AlfalfaGEDB | MS.gene072998

M. sativa cultivar XinJiangDaYe / MS.gene072998

KEGG: K25656
GO: GO:0003674 GO:0003824 GO:0003913 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016829 GO:0016830 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360
PFAM: PF00875.21 PF03441.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072998.t1	XP_003603523.2	96.5	549	19	0	1	549	47	595	0.00E+00	1110.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072998.t1	Q38JU2	69.3	534	163	1	13	545	40	573	4.0e-229	795.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072998.t1	G7JCC1	96.5	549	19	0	1	549	47	595	0.0e+00	1110.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene072998	0.814517	1.48E-51	-1.69E-46
MS.gene049217	MS.gene072998	0.805014	1.64E-49	-1.69E-46
MS.gene049222	MS.gene072998	0.802999	4.30E-49	-1.69E-46
MS.gene049356	MS.gene072998	0.819982	8.73E-53	-1.69E-46
MS.gene049369	MS.gene072998	0.853496	2.30E-61	-1.69E-46
MS.gene049396	MS.gene072998	0.800557	1.36E-48	-1.69E-46
MS.gene049427	MS.gene072998	0.83325	5.94E-56	-1.69E-46
MS.gene049609	MS.gene072998	0.827293	1.69E-54	-1.69E-46
MS.gene049633	MS.gene072998	0.82183	3.28E-53	-1.69E-46
MS.gene049805	MS.gene072998	0.806736	7.12E-50	-1.69E-46

Showing 1 to 10 of 142 entries

Previous1 2 3 4 5…15Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072998.t1	MTR_3g108700	96.539	549	19	0	1	549	47	595	0.0	1114
MS.gene072998.t1	MTR_1g088420	34.367	387	208	10	5	366	74	439	2.86e-60	206
MS.gene072998.t1	MTR_4g011370	28.392	479	303	13	37	500	1	454	5.77e-40	152
MS.gene072998.t1	MTR_4g011370	28.452	478	302	13	38	500	2	454	5.79e-40	152
MS.gene072998.t1	MTR_4g011370	26.625	477	288	13	38	500	2	430	6.57e-32	129
MS.gene072998.t1	MTR_1g043190	27.254	477	291	15	52	508	4	444	8.35e-28	118
MS.gene072998.t1	MTR_1g076190	28.631	482	276	19	53	508	7	446	3.85e-25	110
MS.gene072998.t1	MTR_1g076190	28.631	482	276	19	53	508	7	446	4.50e-25	109
MS.gene072998.t1	MTR_5g063920	38.621	145	86	2	380	521	155	299	1.12e-17	86.7
MS.gene072998.t1	MTR_5g063920	41.538	130	75	1	380	508	319	448	1.36e-17	86.7

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072998.t1	AT5G24850	69.533	535	144	4	17	547	48	567	0.0	773
MS.gene072998.t1	AT2G47590	37.758	339	171	10	55	373	120	438	5.27e-59	202
MS.gene072998.t1	AT3G15620	30.185	487	302	14	31	501	6	470	4.54e-45	167
MS.gene072998.t1	AT3G15620	30.493	446	272	14	31	460	6	429	5.21e-39	148
MS.gene072998.t1	AT1G04400	27.869	488	271	21	53	506	8	448	2.34e-25	110
MS.gene072998.t1	AT1G04400	27.869	488	271	21	53	506	8	448	2.34e-25	110
MS.gene072998.t1	AT4G08920	40.769	130	76	1	380	508	324	453	6.08e-19	90.9
MS.gene072998.t1	AT4G25290	30.374	214	106	10	51	257	36	213	2.00e-13	73.6

Showing 1 to 8 of 8 entries

Previous1Next

Find 141 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAACTGTAATTTGGGG+TGG	0.651990	3.4:+94130471	None:intergenic
AACAAGGGGATGAAATTTGT+GGG	0.551545	3.4:-94129731	MS.gene072998:CDS
AACACCAAGAGGAGTGGTAA+AGG	0.541108	3.4:-94131763	MS.gene072998:CDS
AAGCAAATAGTTCTACCTAC+TGG	0.538920	3.4:-94128996	MS.gene072998:intron
AAGCTTCCGGATGCAAGCCA+TGG	0.569250	3.4:+94129157	None:intergenic
AAGGGGATGAAATTTGTGGG+GGG	0.704567	3.4:-94129728	MS.gene072998:CDS
AAGGTGAATATGTTGCATAC+TGG	0.650078	3.4:-94127312	MS.gene072998:CDS
AAGTCACTTGGTGCAAGAAG+AGG	0.607529	3.4:-94127175	MS.gene072998:CDS
AAGTGTACCTTTGGAATGTT+TGG	0.395594	3.4:+94131791	None:intergenic
AATAATGGGGACAAGTCACT+TGG	0.587812	3.4:-94127187	MS.gene072998:CDS

Showing 1 to 10 of 141 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACCCTGTGAAAATAAAGA+CGG	+	chr3.4:94130376-94130395	None:intergenic	30.0%
AAAGAAAAAAGGAACTTTCC+TGG	-	chr3.4:94131759-94131778	MS.gene072998:CDS	30.0%
AACACACAATCTGTCAAAAA+AGG	+	chr3.4:94131084-94131103	None:intergenic	30.0%
AATTATGGAAACTGGACTTA+TGG	-	chr3.4:94131190-94131209	MS.gene072998:intron	30.0%
ACAATTTCTCCTTGAATGTT+TGG	-	chr3.4:94128171-94128190	MS.gene072998:intron	30.0%
ACACACAATCTGTCAAAAAA+GGG	+	chr3.4:94131083-94131102	None:intergenic	30.0%
ACACTAACACATTAGATTGA+AGG	+	chr3.4:94128028-94128047	None:intergenic	30.0%
ACATGTGTAGGATTTACTAA+AGG	-	chr3.4:94129788-94129807	MS.gene072998:intron	30.0%
ACCTTCATGTTTACTCAAAA+AGG	+	chr3.4:94129557-94129576	None:intergenic	30.0%
ACGACTAGTAGACATAATAA+TGG	-	chr3.4:94131822-94131841	MS.gene072998:CDS	30.0%

Showing 1 to 10 of 300 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	94127135	94131911	94127135	ID=MS.gene072998
chr3.4	mRNA	94127135	94131911	94127135	ID=MS.gene072998.t1;Parent=MS.gene072998
chr3.4	exon	94131608	94131911	94131608	ID=MS.gene072998.t1.exon1;Parent=MS.gene072998.t1
chr3.4	CDS	94131608	94131911	94131608	ID=cds.MS.gene072998.t1;Parent=MS.gene072998.t1
chr3.4	exon	94130746	94130885	94130746	ID=MS.gene072998.t1.exon2;Parent=MS.gene072998.t1
chr3.4	CDS	94130746	94130885	94130746	ID=cds.MS.gene072998.t1;Parent=MS.gene072998.t1
chr3.4	exon	94130391	94130615	94130391	ID=MS.gene072998.t1.exon3;Parent=MS.gene072998.t1
chr3.4	CDS	94130391	94130615	94130391	ID=cds.MS.gene072998.t1;Parent=MS.gene072998.t1
chr3.4	exon	94129872	94129997	94129872	ID=MS.gene072998.t1.exon4;Parent=MS.gene072998.t1
chr3.4	CDS	94129872	94129997	94129872	ID=cds.MS.gene072998.t1;Parent=MS.gene072998.t1
chr3.4	exon	94129682	94129756	94129682	ID=MS.gene072998.t1.exon5;Parent=MS.gene072998.t1
chr3.4	CDS	94129682	94129756	94129682	ID=cds.MS.gene072998.t1;Parent=MS.gene072998.t1
chr3.4	exon	94129132	94129248	94129132	ID=MS.gene072998.t1.exon6;Parent=MS.gene072998.t1
chr3.4	CDS	94129132	94129248	94129132	ID=cds.MS.gene072998.t1;Parent=MS.gene072998.t1
chr3.4	exon	94128997	94129043	94128997	ID=MS.gene072998.t1.exon7;Parent=MS.gene072998.t1
chr3.4	CDS	94128997	94129043	94128997	ID=cds.MS.gene072998.t1;Parent=MS.gene072998.t1
chr3.4	exon	94128579	94128655	94128579	ID=MS.gene072998.t1.exon8;Parent=MS.gene072998.t1
chr3.4	CDS	94128579	94128655	94128579	ID=cds.MS.gene072998.t1;Parent=MS.gene072998.t1
chr3.4	exon	94128315	94128390	94128315	ID=MS.gene072998.t1.exon9;Parent=MS.gene072998.t1
chr3.4	CDS	94128315	94128390	94128315	ID=cds.MS.gene072998.t1;Parent=MS.gene072998.t1
chr3.4	exon	94128078	94128147	94128078	ID=MS.gene072998.t1.exon10;Parent=MS.gene072998.t1
chr3.4	CDS	94128078	94128147	94128078	ID=cds.MS.gene072998.t1;Parent=MS.gene072998.t1
chr3.4	exon	94127829	94127952	94127829	ID=MS.gene072998.t1.exon11;Parent=MS.gene072998.t1
chr3.4	CDS	94127829	94127952	94127829	ID=cds.MS.gene072998.t1;Parent=MS.gene072998.t1
chr3.4	exon	94127472	94127521	94127472	ID=MS.gene072998.t1.exon12;Parent=MS.gene072998.t1
chr3.4	CDS	94127472	94127521	94127472	ID=cds.MS.gene072998.t1;Parent=MS.gene072998.t1
chr3.4	exon	94127135	94127353	94127135	ID=MS.gene072998.t1.exon13;Parent=MS.gene072998.t1
chr3.4	CDS	94127135	94127353	94127135	ID=cds.MS.gene072998.t1;Parent=MS.gene072998.t1

Gene Sequence

>MS.gene072998

ATGAACATGTGCACCACCAAATCCGAACCCTCAGCATCTTCTTCGTCAATGCAGCACGTGCCAGAGCTAGACTCTAACGAAATGGAAAGTGTGGCAAACCAAACATTCCAAAGGTACACTTCCAATAACACCAAGAGGAGTGGTAAAGGTACGGCAATCGTGTGGTTTAGAAACGATCTCAGAGTTTTGGATAATGAAACTCTCTACAAGGCTTGGCTTTCTTCTCAAACTCTCTTGCCTGTTTATTGTATTGATCCTCGACTATTTGCAACCACTTACCATTTCGGATTTCCAAAAACCGGAGGTATATTCTTGTTTCATTACTGTCTTTTATCTCTTTTCTTCAATGACATTGAAACTGAGATGTCCACACCGGGAATAATTTCAAAAATAGAAGTGACTGAAACTTTATTCGGTAATTGTAGCAGACGACGCATAAGTTAACCGATACTGGATAGACTTATATCAGATAGCGGATAAGCTAGAGATCGAATTTCAAGTGTTAGCCTGTTAGGTAAATTTAAATGTTGAACTAACTTAAATATTTAAAATGATATAAAAATGTGTTTTTAATTAATGTTTAATTTTTTTTCCAATTAAAATAATTAGGGTAAAAATGAGAGGCAAAATTATACGTTATAAGCTACTATTAGTTAAAACACTGCTCGAAGTGGCATATCAAAAAAATACTATAAGCTAGTGAAAAATGCTTTATGCTCGTAGAAAGGTTGTTACCAAATAGCTTTACTTTGATCGCACAAACTTGTACACTAAGCTAGCGGTTTGTCCTTGCTAAACCGAGCCTGAATGTAACATTTGTCAGCGTTGTTTCATAATTTTTTTTTTGTGATATGTTATAGTTTGACGCATGTTGAACACCAAATAATACACCTTCAATCTAATGTGTTAGTGTTTTGTAGCTTTTATTAACTTCTTTGTTTGTTTTGTTGGTGCTATAGATTTGAATTTGATTAATGCGATAGCAATATAATATAGCATCACCTTTATGAACATGACCTTGTGCAGCATTGAGAACACAATTTCTCCTTGAATGTTTGGATGACTTGAGGAAGAATCTAATGAAACGGGGACTTAATTTGCTTATTCAACATGGCAAACCTGAAGATATTCTTCCTTCTCTAGTTAAAGCTTATGGAGCTCATACAGTTAGTATTTGAGTATTACTTTTTTAATTATGTTTAATAAGCTAGTTTAGATTGATGGAATTTCCAAATTTTATGATAATTGATGCATCTTTAGGGTTGGTTGGTTCATTGGTGAATGTGAAATTGTCAGGTTTATGCACAGAAAGAAACTTGTAGCGAAGAGCTGGATGTTGAAAGGTCTCTCAACAAATGTCTTCAACAAGTGGTAGTACCATCTGACGGATCCGCTGGGGCGGCATCAGCTTCTAACAGCCACCCCAAATTACAGTTTGTTTGGGGCACCACTATGTACCACCGTGACGATCTTCCTTTTGATGTCACTTGTTTGCCAGATGTTTATACTCAATTTCGTAAGGCATGGTATTTCAATTGACATGTGTGTTTAGATTTATATGGATTTATTTGGATTAACTTATTTAAGCTTATCTACGGACATAAGCACTTGTAAGACTGTTTGAGAGAACTTATGAGAACACCTTGTAAGACGTCCATACTTGATTTTATCTTATTTCCATAAGCTCTCCAGGATAGCTTATGAAAACAAGCCATAGCTTATGTGAAAACAGTTTAACTACATTTTTGTTTATATAATTAGTTTATACATAAGTACTTATATTATTTTTTTTGACAAGACATAAGTACTTAAGTACTTATATGATGAGCGCTTATACTATAAGCACTTAGTTAAGTTGTCCACCGAAATAGGAAATGGCTTTTGCTGCTACTCATACTGCTACTGAATATGCAGACTGTTGAAGCGAAATGTGCCGTGCGCTCATGCATCAAACTGCCAACATCACTTGGACCACCTCCCCCAATTGAGGATTGGGGATGTCTTCCTTCATTGGAGCTGCTGGGACTTTCCTCACAGAATGTAGGTTTTGCCATAAGTATACTTGTGGATATCCATGCAAGAGACTCTAGTCCTTTGAACTCAACAATGAAAAAGTAATGACTTTCGCTTTTCTGTTTGCTTCCTCTTGATGTAGGTTAACAAGGGGATGAAATTTGTGGGGGGTGAAACTGCCGCATTGAGCAGAATATATGAATACTTTTGGAAGAAGGTCAGAGGTTACACTTATCTACATTTTTTTAACTATATATGTTATGTTGGAATTAATGTTAGTCATGATGGGAGTAGGGATGGAAACTTGAACTCCTTATCTCCAAATGAAAATGTAGATTTAATTTATGTCATTCTGCATCTGTCTATTCTCCGAATAATGAGTTAATTTAGGAGTAATATTTTTTCCCCTTTTTGAGTAAACATGAAGGTTCAAGAGTTATCACTGATAGGGAACAGTCGTCTATACAACTGCATACAGAATGGAAGGGAATTATTTAATTGTGTGCAACATAAAATAGGAAAAAGGGTCAAACGAAAATATGTTCACCGGTGGCTCCGGGACTTAATTAAGATATTCAAGATCTAAAAATATAGTGTGGTCGAAACATTGTTTAGTCATCTAACTCATTCTTAAGCTTGTACATGTGTAGGATTTACTAAAGGTATATAAAGAGACCCGAAATGGGATGTTAGGGCCTCATTATTCTACTAAATTCTCGCCATGGCTTGCATCCGGAAGCTTGTCTCCTCGTCTCATACACGAAGAGGTTAAAGTTGACAACAGATTCTGATTTGTTTATTACATGATATTGAAAAACTAGACTCCTTTGATAAAGTATTGTCTGTTCATCATAGGTGAAGAGATATGAGAATGAAAGACAAGCAAATAGTTCTACCTACTGGTAACACTTCGTTTTCTTATTATTGTAGATCTATATCATATTTATTGATAGAATTCTCTTATTTGCACTTTTGTAGCTATTTCTGAATAATTCACTTATCTGTCAACTTGAAATTTCGCACACTTGCTTTAACTCCATCTAGAAAAGGCTAGTGCGAAATTTAGTGACAAAGAAAGGGTAATGCTTAAGGAAAGAAAAACTAACAGGAGAAAAACCAAGCTATTCATTCTTTAATTCTTCATGAAAGTTCAGTAATAGTAGACAGTTAAATAATTACACGGTTGACATCCTACATCTTCTTGTAACGCATTCTTCTTCTGAATCCGTCTTTATTTTCACAGGGTTTTGTTCGAGTTGCTATGGAGGGATTACTTTAGGTTTCTATCAGTCAAATATGGAAATTCACTTTTCCATATAGGTATGGGTTGTTCAAAGTCTTTGATGCCTCTGGCGATTTATCGGGTCATGGATTAAAACTTCTGCTGGTTTAATATGGCGGTGTTATTCATAGTTGTGGAGTGCAAGTGTGTTGATGCATCTCCATAGAACCTTTTTGTTATAATTAATTTATCAGATTGCTTATGTGTAGTCTTTATTTCTTTGTAGGTGGACCTAGAAATGTTCAGAAAAATTGGAGCCAAGACAAAAAATTATTTGAATCCTGGAGAGATGGTTGTACAGGGTTAGTTTCTATCACATCATTATACAATTTTCTTGTTTGTTTCAATACAATACTATTTCTTGATATTATTTTTGTTCTTCTAGAATAGAACTCAAACCTGTAGTTTTTTCTTTTAGCGAACTCAAACCTGTATTGACTTTTTCTTCACTGTGTATATACACCTTCAGGTATCCTCTGATAGATGCAAACATGAAAGAATTATCCACTACAGGATTTATGTCAAACCGAGGACGGCAGGTGAACCAAAGTACATTAATGTGTTTCTACAGTATAGTAATTGCTAGGAATTGATACATTGAACTAACGTGAATTTGCACACACCTTTTGTAACCGGAACATGAAAGATTACCCTTTTTTGACAGATTGTGTGTTCCTTCCTAGTTCGTGATATGGGCATAGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGATCAGGTAAATATTTGGAAGTATATGTAACACTTTCTGTAGTAATTCAAATGAAGTCTATTATTTCCACATTTCTTTCTGTTAATAAAAATCCTTGTAGATTTTTTAATATGTCATGCCAACATTATTATGTTGTCCATAAATTCTTTAAAGTAATTCAAATGAAGTCTATTATTTCCACATTTCTTTCTGTTAATAAAAATCCTTGTAGATTTTTTAATATGTCATGCCAACATTATTATGTTGTCCATAAATTCTTTAAACAATGAAAGTTACACTCCATACTCTCTTACTTTTTCTTCTTCTGAATCAGGAGTCGGGAATGATCCTAGAGAAGACCGATATTTCAGCATACCAAAACAAGTAAGTGTCTATGAGAAGATTCACAATTTACTTTGAAATATGGACTTGAAACAGATATAATATTCAGTAAATTTTTAAATTTGGTTCTGATGTGGAACCATTATATACTTGTTGTCAGGCACAAACATATGACCCAGAAGGTGAATATGTTGCATACTGGTTGCCACAGTTAAGAGCAATCTCAAAAGAAAAAAGGAACTTTCCTGGTAATTTATACATTCGTCAAATTGTGCGTCTCAAGTTTGGAACGACTAGTAGACATAATAATGGGGACAAGTCACTTGGTGCAAGAAGAGGTGATGATAGACGAAATGAAAGAAGATGGAACAGGAGATAA

Protein sequence

>MS.gene072998.t1

MNMCTTKSEPSASSSSMQHVPELDSNEMESVANQTFQRYTSNNTKRSGKGTAIVWFRNDLRVLDNETLYKAWLSSQTLLPVYCIDPRLFATTYHFGFPKTGALRTQFLLECLDDLRKNLMKRGLNLLIQHGKPEDILPSLVKAYGAHTVYAQKETCSEELDVERSLNKCLQQVVVPSDGSAGAASASNSHPKLQFVWGTTMYHRDDLPFDVTCLPDVYTQFRKTVEAKCAVRSCIKLPTSLGPPPPIEDWGCLPSLELLGLSSQNVNKGMKFVGGETAALSRIYEYFWKKDLLKVYKETRNGMLGPHYSTKFSPWLASGSLSPRLIHEEVKRYENERQANSSTYWVLFELLWRDYFRFLSVKYGNSLFHIGGPRNVQKNWSQDKKLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRAISKEKRNFPGNLYIRQIVRLKFGTTSRHNNGDKSLGARRGDDRRNERRWNRR