AlfalfaGEDB | MS.gene32626

M. sativa cultivar XinJiangDaYe / MS.gene32626

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00847.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32626.t1	AES73659.1	97.1	210	4	1	1	210	1	208	8.80E-112	412.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32626.t1	Q3E958	60.8	199	57	3	5	203	4	181	2.4e-57	223.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32626.t1	G7JB31	97.1	210	4	1	1	210	1	208	6.3e-112	412.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene32626.t1	TF	AP2/ERF-ERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene32626	0.82298	1.77E-53	-1.69E-46
MS.gene049153	MS.gene32626	0.825677	4.12E-54	-1.69E-46
MS.gene049260	MS.gene32626	0.807558	4.77E-50	-1.69E-46
MS.gene049346	MS.gene32626	0.838115	3.48E-57	-1.69E-46
MS.gene049351	MS.gene32626	0.824455	8.00E-54	-1.69E-46
MS.gene049491	MS.gene32626	0.819867	9.27E-53	-1.69E-46
MS.gene049661	MS.gene32626	0.830477	2.87E-55	-1.69E-46
MS.gene049662	MS.gene32626	0.824542	7.63E-54	-1.69E-46
MS.gene049681	MS.gene32626	0.875691	2.52E-68	-1.69E-46
MS.gene049758	MS.gene32626	0.850208	1.97E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene072897	MS.gene32626	PPI
MS.gene32626	MS.gene014829	PPI
MS.gene32626	MS.gene67058	PPI
MS.gene32626	MS.gene072897	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32626.t1	MTR_3g107380	97.143	210	4	1	1	210	1	208	4.39e-153	422
MS.gene32626.t1	MTR_4g114570	57.692	208	77	4	4	210	3	200	4.25e-72	218
MS.gene32626.t1	MTR_4g010640	56.542	214	74	3	4	201	3	213	1.37e-69	211
MS.gene32626.t1	MTR_1g012470	62.189	201	70	4	1	199	1	197	1.69e-69	211
MS.gene32626.t1	MTR_2g103700	58.794	199	55	4	4	201	3	175	4.15e-67	204
MS.gene32626.t1	MTR_4g008860	52.174	115	36	2	1	115	1	96	1.76e-29	108
MS.gene32626.t1	MTR_3g106290	69.118	68	21	0	1	68	1	68	7.38e-29	107
MS.gene32626.t1	MTR_8g092460	62.903	62	23	0	3	64	140	201	2.68e-21	89.7
MS.gene32626.t1	MTR_1g090170	48.515	101	46	2	6	106	150	244	1.18e-20	88.2
MS.gene32626.t1	MTR_4g086220	61.111	72	25	1	8	76	96	167	1.50e-20	86.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32626.t1	AT5G25390	60.500	200	58	3	4	203	3	181	2.90e-77	230
MS.gene32626.t1	AT5G25390	59.000	200	58	4	4	203	3	178	7.96e-73	219
MS.gene32626.t1	AT1G15360	59.596	198	79	1	4	201	3	199	6.49e-71	214
MS.gene32626.t1	AT1G15360	59.596	198	79	1	4	201	3	199	6.49e-71	214
MS.gene32626.t1	AT5G11190	58.291	199	70	3	4	201	3	189	9.78e-69	208
MS.gene32626.t1	AT5G25190	39.500	200	88	5	1	200	1	167	4.12e-30	110
MS.gene32626.t1	AT2G35700	62.500	64	24	0	1	64	38	101	3.05e-21	87.4
MS.gene32626.t1	AT5G53290	64.516	62	22	0	4	65	121	182	4.71e-21	89.7
MS.gene32626.t1	AT4G13620	63.077	65	24	0	5	69	229	293	6.72e-21	89.7
MS.gene32626.t1	AT1G36060	56.944	72	31	0	6	77	141	212	1.15e-20	88.2

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Find 52 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACACACTATTGATGG+TGG	0.638087	3.1:+84980207	MS.gene32626:CDS
AAACAAGTAAGTGATGGAGA+AGG	0.587309	3.1:-84980051	None:intergenic
AAATGAGGGAATTACAACAA+AGG	0.637685	3.1:-84979669	None:intergenic
AACAAGTAAGTGATGGAGAA+GGG	0.581544	3.1:-84980050	None:intergenic
AATGAGGGAATTACAACAAA+GGG	0.528956	3.1:-84979668	None:intergenic
ACCACATTCTGATTCTAATT+GGG	0.444505	3.1:+84980125	MS.gene32626:CDS
ACCACTACCACCATTATAAG+GGG	0.634975	3.1:-84979950	None:intergenic
ACCCAATTAGAATCAGAATG+TGG	0.683688	3.1:-84980126	None:intergenic
ACCCCTTATAATGGTGGTAG+TGG	0.519879	3.1:+84979949	MS.gene32626:CDS
ACTATAGAGTCAGAAGAGAT+AGG	0.438321	3.1:+84980180	MS.gene32626:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAGGGAATTACAACAA+AGG	-	chr3.1:84979672-84979691	None:intergenic	30.0%
AATGAGGGAATTACAACAAA+GGG	-	chr3.1:84979671-84979690	None:intergenic	30.0%
ACCACATTCTGATTCTAATT+GGG	+	chr3.1:84980125-84980144	MS.gene32626:CDS	30.0%
ATTAATGTTGCAGAAAGAGA+AGG	+	chr3.1:84979791-84979810	MS.gene32626:intron	30.0%
TCAAAACAACACACTATTGA+TGG	+	chr3.1:84980204-84980223	MS.gene32626:CDS	30.0%
TTAATGTTGCAGAAAGAGAA+GGG	+	chr3.1:84979792-84979811	MS.gene32626:intron	30.0%
AAACAACACACTATTGATGG+TGG	+	chr3.1:84980207-84980226	MS.gene32626:CDS	35.0%
ACCCAATTAGAATCAGAATG+TGG	-	chr3.1:84980129-84980148	None:intergenic	35.0%
ACTATAGAGTCAGAAGAGAT+AGG	+	chr3.1:84980180-84980199	MS.gene32626:CDS	35.0%
ATAATTCTCACATTGGAGTG+TGG	+	chr3.1:84980088-84980107	MS.gene32626:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	84979594	84980353	84979594	ID=MS.gene32626
chr3.1	mRNA	84979594	84980353	84979594	ID=MS.gene32626.t1;Parent=MS.gene32626
chr3.1	exon	84979594	84979676	84979594	ID=MS.gene32626.t1.exon1;Parent=MS.gene32626.t1
chr3.1	CDS	84979594	84979676	84979594	ID=cds.MS.gene32626.t1;Parent=MS.gene32626.t1
chr3.1	exon	84979804	84980353	84979804	ID=MS.gene32626.t1.exon2;Parent=MS.gene32626.t1
chr3.1	CDS	84979804	84980353	84979804	ID=cds.MS.gene32626.t1;Parent=MS.gene32626.t1

Gene Sequence

>MS.gene32626

ATGGTACAACAAACAAAGAAGTTCAGAGGAGTCAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCTTTGTTGTAATTCCCTCATTTAACTCTATATCAATGAAATCCACACAATGCACCTACATCTTATATTATATTATGTACATGTTATTTATTTATATATAGTTGCTTTTTTGTGTTTGATAAATTAATGTTGCAGAAAGAGAAGGGTGTGGTTAGGAACATTTGAGACAGCAGAGGCAGCAGCAAGAGCATATGATCAAGCTGCAATTTTGATGAATGGTCAAAGTGCAAAGACTAATTTTCCTGTGTCAAAGAATCAAGGTGAAGAAGTTGCTAGTGACACCCCTTATAATGGTGGTAGTGGTAGTGGTGATGATTCTTTCTTGTCTCCCAAGGCACTCTCTGAGCTACTCAGCACAAAGCTTAGAAAGTATTGCAAAGACCCTTCTCCATCACTTACTTGTTTGAGGCTAGATAATGATAATTCTCACATTGGAGTGTGGCAAAAAAGAGCTGGACCACATTCTGATTCTAATTGGGTCATGAGGGTTGAACTTGGTGGGAAGAAAAAGACTATAGAGTCAGAAGAGATAGGATCAAAACAACACACTATTGATGGTGGTAATAATGGTAATGCTGATAATGAAAATAGGTTGGTAGTAGAAGAAGAGGAGAGAGTTGCTTTGCAGATGATTGAAGAGTTACTTAATTGGAACTATCCATGTGGATCAACTTCAAGTAATTAA

Protein sequence

>MS.gene32626.t1

MVQQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQSAKTNFPVSKNQGEEVASDTPYNGGSGSGDDSFLSPKALSELLSTKLRKYCKDPSPSLTCLRLDNDNSHIGVWQKRAGPHSDSNWVMRVELGGKKKTIESEEIGSKQHTIDGGNNGNADNENRLVVEEEERVALQMIEELLNWNYPCGSTSSN