Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21136.t1 | RHN80968.1 | 97.5 | 611 | 13 | 1 | 1 | 609 | 1 | 611 | 0.00E+00 | 1147.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21136.t1 | Q41062 | 89.8 | 599 | 41 | 2 | 1 | 599 | 1 | 579 | 3.4e-298 | 1025.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21136.t1 | A0A396JXS3 | 97.5 | 611 | 13 | 1 | 1 | 609 | 1 | 611 | 0.0e+00 | 1147.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene21136 | 0.8228 | 1.95E-53 | -1.69E-46 |
| MS.gene049153 | MS.gene21136 | 0.816651 | 4.96E-52 | -1.69E-46 |
| MS.gene049260 | MS.gene21136 | 0.815821 | 7.60E-52 | -1.69E-46 |
| MS.gene049346 | MS.gene21136 | 0.809214 | 2.11E-50 | -1.69E-46 |
| MS.gene049351 | MS.gene21136 | 0.861923 | 7.29E-64 | -1.69E-46 |
| MS.gene049356 | MS.gene21136 | 0.831248 | 1.86E-55 | -1.69E-46 |
| MS.gene049369 | MS.gene21136 | 0.806929 | 6.48E-50 | -1.69E-46 |
| MS.gene049389 | MS.gene21136 | 0.815697 | 8.09E-52 | -1.69E-46 |
| MS.gene049491 | MS.gene21136 | 0.832463 | 9.32E-56 | -1.69E-46 |
| MS.gene049661 | MS.gene21136 | 0.815073 | 1.11E-51 | -1.69E-46 |
| MS.gene049662 | MS.gene21136 | 0.809986 | 1.44E-50 | -1.69E-46 |
| MS.gene049681 | MS.gene21136 | 0.829873 | 4.03E-55 | -1.69E-46 |
| MS.gene049758 | MS.gene21136 | 0.87384 | 1.08E-67 | -1.69E-46 |
| MS.gene049910 | MS.gene21136 | 0.807164 | 5.78E-50 | -1.69E-46 |
| MS.gene050076 | MS.gene21136 | 0.81434 | 1.62E-51 | -1.69E-46 |
| MS.gene050099 | MS.gene21136 | 0.852436 | 4.62E-61 | -1.69E-46 |
| MS.gene050128 | MS.gene21136 | 0.853819 | 1.86E-61 | -1.69E-46 |
| MS.gene050301 | MS.gene21136 | 0.920148 | 1.85E-87 | -1.69E-46 |
| MS.gene050397 | MS.gene21136 | 0.811953 | 5.41E-51 | -1.69E-46 |
| MS.gene050432 | MS.gene21136 | 0.81362 | 2.33E-51 | -1.69E-46 |
| MS.gene050516 | MS.gene21136 | 0.817536 | 3.13E-52 | -1.69E-46 |
| MS.gene050558 | MS.gene21136 | 0.811244 | 7.71E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene21136 | 0.829466 | 5.07E-55 | -1.69E-46 |
| MS.gene050767 | MS.gene21136 | 0.800839 | 1.19E-48 | -1.69E-46 |
| MS.gene050770 | MS.gene21136 | 0.804114 | 2.52E-49 | -1.69E-46 |
| MS.gene050783 | MS.gene21136 | 0.818927 | 1.52E-52 | -1.69E-46 |
| MS.gene050812 | MS.gene21136 | 0.814081 | 1.85E-51 | -1.69E-46 |
| MS.gene05101 | MS.gene21136 | 0.856738 | 2.63E-62 | -1.69E-46 |
| MS.gene05105 | MS.gene21136 | 0.804221 | 2.40E-49 | -1.69E-46 |
| MS.gene051255 | MS.gene21136 | 0.805145 | 1.54E-49 | -1.69E-46 |
| MS.gene051360 | MS.gene21136 | 0.829067 | 6.34E-55 | -1.69E-46 |
| MS.gene051387 | MS.gene21136 | 0.800466 | 1.42E-48 | -1.69E-46 |
| MS.gene051471 | MS.gene21136 | 0.853044 | 3.10E-61 | -1.69E-46 |
| MS.gene051582 | MS.gene21136 | 0.809987 | 1.44E-50 | -1.69E-46 |
| MS.gene051662 | MS.gene21136 | 0.812814 | 3.51E-51 | -1.69E-46 |
| MS.gene051663 | MS.gene21136 | 0.865566 | 5.38E-65 | -1.69E-46 |
| MS.gene051860 | MS.gene21136 | 0.845391 | 4.18E-59 | -1.69E-46 |
| MS.gene052078 | MS.gene21136 | 0.857754 | 1.32E-62 | -1.69E-46 |
| MS.gene052178 | MS.gene21136 | 0.835835 | 1.33E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene21136 | 0.891292 | 4.54E-74 | -1.69E-46 |
| MS.gene052207 | MS.gene21136 | 0.843754 | 1.15E-58 | -1.69E-46 |
| MS.gene052253 | MS.gene21136 | 0.835488 | 1.63E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene21136 | 0.857573 | 1.49E-62 | -1.69E-46 |
| MS.gene052326 | MS.gene21136 | 0.866894 | 2.04E-65 | -1.69E-46 |
| MS.gene052340 | MS.gene21136 | 0.854277 | 1.37E-61 | -1.69E-46 |
| MS.gene052421 | MS.gene21136 | 0.800469 | 1.42E-48 | -1.69E-46 |
| MS.gene052485 | MS.gene21136 | 0.853545 | 2.23E-61 | -1.69E-46 |
| MS.gene053073 | MS.gene21136 | 0.805997 | 1.02E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene21136 | 0.845631 | 3.60E-59 | -1.69E-46 |
| MS.gene053209 | MS.gene21136 | 0.828617 | 8.14E-55 | -1.69E-46 |
| MS.gene053557 | MS.gene21136 | 0.829893 | 3.99E-55 | -1.69E-46 |
| MS.gene053559 | MS.gene21136 | 0.822697 | 2.06E-53 | -1.69E-46 |
| MS.gene053577 | MS.gene21136 | 0.809379 | 1.95E-50 | -1.69E-46 |
| MS.gene053813 | MS.gene21136 | 0.823377 | 1.43E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene21136 | 0.891153 | 5.15E-74 | -1.69E-46 |
| MS.gene053907 | MS.gene21136 | 0.807388 | 5.18E-50 | -1.69E-46 |
| MS.gene053928 | MS.gene21136 | 0.875283 | 3.48E-68 | -1.69E-46 |
| MS.gene054010 | MS.gene21136 | 0.847088 | 1.44E-59 | -1.69E-46 |
| MS.gene054011 | MS.gene21136 | 0.855102 | 7.90E-62 | -1.69E-46 |
| MS.gene054012 | MS.gene21136 | 0.839748 | 1.32E-57 | -1.69E-46 |
| MS.gene054013 | MS.gene21136 | 0.837848 | 4.08E-57 | -1.69E-46 |
| MS.gene054123 | MS.gene21136 | 0.912003 | 3.20E-83 | -1.69E-46 |
| MS.gene054349 | MS.gene21136 | 0.813228 | 2.85E-51 | -1.69E-46 |
| MS.gene054376 | MS.gene21136 | 0.820764 | 5.77E-53 | -1.69E-46 |
| MS.gene054473 | MS.gene21136 | 0.825727 | 4.00E-54 | -1.69E-46 |
| MS.gene05455 | MS.gene21136 | 0.874615 | 5.88E-68 | -1.69E-46 |
| MS.gene054802 | MS.gene21136 | 0.815314 | 9.85E-52 | -1.69E-46 |
| MS.gene054803 | MS.gene21136 | 0.816453 | 5.49E-52 | -1.69E-46 |
| MS.gene054804 | MS.gene21136 | 0.816664 | 4.92E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene21136 | 0.824458 | 7.98E-54 | -1.69E-46 |
| MS.gene054942 | MS.gene21136 | 0.811673 | 6.22E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene21136 | 0.837867 | 4.04E-57 | -1.69E-46 |
| MS.gene055277 | MS.gene21136 | 0.86329 | 2.77E-64 | -1.69E-46 |
| MS.gene055390 | MS.gene21136 | 0.900642 | 5.97E-78 | -1.69E-46 |
| MS.gene055412 | MS.gene21136 | 0.802389 | 5.74E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene21136 | 0.892373 | 1.69E-74 | -1.69E-46 |
| MS.gene055428 | MS.gene21136 | 0.860693 | 1.73E-63 | -1.69E-46 |
| MS.gene05553 | MS.gene21136 | 0.828132 | 1.07E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene21136 | 0.887299 | 1.61E-72 | -1.69E-46 |
| MS.gene055666 | MS.gene21136 | 0.805954 | 1.04E-49 | -1.69E-46 |
| MS.gene055712 | MS.gene21136 | 0.838203 | 3.31E-57 | -1.69E-46 |
| MS.gene055930 | MS.gene21136 | 0.825964 | 3.52E-54 | -1.69E-46 |
| MS.gene056191 | MS.gene21136 | 0.838443 | 2.87E-57 | -1.69E-46 |
| MS.gene056407 | MS.gene21136 | 0.883363 | 4.78E-71 | -1.69E-46 |
| MS.gene056410 | MS.gene21136 | 0.851564 | 8.17E-61 | -1.69E-46 |
| MS.gene056609 | MS.gene21136 | 0.832087 | 1.15E-55 | -1.69E-46 |
| MS.gene056612 | MS.gene21136 | 0.854854 | 9.33E-62 | -1.69E-46 |
| MS.gene056659 | MS.gene21136 | 0.838198 | 3.32E-57 | -1.69E-46 |
| MS.gene056902 | MS.gene21136 | 0.842519 | 2.46E-58 | -1.69E-46 |
| MS.gene056931 | MS.gene21136 | 0.830202 | 3.35E-55 | -1.69E-46 |
| MS.gene056933 | MS.gene21136 | 0.831244 | 1.86E-55 | -1.69E-46 |
| MS.gene056935 | MS.gene21136 | 0.812427 | 4.26E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene21136 | 0.860418 | 2.09E-63 | -1.69E-46 |
| MS.gene057121 | MS.gene21136 | 0.841002 | 6.19E-58 | -1.69E-46 |
| MS.gene057123 | MS.gene21136 | 0.803569 | 3.28E-49 | -1.69E-46 |
| MS.gene057245 | MS.gene21136 | 0.82166 | 3.59E-53 | -1.69E-46 |
| MS.gene057295 | MS.gene21136 | 0.812403 | 4.32E-51 | -1.69E-46 |
| MS.gene05733 | MS.gene21136 | 0.809053 | 2.29E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene21136 | 0.821288 | 4.37E-53 | -1.69E-46 |
| MS.gene057439 | MS.gene21136 | 0.842092 | 3.19E-58 | -1.69E-46 |
| MS.gene057448 | MS.gene21136 | 0.875179 | 3.78E-68 | -1.69E-46 |
| MS.gene057449 | MS.gene21136 | 0.867333 | 1.48E-65 | -1.69E-46 |
| MS.gene057450 | MS.gene21136 | 0.884477 | 1.85E-71 | -1.69E-46 |
| MS.gene057469 | MS.gene21136 | 0.862258 | 5.76E-64 | -1.69E-46 |
| MS.gene057749 | MS.gene21136 | 0.830914 | 2.24E-55 | -1.69E-46 |
| MS.gene057754 | MS.gene21136 | 0.812794 | 3.54E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene21136 | 0.83813 | 3.45E-57 | -1.69E-46 |
| MS.gene058002 | MS.gene21136 | 0.889388 | 2.53E-73 | -1.69E-46 |
| MS.gene058082 | MS.gene21136 | 0.835556 | 1.57E-56 | -1.69E-46 |
| MS.gene05811 | MS.gene21136 | 0.895567 | 8.47E-76 | -1.69E-46 |
| MS.gene058142 | MS.gene21136 | 0.848416 | 6.22E-60 | -1.69E-46 |
| MS.gene058276 | MS.gene21136 | 0.800551 | 1.37E-48 | -1.69E-46 |
| MS.gene058293 | MS.gene21136 | 0.857128 | 2.01E-62 | -1.69E-46 |
| MS.gene058365 | MS.gene21136 | 0.86724 | 1.58E-65 | -1.69E-46 |
| MS.gene05842 | MS.gene21136 | 0.840521 | 8.27E-58 | -1.69E-46 |
| MS.gene058660 | MS.gene21136 | 0.877641 | 5.34E-69 | -1.69E-46 |
| MS.gene058700 | MS.gene21136 | 0.801051 | 1.08E-48 | -1.69E-46 |
| MS.gene058710 | MS.gene21136 | 0.800236 | 1.58E-48 | -1.69E-46 |
| MS.gene058787 | MS.gene21136 | 0.812484 | 4.14E-51 | -1.69E-46 |
| MS.gene058845 | MS.gene21136 | 0.802059 | 6.71E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene21136 | 0.844215 | 8.68E-59 | -1.69E-46 |
| MS.gene058928 | MS.gene21136 | 0.819464 | 1.15E-52 | -1.69E-46 |
| MS.gene058949 | MS.gene21136 | 0.875282 | 3.48E-68 | -1.69E-46 |
| MS.gene058993 | MS.gene21136 | 0.84203 | 3.32E-58 | -1.69E-46 |
| MS.gene05907 | MS.gene21136 | 0.904289 | 1.43E-79 | -1.69E-46 |
| MS.gene059228 | MS.gene21136 | 0.810836 | 9.45E-51 | -1.69E-46 |
| MS.gene059285 | MS.gene21136 | 0.805511 | 1.29E-49 | -1.69E-46 |
| MS.gene059294 | MS.gene21136 | 0.814225 | 1.72E-51 | -1.69E-46 |
| MS.gene059342 | MS.gene21136 | 0.806596 | 7.62E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene21136 | 0.829277 | 5.63E-55 | -1.69E-46 |
| MS.gene059518 | MS.gene21136 | 0.857096 | 2.06E-62 | -1.69E-46 |
| MS.gene059597 | MS.gene21136 | 0.877908 | 4.31E-69 | -1.69E-46 |
| MS.gene05959 | MS.gene21136 | 0.859275 | 4.63E-63 | -1.69E-46 |
| MS.gene059676 | MS.gene21136 | 0.884387 | 2.00E-71 | -1.69E-46 |
| MS.gene059688 | MS.gene21136 | 0.850777 | 1.36E-60 | -1.69E-46 |
| MS.gene059692 | MS.gene21136 | 0.861068 | 1.33E-63 | -1.69E-46 |
| MS.gene059695 | MS.gene21136 | 0.862965 | 3.49E-64 | -1.69E-46 |
| MS.gene059708 | MS.gene21136 | 0.852885 | 3.44E-61 | -1.69E-46 |
| MS.gene059711 | MS.gene21136 | 0.806671 | 7.35E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene21136 | 0.848438 | 6.13E-60 | -1.69E-46 |
| MS.gene059894 | MS.gene21136 | 0.856786 | 2.54E-62 | -1.69E-46 |
| MS.gene059899 | MS.gene21136 | 0.807249 | 5.54E-50 | -1.69E-46 |
| MS.gene059974 | MS.gene21136 | 0.822873 | 1.88E-53 | -1.69E-46 |
| MS.gene060005 | MS.gene21136 | 0.846781 | 1.75E-59 | -1.69E-46 |
| MS.gene06037 | MS.gene21136 | 0.873959 | 9.81E-68 | -1.69E-46 |
| MS.gene060407 | MS.gene21136 | 0.835662 | 1.47E-56 | -1.69E-46 |
| MS.gene060495 | MS.gene21136 | 0.851625 | 7.85E-61 | -1.69E-46 |
| MS.gene060496 | MS.gene21136 | 0.828456 | 8.90E-55 | -1.69E-46 |
| MS.gene060559 | MS.gene21136 | 0.842659 | 2.26E-58 | -1.69E-46 |
| MS.gene06090 | MS.gene21136 | 0.820928 | 5.29E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene21136 | 0.884379 | 2.02E-71 | -1.69E-46 |
| MS.gene061051 | MS.gene21136 | -0.852531 | 4.34E-61 | -1.69E-46 |
| MS.gene061159 | MS.gene21136 | 0.818627 | 1.78E-52 | -1.69E-46 |
| MS.gene061200 | MS.gene21136 | 0.805894 | 1.07E-49 | -1.69E-46 |
| MS.gene061265 | MS.gene21136 | 0.800728 | 1.26E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21136.t1 | MTR_1g086050 | 94.108 | 611 | 13 | 2 | 1 | 609 | 1 | 590 | 0.0 | 1160 |
| MS.gene21136.t1 | MTR_3g088555 | 54.545 | 539 | 219 | 4 | 58 | 589 | 43 | 562 | 0.0 | 560 |
| MS.gene21136.t1 | MTR_3g088555 | 54.545 | 539 | 219 | 4 | 58 | 589 | 43 | 562 | 0.0 | 560 |
| MS.gene21136.t1 | MTR_3g088555 | 54.545 | 539 | 219 | 4 | 58 | 589 | 43 | 562 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21136.t1 | AT4G01800 | 78.413 | 630 | 87 | 4 | 1 | 609 | 1 | 602 | 0.0 | 977 |
| MS.gene21136.t1 | AT4G01800 | 82.542 | 590 | 78 | 3 | 24 | 609 | 33 | 601 | 0.0 | 977 |
| MS.gene21136.t1 | AT4G01800 | 71.622 | 666 | 87 | 5 | 1 | 609 | 1 | 621 | 0.0 | 917 |
| MS.gene21136.t1 | AT1G21650 | 53.971 | 554 | 227 | 5 | 45 | 589 | 41 | 575 | 0.0 | 566 |
| MS.gene21136.t1 | AT1G21650 | 53.971 | 554 | 227 | 5 | 45 | 589 | 41 | 575 | 0.0 | 566 |
| MS.gene21136.t1 | AT1G21650 | 55.534 | 515 | 203 | 3 | 82 | 589 | 827 | 1322 | 4.55e-180 | 555 |
Find 138 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCGGTAATGCTGAATTTA+TGG | 0.191615 | 1.4:-67959715 | MS.gene21136:CDS |
| TGTTACTGTTAATGATTATT+TGG | 0.193560 | 1.4:-67964997 | MS.gene21136:CDS |
| ACTCTGCACATTCCATAATT+TGG | 0.196132 | 1.4:+67964390 | None:intergenic |
| CCTTTGCTTCAACTGCTTGA+TGG | 0.218717 | 1.4:+67960832 | None:intergenic |
| AAGATGAACCTGGTAGGTTT+AGG | 0.242133 | 1.4:+67966583 | None:intergenic |
| GAGTTCAGTGTGATATTAAA+AGG | 0.251125 | 1.4:+67964412 | None:intergenic |
| ACTTCTGCTTCGCTGTGTTT+TGG | 0.279166 | 1.4:+67966521 | None:intergenic |
| CCAGTGTCACAGTTTCATTT+TGG | 0.279563 | 1.4:+67960796 | None:intergenic |
| CAACCTGCAGAAAGAAATTC+TGG | 0.280198 | 1.4:+67960760 | None:intergenic |
| ATCGGTTCTAATTTCTGAAC+AGG | 0.284973 | 1.4:-67962900 | MS.gene21136:CDS |
| TCACACTGAACTCCAAATTA+TGG | 0.300923 | 1.4:-67964402 | MS.gene21136:CDS |
| AGCGAAGATTTCTAAACTTT+CGG | 0.304406 | 1.4:-67966376 | MS.gene21136:CDS |
| TGTTGAGGAGCTTGTCATTA+GGG | 0.305411 | 1.4:-67964368 | MS.gene21136:CDS |
| AGGTATGGTGGAGCTTTAAT+TGG | 0.309017 | 1.4:-67959660 | MS.gene21136:CDS |
| AGATGAACCTGGTAGGTTTA+GGG | 0.315163 | 1.4:+67966584 | None:intergenic |
| CCATTTGATGTTCAGCTGAT+AGG | 0.316479 | 1.4:-67965890 | MS.gene21136:intron |
| CCAGTCATGCCACATAGTTT+TGG | 0.318412 | 1.4:+67960638 | None:intergenic |
| GCTTCCCTCGGTGGTTTGTT+AGG | 0.321252 | 1.4:-67966480 | MS.gene21136:CDS |
| CTAATTGTTGATGAGTTTAC+TGG | 0.327253 | 1.4:-67962734 | MS.gene21136:CDS |
| TAGCACAGAGTGGTCGTCTT+GGG | 0.356860 | 1.4:-67959788 | MS.gene21136:CDS |
| TAAGAGACCTTTCTTATCAT+AGG | 0.359157 | 1.4:+67960542 | None:intergenic |
| GTGTTGAGGAGCTTGTCATT+AGG | 0.364614 | 1.4:-67964369 | MS.gene21136:CDS |
| ATTCAAATAAGCTGGCAAAA+TGG | 0.370437 | 1.4:+67965046 | None:intergenic |
| CGCTTTCTTGGAATGAAGGT+TGG | 0.373359 | 1.4:-67964939 | MS.gene21136:CDS |
| CGTTCCACGGCCAGCCATAT+TGG | 0.381358 | 1.4:+67959749 | None:intergenic |
| ATCTCTAGAATGCACAAAAC+TGG | 0.382093 | 1.4:-67960155 | MS.gene21136:CDS |
| GGCCAAGTTCCACGCTTTCT+TGG | 0.383596 | 1.4:-67964951 | MS.gene21136:CDS |
| GAAGCTTCCAAGAGAGTTCT+CGG | 0.394662 | 1.4:-67965920 | MS.gene21136:CDS |
| TTATCACTGGGTTTCTCAGC+AGG | 0.419688 | 1.4:+67964268 | None:intergenic |
| GCTAAGAGAACGTGCTCAAA+AGG | 0.420888 | 1.4:-67966325 | MS.gene21136:CDS |
| AGAACTCCACTCATTATATC+AGG | 0.424932 | 1.4:-67964292 | MS.gene21136:CDS |
| CCTATCAGCTGAACATCAAA+TGG | 0.425780 | 1.4:+67965890 | None:intergenic |
| TTACCAGAATTTCTTTCTGC+AGG | 0.426833 | 1.4:-67960763 | MS.gene21136:intron |
| AGCCTTGTAATATTTATCAC+TGG | 0.429359 | 1.4:+67964255 | None:intergenic |
| TGTTAATGTTATCAATGGAT+TGG | 0.437166 | 1.4:-67966400 | MS.gene21136:CDS |
| TTCTTTGTCTGAGCAATTGA+AGG | 0.438055 | 1.4:-67960090 | MS.gene21136:CDS |
| AACTTTCGGATTCTGAACTA+AGG | 0.438919 | 1.4:-67966362 | MS.gene21136:CDS |
| GCTTATTTGAATGCATTAGT+TGG | 0.440024 | 1.4:-67965035 | MS.gene21136:CDS |
| TCCACGCTTTCTTGGAATGA+AGG | 0.442897 | 1.4:-67964943 | MS.gene21136:CDS |
| CCAAAACTATGTGGCATGAC+TGG | 0.442944 | 1.4:-67960638 | MS.gene21136:CDS |
| TGCTCAAAAGGGAGAATCCT+TGG | 0.444930 | 1.4:-67966313 | MS.gene21136:CDS |
| ACGAAGACCGAGAACTCTCT+TGG | 0.456659 | 1.4:+67965913 | None:intergenic |
| TTCCAAGAAAGCGTGGAACT+TGG | 0.458167 | 1.4:+67964949 | None:intergenic |
| GCAACTGTTAATGTTATCAA+TGG | 0.461385 | 1.4:-67966405 | MS.gene21136:CDS |
| ATATTCAAAGGAAATGATAC+TGG | 0.464613 | 1.4:-67966453 | MS.gene21136:CDS |
| CTTATTTGAATGCATTAGTT+GGG | 0.464849 | 1.4:-67965034 | MS.gene21136:CDS |
| GGCTCGGCGTGATTGCGAAT+GGG | 0.466623 | 1.4:-67964976 | MS.gene21136:CDS |
| TCTGAGCAATTGAAGGAAGC+TGG | 0.469463 | 1.4:-67960083 | MS.gene21136:CDS |
| TGGCTCGGCGTGATTGCGAA+TGG | 0.470475 | 1.4:-67964977 | MS.gene21136:CDS |
| GCCTTGTAATATTTATCACT+GGG | 0.474465 | 1.4:+67964256 | None:intergenic |
| CCAAAATGAAACTGTGACAC+TGG | 0.475117 | 1.4:-67960796 | MS.gene21136:CDS |
| ATATGATCCACGAGAACAAT+GGG | 0.479516 | 1.4:-67962837 | MS.gene21136:CDS |
| CTCTCTACTGATAGGGGAGA+AGG | 0.483742 | 1.4:-67960869 | MS.gene21136:intron |
| ACTGGCCGACCTGTGCTTGT+TGG | 0.488529 | 1.4:-67960137 | MS.gene21136:CDS |
| TCCCTCGGTGGTTTGTTAGG+TGG | 0.497007 | 1.4:-67966477 | MS.gene21136:CDS |
| TCAGGGCTACTAGAGGGAAA+TGG | 0.499495 | 1.4:-67960196 | MS.gene21136:CDS |
| CTACATAATTCGCGGAAAAG+AGG | 0.500002 | 1.4:-67962759 | MS.gene21136:CDS |
| TGTGACAATTGCCACCAATA+TGG | 0.500341 | 1.4:-67959763 | MS.gene21136:CDS |
| TCGGCGACGGTTGCTTCCCT+CGG | 0.506098 | 1.4:-67966492 | MS.gene21136:CDS |
| CAAAACCAGAAAATGTTGAG+AGG | 0.507992 | 1.4:-67959824 | MS.gene21136:CDS |
| CTTATCATAGGTTTGTTCGT+AGG | 0.509142 | 1.4:+67960554 | None:intergenic |
| ACTAATGCATTCAAATAAGC+TGG | 0.509581 | 1.4:+67965038 | None:intergenic |
| CGTGGAACGGATATAATCCT+TGG | 0.517507 | 1.4:-67959735 | MS.gene21136:CDS |
| TTGAATGCATTAGTTGGGAA+GGG | 0.519639 | 1.4:-67965029 | MS.gene21136:CDS |
| GCCACCAATATGGCTGGCCG+TGG | 0.521908 | 1.4:-67959753 | MS.gene21136:CDS |
| TGGAAACGGAAGCTGAATTG+AGG | 0.523329 | 1.4:+67966541 | None:intergenic |
| TTGTTAGGTGGAATATTCAA+AGG | 0.524935 | 1.4:-67966465 | MS.gene21136:CDS |
| CGCAAAACCCTAAACCTACC+AGG | 0.528449 | 1.4:-67966591 | MS.gene21136:CDS |
| CTGTTAATGATTATTTGGCT+CGG | 0.530261 | 1.4:-67964992 | MS.gene21136:CDS |
| GTAGCACAGAGTGGTCGTCT+TGG | 0.531698 | 1.4:-67959789 | MS.gene21136:CDS |
| TTTGAATGCATTAGTTGGGA+AGG | 0.532840 | 1.4:-67965030 | MS.gene21136:CDS |
| GAACAAACCTATGATAAGAA+AGG | 0.533736 | 1.4:-67960549 | MS.gene21136:intron |
| GCTGAAATGAGGACTGGAGA+AGG | 0.534399 | 1.4:-67965083 | MS.gene21136:CDS |
| TATGTCACTAATAGCGAGCT+AGG | 0.537308 | 1.4:-67964532 | MS.gene21136:CDS |
| GATGTAAACTACATAATTCG+CGG | 0.537871 | 1.4:-67962767 | MS.gene21136:CDS |
| TAGGGGAGAAGGTGGAGTGA+TGG | 0.538677 | 1.4:-67960858 | MS.gene21136:CDS |
| CAGAAGTCGCCGATCGGCGA+CGG | 0.541971 | 1.4:-67966505 | MS.gene21136:CDS |
| GTGCGAAGTTGTGGAGGTGA+AGG | 0.545716 | 1.4:+67966635 | None:intergenic |
| TATGACAAGTGAGCAAAGAA+AGG | 0.546673 | 1.4:-67964578 | MS.gene21136:CDS |
| GTTTACTGGTCGAGTAATGC+AGG | 0.548757 | 1.4:-67962720 | MS.gene21136:intron |
| CTAAGAGAACGTGCTCAAAA+GGG | 0.550884 | 1.4:-67966324 | MS.gene21136:CDS |
| CTGCTAAGAAAAGATGAACC+TGG | 0.553261 | 1.4:+67966573 | None:intergenic |
| GGGAAGCAACCGTCGCCGAT+CGG | 0.553965 | 1.4:+67966496 | None:intergenic |
| CGGCGTGATTGCGAATGGGT+TGG | 0.554932 | 1.4:-67964972 | MS.gene21136:CDS |
| AAAGGAAGAATTACTTTCCG+TGG | 0.554997 | 1.4:+67964483 | None:intergenic |
| TATGAGACATACGCTGGATG+AGG | 0.556542 | 1.4:+67964916 | None:intergenic |
| TACAGGCAAAAGAGAATCCA+AGG | 0.556677 | 1.4:+67966296 | None:intergenic |
| GAGATAGCTGAAATGAGGAC+TGG | 0.556899 | 1.4:-67965089 | MS.gene21136:CDS |
| TAAATTCAGCATTACCGCCA+AGG | 0.558074 | 1.4:+67959718 | None:intergenic |
| CAAGCAGTTGAAGCAAAGGA+AGG | 0.561149 | 1.4:-67960828 | MS.gene21136:CDS |
| TCCACGGCCAGCCATATTGG+TGG | 0.561781 | 1.4:+67959752 | None:intergenic |
| CAATATGGCTGGCCGTGGAA+CGG | 0.569076 | 1.4:-67959748 | MS.gene21136:CDS |
| GTTGAGGAGCTTGTCATTAG+GGG | 0.570562 | 1.4:-67964367 | MS.gene21136:CDS |
| AGCTTCTCTTACAACAGCAA+AGG | 0.572557 | 1.4:+67965937 | None:intergenic |
| TTACAGTTCCCAAAACTATG+TGG | 0.574085 | 1.4:-67960647 | MS.gene21136:intron |
| AGCACAGAGTGGTCGTCTTG+GGG | 0.575061 | 1.4:-67959787 | MS.gene21136:CDS |
| CCATCAAGCAGTTGAAGCAA+AGG | 0.575427 | 1.4:-67960832 | MS.gene21136:CDS |
| ATTAAAGCTCCACCATACCT+TGG | 0.575455 | 1.4:+67959663 | None:intergenic |
| ATGTTGCGAGTGCGAAGTTG+TGG | 0.579624 | 1.4:+67966626 | None:intergenic |
| ATGATACTGGAGAAGCTACA+AGG | 0.579932 | 1.4:-67966440 | MS.gene21136:CDS |
| ATGGAGACTTTACCTCATGC+GGG | 0.583215 | 1.4:+67960057 | None:intergenic |
| CTGAAATGAGGACTGGAGAA+GGG | 0.583737 | 1.4:-67965082 | MS.gene21136:CDS |
| CTAGTCGTGCCAACAAGCAC+AGG | 0.584383 | 1.4:+67960128 | None:intergenic |
| ACTTTCGGATTCTGAACTAA+GGG | 0.585748 | 1.4:-67966361 | MS.gene21136:CDS |
| GCGACGGTTGCTTCCCTCGG+TGG | 0.586380 | 1.4:-67966489 | MS.gene21136:CDS |
| CGAAGTTGTGGAGGTGAAGG+AGG | 0.586410 | 1.4:+67966638 | None:intergenic |
| CAATTATTGTGTCATTGATG+AGG | 0.587371 | 1.4:-67964341 | MS.gene21136:CDS |
| AATGAAGCCCATTGTTCTCG+TGG | 0.587490 | 1.4:+67962830 | None:intergenic |
| ACAATTGCCACCAATATGGC+TGG | 0.589742 | 1.4:-67959759 | MS.gene21136:CDS |
| GAAATGGCGTGCAGTTGTTG+TGG | 0.590328 | 1.4:-67960180 | MS.gene21136:CDS |
| AGGGAGAGATAGCTGAAATG+AGG | 0.593714 | 1.4:-67965094 | MS.gene21136:CDS |
| GTAATGTATATCACGTTCAA+AGG | 0.596151 | 1.4:+67964216 | None:intergenic |
| ACCCAGTGATAAATATTACA+AGG | 0.601708 | 1.4:-67964257 | MS.gene21136:CDS |
| AAAACCAGAAAATGTTGAGA+GGG | 0.601818 | 1.4:-67959823 | MS.gene21136:CDS |
| GCGAAGCAGAAGTCGCCGAT+CGG | 0.605685 | 1.4:-67966511 | MS.gene21136:CDS |
| AATGGAGACTTTACCTCATG+CGG | 0.606353 | 1.4:+67960056 | None:intergenic |
| TTCGTGAGATACTGATGCCA+AGG | 0.606540 | 1.4:-67959680 | MS.gene21136:CDS |
| CTTAAGAGACAATCTTGCCA+CGG | 0.608075 | 1.4:-67964500 | MS.gene21136:CDS |
| ACCTTCATTCCAAGAAAGCG+TGG | 0.609912 | 1.4:+67964942 | None:intergenic |
| GAGATACTGATGCCAAGGTA+TGG | 0.612892 | 1.4:-67959675 | MS.gene21136:CDS |
| GGAACGGATATAATCCTTGG+CGG | 0.614653 | 1.4:-67959732 | MS.gene21136:CDS |
| TCGGTTCTAATTTCTGAACA+GGG | 0.614657 | 1.4:-67962899 | MS.gene21136:CDS |
| TATATGATCCACGAGAACAA+TGG | 0.619135 | 1.4:-67962838 | MS.gene21136:CDS |
| AAGCAGTTGAAGCAAAGGAA+GGG | 0.629187 | 1.4:-67960827 | MS.gene21136:CDS |
| TCTACTGATAGGGGAGAAGG+TGG | 0.629536 | 1.4:-67960866 | MS.gene21136:intron |
| TAAGAAAAGATGAACCTGGT+AGG | 0.633957 | 1.4:+67966577 | None:intergenic |
| GCAGGTCCTGATATAATGAG+TGG | 0.646064 | 1.4:+67964286 | None:intergenic |
| CAAGGATTATATCCGTTCCA+CGG | 0.652188 | 1.4:+67959736 | None:intergenic |
| ATACTGATGCCAAGGTATGG+TGG | 0.652365 | 1.4:-67959672 | MS.gene21136:CDS |
| TTGCGAGTGCGAAGTTGTGG+AGG | 0.655301 | 1.4:+67966629 | None:intergenic |
| GGAAGCTGGAATCCCGCATG+AGG | 0.658899 | 1.4:-67960069 | MS.gene21136:intron |
| GTAATGCTGAATTTATGGCA+CGG | 0.663025 | 1.4:-67959710 | MS.gene21136:CDS |
| GACTGGAGAAGGGAAGACAC+TGG | 0.665036 | 1.4:-67965072 | MS.gene21136:CDS |
| TCCACCTAACAAACCACCGA+GGG | 0.667657 | 1.4:+67966476 | None:intergenic |
| ATGGAATGTGCAGAGTGTTG+AGG | 0.678756 | 1.4:-67964383 | MS.gene21136:CDS |
| TCGTGCCAACAAGCACAGGT+CGG | 0.690297 | 1.4:+67960132 | None:intergenic |
| GCAGAAATTGTAGCACAGAG+TGG | 0.700331 | 1.4:-67959798 | MS.gene21136:CDS |
| TTCCACCTAACAAACCACCG+AGG | 0.756672 | 1.4:+67966475 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 67959644 | 67966682 | 67959644 | ID=MS.gene21136 |
| chr1.4 | mRNA | 67959644 | 67966682 | 67959644 | ID=MS.gene21136.t1;Parent=MS.gene21136 |
| chr1.4 | exon | 67966299 | 67966682 | 67966299 | ID=MS.gene21136.t1.exon1;Parent=MS.gene21136.t1 |
| chr1.4 | CDS | 67966299 | 67966682 | 67966299 | ID=cds.MS.gene21136.t1;Parent=MS.gene21136.t1 |
| chr1.4 | exon | 67965891 | 67965963 | 67965891 | ID=MS.gene21136.t1.exon2;Parent=MS.gene21136.t1 |
| chr1.4 | CDS | 67965891 | 67965963 | 67965891 | ID=cds.MS.gene21136.t1;Parent=MS.gene21136.t1 |
| chr1.4 | exon | 67964928 | 67965134 | 67964928 | ID=MS.gene21136.t1.exon3;Parent=MS.gene21136.t1 |
| chr1.4 | CDS | 67964928 | 67965134 | 67964928 | ID=cds.MS.gene21136.t1;Parent=MS.gene21136.t1 |
| chr1.4 | exon | 67964497 | 67964604 | 67964497 | ID=MS.gene21136.t1.exon4;Parent=MS.gene21136.t1 |
| chr1.4 | CDS | 67964497 | 67964604 | 67964497 | ID=cds.MS.gene21136.t1;Parent=MS.gene21136.t1 |
| chr1.4 | exon | 67964213 | 67964445 | 67964213 | ID=MS.gene21136.t1.exon5;Parent=MS.gene21136.t1 |
| chr1.4 | CDS | 67964213 | 67964445 | 67964213 | ID=cds.MS.gene21136.t1;Parent=MS.gene21136.t1 |
| chr1.4 | exon | 67962721 | 67962939 | 67962721 | ID=MS.gene21136.t1.exon6;Parent=MS.gene21136.t1 |
| chr1.4 | CDS | 67962721 | 67962939 | 67962721 | ID=cds.MS.gene21136.t1;Parent=MS.gene21136.t1 |
| chr1.4 | exon | 67960764 | 67960877 | 67960764 | ID=MS.gene21136.t1.exon7;Parent=MS.gene21136.t1 |
| chr1.4 | CDS | 67960764 | 67960877 | 67960764 | ID=cds.MS.gene21136.t1;Parent=MS.gene21136.t1 |
| chr1.4 | exon | 67960550 | 67960663 | 67960550 | ID=MS.gene21136.t1.exon8;Parent=MS.gene21136.t1 |
| chr1.4 | CDS | 67960550 | 67960663 | 67960550 | ID=cds.MS.gene21136.t1;Parent=MS.gene21136.t1 |
| chr1.4 | exon | 67960070 | 67960237 | 67960070 | ID=MS.gene21136.t1.exon9;Parent=MS.gene21136.t1 |
| chr1.4 | CDS | 67960070 | 67960237 | 67960070 | ID=cds.MS.gene21136.t1;Parent=MS.gene21136.t1 |
| chr1.4 | exon | 67959644 | 67959856 | 67959644 | ID=MS.gene21136.t1.exon10;Parent=MS.gene21136.t1 |
| chr1.4 | CDS | 67959644 | 67959856 | 67959644 | ID=cds.MS.gene21136.t1;Parent=MS.gene21136.t1 |
| Gene Sequence |
| Protein sequence |
