AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072897


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072897.t1 MTR_3g107380 97.143 210 4 1 1 210 1 208 4.39e-153 422
MS.gene072897.t1 MTR_4g114570 57.692 208 77 4 4 210 3 200 4.25e-72 218
MS.gene072897.t1 MTR_4g010640 56.542 214 74 3 4 201 3 213 1.37e-69 211
MS.gene072897.t1 MTR_1g012470 62.189 201 70 4 1 199 1 197 1.69e-69 211
MS.gene072897.t1 MTR_2g103700 58.794 199 55 4 4 201 3 175 4.15e-67 204
MS.gene072897.t1 MTR_4g008860 52.174 115 36 2 1 115 1 96 1.76e-29 108
MS.gene072897.t1 MTR_3g106290 69.118 68 21 0 1 68 1 68 7.38e-29 107
MS.gene072897.t1 MTR_8g092460 62.903 62 23 0 3 64 140 201 2.68e-21 89.7
MS.gene072897.t1 MTR_1g090170 48.515 101 46 2 6 106 150 244 1.18e-20 88.2
MS.gene072897.t1 MTR_4g086220 61.111 72 25 1 8 76 96 167 1.50e-20 86.3
MS.gene072897.t1 MTR_1g090170 48.515 101 46 2 6 106 237 331 2.27e-20 88.2
MS.gene072897.t1 MTR_3g074130 60.606 66 26 0 5 70 147 212 3.00e-20 87.4
MS.gene072897.t1 MTR_3g053690 50.000 86 37 1 7 86 26 111 3.11e-20 85.5
MS.gene072897.t1 MTR_5g075570 43.299 97 47 2 8 96 124 220 3.23e-20 86.3
MS.gene072897.t1 MTR_4g086165 66.102 59 20 0 7 65 81 139 5.60e-20 84.3
MS.gene072897.t1 MTR_7g020980 61.538 65 22 1 3 64 43 107 8.33e-20 83.2
MS.gene072897.t1 MTR_4g086190 67.241 58 19 0 8 65 96 153 1.12e-19 84.0
MS.gene072897.t1 MTR_7g021010 58.209 67 25 1 1 64 2 68 1.20e-19 81.6
MS.gene072897.t1 MTR_7g021010 61.538 65 22 1 3 64 43 107 1.44e-19 82.4
MS.gene072897.t1 MTR_5g062700 60.000 65 26 0 5 69 170 234 1.51e-19 85.9
MS.gene072897.t1 MTR_4g086160 65.517 58 20 0 8 65 96 153 1.71e-19 83.6
MS.gene072897.t1 MTR_4g078710 57.746 71 27 1 8 78 28 95 2.36e-19 82.8
MS.gene072897.t1 MTR_2g078680 59.375 64 26 0 2 65 25 88 2.64e-19 82.4
MS.gene072897.t1 MTR_3g090760 62.903 62 23 0 2 63 107 168 2.67e-19 84.7
MS.gene072897.t1 MTR_5g009620 55.128 78 32 1 6 80 110 187 2.88e-19 84.3
MS.gene072897.t1 MTR_4g035430 63.158 57 21 0 8 64 32 88 5.17e-19 82.0
MS.gene072897.t1 MTR_8g090350 54.412 68 31 0 3 70 108 175 6.22e-19 83.2
MS.gene072897.t1 MTR_2g014340 65.517 58 20 0 8 65 19 76 6.25e-19 81.3
MS.gene072897.t1 MTR_7g046260 63.158 57 21 0 8 64 61 117 6.45e-19 82.0
MS.gene072897.t1 MTR_4g100650 54.930 71 32 0 8 78 74 144 6.51e-19 82.4
MS.gene072897.t1 MTR_6g088405 53.521 71 33 0 8 78 44 114 6.75e-19 81.6
MS.gene072897.t1 MTR_8g013860 52.113 71 34 0 8 78 47 117 1.11e-18 80.9
MS.gene072897.t1 MTR_3g110205 54.930 71 32 0 8 78 43 113 1.20e-18 80.1
MS.gene072897.t1 MTR_3g102100 43.529 85 48 0 3 87 40 124 1.61e-18 79.7
MS.gene072897.t1 MTR_8g102800 63.158 57 21 0 8 64 37 93 1.84e-18 80.9
MS.gene072897.t1 MTR_2g090235 57.143 63 27 0 2 64 212 274 2.03e-18 82.8
MS.gene072897.t1 MTR_5g085100 58.065 62 26 0 7 68 45 106 2.26e-18 81.3
MS.gene072897.t1 MTR_5g012910 52.113 71 34 0 8 78 28 98 2.95e-18 79.0
MS.gene072897.t1 MTR_7g117690 57.895 57 24 0 8 64 28 84 2.96e-18 79.0
MS.gene072897.t1 MTR_8g099215 56.522 69 28 1 1 67 100 168 3.92e-18 81.3
MS.gene072897.t1 MTR_7g011630 60.317 63 24 1 6 67 40 102 4.88e-18 82.0
MS.gene072897.t1 MTR_6g012970 60.317 63 24 1 6 67 36 98 5.65e-18 81.6
MS.gene072897.t1 MTR_7g085810 62.712 59 22 0 5 63 27 85 5.68e-18 80.1
MS.gene072897.t1 MTR_5g083340 63.793 58 21 0 7 64 84 141 7.52e-18 81.3
MS.gene072897.t1 MTR_2g089170 56.164 73 30 2 8 78 65 137 7.57e-18 78.2
MS.gene072897.t1 MTR_2g101340 59.649 57 23 0 8 64 41 97 8.59e-18 78.6
MS.gene072897.t1 MTR_2g435590 63.158 57 21 0 8 64 96 152 9.58e-18 79.3
MS.gene072897.t1 MTR_4g100380 59.701 67 26 1 6 71 143 209 1.17e-17 79.3
MS.gene072897.t1 MTR_8g006410 59.649 57 23 0 8 64 52 108 1.18e-17 78.2
MS.gene072897.t1 MTR_1g019110 50.725 69 32 1 6 72 42 110 1.20e-17 77.4
MS.gene072897.t1 MTR_1g087920 58.065 62 26 0 3 64 72 133 1.21e-17 79.7
MS.gene072897.t1 MTR_5g085070 56.452 62 27 0 7 68 50 111 1.28e-17 79.3
MS.gene072897.t1 MTR_5g016750 49.206 63 32 0 2 64 19 81 1.58e-17 77.0
MS.gene072897.t1 MTR_0939s0010 51.250 80 36 1 8 84 65 144 1.73e-17 77.4
MS.gene072897.t1 MTR_4g054360 39.474 152 73 7 5 151 121 258 2.38e-17 78.6
MS.gene072897.t1 MTR_1g028560 48.913 92 39 3 6 89 113 204 2.81e-17 79.3
MS.gene072897.t1 MTR_5g082950 59.649 57 23 0 7 63 65 121 2.98e-17 79.0
MS.gene072897.t1 MTR_2g105380 56.452 62 27 0 3 64 112 173 3.37e-17 79.0
MS.gene072897.t1 MTR_4g111915 49.315 73 37 0 6 78 51 123 3.44e-17 75.1
MS.gene072897.t1 MTR_1g014820 37.963 108 52 2 6 113 25 117 3.55e-17 77.8
MS.gene072897.t1 MTR_1g014780 38.182 110 56 3 6 115 36 133 3.68e-17 77.4
MS.gene072897.t1 MTR_1g014860 54.237 59 27 0 6 64 20 78 5.42e-17 76.6
MS.gene072897.t1 MTR_8g027465 57.895 57 24 0 8 64 39 95 5.47e-17 75.5
MS.gene072897.t1 MTR_4g119270 58.333 60 25 0 7 66 52 111 6.13e-17 78.2
MS.gene072897.t1 MTR_8g022820 56.452 62 27 0 3 64 119 180 6.79e-17 78.2
MS.gene072897.t1 MTR_8g022820 56.452 62 27 0 3 64 119 180 6.79e-17 78.2
MS.gene072897.t1 MTR_2g014300 57.143 63 27 0 8 70 15 77 6.88e-17 75.1
MS.gene072897.t1 MTR_8g022820 56.452 62 27 0 3 64 118 179 6.89e-17 78.2
MS.gene072897.t1 MTR_2g043050 54.386 57 26 0 8 64 19 75 7.28e-17 76.3
MS.gene072897.t1 MTR_4g112490 49.315 73 37 0 6 78 51 123 1.44e-16 75.1
MS.gene072897.t1 MTR_1g014800 52.542 59 28 0 6 64 29 87 1.81e-16 75.1
MS.gene072897.t1 MTR_2g019750 51.515 66 32 0 7 72 49 114 1.82e-16 76.3
MS.gene072897.t1 MTR_3g105510 39.362 94 46 1 6 99 35 117 2.16e-16 75.5
MS.gene072897.t1 MTR_2g043030 45.333 75 31 1 8 82 19 83 2.95e-16 74.3
MS.gene072897.t1 MTR_8g069360 59.322 59 24 0 5 63 41 99 3.05e-16 76.6
MS.gene072897.t1 MTR_5g083330 59.016 61 25 0 4 64 31 91 3.74e-16 75.5
MS.gene072897.t1 MTR_1g074310 57.627 59 24 1 7 64 20 78 5.58e-16 72.0
MS.gene072897.t1 MTR_1g070070 59.322 59 23 1 7 64 20 78 6.02e-16 72.0
MS.gene072897.t1 MTR_7g092190 56.897 58 25 0 7 64 29 86 6.10e-16 74.7
MS.gene072897.t1 MTR_8g085960 37.705 122 66 2 1 122 18 129 7.40e-16 73.9
MS.gene072897.t1 MTR_1g048610 52.055 73 28 2 6 77 87 153 9.34e-16 73.6
MS.gene072897.t1 MTR_6g029180 59.649 57 23 0 7 63 32 88 1.93e-15 73.6
MS.gene072897.t1 MTR_4g100420 52.941 68 31 1 2 68 151 218 2.19e-15 73.6
MS.gene072897.t1 MTR_1g090290 54.839 62 27 1 5 65 110 171 2.26e-15 71.6
MS.gene072897.t1 MTR_2g016730 49.398 83 35 1 7 89 22 97 2.27e-15 73.6
MS.gene072897.t1 MTR_1g101600 58.929 56 23 0 8 63 41 96 2.52e-15 71.6
MS.gene072897.t1 MTR_7g084370 48.276 87 32 2 7 93 41 114 2.63e-15 73.2
MS.gene072897.t1 MTR_5g032820 59.649 57 23 0 7 63 45 101 2.86e-15 73.6
MS.gene072897.t1 MTR_4g100450 58.065 62 25 1 8 68 154 215 2.95e-15 73.2
MS.gene072897.t1 MTR_8g006840 60.000 60 19 2 8 64 125 182 4.08e-15 71.2
MS.gene072897.t1 MTR_7g070220 57.143 63 20 1 8 63 78 140 4.31e-15 73.6
MS.gene072897.t1 MTR_2g043040 47.761 67 32 1 8 74 19 82 5.01e-15 71.6
MS.gene072897.t1 MTR_2g015040 55.738 61 26 1 6 65 61 121 6.81e-15 69.7
MS.gene072897.t1 MTR_7g096750 61.017 59 22 1 7 64 19 77 8.30e-15 68.9
MS.gene072897.t1 MTR_2g015050 55.738 61 26 1 6 65 132 192 8.48e-15 71.6
MS.gene072897.t1 MTR_4g054740 60.345 58 22 1 8 64 97 154 9.00e-15 70.9
MS.gene072897.t1 MTR_7g081795 56.667 60 25 1 6 64 58 117 9.19e-15 70.5
MS.gene072897.t1 MTR_5g008790 55.738 61 25 1 6 64 16 76 9.81e-15 69.3
MS.gene072897.t1 MTR_7g096700 61.017 59 22 1 7 64 19 77 1.22e-14 68.6
MS.gene072897.t1 MTR_8g006815 55.000 60 26 1 6 64 94 153 1.31e-14 69.7
MS.gene072897.t1 MTR_4g088005 53.226 62 28 1 4 64 53 114 1.64e-14 67.8
MS.gene072897.t1 MTR_1g074230 55.556 63 27 1 7 68 18 80 1.65e-14 68.2
MS.gene072897.t1 MTR_8g032610 46.667 75 30 1 6 70 25 99 2.05e-14 70.9
MS.gene072897.t1 MTR_7g081815 55.000 60 26 1 6 64 59 118 2.16e-14 69.3
MS.gene072897.t1 MTR_8g006825 50.000 64 31 1 2 64 90 153 3.01e-14 68.9
MS.gene072897.t1 MTR_6g465430 57.143 56 24 0 8 63 54 109 3.05e-14 69.7
MS.gene072897.t1 MTR_7g081805 55.000 60 26 1 6 64 59 118 3.18e-14 68.9
MS.gene072897.t1 MTR_3g105480 38.889 90 44 1 10 99 33 111 3.32e-14 69.3
MS.gene072897.t1 MTR_4g082345 53.448 58 27 0 6 63 46 103 4.07e-14 70.1
MS.gene072897.t1 MTR_6g465530 57.143 56 24 0 8 63 33 88 4.94e-14 68.2
MS.gene072897.t1 MTR_2g438180 55.932 59 25 1 7 64 13 71 5.06e-14 66.6
MS.gene072897.t1 MTR_2g043020 46.269 67 33 1 8 74 19 82 6.38e-14 68.2
MS.gene072897.t1 MTR_6g088425 56.338 71 31 0 8 78 49 119 6.66e-14 68.6
MS.gene072897.t1 MTR_5g085125 43.038 79 45 0 7 85 15 93 6.78e-14 67.4
MS.gene072897.t1 MTR_1g070015 50.746 67 32 1 2 67 78 144 6.99e-14 68.2
MS.gene072897.t1 MTR_1g006660 64.912 57 20 0 8 64 47 103 9.25e-14 68.6
MS.gene072897.t1 MTR_1g097190 50.000 62 30 1 3 63 18 79 1.13e-13 65.9
MS.gene072897.t1 MTR_6g465510 55.357 56 25 0 8 63 33 88 1.14e-13 67.4
MS.gene072897.t1 MTR_4g102670 43.421 76 42 1 3 78 10 84 1.46e-13 66.2
MS.gene072897.t1 MTR_1g070035 55.932 59 25 1 6 63 75 133 1.75e-13 67.0
MS.gene072897.t1 MTR_1g070020 49.254 67 33 1 2 67 64 130 1.94e-13 67.0
MS.gene072897.t1 MTR_6g465460 55.357 56 25 0 8 63 54 109 1.94e-13 67.8
MS.gene072897.t1 MTR_1g069985 52.381 63 29 1 6 67 73 135 2.15e-13 66.6
MS.gene072897.t1 MTR_6g465450 53.571 56 26 0 8 63 54 109 2.15e-13 67.4
MS.gene072897.t1 MTR_5g008590 61.404 57 22 0 8 64 11 67 2.31e-13 66.2
MS.gene072897.t1 MTR_1g070045 50.000 66 32 1 3 67 61 126 2.46e-13 65.9
MS.gene072897.t1 MTR_6g466130 53.571 56 26 0 8 63 66 121 2.49e-13 67.0
MS.gene072897.t1 MTR_6g465850 55.357 56 25 0 8 63 63 118 2.76e-13 67.4
MS.gene072897.t1 MTR_6g465420 53.571 56 26 0 8 63 54 109 3.23e-13 67.0
MS.gene072897.t1 MTR_6g465690 53.571 56 26 0 8 63 63 118 3.40e-13 67.0
MS.gene072897.t1 MTR_6g466000 53.571 56 26 0 8 63 57 112 4.85e-13 65.9
MS.gene072897.t1 MTR_1g070000 49.254 67 33 1 2 67 78 144 5.07e-13 65.9
MS.gene072897.t1 MTR_3g095190 67.797 59 19 0 6 64 168 226 5.54e-13 67.0
MS.gene072897.t1 MTR_1g074250 53.125 64 28 1 7 68 18 81 7.32e-13 63.5
MS.gene072897.t1 MTR_4g054860 52.857 70 30 2 8 74 131 200 7.37e-13 66.2
MS.gene072897.t1 MTR_7g028925 50.847 59 26 1 6 64 27 82 9.14e-13 62.4
MS.gene072897.t1 MTR_1g105400 46.667 60 30 1 3 60 110 169 3.35e-12 64.7
MS.gene072897.t1 MTR_5g008470 50.909 55 27 0 10 64 77 131 3.60e-12 62.8
MS.gene072897.t1 MTR_3g098580 64.407 59 21 0 6 64 74 132 8.52e-12 63.2
MS.gene072897.t1 MTR_3g072610 58.730 63 24 1 6 66 23 85 1.98e-11 61.6
MS.gene072897.t1 MTR_2g085015 39.785 93 47 3 8 91 47 139 2.04e-11 61.6
MS.gene072897.t1 MTR_5g010930 48.387 62 26 1 8 63 49 110 3.16e-11 60.8
MS.gene072897.t1 MTR_7g096810 45.631 103 47 4 7 100 12 114 3.18e-11 58.9
MS.gene072897.t1 MTR_7g061190 43.284 67 38 0 5 71 71 137 4.03e-11 59.3
MS.gene072897.t1 MTR_6g466020 48.214 56 29 0 8 63 43 98 4.25e-11 59.7
MS.gene072897.t1 MTR_5g058470 62.295 61 22 1 6 65 94 154 4.64e-11 61.2
MS.gene072897.t1 MTR_3g112440 50.000 74 33 1 8 77 39 112 5.98e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072897.t1 AT5G25390 60.500 200 58 3 4 203 3 181 2.90e-77 230
MS.gene072897.t1 AT5G25390 59.000 200 58 4 4 203 3 178 7.96e-73 219
MS.gene072897.t1 AT1G15360 59.596 198 79 1 4 201 3 199 6.49e-71 214
MS.gene072897.t1 AT1G15360 59.596 198 79 1 4 201 3 199 6.49e-71 214
MS.gene072897.t1 AT5G11190 58.291 199 70 3 4 201 3 189 9.78e-69 208
MS.gene072897.t1 AT5G25190 39.500 200 88 5 1 200 1 167 4.12e-30 110
MS.gene072897.t1 AT2G35700 62.500 64 24 0 1 64 38 101 3.05e-21 87.4
MS.gene072897.t1 AT5G53290 64.516 62 22 0 4 65 121 182 4.71e-21 89.7
MS.gene072897.t1 AT4G13620 63.077 65 24 0 5 69 229 293 6.72e-21 89.7
MS.gene072897.t1 AT1G36060 56.944 72 31 0 6 77 141 212 1.15e-20 88.2
MS.gene072897.t1 AT4G16750 61.905 63 24 0 2 64 34 96 1.33e-20 85.1
MS.gene072897.t1 AT1G03800 54.054 74 32 1 7 80 52 123 1.33e-20 86.7
MS.gene072897.t1 AT1G78080 42.991 107 48 1 3 109 147 240 2.86e-20 87.4
MS.gene072897.t1 AT2G22200 66.667 57 19 0 8 64 71 127 3.50e-20 85.9
MS.gene072897.t1 AT2G23340 47.059 85 39 1 3 87 23 101 4.54e-20 84.0
MS.gene072897.t1 AT4G27950 61.905 63 24 0 3 65 113 175 5.52e-20 86.7
MS.gene072897.t1 AT5G65130 60.606 66 26 0 5 70 108 173 5.86e-20 85.5
MS.gene072897.t1 AT5G65130 60.606 66 26 0 5 70 110 175 5.91e-20 85.9
MS.gene072897.t1 AT2G47520 57.746 71 28 1 8 78 50 118 5.98e-20 83.2
MS.gene072897.t1 AT4G28140 63.333 60 22 0 5 64 140 199 6.08e-20 85.9
MS.gene072897.t1 AT3G16280 51.948 77 37 0 4 80 57 133 1.22e-19 84.0
MS.gene072897.t1 AT4G23750 58.209 67 28 0 6 72 120 186 1.28e-19 85.9
MS.gene072897.t1 AT4G23750 58.209 67 28 0 6 72 120 186 1.28e-19 85.9
MS.gene072897.t1 AT1G28370 62.069 58 22 0 7 64 19 76 1.50e-19 82.0
MS.gene072897.t1 AT1G71450 52.564 78 30 1 8 85 24 94 1.71e-19 82.4
MS.gene072897.t1 AT5G61890 62.712 59 22 0 6 64 88 146 1.80e-19 84.0
MS.gene072897.t1 AT3G16280 51.948 77 37 0 4 80 75 151 1.83e-19 84.0
MS.gene072897.t1 AT4G11140 62.712 59 22 0 6 64 85 143 2.45e-19 84.3
MS.gene072897.t1 AT4G06746 50.704 71 29 1 6 76 34 98 2.83e-19 80.9
MS.gene072897.t1 AT1G22190 54.286 70 32 0 2 71 77 146 2.84e-19 83.6
MS.gene072897.t1 AT4G39780 52.564 78 31 1 6 83 91 162 3.19e-19 83.6
MS.gene072897.t1 AT5G13330 62.712 59 22 0 6 64 37 95 3.99e-19 82.0
MS.gene072897.t1 AT1G21910 61.017 59 23 0 8 66 50 108 4.17e-19 82.4
MS.gene072897.t1 AT1G28370 62.069 58 22 0 7 64 57 114 4.92e-19 81.6
MS.gene072897.t1 AT5G44210 65.517 58 20 0 8 65 33 90 5.09e-19 81.6
MS.gene072897.t1 AT3G11020 64.407 59 21 0 8 66 78 136 5.55e-19 84.0
MS.gene072897.t1 AT2G20880 60.000 60 24 0 5 64 184 243 5.70e-19 84.0
MS.gene072897.t1 AT4G36900 51.613 62 30 0 3 64 25 86 9.26e-19 80.9
MS.gene072897.t1 AT1G50640 62.712 59 22 0 7 65 27 85 1.00e-18 81.3
MS.gene072897.t1 AT4G32800 63.158 57 21 0 8 64 19 75 1.25e-18 80.9
MS.gene072897.t1 AT2G33710 61.017 59 23 0 6 64 68 126 1.38e-18 80.9
MS.gene072897.t1 AT2G33710 61.017 59 23 0 6 64 68 126 1.52e-18 80.9
MS.gene072897.t1 AT3G20310 61.017 59 23 0 7 65 26 84 1.71e-18 81.3
MS.gene072897.t1 AT3G15210 62.712 59 22 0 7 65 24 82 1.88e-18 80.5
MS.gene072897.t1 AT5G43410 58.824 68 27 1 7 73 14 81 2.18e-18 78.2
MS.gene072897.t1 AT2G25820 63.158 57 21 0 8 64 26 82 2.80e-18 80.1
MS.gene072897.t1 AT3G50260 49.206 63 32 0 2 64 15 77 4.53e-18 77.8
MS.gene072897.t1 AT2G44940 61.404 57 22 0 8 64 100 156 5.09e-18 80.9
MS.gene072897.t1 AT5G47220 57.971 69 28 1 4 71 113 181 5.79e-18 79.7
MS.gene072897.t1 AT4G17500 59.701 67 26 1 6 71 146 212 6.43e-18 80.1
MS.gene072897.t1 AT5G11590 61.404 57 22 0 8 64 51 107 7.18e-18 79.3
MS.gene072897.t1 AT2G46310 50.617 81 35 2 1 78 92 170 7.77e-18 80.1
MS.gene072897.t1 AT5G25810 61.404 57 22 0 8 64 36 92 8.05e-18 79.0
MS.gene072897.t1 AT1G46768 52.381 63 30 0 2 64 25 87 8.18e-18 77.0
MS.gene072897.t1 AT1G72360 54.839 62 28 0 3 64 20 81 8.54e-18 78.6
MS.gene072897.t1 AT3G60490 61.404 57 22 0 8 64 71 127 9.22e-18 79.3
MS.gene072897.t1 AT1G46768 52.381 63 30 0 2 64 25 87 9.28e-18 77.0
MS.gene072897.t1 AT1G46768 52.381 63 30 0 2 64 25 87 9.28e-18 77.0
MS.gene072897.t1 AT1G28160 46.939 98 35 3 7 100 38 122 1.10e-17 79.0
MS.gene072897.t1 AT1G22985 63.934 61 19 1 6 63 73 133 1.15e-17 77.0
MS.gene072897.t1 AT1G72360 54.839 62 28 0 3 64 71 132 1.26e-17 79.0
MS.gene072897.t1 AT1G72360 54.839 62 28 0 3 64 69 130 1.29e-17 79.0
MS.gene072897.t1 AT1G19210 55.172 58 26 0 7 64 11 68 1.50e-17 77.4
MS.gene072897.t1 AT5G67190 48.387 62 32 0 3 64 16 77 1.63e-17 77.4
MS.gene072897.t1 AT3G61630 62.069 58 22 0 6 63 103 160 1.84e-17 79.3
MS.gene072897.t1 AT4G31060 50.769 65 32 0 3 67 22 86 1.93e-17 77.0
MS.gene072897.t1 AT5G05410 62.712 59 22 0 8 66 79 137 2.02e-17 79.3
MS.gene072897.t1 AT1G01250 56.140 57 25 0 8 64 45 101 2.25e-17 77.0
MS.gene072897.t1 AT5G05410 62.712 59 22 0 8 66 79 137 2.50e-17 79.3
MS.gene072897.t1 AT5G19790 63.158 57 21 0 7 63 21 77 3.90e-17 77.8
MS.gene072897.t1 AT2G40340 31.250 208 104 5 8 201 14 196 5.01e-17 77.8
MS.gene072897.t1 AT2G40340 31.250 208 104 5 8 201 14 196 5.01e-17 77.8
MS.gene072897.t1 AT2G40340 31.250 208 104 5 8 201 14 196 5.01e-17 77.8
MS.gene072897.t1 AT4G25490 62.500 56 21 0 8 63 48 103 5.84e-17 76.3
MS.gene072897.t1 AT1G28360 61.404 57 22 0 8 64 12 68 6.66e-17 75.9
MS.gene072897.t1 AT1G74930 53.448 58 27 0 7 64 20 77 7.41e-17 75.9
MS.gene072897.t1 AT2G40340 31.250 208 104 5 8 201 79 261 7.97e-17 77.8
MS.gene072897.t1 AT3G57600 56.897 58 25 0 7 64 27 84 9.77e-17 77.0
MS.gene072897.t1 AT2G40340 31.250 208 104 5 8 201 72 254 1.06e-16 77.4
MS.gene072897.t1 AT5G21960 49.206 63 32 0 2 64 1 63 1.13e-16 75.9
MS.gene072897.t1 AT1G24590 50.000 80 36 1 5 80 55 134 1.18e-16 77.0
MS.gene072897.t1 AT4G25470 62.500 56 21 0 8 63 51 106 1.18e-16 75.5
MS.gene072897.t1 AT2G40340 48.649 74 38 0 8 81 72 145 1.74e-16 76.6
MS.gene072897.t1 AT5G13910 59.649 57 23 0 7 63 19 75 2.42e-16 74.7
MS.gene072897.t1 AT1G12980 57.627 59 25 0 5 63 54 112 2.49e-16 76.3
MS.gene072897.t1 AT3G16770 59.649 57 23 0 8 64 79 135 3.57e-16 75.1
MS.gene072897.t1 AT1G12890 52.174 69 33 0 4 72 17 85 3.94e-16 74.3
MS.gene072897.t1 AT3G23230 59.322 59 23 1 7 64 19 77 4.83e-16 72.4
MS.gene072897.t1 AT5G18560 57.895 57 24 0 7 63 54 110 5.67e-16 75.5
MS.gene072897.t1 AT4G25480 58.929 56 23 0 8 63 51 106 9.96e-16 73.2
MS.gene072897.t1 AT5G47230 54.688 64 28 1 3 65 151 214 1.63e-15 73.9
MS.gene072897.t1 AT5G51990 58.929 56 23 0 8 63 54 109 2.37e-15 72.4
MS.gene072897.t1 AT5G51190 49.275 69 34 1 6 73 70 138 3.66e-15 71.6
MS.gene072897.t1 AT2G44840 53.968 63 28 1 3 64 87 149 5.10e-15 71.2
MS.gene072897.t1 AT5G18450 57.627 59 25 0 5 63 31 89 6.38e-15 72.4
MS.gene072897.t1 AT4G17490 46.667 75 39 1 3 76 132 206 6.39e-15 72.0
MS.gene072897.t1 AT1G63030 53.571 56 26 0 8 63 30 85 9.80e-15 69.7
MS.gene072897.t1 AT1G63030 53.571 56 26 0 8 63 30 85 9.80e-15 69.7
MS.gene072897.t1 AT1G71130 57.143 63 22 1 6 63 77 139 1.07e-14 69.3
MS.gene072897.t1 AT5G07580 45.570 79 37 2 5 82 107 180 1.25e-14 70.1
MS.gene072897.t1 AT3G23240 50.000 80 37 2 6 84 80 157 1.25e-14 70.1
MS.gene072897.t1 AT1G75490 50.000 68 34 0 8 75 42 109 1.47e-14 69.7
MS.gene072897.t1 AT5G61600 47.887 71 36 1 6 75 86 156 1.67e-14 70.1
MS.gene072897.t1 AT2G36450 56.667 60 25 1 8 66 15 74 2.23e-14 68.9
MS.gene072897.t1 AT2G40350 51.724 58 28 0 8 65 74 131 2.24e-14 68.6
MS.gene072897.t1 AT2G40350 51.724 58 28 0 8 65 67 124 2.31e-14 68.2
MS.gene072897.t1 AT5G64750 60.000 50 20 0 15 64 192 241 4.38e-14 70.5
MS.gene072897.t1 AT4G18450 56.452 62 25 2 4 63 106 167 6.37e-14 69.3
MS.gene072897.t1 AT2G38340 47.619 84 36 1 7 82 69 152 9.58e-14 68.2
MS.gene072897.t1 AT2G31230 50.769 65 31 1 2 65 80 144 1.03e-13 68.2
MS.gene072897.t1 AT1G12610 50.000 56 28 0 8 63 30 85 1.15e-13 67.4
MS.gene072897.t1 AT5G07310 64.407 59 21 0 6 64 90 148 1.35e-13 68.2
MS.gene072897.t1 AT1G43160 65.079 63 22 0 2 64 55 117 1.61e-13 66.6
MS.gene072897.t1 AT1G71520 48.387 62 28 1 7 64 13 74 1.71e-13 65.5
MS.gene072897.t1 AT1G77200 51.948 77 37 0 2 78 37 113 1.98e-13 67.4
MS.gene072897.t1 AT1G22810 48.333 60 29 1 7 64 13 72 3.87e-13 64.7
MS.gene072897.t1 AT1G68550 42.857 77 40 1 6 78 111 187 3.97e-13 67.4
MS.gene072897.t1 AT1G68550 42.857 77 40 1 6 78 111 187 3.97e-13 67.4
MS.gene072897.t1 AT3G25890 68.421 38 12 0 10 47 133 170 1.91e-12 65.5
MS.gene072897.t1 AT3G25890 68.421 38 12 0 10 47 133 170 1.91e-12 65.5
MS.gene072897.t1 AT4G34410 65.517 58 20 0 8 65 136 193 3.08e-12 64.3
MS.gene072897.t1 AT5G50080 61.290 62 24 0 3 64 72 133 4.65e-12 63.2
MS.gene072897.t1 AT1G77640 42.708 96 46 2 4 99 39 125 4.70e-12 63.5
MS.gene072897.t1 AT5G50080 61.290 62 24 0 3 64 81 142 4.70e-12 63.5
MS.gene072897.t1 AT5G67180 44.872 78 42 1 5 81 186 263 1.20e-11 62.8
MS.gene072897.t1 AT5G67180 44.872 78 42 1 5 81 186 263 2.77e-11 62.0
MS.gene072897.t1 AT1G53170 61.404 57 22 0 7 63 30 86 3.09e-11 60.5
MS.gene072897.t1 AT1G44830 61.290 62 23 1 4 64 31 92 4.60e-11 60.5
MS.gene072897.t1 AT5G67000 47.541 61 32 0 2 62 115 175 6.36e-11 59.7
MS.gene072897.t1 AT1G64380 44.037 109 49 2 1 109 129 225 6.84e-11 60.8
MS.gene072897.t1 AT1G33760 57.895 57 24 0 8 64 20 76 8.96e-11 58.9

Find 52 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCACATTCTGATTCTAAT+TGG 0.168182 3.2:-87194758 MS.gene072897:CDS
CTACCACTACCACCATTATA+AGG 0.252274 3.2:+87194930 None:intergenic
ACTATTGATGGTGGTAATAA+TGG 0.301168 3.2:-87194666 MS.gene072897:CDS
CTCCATCACTTACTTGTTTG+AGG 0.311570 3.2:-87194827 MS.gene072897:CDS
TGATTGAAGAGTTACTTAAT+TGG 0.312912 3.2:-87194584 MS.gene072897:CDS
GGCAGCGCCAGTGGGGCTCT+TGG 0.319895 3.2:-87195255 MS.gene072897:CDS
GCAGCGCCAGTGGGGCTCTT+GGG 0.372367 3.2:-87195254 MS.gene072897:CDS
TACCACTACCACCATTATAA+GGG 0.385987 3.2:+87194931 None:intergenic
GTAATGCTGATAATGAAAAT+AGG 0.388971 3.2:-87194644 MS.gene072897:CDS
GCTAGTGACACCCCTTATAA+TGG 0.412119 3.2:-87194942 MS.gene072897:CDS
AGTAGCTCAGAGAGTGCCTT+GGG 0.425168 3.2:+87194885 None:intergenic
ACTATAGAGTCAGAAGAGAT+AGG 0.438321 3.2:-87194702 MS.gene072897:CDS
ACCACATTCTGATTCTAATT+GGG 0.444505 3.2:-87194757 MS.gene072897:CDS
TCAAAACAACACACTATTGA+TGG 0.448013 3.2:-87194678 MS.gene072897:CDS
GAGGAGTCAGGCAGCGCCAG+TGG 0.460267 3.2:-87195264 MS.gene072897:CDS
TGATTCTTTCTTGTCTCCCA+AGG 0.481277 3.2:-87194901 MS.gene072897:CDS
TCACCTTGATTCTTTGACAC+AGG 0.481740 3.2:+87194972 None:intergenic
TTTCCTGTGTCAAAGAATCA+AGG 0.490960 3.2:-87194975 MS.gene072897:CDS
CAAAGAAGTTCAGAGGAGTC+AGG 0.498039 3.2:-87195276 MS.gene072897:CDS
AGAAAGAGAAGGGTGTGGTT+AGG 0.501728 3.2:-87195080 MS.gene072897:CDS
AGGAGTCAGGCAGCGCCAGT+GGG 0.506725 3.2:-87195263 MS.gene072897:CDS
CTGATTCTAATTGGGTCATG+AGG 0.507349 3.2:-87194749 MS.gene072897:CDS
CTGACACCCAAGAGCCCCAC+TGG 0.511591 3.2:+87195248 None:intergenic
TAGGTTGGTAGTAGAAGAAG+AGG 0.515176 3.2:-87194625 MS.gene072897:CDS
ACCCCTTATAATGGTGGTAG+TGG 0.519879 3.2:-87194933 MS.gene072897:CDS
ATTAATGTTGCAGAAAGAGA+AGG 0.522866 3.2:-87195091 MS.gene072897:intron
TGCTGATAATGAAAATAGGT+TGG 0.525975 3.2:-87194640 MS.gene072897:CDS
AATGAGGGAATTACAACAAA+GGG 0.528956 3.2:+87195215 None:intergenic
TTAATGTTGCAGAAAGAGAA+GGG 0.538276 3.2:-87195090 MS.gene072897:intron
TGGGTCATGAGGGTTGAACT+TGG 0.546099 3.2:-87194738 MS.gene072897:CDS
GAGTAGCTCAGAGAGTGCCT+TGG 0.546798 3.2:+87194884 None:intergenic
TATAATGGTGGTAGTGGTAG+TGG 0.550731 3.2:-87194927 MS.gene072897:CDS
GTCATGAGGGTTGAACTTGG+TGG 0.552880 3.2:-87194735 MS.gene072897:CDS
TGATTCTAATTGGGTCATGA+GGG 0.557657 3.2:-87194748 MS.gene072897:CDS
AGCCTCAAACAAGTAAGTGA+TGG 0.562083 3.2:+87194825 None:intergenic
GATAATGATAATTCTCACAT+TGG 0.568198 3.2:-87194801 MS.gene072897:CDS
AACAAGTAAGTGATGGAGAA+GGG 0.581544 3.2:+87194832 None:intergenic
TCATGAGGGTTGAACTTGGT+GGG 0.586410 3.2:-87194734 MS.gene072897:CDS
AAACAAGTAAGTGATGGAGA+AGG 0.587309 3.2:+87194831 None:intergenic
GTTGCAGAAAGAGAAGGGTG+TGG 0.608205 3.2:-87195085 MS.gene072897:intron
CAACAAACAAAGAAGTTCAG+AGG 0.612284 3.2:-87195283 MS.gene072897:CDS
TTACTTGAAGTTGATCCACA+TGG 0.613395 3.2:+87194555 None:intergenic
AGGAACATTTGAGACAGCAG+AGG 0.634183 3.2:-87195060 MS.gene072897:CDS
ACCACTACCACCATTATAAG+GGG 0.634975 3.2:+87194932 None:intergenic
AAATGAGGGAATTACAACAA+AGG 0.637685 3.2:+87195214 None:intergenic
AAACAACACACTATTGATGG+TGG 0.638087 3.2:-87194675 MS.gene072897:CDS
GGAGTCAGGCAGCGCCAGTG+GGG 0.645187 3.2:-87195262 MS.gene072897:CDS
ATAATTCTCACATTGGAGTG+TGG 0.651598 3.2:-87194794 MS.gene072897:CDS
GAGGGAATTACAACAAAGGG+TGG 0.653367 3.2:+87195218 None:intergenic
CTTAATTGGAACTATCCATG+TGG 0.667569 3.2:-87194570 MS.gene072897:CDS
AGTGACACCCCTTATAATGG+TGG 0.678747 3.2:-87194939 MS.gene072897:CDS
ACCCAATTAGAATCAGAATG+TGG 0.683688 3.2:+87194756 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAATATAATATAAGATGT+AGG + chr3.2:87194683-87194702 None:intergenic 15.0%
!! ATTGATATAGAGTTAAATGA+GGG + chr3.2:87194643-87194662 None:intergenic 20.0%
! CATTGATATAGAGTTAAATG+AGG + chr3.2:87194644-87194663 None:intergenic 25.0%
! GATAATGATAATTCTCACAT+TGG - chr3.2:87195039-87195058 MS.gene072897:CDS 25.0%
! TGATTGAAGAGTTACTTAAT+TGG - chr3.2:87195256-87195275 MS.gene072897:CDS 25.0%
!! GTAATGCTGATAATGAAAAT+AGG - chr3.2:87195196-87195215 MS.gene072897:intron 25.0%
AAATGAGGGAATTACAACAA+AGG + chr3.2:87194629-87194648 None:intergenic 30.0%
AATGAGGGAATTACAACAAA+GGG + chr3.2:87194628-87194647 None:intergenic 30.0%
ACCACATTCTGATTCTAATT+GGG - chr3.2:87195083-87195102 MS.gene072897:intron 30.0%
ATTAATGTTGCAGAAAGAGA+AGG - chr3.2:87194749-87194768 MS.gene072897:CDS 30.0%
TCAAAACAACACACTATTGA+TGG - chr3.2:87195162-87195181 MS.gene072897:intron 30.0%
TTAATGTTGCAGAAAGAGAA+GGG - chr3.2:87194750-87194769 MS.gene072897:CDS 30.0%
! TGCTGATAATGAAAATAGGT+TGG - chr3.2:87195200-87195219 MS.gene072897:intron 30.0%
!! ACTATTGATGGTGGTAATAA+TGG - chr3.2:87195174-87195193 MS.gene072897:intron 30.0%
AAACAACACACTATTGATGG+TGG - chr3.2:87195165-87195184 MS.gene072897:intron 35.0%
ACCCAATTAGAATCAGAATG+TGG + chr3.2:87195087-87195106 None:intergenic 35.0%
ACTATAGAGTCAGAAGAGAT+AGG - chr3.2:87195138-87195157 MS.gene072897:intron 35.0%
ATAATTCTCACATTGGAGTG+TGG - chr3.2:87195046-87195065 MS.gene072897:CDS 35.0%
CAACAAACAAAGAAGTTCAG+AGG - chr3.2:87194557-87194576 MS.gene072897:CDS 35.0%
CTTAATTGGAACTATCCATG+TGG - chr3.2:87195270-87195289 MS.gene072897:CDS 35.0%
GACCACATTCTGATTCTAAT+TGG - chr3.2:87195082-87195101 MS.gene072897:intron 35.0%
TACCACTACCACCATTATAA+GGG + chr3.2:87194912-87194931 None:intergenic 35.0%
TGATTCTAATTGGGTCATGA+GGG - chr3.2:87195092-87195111 MS.gene072897:intron 35.0%
TTTCCTGTGTCAAAGAATCA+AGG - chr3.2:87194865-87194884 MS.gene072897:CDS 35.0%
! AAACAAGTAAGTGATGGAGA+AGG + chr3.2:87195012-87195031 None:intergenic 35.0%
! AACAAGTAAGTGATGGAGAA+GGG + chr3.2:87195011-87195030 None:intergenic 35.0%
! TTACTTGAAGTTGATCCACA+TGG + chr3.2:87195288-87195307 None:intergenic 35.0%
!! CAAGCTGCAATTTTGATGAA+TGG - chr3.2:87194823-87194842 MS.gene072897:CDS 35.0%
ACCACTACCACCATTATAAG+GGG + chr3.2:87194911-87194930 None:intergenic 40.0%
AGCCTCAAACAAGTAAGTGA+TGG + chr3.2:87195018-87195037 None:intergenic 40.0%
CTACCACTACCACCATTATA+AGG + chr3.2:87194913-87194932 None:intergenic 40.0%
CTCCATCACTTACTTGTTTG+AGG - chr3.2:87195013-87195032 MS.gene072897:CDS 40.0%
CTGATTCTAATTGGGTCATG+AGG - chr3.2:87195091-87195110 MS.gene072897:intron 40.0%
TAAGATGTAGGTGCATTGTG+TGG + chr3.2:87194671-87194690 None:intergenic 40.0%
TCACCTTGATTCTTTGACAC+AGG + chr3.2:87194871-87194890 None:intergenic 40.0%
TGATTCTTTCTTGTCTCCCA+AGG - chr3.2:87194939-87194958 MS.gene072897:CDS 40.0%
!! TAGGTTGGTAGTAGAAGAAG+AGG - chr3.2:87195215-87195234 MS.gene072897:intron 40.0%
!! TATAATGGTGGTAGTGGTAG+TGG - chr3.2:87194913-87194932 MS.gene072897:CDS 40.0%
ACCCCTTATAATGGTGGTAG+TGG - chr3.2:87194907-87194926 MS.gene072897:CDS 45.0%
AGTGACACCCCTTATAATGG+TGG - chr3.2:87194901-87194920 MS.gene072897:CDS 45.0%
CAAAGAAGTTCAGAGGAGTC+AGG - chr3.2:87194564-87194583 MS.gene072897:CDS 45.0%
GAGGGAATTACAACAAAGGG+TGG + chr3.2:87194625-87194644 None:intergenic 45.0%
GCTAGTGACACCCCTTATAA+TGG - chr3.2:87194898-87194917 MS.gene072897:CDS 45.0%
TCATGAGGGTTGAACTTGGT+GGG - chr3.2:87195106-87195125 MS.gene072897:intron 45.0%
! AGAAAGAGAAGGGTGTGGTT+AGG - chr3.2:87194760-87194779 MS.gene072897:CDS 45.0%
! AGGAACATTTGAGACAGCAG+AGG - chr3.2:87194780-87194799 MS.gene072897:CDS 45.0%
GGAGTGTGGCAAAAAAGAGC+TGG - chr3.2:87195060-87195079 MS.gene072897:CDS 50.0%
GTCATGAGGGTTGAACTTGG+TGG - chr3.2:87195105-87195124 MS.gene072897:intron 50.0%
GTTGCAGAAAGAGAAGGGTG+TGG - chr3.2:87194755-87194774 MS.gene072897:CDS 50.0%
TGGGTCATGAGGGTTGAACT+TGG - chr3.2:87195102-87195121 MS.gene072897:intron 50.0%
!! AGTAGCTCAGAGAGTGCCTT+GGG + chr3.2:87194958-87194977 None:intergenic 50.0%
!! GAGTAGCTCAGAGAGTGCCT+TGG + chr3.2:87194959-87194978 None:intergenic 55.0%
AGGAGTCAGGCAGCGCCAGT+GGG - chr3.2:87194577-87194596 MS.gene072897:CDS 65.0%
CTGACACCCAAGAGCCCCAC+TGG + chr3.2:87194595-87194614 None:intergenic 65.0%
GAGGAGTCAGGCAGCGCCAG+TGG - chr3.2:87194576-87194595 MS.gene072897:CDS 70.0%
GCAGCGCCAGTGGGGCTCTT+GGG - chr3.2:87194586-87194605 MS.gene072897:CDS 70.0%
GGAGTCAGGCAGCGCCAGTG+GGG - chr3.2:87194578-87194597 MS.gene072897:CDS 70.0%
GGCAGCGCCAGTGGGGCTCT+TGG - chr3.2:87194585-87194604 MS.gene072897:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 87194551 87195311 87194551 ID=MS.gene072897
chr3.2 mRNA 87194551 87195311 87194551 ID=MS.gene072897.t1;Parent=MS.gene072897
chr3.2 exon 87195229 87195311 87195229 ID=MS.gene072897.t1.exon1;Parent=MS.gene072897.t1
chr3.2 CDS 87195229 87195311 87195229 ID=cds.MS.gene072897.t1;Parent=MS.gene072897.t1
chr3.2 exon 87194551 87195100 87194551 ID=MS.gene072897.t1.exon2;Parent=MS.gene072897.t1
chr3.2 CDS 87194551 87195100 87194551 ID=cds.MS.gene072897.t1;Parent=MS.gene072897.t1
Gene Sequence

>MS.gene072897

ATGGTACAACAAACAAAGAAGTTCAGAGGAGTCAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCTTTGTTGTAATTCCCTCATTTAACTCTATATCAATGAAATCCACACAATGCACCTACATCTTATATTATATTATGTACATGTTATTTATTTATATATAGTTGCTTTTTTTGTGTTTGATAAATTAATGTTGCAGAAAGAGAAGGGTGTGGTTAGGAACATTTGAGACAGCAGAGGCAGCAGCAAGAGCATATGATCAAGCTGCAATTTTGATGAATGGTCAAAGTGCAAAGACTAATTTTCCTGTGTCAAAGAATCAAGGTGAAGAAGTTGCTAGTGACACCCCTTATAATGGTGGTAGTGGTAGTGGTGATGATTCTTTCTTGTCTCCCAAGGCACTCTCTGAGCTACTCAGCACAAAGCTTAGAAAGTATTGCAAAGACCCTTCTCCATCACTTACTTGTTTGAGGCTAGATAATGATAATTCTCACATTGGAGTGTGGCAAAAAAGAGCTGGACCACATTCTGATTCTAATTGGGTCATGAGGGTTGAACTTGGTGGGAAGAAAAAGACTATAGAGTCAGAAGAGATAGGATCAAAACAACACACTATTGATGGTGGTAATAATGGTAATGCTGATAATGAAAATAGGTTGGTAGTAGAAGAAGAGGAGAGAGTTGCTTTGCAGATGATTGAAGAGTTACTTAATTGGAACTATCCATGTGGATCAACTTCAAGTAATTAA

Protein sequence

>MS.gene072897.t1

MVQQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQSAKTNFPVSKNQGEEVASDTPYNGGSGSGDDSFLSPKALSELLSTKLRKYCKDPSPSLTCLRLDNDNSHIGVWQKRAGPHSDSNWVMRVELGGKKKTIESEEIGSKQHTIDGGNNGNADNENRLVVEEEERVALQMIEELLNWNYPCGSTSSN