Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40595.t1 | XP_013461938.1 | 100 | 158 | 0 | 0 | 1 | 158 | 375 | 532 | 3.30E-79 | 304.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40595.t1 | Q9LV21 | 93.0 | 158 | 11 | 0 | 1 | 158 | 379 | 536 | 1.2e-77 | 290.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40595.t1 | A0A2K3MWZ1 | 100.0 | 158 | 0 | 0 | 1 | 158 | 376 | 533 | 2.4e-79 | 304.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene40595 | 0.806308 | 8.76E-50 | -1.69E-46 |
MS.gene049159 | MS.gene40595 | 0.821707 | 3.50E-53 | -1.69E-46 |
MS.gene049255 | MS.gene40595 | 0.895847 | 6.50E-76 | -1.69E-46 |
MS.gene049340 | MS.gene40595 | 0.811844 | 5.71E-51 | -1.69E-46 |
MS.gene049341 | MS.gene40595 | 0.861282 | 1.14E-63 | -1.69E-46 |
MS.gene049821 | MS.gene40595 | 0.863881 | 1.81E-64 | -1.69E-46 |
MS.gene049825 | MS.gene40595 | 0.811339 | 7.36E-51 | -1.69E-46 |
MS.gene049850 | MS.gene40595 | 0.813429 | 2.57E-51 | -1.69E-46 |
MS.gene049873 | MS.gene40595 | 0.820928 | 5.29E-53 | -1.69E-46 |
MS.gene049887 | MS.gene40595 | 0.801557 | 8.51E-49 | -1.69E-46 |
MS.gene050020 | MS.gene40595 | 0.830367 | 3.06E-55 | -1.69E-46 |
MS.gene050277 | MS.gene40595 | 0.845895 | 3.05E-59 | -1.69E-46 |
MS.gene050303 | MS.gene40595 | 0.821792 | 3.34E-53 | -1.69E-46 |
MS.gene050437 | MS.gene40595 | 0.815914 | 7.24E-52 | -1.69E-46 |
MS.gene050689 | MS.gene40595 | 0.850837 | 1.31E-60 | -1.69E-46 |
MS.gene050752 | MS.gene40595 | 0.810326 | 1.22E-50 | -1.69E-46 |
MS.gene050807 | MS.gene40595 | 0.824777 | 6.72E-54 | -1.69E-46 |
MS.gene050815 | MS.gene40595 | 0.845601 | 3.67E-59 | -1.69E-46 |
MS.gene050838 | MS.gene40595 | 0.843733 | 1.17E-58 | -1.69E-46 |
MS.gene050901 | MS.gene40595 | 0.809475 | 1.86E-50 | -1.69E-46 |
MS.gene050955 | MS.gene40595 | 0.80008 | 1.70E-48 | -1.69E-46 |
MS.gene051003 | MS.gene40595 | 0.836742 | 7.83E-57 | -1.69E-46 |
MS.gene051234 | MS.gene40595 | 0.826655 | 2.41E-54 | -1.69E-46 |
MS.gene051241 | MS.gene40595 | 0.820035 | 8.49E-53 | -1.69E-46 |
MS.gene051243 | MS.gene40595 | 0.832186 | 1.09E-55 | -1.69E-46 |
MS.gene051247 | MS.gene40595 | 0.807879 | 4.07E-50 | -1.69E-46 |
MS.gene051328 | MS.gene40595 | 0.910659 | 1.46E-82 | -1.69E-46 |
MS.gene05134 | MS.gene40595 | 0.864821 | 9.23E-65 | -1.69E-46 |
MS.gene05157 | MS.gene40595 | 0.821522 | 3.86E-53 | -1.69E-46 |
MS.gene051700 | MS.gene40595 | 0.832554 | 8.85E-56 | -1.69E-46 |
MS.gene051719 | MS.gene40595 | 0.834713 | 2.56E-56 | -1.69E-46 |
MS.gene051720 | MS.gene40595 | 0.831102 | 2.02E-55 | -1.69E-46 |
MS.gene051746 | MS.gene40595 | 0.805496 | 1.30E-49 | -1.69E-46 |
MS.gene051791 | MS.gene40595 | 0.829117 | 6.16E-55 | -1.69E-46 |
MS.gene051850 | MS.gene40595 | 0.801031 | 1.09E-48 | -1.69E-46 |
MS.gene05188 | MS.gene40595 | 0.845209 | 4.69E-59 | -1.69E-46 |
MS.gene051975 | MS.gene40595 | 0.807199 | 5.68E-50 | -1.69E-46 |
MS.gene052133 | MS.gene40595 | 0.862718 | 4.16E-64 | -1.69E-46 |
MS.gene052335 | MS.gene40595 | 0.811243 | 7.72E-51 | -1.69E-46 |
MS.gene052397 | MS.gene40595 | 0.802689 | 4.98E-49 | -1.69E-46 |
MS.gene052516 | MS.gene40595 | 0.846004 | 2.85E-59 | -1.69E-46 |
MS.gene052519 | MS.gene40595 | 0.822669 | 2.09E-53 | -1.69E-46 |
MS.gene052584 | MS.gene40595 | 0.810807 | 9.59E-51 | -1.69E-46 |
MS.gene052665 | MS.gene40595 | 0.812832 | 3.48E-51 | -1.69E-46 |
MS.gene052863 | MS.gene40595 | 0.813113 | 3.02E-51 | -1.69E-46 |
MS.gene052879 | MS.gene40595 | 0.841123 | 5.75E-58 | -1.69E-46 |
MS.gene052880 | MS.gene40595 | 0.829485 | 5.01E-55 | -1.69E-46 |
MS.gene052947 | MS.gene40595 | 0.874713 | 5.45E-68 | -1.69E-46 |
MS.gene053008 | MS.gene40595 | 0.834048 | 3.75E-56 | -1.69E-46 |
MS.gene053058 | MS.gene40595 | 0.823203 | 1.57E-53 | -1.69E-46 |
MS.gene053122 | MS.gene40595 | 0.848602 | 5.52E-60 | -1.69E-46 |
MS.gene053226 | MS.gene40595 | 0.8387 | 2.46E-57 | -1.69E-46 |
MS.gene053581 | MS.gene40595 | 0.843388 | 1.44E-58 | -1.69E-46 |
MS.gene053599 | MS.gene40595 | 0.809647 | 1.71E-50 | -1.69E-46 |
MS.gene05364 | MS.gene40595 | 0.815407 | 9.39E-52 | -1.69E-46 |
MS.gene054403 | MS.gene40595 | 0.810603 | 1.06E-50 | -1.69E-46 |
MS.gene054651 | MS.gene40595 | 0.805356 | 1.39E-49 | -1.69E-46 |
MS.gene055162 | MS.gene40595 | 0.843127 | 1.70E-58 | -1.69E-46 |
MS.gene05517 | MS.gene40595 | 0.819339 | 1.22E-52 | -1.69E-46 |
MS.gene055465 | MS.gene40595 | 0.832927 | 7.15E-56 | -1.69E-46 |
MS.gene055466 | MS.gene40595 | 0.866012 | 3.89E-65 | -1.69E-46 |
MS.gene055468 | MS.gene40595 | 0.871071 | 9.04E-67 | -1.69E-46 |
MS.gene055512 | MS.gene40595 | 0.839889 | 1.21E-57 | -1.69E-46 |
MS.gene055555 | MS.gene40595 | 0.819398 | 1.19E-52 | -1.69E-46 |
MS.gene055580 | MS.gene40595 | -0.868872 | 4.73E-66 | -1.69E-46 |
MS.gene055778 | MS.gene40595 | 0.800636 | 1.31E-48 | -1.69E-46 |
MS.gene055808 | MS.gene40595 | 0.842156 | 3.07E-58 | -1.69E-46 |
MS.gene055912 | MS.gene40595 | 0.827624 | 1.41E-54 | -1.69E-46 |
MS.gene055979 | MS.gene40595 | 0.82508 | 5.70E-54 | -1.69E-46 |
MS.gene056043 | MS.gene40595 | -0.863519 | 2.35E-64 | -1.69E-46 |
MS.gene056091 | MS.gene40595 | 0.800455 | 1.43E-48 | -1.69E-46 |
MS.gene056215 | MS.gene40595 | 0.879002 | 1.78E-69 | -1.69E-46 |
MS.gene056308 | MS.gene40595 | 0.807771 | 4.30E-50 | -1.69E-46 |
MS.gene056580 | MS.gene40595 | 0.835198 | 1.93E-56 | -1.69E-46 |
MS.gene056595 | MS.gene40595 | 0.811506 | 6.77E-51 | -1.69E-46 |
MS.gene056631 | MS.gene40595 | 0.846745 | 1.79E-59 | -1.69E-46 |
MS.gene056760 | MS.gene40595 | 0.806407 | 8.35E-50 | -1.69E-46 |
MS.gene057140 | MS.gene40595 | 0.816827 | 4.52E-52 | -1.69E-46 |
MS.gene057234 | MS.gene40595 | 0.801052 | 1.08E-48 | -1.69E-46 |
MS.gene057287 | MS.gene40595 | 0.810825 | 9.51E-51 | -1.69E-46 |
MS.gene057314 | MS.gene40595 | 0.806565 | 7.73E-50 | -1.69E-46 |
MS.gene057693 | MS.gene40595 | 0.82643 | 2.73E-54 | -1.69E-46 |
MS.gene057694 | MS.gene40595 | 0.822393 | 2.43E-53 | -1.69E-46 |
MS.gene057705 | MS.gene40595 | 0.872644 | 2.71E-67 | -1.69E-46 |
MS.gene057915 | MS.gene40595 | 0.800415 | 1.46E-48 | -1.69E-46 |
MS.gene058084 | MS.gene40595 | 0.823692 | 1.21E-53 | -1.69E-46 |
MS.gene058216 | MS.gene40595 | 0.830107 | 3.54E-55 | -1.69E-46 |
MS.gene058549 | MS.gene40595 | 0.801067 | 1.07E-48 | -1.69E-46 |
MS.gene058783 | MS.gene40595 | 0.810032 | 1.41E-50 | -1.69E-46 |
MS.gene058906 | MS.gene40595 | 0.832198 | 1.08E-55 | -1.69E-46 |
MS.gene058976 | MS.gene40595 | 0.805763 | 1.14E-49 | -1.69E-46 |
MS.gene059146 | MS.gene40595 | 0.809114 | 2.22E-50 | -1.69E-46 |
MS.gene059151 | MS.gene40595 | 0.814399 | 1.57E-51 | -1.69E-46 |
MS.gene05954 | MS.gene40595 | 0.833652 | 4.72E-56 | -1.69E-46 |
MS.gene05978 | MS.gene40595 | 0.843011 | 1.82E-58 | -1.69E-46 |
MS.gene05979 | MS.gene40595 | 0.808527 | 2.96E-50 | -1.69E-46 |
MS.gene059842 | MS.gene40595 | 0.861044 | 1.35E-63 | -1.69E-46 |
MS.gene059937 | MS.gene40595 | 0.811141 | 8.12E-51 | -1.69E-46 |
MS.gene06001 | MS.gene40595 | 0.858336 | 8.83E-63 | -1.69E-46 |
MS.gene060429 | MS.gene40595 | 0.916668 | 1.35E-85 | -1.69E-46 |
MS.gene060587 | MS.gene40595 | 0.845011 | 5.30E-59 | -1.69E-46 |
MS.gene060763 | MS.gene40595 | 0.80603 | 1.00E-49 | -1.69E-46 |
MS.gene060803 | MS.gene40595 | 0.81773 | 2.83E-52 | -1.69E-46 |
MS.gene060917 | MS.gene40595 | 0.862253 | 5.78E-64 | -1.69E-46 |
MS.gene061176 | MS.gene40595 | 0.828033 | 1.13E-54 | -1.69E-46 |
MS.gene061177 | MS.gene40595 | 0.828854 | 7.13E-55 | -1.69E-46 |
MS.gene061178 | MS.gene40595 | 0.828046 | 1.12E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40595.t1 | MTR_3g109925 | 100.000 | 158 | 0 | 0 | 1 | 158 | 318 | 475 | 1.92e-111 | 325 |
MS.gene40595.t1 | MTR_3g109925 | 100.000 | 158 | 0 | 0 | 1 | 158 | 375 | 532 | 6.98e-111 | 325 |
MS.gene40595.t1 | MTR_8g105970 | 92.437 | 119 | 9 | 0 | 3 | 121 | 235 | 353 | 3.30e-77 | 234 |
MS.gene40595.t1 | MTR_7g113470 | 37.821 | 156 | 97 | 0 | 1 | 156 | 362 | 517 | 1.49e-32 | 120 |
MS.gene40595.t1 | MTR_3g086330 | 38.710 | 155 | 94 | 1 | 3 | 156 | 377 | 531 | 2.20e-32 | 120 |
MS.gene40595.t1 | MTR_7g067470 | 37.179 | 156 | 98 | 0 | 1 | 156 | 362 | 517 | 6.43e-32 | 119 |
MS.gene40595.t1 | MTR_5g087560 | 36.943 | 157 | 96 | 2 | 2 | 155 | 370 | 526 | 2.92e-27 | 106 |
MS.gene40595.t1 | MTR_2g013540 | 37.419 | 155 | 96 | 1 | 3 | 156 | 221 | 375 | 3.56e-24 | 97.1 |
MS.gene40595.t1 | MTR_2g013540 | 37.419 | 155 | 96 | 1 | 3 | 156 | 370 | 524 | 6.89e-24 | 97.1 |
MS.gene40595.t1 | MTR_8g088270 | 35.443 | 158 | 94 | 1 | 6 | 155 | 377 | 534 | 1.39e-23 | 96.3 |
MS.gene40595.t1 | MTR_1g030650 | 30.719 | 153 | 106 | 0 | 6 | 158 | 374 | 526 | 1.49e-22 | 93.2 |
MS.gene40595.t1 | MTR_6g032870 | 31.373 | 153 | 105 | 0 | 6 | 158 | 371 | 523 | 2.66e-22 | 92.4 |
MS.gene40595.t1 | MTR_4g057020 | 96.667 | 30 | 1 | 0 | 1 | 30 | 101 | 130 | 1.43e-12 | 62.0 |
MS.gene40595.t1 | MTR_7g406870 | 26.144 | 153 | 111 | 2 | 4 | 155 | 374 | 525 | 4.67e-11 | 60.1 |
MS.gene40595.t1 | MTR_7g406870 | 26.144 | 153 | 111 | 2 | 4 | 155 | 262 | 413 | 6.09e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40595.t1 | AT3G18190 | 93.038 | 158 | 11 | 0 | 1 | 158 | 379 | 536 | 4.98e-105 | 310 |
MS.gene40595.t1 | AT1G24510 | 42.949 | 156 | 88 | 1 | 2 | 156 | 300 | 455 | 1.16e-35 | 128 |
MS.gene40595.t1 | AT1G24510 | 42.949 | 156 | 88 | 1 | 2 | 156 | 323 | 478 | 1.22e-35 | 129 |
MS.gene40595.t1 | AT1G24510 | 43.226 | 155 | 87 | 1 | 3 | 156 | 377 | 531 | 1.99e-35 | 129 |
MS.gene40595.t1 | AT5G20890 | 37.821 | 156 | 97 | 0 | 1 | 156 | 362 | 517 | 4.15e-31 | 117 |
MS.gene40595.t1 | AT3G11830 | 36.306 | 157 | 97 | 2 | 2 | 155 | 370 | 526 | 3.18e-27 | 106 |
MS.gene40595.t1 | AT3G11830 | 36.306 | 157 | 95 | 3 | 2 | 155 | 370 | 524 | 1.38e-25 | 102 |
MS.gene40595.t1 | AT3G20050 | 36.709 | 158 | 92 | 1 | 6 | 155 | 377 | 534 | 1.65e-24 | 99.0 |
MS.gene40595.t1 | AT3G03960 | 31.169 | 154 | 106 | 0 | 5 | 158 | 376 | 529 | 1.99e-23 | 95.9 |
MS.gene40595.t1 | AT5G26360 | 37.419 | 155 | 96 | 1 | 3 | 156 | 370 | 524 | 1.66e-21 | 90.1 |
MS.gene40595.t1 | AT5G16070 | 30.323 | 155 | 94 | 5 | 4 | 146 | 373 | 525 | 3.65e-12 | 63.5 |
MS.gene40595.t1 | AT3G02530 | 29.221 | 154 | 97 | 4 | 4 | 146 | 374 | 526 | 1.84e-11 | 61.6 |
Find 36 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATTCTCAGCAAGGGTATA+TGG | 0.307049 | 3.3:+90259661 | None:intergenic |
TGTCAAGGCAATTGGGTGCT+TGG | 0.354279 | 3.3:-90259750 | MS.gene40595:CDS |
GATAGAGCTGTCAAGGCAAT+TGG | 0.370145 | 3.3:-90259758 | MS.gene40595:CDS |
ATGATGCTTTGTGTGTTGTT+AGG | 0.372583 | 3.3:-90259828 | MS.gene40595:CDS |
GTCAAGGCAATTGGGTGCTT+GGG | 0.415529 | 3.3:-90259749 | MS.gene40595:CDS |
AGCTCAGTAACAATTGCAAT+CGG | 0.423035 | 3.3:+90259628 | None:intergenic |
TTTGTGTGTTGTTAGGTGTT+TGG | 0.427682 | 3.3:-90259821 | MS.gene40595:CDS |
ACCACAACTGTGCTTGTTCG+TGG | 0.463002 | 3.3:-90259892 | MS.gene40595:CDS |
GAATGTGGTGCAGCCATTGC+TGG | 0.481414 | 3.3:-90259527 | MS.gene40595:CDS |
GCAATTGGGTGCTTGGGCTA+AGG | 0.488468 | 3.3:-90259743 | MS.gene40595:CDS |
TATACCCTTGCTGAGAATGC+AGG | 0.493053 | 3.3:-90259658 | MS.gene40595:CDS |
CTGAGGAATCGTCATGCTAA+AGG | 0.500255 | 3.3:-90259607 | MS.gene40595:CDS |
TCAACACTGGAATCAATGTC+AGG | 0.507995 | 3.3:-90259579 | MS.gene40595:CDS |
ATAGAGCTGTCAAGGCAATT+GGG | 0.513984 | 3.3:-90259757 | MS.gene40595:CDS |
GATTGCAGGTGGTGGTGCTC+CGG | 0.514051 | 3.3:-90259782 | MS.gene40595:CDS |
TGCCTTGACAGCTCTATCTC+CGG | 0.516484 | 3.3:+90259763 | None:intergenic |
CTCCGGAGATAGAGCTGTCA+AGG | 0.563162 | 3.3:-90259765 | MS.gene40595:CDS |
CCTCACACACTCTGTTGCCA+AGG | 0.573445 | 3.3:+90259486 | None:intergenic |
TGGAACAACTTCAAGTGCCT+CGG | 0.574575 | 3.3:+90259681 | None:intergenic |
GCTCAGTAACAATTGCAATC+GGG | 0.575791 | 3.3:+90259629 | None:intergenic |
GCACTTGTGCTAACCAGCAA+TGG | 0.592202 | 3.3:+90259514 | None:intergenic |
TCAAACCTGCATTCTCAGCA+AGG | 0.593910 | 3.3:+90259653 | None:intergenic |
CTGTATTCGTGCATTTGCCG+AGG | 0.594695 | 3.3:-90259698 | MS.gene40595:CDS |
ACACTCTGTTGCCAAGGTGA+TGG | 0.598855 | 3.3:+90259492 | None:intergenic |
GCTAAAGGTGAGATCAACAC+TGG | 0.604820 | 3.3:-90259592 | MS.gene40595:CDS |
TTGCAATTGTTACTGAGCTG+AGG | 0.612866 | 3.3:-90259624 | MS.gene40595:CDS |
TCCACGAACAAGCACAGTTG+TGG | 0.612984 | 3.3:+90259891 | None:intergenic |
GCTGCACCACATTCTCCTCA+AGG | 0.613760 | 3.3:+90259536 | None:intergenic |
TAGCACAAGTGCCATCACCT+TGG | 0.618089 | 3.3:-90259503 | MS.gene40595:CDS |
TCAAATTACAAACATCCTTG+AGG | 0.621720 | 3.3:-90259551 | MS.gene40595:CDS |
ACTGGAATCAATGTCAGGAA+AGG | 0.625427 | 3.3:-90259574 | MS.gene40595:CDS |
AAACATCCTTGAGGAGAATG+TGG | 0.628033 | 3.3:-90259542 | MS.gene40595:CDS |
TTAGGTGTTTGGTTGCCAAG+AGG | 0.631658 | 3.3:-90259810 | MS.gene40595:CDS |
CCTTGGCAACAGAGTGTGTG+AGG | 0.652881 | 3.3:-90259486 | MS.gene40595:CDS |
CAAACCTGCATTCTCAGCAA+GGG | 0.653006 | 3.3:+90259654 | None:intergenic |
TTGATGATATTGTAACTGTG+AGG | 0.759737 | 3.3:-90259450 | MS.gene40595:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
TCAAATTACAAACATCCTTG+AGG | - | chr3.3:90259797-90259816 | MS.gene40595:CDS | 30.0% | |
! | TTGATGATATTGTAACTGTG+AGG | - | chr3.3:90259898-90259917 | MS.gene40595:CDS | 30.0% |
AGCTCAGTAACAATTGCAAT+CGG | + | chr3.3:90259723-90259742 | None:intergenic | 35.0% | |
! | ATGATGCTTTGTGTGTTGTT+AGG | - | chr3.3:90259520-90259539 | MS.gene40595:CDS | 35.0% |
! | TTTGTGTGTTGTTAGGTGTT+TGG | - | chr3.3:90259527-90259546 | MS.gene40595:CDS | 35.0% |
AAACATCCTTGAGGAGAATG+TGG | - | chr3.3:90259806-90259825 | MS.gene40595:CDS | 40.0% | |
ACCTGCAATCAAAAACCTCT+TGG | + | chr3.3:90259556-90259575 | None:intergenic | 40.0% | |
ACTGGAATCAATGTCAGGAA+AGG | - | chr3.3:90259774-90259793 | MS.gene40595:CDS | 40.0% | |
ATAGAGCTGTCAAGGCAATT+GGG | - | chr3.3:90259591-90259610 | MS.gene40595:CDS | 40.0% | |
GCTCAGTAACAATTGCAATC+GGG | + | chr3.3:90259722-90259741 | None:intergenic | 40.0% | |
TCAACACTGGAATCAATGTC+AGG | - | chr3.3:90259769-90259788 | MS.gene40595:CDS | 40.0% | |
TTGCAATTGTTACTGAGCTG+AGG | - | chr3.3:90259724-90259743 | MS.gene40595:CDS | 40.0% | |
!! | AAGAGGTTTTTGATTGCAGG+TGG | - | chr3.3:90259555-90259574 | MS.gene40595:CDS | 40.0% |
CAAACCTGCATTCTCAGCAA+GGG | + | chr3.3:90259697-90259716 | None:intergenic | 45.0% | |
CTGAGGAATCGTCATGCTAA+AGG | - | chr3.3:90259741-90259760 | MS.gene40595:CDS | 45.0% | |
GATAGAGCTGTCAAGGCAAT+TGG | - | chr3.3:90259590-90259609 | MS.gene40595:CDS | 45.0% | |
GCTAAAGGTGAGATCAACAC+TGG | - | chr3.3:90259756-90259775 | MS.gene40595:CDS | 45.0% | |
TATACCCTTGCTGAGAATGC+AGG | - | chr3.3:90259690-90259709 | MS.gene40595:CDS | 45.0% | |
TCAAACCTGCATTCTCAGCA+AGG | + | chr3.3:90259698-90259717 | None:intergenic | 45.0% | |
TGGAACAACTTCAAGTGCCT+CGG | + | chr3.3:90259670-90259689 | None:intergenic | 45.0% | |
TTAGGTGTTTGGTTGCCAAG+AGG | - | chr3.3:90259538-90259557 | MS.gene40595:CDS | 45.0% | |
! | AAGGTTTTGCATGGGATGGA+GGG | - | chr3.3:90259624-90259643 | MS.gene40595:CDS | 45.0% |
! | CTTGGGCTAAGGTTTTGCAT+GGG | - | chr3.3:90259616-90259635 | MS.gene40595:CDS | 45.0% |
! | GCATTCTCAGCAAGGGTATA+TGG | + | chr3.3:90259690-90259709 | None:intergenic | 45.0% |
! | TAAGGTTTTGCATGGGATGG+AGG | - | chr3.3:90259623-90259642 | MS.gene40595:CDS | 45.0% |
!! | AGGTTTTTGATTGCAGGTGG+TGG | - | chr3.3:90259558-90259577 | MS.gene40595:CDS | 45.0% |
!! | GCCAAGAGGTTTTTGATTGC+AGG | - | chr3.3:90259552-90259571 | MS.gene40595:CDS | 45.0% |
ACACTCTGTTGCCAAGGTGA+TGG | + | chr3.3:90259859-90259878 | None:intergenic | 50.0% | |
ACCACAACTGTGCTTGTTCG+TGG | - | chr3.3:90259456-90259475 | MS.gene40595:CDS | 50.0% | |
CTGTATTCGTGCATTTGCCG+AGG | - | chr3.3:90259650-90259669 | MS.gene40595:CDS | 50.0% | |
GCACTTGTGCTAACCAGCAA+TGG | + | chr3.3:90259837-90259856 | None:intergenic | 50.0% | |
GTCAAGGCAATTGGGTGCTT+GGG | - | chr3.3:90259599-90259618 | MS.gene40595:CDS | 50.0% | |
TAGCACAAGTGCCATCACCT+TGG | - | chr3.3:90259845-90259864 | MS.gene40595:CDS | 50.0% | |
TCCACGAACAAGCACAGTTG+TGG | + | chr3.3:90259460-90259479 | None:intergenic | 50.0% | |
TGCCTTGACAGCTCTATCTC+CGG | + | chr3.3:90259588-90259607 | None:intergenic | 50.0% | |
TGTCAAGGCAATTGGGTGCT+TGG | - | chr3.3:90259598-90259617 | MS.gene40595:CDS | 50.0% | |
! | GCTTGGGCTAAGGTTTTGCA+TGG | - | chr3.3:90259615-90259634 | MS.gene40595:CDS | 50.0% |
! | GGCTAAGGTTTTGCATGGGA+TGG | - | chr3.3:90259620-90259639 | MS.gene40595:CDS | 50.0% |
CCTCACACACTCTGTTGCCA+AGG | + | chr3.3:90259865-90259884 | None:intergenic | 55.0% | |
CCTTGGCAACAGAGTGTGTG+AGG | - | chr3.3:90259862-90259881 | MS.gene40595:CDS | 55.0% | |
CTCCGGAGATAGAGCTGTCA+AGG | - | chr3.3:90259583-90259602 | MS.gene40595:CDS | 55.0% | |
GAATGTGGTGCAGCCATTGC+TGG | - | chr3.3:90259821-90259840 | MS.gene40595:CDS | 55.0% | |
GCAATTGGGTGCTTGGGCTA+AGG | - | chr3.3:90259605-90259624 | MS.gene40595:CDS | 55.0% | |
GCTGCACCACATTCTCCTCA+AGG | + | chr3.3:90259815-90259834 | None:intergenic | 55.0% | |
! | GATTGCAGGTGGTGGTGCTC+CGG | - | chr3.3:90259566-90259585 | MS.gene40595:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 90259447 | 90259923 | 90259447 | ID=MS.gene40595 |
chr3.3 | mRNA | 90259447 | 90259923 | 90259447 | ID=MS.gene40595.t1;Parent=MS.gene40595 |
chr3.3 | exon | 90259447 | 90259923 | 90259447 | ID=MS.gene40595.t1.exon1;Parent=MS.gene40595.t1 |
chr3.3 | CDS | 90259447 | 90259923 | 90259447 | ID=cds.MS.gene40595.t1;Parent=MS.gene40595.t1 |
Gene Sequence |
Protein sequence |