487266 | MS.gene34092:CDS | 40.0% | |
| AACAACCTGAGTAGTAACCA+AGG | - | chr1.2:74489573-74489592 | MS.gene34092:intron | 40.0% | |
| AAGCATTACTCTCGTAAGCA+TGG | - | chr1.2:74487351-74487370 | MS.gene34092:CDS | 40.0% | |
| AGATCTCCTAAAGCTCTTGA+AGG | + | chr1.2:74487318-74487337 | None:intergenic | 40.0% | |
| ATGAATTGGAATGGAGATGC+TGG | - | chr1.2:74488308-74488327 | MS.gene34092:intron | 40.0% | |
| ATGCATCTTCCTGATCTTCA+AGG | - | chr1.2:74489486-74489505 | MS.gene34092:intron | 40.0% | |
| CAAGTGGCTACCTTTGTATT+TGG | - | chr1.2:74488815-74488834 | MS.gene34092:intron | 40.0% | |
| GATCTCCTAAAGCTCTTGAA+GGG | + | chr1.2:74487317-74487336 | None:intergenic | 40.0% | |
| GATGACAACAACGATCTTCA+TGG | - | chr1.2:74489870-74489889 | MS.gene34092:CDS | 40.0% | |
| GTGACAGTTTCATCACTCAT+AGG | - | chr1.2:74489100-74489119 | MS.gene34092:intron | 40.0% | |
| GTTTGTGTTTGGGTGTTAGA+AGG | - | chr1.2:74488117-74488136 | MS.gene34092:CDS | 40.0% | |
| TGAATTGGAATGGAGATGCT+GGG | - | chr1.2:74488309-74488328 | MS.gene34092:intron | 40.0% | |
| TGGCTACCTTTGTATTTGGT+GGG | - | chr1.2:74488819-74488838 | MS.gene34092:intron | 40.0% | |
| TTGTTCCTTGGTTACTACTC+AGG | + | chr1.2:74489581-74489600 | None:intergenic | 40.0% | |
| ! | TAAGACACCCTAACCCTTTT+GGG | - | chr1.2:74489157-74489176 | MS.gene34092:intron | 40.0% |
| ! | TTAAGACACCCTAACCCTTT+TGG | - | chr1.2:74489156-74489175 | MS.gene34092:intron | 40.0% |
| !! | GACTTTTGCTTTAGCTTCCA+AGG | + | chr1.2:74487234-74487253 | None:intergenic | 40.0% |
| !!! | AGCTTTTTGAAGCAATGCAG+TGG | + | chr1.2:74489703-74489722 | None:intergenic | 40.0% |
| !!! | TTTTCTTGGTGTTGGAGGAA+TGG | - | chr1.2:74489992-74490011 | MS.gene34092:CDS | 40.0% |
| AATAGAAGTAGAGGGCCCAT+GGG | + | chr1.2:74488707-74488726 | None:intergenic | 45.0% | |
| AGGTGTATATTGTATGGCGC+AGG | - | chr1.2:74488137-74488156 | MS.gene34092:CDS | 45.0% | |
| ATGGTCAGAAACATGAGTGG+TGG | - | chr1.2:74490011-74490030 | MS.gene34092:CDS | 45.0% | |
| CAACAAAGAGCCAAGGAGAA+AGG | - | chr1.2:74487254-74487273 | MS.gene34092:CDS | 45.0% | |
| GAAGAGGACACAATCTTCCT+TGG | - | chr1.2:74487214-74487233 | MS.gene34092:CDS | 45.0% | |
| GAGTACTCCCAAAAGGGTTA+GGG | + | chr1.2:74489167-74489186 | None:intergenic | 45.0% | |
| GCCCATTGCTGAAAAGAACA+TGG | + | chr1.2:74488388-74488407 | None:intergenic | 45.0% | |
| GGAATGGTCAGAAACATGAG+TGG | - | chr1.2:74490008-74490027 | MS.gene34092:CDS | 45.0% | |
| GTAAGCATGGTGAGAAGAAG+TGG | - | chr1.2:74487364-74487383 | MS.gene34092:CDS | 45.0% | |
| GTGGCTACCTTTGTATTTGG+TGG | - | chr1.2:74488818-74488837 | MS.gene34092:intron | 45.0% | |
| TGAGTACTCCCAAAAGGGTT+AGG | + | chr1.2:74489168-74489187 | None:intergenic | 45.0% | |
| ! | CTTTCTCCTTGGCTCTTTGT+TGG | + | chr1.2:74487256-74487275 | None:intergenic | 45.0% |
| !! | ACTTTGGTGGTGTTGATCCA+AGG | + | chr1.2:74489299-74489318 | None:intergenic | 45.0% |
| !! | AGAGCTTTAGGAGATCTCAC+TGG | - | chr1.2:74487321-74487340 | MS.gene34092:CDS | 45.0% |
| !! | TATAATTTATATAATCAATT+AGG | - | chr1.2:74488848-74488867 | MS.gene34092:intron | 5.0% |
| AAGCTCTTGAAGGGTCGTGA+TGG | + | chr1.2:74487308-74487327 | None:intergenic | 50.0% | |
| AATGCAGTGGCAGACATGTG+AGG | + | chr1.2:74489690-74489709 | None:intergenic | 50.0% | |
| ATTGTGGCACCCTCTTCTCT+AGG | - | chr1.2:74487475-74487494 | MS.gene34092:CDS | 50.0% | |
| CAATAGAAGTAGAGGGCCCA+TGG | + | chr1.2:74488708-74488727 | None:intergenic | 50.0% | |
| CACGACCCTTCAAGAGCTTT+AGG | - | chr1.2:74487309-74487328 | MS.gene34092:CDS | 50.0% | |
| ! | TGATGGACGCATGTGGGCTC+AGG | + | chr1.2:74487291-74487310 | None:intergenic | 60.0% |
| !! | AGGGTCGTGATGGACGCATG+TGG | + | chr1.2:74487298-74487317 | None:intergenic | 60.0% |
| !! | GGGTCGTGATGGACGCATGT+GGG | + | chr1.2:74487297-74487316 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 74487141 | 74490151 | 74487141 | ID=MS.gene34092 |
| chr1.2 | mRNA | 74487141 | 74490151 | 74487141 | ID=MS.gene34092.t1;Parent=MS.gene34092 |
| chr1.2 | exon | 74489796 | 74490151 | 74489796 | ID=MS.gene34092.t1.exon1;Parent=MS.gene34092.t1 |
| chr1.2 | CDS | 74489796 | 74490151 | 74489796 | ID=cds.MS.gene34092.t1;Parent=MS.gene34092.t1 |
| chr1.2 | exon | 74487141 | 74488194 | 74487141 | ID=MS.gene34092.t1.exon2;Parent=MS.gene34092.t1 |
| chr1.2 | CDS | 74487141 | 74488194 | 74487141 | ID=cds.MS.gene34092.t1;Parent=MS.gene34092.t1 |
| Gene Sequence |
| Protein sequence |
