AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49050.t1 MTR_1g101400 98.675 302 4 0 1 302 1 302 0.0 610
MS.gene49050.t1 MTR_2g021790 54.412 68 26 2 43 108 1 65 2.85e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49050.t1 AT5G52100 75.000 304 68 4 1 302 1 298 5.41e-163 455

Find 70 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGACCTTACTATGGTTT+TGG 0.191058 1.3:-69866797 MS.gene49050:CDS
GTGGAACAGGTTGTAATAAA+TGG 0.207909 1.3:-69867099 MS.gene49050:intron
AAAGGCAAGGGGTCAAGTTT+TGG 0.246017 1.3:-69865437 MS.gene49050:intron
TAGAGAGATTGTTGGCAATT+TGG 0.249550 1.3:+69865606 None:intergenic
TTGAGAATTCAAGTAGTTGA+TGG 0.320100 1.3:+69867269 None:intergenic
CAATTTCGACATTGCGGTAA+TGG 0.331384 1.3:+69865896 None:intergenic
TATACTAAATGACCTTACTA+TGG 0.353599 1.3:-69866803 MS.gene49050:CDS
CAACATGTTGGGGAAGATAT+TGG 0.357960 1.3:-69866994 MS.gene49050:CDS
ACTGTATAGGCAACAGCATT+TGG 0.373770 1.3:-69866263 MS.gene49050:intron
GACTACGACCGCTGTGGCCT+TGG 0.379286 1.3:+69866655 None:intergenic
ACCTATACAAAGCAATATAA+AGG 0.399746 1.3:-69867199 MS.gene49050:intron
GTTGGCAATTTGGTTTGCTT+CGG 0.404040 1.3:+69865616 None:intergenic
TGGAATTCGCGTGCACAGTT+TGG 0.408268 1.3:-69865410 MS.gene49050:CDS
CTATTGATACTCAACATGTT+GGG 0.408524 1.3:-69867005 MS.gene49050:CDS
CTGCAACAATATTGATCCTA+TGG 0.409023 1.3:+69865942 None:intergenic
AGTAGTTGATGGAATGAAAC+TGG 0.415845 1.3:+69867280 None:intergenic
ATCTGTGATATCATGCTTGA+TGG 0.417837 1.3:+69865075 None:intergenic
AGTGTATGACAATGTAAAAC+AGG 0.430905 1.3:-69866612 MS.gene49050:intron
GCCAGAGGAATGGAAGTTGC+TGG 0.433583 1.3:-69867030 MS.gene49050:CDS
ACCTTTATATTGCTTTGTAT+AGG 0.435394 1.3:+69867198 None:intergenic
TTGTATAGGTTGTGCTGTGC+AGG 0.447611 1.3:+69867212 None:intergenic
TCCAGCAACTTCCATTCCTC+TGG 0.450267 1.3:+69867029 None:intergenic
TCTTACATTTGCATTAGCCT+TGG 0.452314 1.3:+69865867 None:intergenic
CAACTACTTGAATTCTCAAA+TGG 0.460268 1.3:-69867265 MS.gene49050:CDS
TCACCCCATGCTCACCATGC+TGG 0.471548 1.3:+69866166 None:intergenic
GAAGAACTTGGTATACGGCT+TGG 0.478531 1.3:-69864903 MS.gene49050:intron
ATTTGGTTTGCTTCGGCCGA+TGG 0.481953 1.3:+69865623 None:intergenic
GGAATGAAACTGGCAGCTTA+AGG 0.481987 1.3:+69867290 None:intergenic
ACCGAGGTTAGAGAGATTGT+TGG 0.485133 1.3:+69865598 None:intergenic
CTAATGGCTAATAGCAAGCC+TGG 0.489682 1.3:+69865037 None:intergenic
TTTCCTGTAGCTTTGTGGCA+TGG 0.496064 1.3:-69866845 MS.gene49050:intron
GCTATTGATACTCAACATGT+TGG 0.498878 1.3:-69867006 MS.gene49050:CDS
ACCGTATCTAATTTGATTCG+CGG 0.502405 1.3:+69866218 None:intergenic
AGACTCCTCAACAGATGTCT+TGG 0.508028 1.3:-69865558 MS.gene49050:intron
GTTGCTCCAACGCTTTCCAT+AGG 0.508224 1.3:-69865958 MS.gene49050:CDS
TAGAACCCAAAACCATAGTA+AGG 0.510640 1.3:+69866791 None:intergenic
ACTATAATGACAGGGTGTCT+TGG 0.515706 1.3:-69865980 MS.gene49050:intron
ATAGTAAGGTCATTTAGTAT+AGG 0.525371 1.3:+69866805 None:intergenic
AGGATCAATATTGTTGCAGC+AGG 0.526093 1.3:-69865938 MS.gene49050:CDS
GTCATACACTGCGGAAGGGT+CGG 0.540214 1.3:+69866625 None:intergenic
TGTAATAAATGGAGCAGCAA+AGG 0.543811 1.3:-69867088 MS.gene49050:CDS
GCCAACAATCTCTCTAACCT+CGG 0.544225 1.3:-69865599 MS.gene49050:CDS
AGCAGTATTAGCTGTGACAA+AGG 0.549949 1.3:-69867052 MS.gene49050:CDS
ACATTGTCATACACTGCGGA+AGG 0.552865 1.3:+69866620 None:intergenic
TGTTGGGGAAGATATTGGAC+AGG 0.558324 1.3:-69866989 MS.gene49050:intron
TTACCGCAATGTCGAAATTG+TGG 0.563978 1.3:-69865893 MS.gene49050:CDS
TGTTATACAGGATCTTCCAT+CGG 0.565260 1.3:-69865639 MS.gene49050:intron
TGTCGAAATTGTGGAATCCA+AGG 0.571619 1.3:-69865884 MS.gene49050:CDS
ATTGATCCTATGGAAAGCGT+TGG 0.571844 1.3:+69865952 None:intergenic
GATGTACAATGTCTTATGCC+AGG 0.572407 1.3:-69865055 MS.gene49050:CDS
AAGTGAACTGTTGTACTAGA+GGG 0.580769 1.3:+69865373 None:intergenic
AAAGTGAACTGTTGTACTAG+AGG 0.590884 1.3:+69865372 None:intergenic
TGTGACAAAGGCCAGAGGAA+TGG 0.593244 1.3:-69867040 MS.gene49050:CDS
GTTGTACTAGAGGGAAGCCC+TGG 0.594961 1.3:+69865382 None:intergenic
AATGGAGCAGCAAAGGAGGT+AGG 0.602441 1.3:-69867081 MS.gene49050:CDS
GCCGCGAATCAAATTAGATA+CGG 0.602862 1.3:-69866219 MS.gene49050:CDS
TATTGATACTCAACATGTTG+GGG 0.603145 1.3:-69867004 MS.gene49050:CDS
TTTAGTATAGGTATTTCAAG+AGG 0.603621 1.3:+69866817 None:intergenic
AATAAATGGAGCAGCAAAGG+AGG 0.611168 1.3:-69867085 MS.gene49050:CDS
ATTATCAGCATTCTGTGAGA+AGG 0.611346 1.3:-69866189 MS.gene49050:CDS
TAGAAAAGTAGTGCGCCTCA+AGG 0.613059 1.3:-69865017 MS.gene49050:intron
ATTCTGTGAGAAGGCCAGCA+TGG 0.629094 1.3:-69866180 MS.gene49050:intron
CCTTACCAAGACATCTGTTG+AGG 0.630824 1.3:+69865553 None:intergenic
CATTGTCATACACTGCGGAA+GGG 0.634942 1.3:+69866621 None:intergenic
ATTCCACAATTTCGACATTG+CGG 0.643338 1.3:+69865890 None:intergenic
CTCTGTTATAGATTTGACCG+AGG 0.649127 1.3:+69865582 None:intergenic
TATCACACGACAAAGGCAAG+GGG 0.699381 1.3:-69865448 MS.gene49050:intron
GAAATCGACTACGACCGCTG+TGG 0.707192 1.3:+69866649 None:intergenic
TTAGCTGTGACAAAGGCCAG+AGG 0.735270 1.3:-69867045 MS.gene49050:CDS
TTTGTAGTCCAAGGCCACAG+CGG 0.738213 1.3:-69866663 MS.gene49050:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATTTAGTCAATTTA+AGG - chr1.3:69867037-69867056 MS.gene49050:CDS 10.0%
!! AAGACTGATAGTTTATTTAT+TGG - chr1.3:69865681-69865700 MS.gene49050:intron 20.0%
!! AAGATGAAGTGTAAATTAAA+TGG - chr1.3:69865649-69865668 MS.gene49050:intron 20.0%
!! AGACTGATAGTTTATTTATT+GGG - chr1.3:69865682-69865701 MS.gene49050:intron 20.0%
!! ATATAAGCACTTAATTAACA+TGG - chr1.3:69865305-69865324 MS.gene49050:intron 20.0%
!! CTACAGGAAAATAAAAAATT+AGG + chr1.3:69865331-69865350 None:intergenic 20.0%
!! TTATGGTAAAATCTATTTAG+AGG - chr1.3:69866384-69866403 MS.gene49050:intron 20.0%
!!! TAAATAGATTTTACCATAAG+TGG + chr1.3:69866383-69866402 None:intergenic 20.0%
!!! TTATATTTTTGTGAGTAAGT+TGG + chr1.3:69866896-69866915 None:intergenic 20.0%
! AAACTCATAATTGTAGCATT+AGG - chr1.3:69865859-69865878 MS.gene49050:intron 25.0%
! AAATGCCAAAAAAGAACAAA+TGG + chr1.3:69866181-69866200 None:intergenic 25.0%
! AATTATTTATCACACGACAA+AGG - chr1.3:69866731-69866750 MS.gene49050:intron 25.0%
! ACCTATACAAAGCAATATAA+AGG - chr1.3:69864987-69865006 MS.gene49050:intron 25.0%
! ACCTTTATATTGCTTTGTAT+AGG + chr1.3:69864991-69865010 None:intergenic 25.0%
! AGTGTAAATTAAATGGTTCT+TGG - chr1.3:69865656-69865675 MS.gene49050:intron 25.0%
! ATAGTAAGGTCATTTAGTAT+AGG + chr1.3:69865384-69865403 None:intergenic 25.0%
! ATTTGGTTAACTATAATGAC+AGG - chr1.3:69866197-69866216 MS.gene49050:CDS 25.0%
! CTTCATCTTAAATGCATATT+TGG + chr1.3:69865638-69865657 None:intergenic 25.0%
! TAAAGTAGGAAATAACTGAA+AGG + chr1.3:69866120-69866139 None:intergenic 25.0%
! TATACTAAATGACCTTACTA+TGG - chr1.3:69865383-69865402 MS.gene49050:CDS 25.0%
! TGAATTAGCAATAACAAACT+TGG - chr1.3:69865440-69865459 MS.gene49050:intron 25.0%
! TTATGTTCAATATCCACTTA+TGG - chr1.3:69866367-69866386 MS.gene49050:intron 25.0%
! TTTAGTATAGGTATTTCAAG+AGG + chr1.3:69865372-69865391 None:intergenic 25.0%
! TTTGGTTAACTATAATGACA+GGG - chr1.3:69866198-69866217 MS.gene49050:CDS 25.0%
!! AAGTCTGTTTTGTATAAAGT+AGG + chr1.3:69866134-69866153 None:intergenic 25.0%
!! ATTTCAAGTGATAGGATAAT+AGG - chr1.3:69865808-69865827 MS.gene49050:intron 25.0%
!! TTCTTTTAGATCATTCTGTT+TGG - chr1.3:69867226-69867245 MS.gene49050:CDS 25.0%
!! TTTTCATACTTCATAGCTAA+AGG - chr1.3:69865780-69865799 MS.gene49050:intron 25.0%
!!! ATTTGTTCTTTTTTGGCATT+TGG - chr1.3:69866180-69866199 MS.gene49050:intron 25.0%
!!! CTAAACCATTTGTTCTTTTT+TGG - chr1.3:69866173-69866192 MS.gene49050:intron 25.0%
!!! TTGATTCTTTTTCACTGTAT+AGG - chr1.3:69865910-69865929 MS.gene49050:CDS 25.0%
!!! TTTTTGAAGAACTTGGTATA+CGG - chr1.3:69867278-69867297 MS.gene49050:CDS 25.0%
!!! TTTTTGTTTAAGAGTGCTTA+TGG - chr1.3:69865220-69865239 MS.gene49050:intron 25.0%
AAGAGCTTCTTCAGTATATT+TGG + chr1.3:69866528-69866547 None:intergenic 30.0%
AATGAGAAGATAGTACACTT+TGG + chr1.3:69867065-69867084 None:intergenic 30.0%
ACCAAGTTCTTCAAAAATGA+AGG + chr1.3:69867275-69867294 None:intergenic 30.0%
AGAATAAAATGTGTTCACCA+AGG + chr1.3:69866861-69866880 None:intergenic 30.0%
AGATTGAAGAGTAGATTATG+TGG - chr1.3:69865834-69865853 MS.gene49050:intron 30.0%
AGTGTATGACAATGTAAAAC+AGG - chr1.3:69865574-69865593 MS.gene49050:CDS 30.0%
CAACTACTTGAATTCTCAAA+TGG - chr1.3:69864921-69864940 MS.gene49050:intron 30.0%
CAAGTTCTTCAAAAATGAAG+GGG + chr1.3:69867273-69867292 None:intergenic 30.0%
CATAATCTACTCTTCAATCT+TGG + chr1.3:69865834-69865853 None:intergenic 30.0%
CCAACAGACTAATATATTGT+TGG - chr1.3:69865612-69865631 MS.gene49050:CDS 30.0%
CCAAGTTCTTCAAAAATGAA+GGG + chr1.3:69867274-69867293 None:intergenic 30.0%
CTATTGATACTCAACATGTT+GGG - chr1.3:69865181-69865200 MS.gene49050:intron 30.0%
GAAATAACTGAAAGGACAAA+AGG + chr1.3:69866112-69866131 None:intergenic 30.0%
GCTTAGACTTAAAATAGTTG+AGG + chr1.3:69867197-69867216 None:intergenic 30.0%
GTGGATATTGAACATAAACA+AGG + chr1.3:69866364-69866383 None:intergenic 30.0%
TATTGATACTCAACATGTTG+GGG - chr1.3:69865182-69865201 MS.gene49050:intron 30.0%
TGTACTATCTTCTCATTATG+AGG - chr1.3:69867068-69867087 MS.gene49050:CDS 30.0%
TTAGTAGTAGCAGATTTAGT+CGG + chr1.3:69866157-69866176 None:intergenic 30.0%
TTGAGAATTCAAGTAGTTGA+TGG + chr1.3:69864920-69864939 None:intergenic 30.0%
! AAATGACCTTACTATGGTTT+TGG - chr1.3:69865389-69865408 MS.gene49050:CDS 30.0%
! AATGACCTTACTATGGTTTT+GGG - chr1.3:69865390-69865409 MS.gene49050:CDS 30.0%
! AGGAAACAATTTCAAGTGAT+AGG - chr1.3:69865800-69865819 MS.gene49050:intron 30.0%
! CCAACAATATATTAGTCTGT+TGG + chr1.3:69865615-69865634 None:intergenic 30.0%
! TTTTACATTGTCATACACTG+CGG + chr1.3:69865573-69865592 None:intergenic 30.0%
!! TTTAAGAGTGCTTATGGAAA+TGG - chr1.3:69865226-69865245 MS.gene49050:intron 30.0%
!! TTTATTTTCCTGTAGCTTTG+TGG - chr1.3:69865336-69865355 MS.gene49050:intron 30.0%
AAAGTGAACTGTTGTACTAG+AGG + chr1.3:69866817-69866836 None:intergenic 35.0%
AAGTGAACTGTTGTACTAGA+GGG + chr1.3:69866816-69866835 None:intergenic 35.0%
ATCTGTGATATCATGCTTGA+TGG + chr1.3:69867114-69867133 None:intergenic 35.0%
ATTACAACCTGTTCCACAAA+GGG + chr1.3:69865084-69865103 None:intergenic 35.0%
ATTATCAGCATTCTGTGAGA+AGG - chr1.3:69865997-69866016 MS.gene49050:intron 35.0%
ATTCCACAATTTCGACATTG+CGG + chr1.3:69866299-69866318 None:intergenic 35.0%
CTGCAACAATATTGATCCTA+TGG + chr1.3:69866247-69866266 None:intergenic 35.0%
GAATTGCAATTTGTAGTCCA+AGG - chr1.3:69865514-69865533 MS.gene49050:intron 35.0%
GCTATTGATACTCAACATGT+TGG - chr1.3:69865180-69865199 MS.gene49050:intron 35.0%
GTGGAACAGGTTGTAATAAA+TGG - chr1.3:69865087-69865106 MS.gene49050:intron 35.0%
GTTAAGCTAACTTAACTGAC+TGG - chr1.3:69866429-69866448 MS.gene49050:intron 35.0%
TAGAACCCAAAACCATAGTA+AGG + chr1.3:69865398-69865417 None:intergenic 35.0%
TAGAGAGATTGTTGGCAATT+TGG + chr1.3:69866583-69866602 None:intergenic 35.0%
TATTACAACCTGTTCCACAA+AGG + chr1.3:69865085-69865104 None:intergenic 35.0%
TGTAATAAATGGAGCAGCAA+AGG - chr1.3:69865098-69865117 MS.gene49050:intron 35.0%
TGTTATACAGGATCTTCCAT+CGG - chr1.3:69866547-69866566 MS.gene49050:intron 35.0%
! AAAATAGTTGAGGTACCTTG+AGG + chr1.3:69867187-69867206 None:intergenic 35.0%
! ACCGTATCTAATTTGATTCG+CGG + chr1.3:69865971-69865990 None:intergenic 35.0%
! TCAATTTTCAACACCCTTTG+TGG - chr1.3:69865068-69865087 MS.gene49050:CDS 35.0%
! TCTTACATTTGCATTAGCCT+TGG + chr1.3:69866322-69866341 None:intergenic 35.0%
! TGAAGAAGCTCTTGTTATAC+AGG - chr1.3:69866535-69866554 MS.gene49050:intron 35.0%
! TGTAAAACAGGTTTGAGTTC+TGG - chr1.3:69865586-69865605 MS.gene49050:CDS 35.0%
!! AGTACAACAGTTCACTTTTC+TGG - chr1.3:69866819-69866838 MS.gene49050:CDS 35.0%
!! AGTAGTTGATGGAATGAAAC+TGG + chr1.3:69864909-69864928 None:intergenic 35.0%
!! CCCTTCATTTTTGAAGAACT+TGG - chr1.3:69867271-69867290 MS.gene49050:CDS 35.0%
AATAAATGGAGCAGCAAAGG+AGG - chr1.3:69865101-69865120 MS.gene49050:intron 40.0%
ACTGTATAGGCAACAGCATT+TGG - chr1.3:69865923-69865942 MS.gene49050:CDS 40.0%
AGCAGTATTAGCTGTGACAA+AGG - chr1.3:69865134-69865153 MS.gene49050:intron 40.0%
AGGATCAATATTGTTGCAGC+AGG - chr1.3:69866248-69866267 MS.gene49050:CDS 40.0%
CAACATGTTGGGGAAGATAT+TGG - chr1.3:69865192-69865211 MS.gene49050:intron 40.0%
CAATTTCGACATTGCGGTAA+TGG + chr1.3:69866293-69866312 None:intergenic 40.0%
CTCTGTTATAGATTTGACCG+AGG + chr1.3:69866607-69866626 None:intergenic 40.0%
GATGTACAATGTCTTATGCC+AGG - chr1.3:69867131-69867150 MS.gene49050:intron 40.0%
GCCGCGAATCAAATTAGATA+CGG - chr1.3:69865967-69865986 MS.gene49050:CDS 40.0%
TCTTCATTCCCAAACGAAGA+CGG - chr1.3:69866479-69866498 MS.gene49050:intron 40.0%
TGTCGAAATTGTGGAATCCA+AGG - chr1.3:69866302-69866321 MS.gene49050:intron 40.0%
TTACCGCAATGTCGAAATTG+TGG - chr1.3:69866293-69866312 MS.gene49050:intron 40.0%
TTATCACACGACAAAGGCAA+GGG - chr1.3:69866737-69866756 MS.gene49050:intron 40.0%
TTTATCACACGACAAAGGCA+AGG - chr1.3:69866736-69866755 MS.gene49050:intron 40.0%
! ACTATAATGACAGGGTGTCT+TGG - chr1.3:69866206-69866225 MS.gene49050:CDS 40.0%
! ATTGATCCTATGGAAAGCGT+TGG + chr1.3:69866237-69866256 None:intergenic 40.0%
!! ACAGTTCACTTTTCTGGTCT+TGG - chr1.3:69866825-69866844 MS.gene49050:CDS 40.0%
!! GTTGGCAATTTGGTTTGCTT+CGG + chr1.3:69866573-69866592 None:intergenic 40.0%
!!! GGTTTTGGGTTCTATATCTC+AGG - chr1.3:69865404-69865423 MS.gene49050:CDS 40.0%
!!! TGCACAGTTTGGTTTTACCA+GGG - chr1.3:69866787-69866806 MS.gene49050:CDS 40.0%
ACATTGTCATACACTGCGGA+AGG + chr1.3:69865569-69865588 None:intergenic 45.0%
ACCGAGGTTAGAGAGATTGT+TGG + chr1.3:69866591-69866610 None:intergenic 45.0%
ACCTTTCTCCGTCTTCGTTT+GGG + chr1.3:69866490-69866509 None:intergenic 45.0%
AGACTCCTCAACAGATGTCT+TGG - chr1.3:69866628-69866647 MS.gene49050:CDS 45.0%
CATTGTCATACACTGCGGAA+GGG + chr1.3:69865568-69865587 None:intergenic 45.0%
CCTCAACAGATGTCTTGGTA+AGG - chr1.3:69866633-69866652 MS.gene49050:CDS 45.0%
CCTTACCAAGACATCTGTTG+AGG + chr1.3:69866636-69866655 None:intergenic 45.0%
CTAATGGCTAATAGCAAGCC+TGG + chr1.3:69867152-69867171 None:intergenic 45.0%
GAAGAACTTGGTATACGGCT+TGG - chr1.3:69867283-69867302 MS.gene49050:CDS 45.0%
GCCAACAATCTCTCTAACCT+CGG - chr1.3:69866587-69866606 MS.gene49050:intron 45.0%
GGAATGAAACTGGCAGCTTA+AGG + chr1.3:69864899-69864918 None:intergenic 45.0%
TAGAAAAGTAGTGCGCCTCA+AGG - chr1.3:69867169-69867188 MS.gene49050:intron 45.0%
TATCACACGACAAAGGCAAG+GGG - chr1.3:69866738-69866757 MS.gene49050:intron 45.0%
TGTTGGGGAAGATATTGGAC+AGG - chr1.3:69865197-69865216 MS.gene49050:intron 45.0%
TTCAACACCCTTTGTGGAAC+AGG - chr1.3:69865074-69865093 MS.gene49050:CDS 45.0%
TTGTATAGGTTGTGCTGTGC+AGG + chr1.3:69864977-69864996 None:intergenic 45.0%
! AAAGGCAAGGGGTCAAGTTT+TGG - chr1.3:69866749-69866768 MS.gene49050:intron 45.0%
! AAGGCAAGGGGTCAAGTTTT+GGG - chr1.3:69866750-69866769 MS.gene49050:intron 45.0%
!! GAGGCGCACTACTTTTCTAA+TGG + chr1.3:69867168-69867187 None:intergenic 45.0%
!! TTTCCTGTAGCTTTGTGGCA+TGG - chr1.3:69865341-69865360 MS.gene49050:intron 45.0%
!!! GTGCACAGTTTGGTTTTACC+AGG - chr1.3:69866786-69866805 MS.gene49050:CDS 45.0%
!!! TCACTTTTCTGGTCTTGGAG+AGG - chr1.3:69866830-69866849 MS.gene49050:CDS 45.0%
AATGGAGCAGCAAAGGAGGT+AGG - chr1.3:69865105-69865124 MS.gene49050:intron 50.0%
ATTCTGTGAGAAGGCCAGCA+TGG - chr1.3:69866006-69866025 MS.gene49050:intron 50.0%
CTTCCATGCCACAAAGCTAC+AGG + chr1.3:69865347-69865366 None:intergenic 50.0%
GACCTTTCTCCGTCTTCGTT+TGG + chr1.3:69866491-69866510 None:intergenic 50.0%
GTTGCTCCAACGCTTTCCAT+AGG - chr1.3:69866228-69866247 MS.gene49050:CDS 50.0%
TCCAGCAACTTCCATTCCTC+TGG + chr1.3:69865160-69865179 None:intergenic 50.0%
TCCCAAACGAAGACGGAGAA+AGG - chr1.3:69866486-69866505 MS.gene49050:intron 50.0%
TGGAATTCGCGTGCACAGTT+TGG - chr1.3:69866776-69866795 MS.gene49050:intron 50.0%
TGTGACAAAGGCCAGAGGAA+TGG - chr1.3:69865146-69865165 MS.gene49050:intron 50.0%
TTAGCTGTGACAAAGGCCAG+AGG - chr1.3:69865141-69865160 MS.gene49050:intron 50.0%
TTTGTAGTCCAAGGCCACAG+CGG - chr1.3:69865523-69865542 MS.gene49050:intron 50.0%
!! ATTTGGTTTGCTTCGGCCGA+TGG + chr1.3:69866566-69866585 None:intergenic 50.0%
!!! AGGGGTCAAGTTTTGGGAGA+TGG - chr1.3:69866756-69866775 MS.gene49050:intron 50.0%
AAGGCCAGCATGGTGAGCAT+GGG - chr1.3:69866016-69866035 MS.gene49050:intron 55.0%
GAAATCGACTACGACCGCTG+TGG + chr1.3:69865540-69865559 None:intergenic 55.0%
GCCAGAGGAATGGAAGTTGC+TGG - chr1.3:69865156-69865175 MS.gene49050:intron 55.0%
GTCATACACTGCGGAAGGGT+CGG + chr1.3:69865564-69865583 None:intergenic 55.0%
GTTGTACTAGAGGGAAGCCC+TGG + chr1.3:69866807-69866826 None:intergenic 55.0%
! GTCTTGGAGAGGCATGTCCT+TGG - chr1.3:69866841-69866860 MS.gene49050:intron 55.0%
AGGCCAGCATGGTGAGCATG+GGG - chr1.3:69866017-69866036 MS.gene49050:intron 60.0%
GAAGGCCAGCATGGTGAGCA+TGG - chr1.3:69866015-69866034 MS.gene49050:intron 60.0%
TCACCCCATGCTCACCATGC+TGG + chr1.3:69866023-69866042 None:intergenic 60.0%
GACTACGACCGCTGTGGCCT+TGG + chr1.3:69865534-69865553 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 69864889 69867319 69864889 ID=MS.gene49050
chr1.3 mRNA 69864889 69867319 69864889 ID=MS.gene49050.t1;Parent=MS.gene49050
chr1.3 exon 69867200 69867319 69867200 ID=MS.gene49050.t1.exon1;Parent=MS.gene49050.t1
chr1.3 CDS 69867200 69867319 69867200 ID=cds.MS.gene49050.t1;Parent=MS.gene49050.t1
chr1.3 exon 69866990 69867112 69866990 ID=MS.gene49050.t1.exon2;Parent=MS.gene49050.t1
chr1.3 CDS 69866990 69867112 69866990 ID=cds.MS.gene49050.t1;Parent=MS.gene49050.t1
chr1.3 exon 69866783 69866857 69866783 ID=MS.gene49050.t1.exon3;Parent=MS.gene49050.t1
chr1.3 CDS 69866783 69866857 69866783 ID=cds.MS.gene49050.t1;Parent=MS.gene49050.t1
chr1.3 exon 69866613 69866678 69866613 ID=MS.gene49050.t1.exon4;Parent=MS.gene49050.t1
chr1.3 CDS 69866613 69866678 69866613 ID=cds.MS.gene49050.t1;Parent=MS.gene49050.t1
chr1.3 exon 69866181 69866276 69866181 ID=MS.gene49050.t1.exon5;Parent=MS.gene49050.t1
chr1.3 CDS 69866181 69866276 69866181 ID=cds.MS.gene49050.t1;Parent=MS.gene49050.t1
chr1.3 exon 69865873 69865989 69865873 ID=MS.gene49050.t1.exon6;Parent=MS.gene49050.t1
chr1.3 CDS 69865873 69865989 69865873 ID=cds.MS.gene49050.t1;Parent=MS.gene49050.t1
chr1.3 exon 69865559 69865651 69865559 ID=MS.gene49050.t1.exon7;Parent=MS.gene49050.t1
chr1.3 CDS 69865559 69865651 69865559 ID=cds.MS.gene49050.t1;Parent=MS.gene49050.t1
chr1.3 exon 69865357 69865455 69865357 ID=MS.gene49050.t1.exon8;Parent=MS.gene49050.t1
chr1.3 CDS 69865357 69865455 69865357 ID=cds.MS.gene49050.t1;Parent=MS.gene49050.t1
chr1.3 exon 69865018 69865104 69865018 ID=MS.gene49050.t1.exon9;Parent=MS.gene49050.t1
chr1.3 CDS 69865018 69865104 69865018 ID=cds.MS.gene49050.t1;Parent=MS.gene49050.t1
chr1.3 exon 69864889 69864921 69864889 ID=MS.gene49050.t1.exon10;Parent=MS.gene49050.t1
chr1.3 CDS 69864889 69864921 69864889 ID=cds.MS.gene49050.t1;Parent=MS.gene49050.t1
Gene Sequence

>MS.gene49050

ATGGCTGCCTTAAGCTGCCAGTTTCATTCCATCAACTACTTGAATTCTCAAATGGTCAAAAGCAGAAGCAATCATTCTATAATTTCCTGCACAGCACAACCTATACAAAGCAATATAAAGGTACTAACTTAAAGAGCATTTCAAAATTCAACACTTTGATTCAGTTCAAATTTGTGATTTCAATTTTCAACACCCTTTGTGGAACAGGTTGTAATAAATGGAGCAGCAAAGGAGGTAGGAAGAGCAGCAGTATTAGCTGTGACAAAGGCCAGAGGAATGGAAGTTGCTGGAGCTATTGATACTCAACATGTTGGGGAAGATATTGGACAGGTTTTTGTTTAAGAGTGCTTATGGAAATGGCTTTTATATGAAAATAGTTTGACTTTATTTTATTATTTATTATAGAAATGACTTTTATATAAGCACTTAATTAACATGGCCTAATTTTTTATTTTCCTGTAGCTTTGTGGCATGGAAGAGCCTCTTGAAATACCTATACTAAATGACCTTACTATGGTTTTGGGTTCTATATCTCAGGTAATGTGAAATTGTGAATTAGCAATAACAAACTTGGTATTATTCAATTAGTATTTCTTTAATCTTTTTGTATCTACAATGACTTTTTGAATTGCAATTTGTAGTCCAAGGCCACAGCGGTCGTAGTCGATTTCACCGACCCTTCCGCAGTGTATGACAATGTAAAACAGGTTTGAGTTCTGGTTACCAACAGACTAATATATTGTTGGCCAAATATGCATTTAAGATGAAGTGTAAATTAAATGGTTCTTGGCTAAGACTGATAGTTTATTTATTGGGATTCTTAATTAGCTAAAAATAGCATTACTATGATAGTAATAGTCTATTACTAATAGACAGAATTTTCAAAGCAATTTTTCATACTTCATAGCTAAAGGAAACAATTTCAAGTGATAGGATAATAGGCCAAGATTGAAGAGTAGATTATGTGGAGAAACTCATAATTGTAGCATTAGGCTATGATTTTAGAATACTTGAACATTGATTGATTCTTTTTCACTGTATAGGCAACAGCATTTGGCATGAAAAGTGTTGTTTACGTGCCGCGAATCAAATTAGATACGGTTGCAGCATTATCAGCATTCTGTGAGAAGGCCAGCATGGTGAGCATGGGGTGAGACTTATACTTATAAGAACTAATGCATAGTCTGCTTGAACTTAATTATGTTCTCTTTTCTATATATCCTTTTGTCCTTTCAGTTATTTCCTACTTTATACAAAACAGACTTCCGACTAAATCTGCTACTACTAAACCATTTGTTCTTTTTTGGCATTTGGTTAACTATAATGACAGGGTGTCTTGGTTGCTCCAACGCTTTCCATAGGATCAATATTGTTGCAGCAGGCTGCAATTTCAGCTTCTTTCCATTACCGCAATGTCGAAATTGTGGAATCCAAGGCTAATGCAAATGTAAGAATGAATCATTTTTATTTTTCCTTGTTTATGTTCAATATCCACTTATGGTAAAATCTATTTAGAGGTAAATGTTTGTTACACTAGTTAGTTAAGCTAACTTAACTGACTGGTATAACTAACTTTTACATGTAATAAAATCTTCATTCCCAAACGAAGACGGAGAAAGGTCTAAAAAATGTGAAACCAAATATACTGAAGAAGCTCTTGTTATACAGGATCTTCCATCGGCCGAAGCAAACCAAATTGCCAACAATCTCTCTAACCTCGGTCAAATCTATAACAGAGAAGACTCCTCAACAGATGTCTTGGTAAGGACATAAACAACTTCATCTCATATGAATACACACAACAATAAATACTACAAGTGAGATATCTAACTTGTTTCATTTAATTATTTATCACACGACAAAGGCAAGGGGTCAAGTTTTGGGAGATGGAATTCGCGTGCACAGTTTGGTTTTACCAGGGCTTCCCTCTAGTACAACAGTTCACTTTTCTGGTCTTGGAGAGGCATGTCCTTGGTGAACACATTTTATTCTACATGTCAATAACCAACTTACTCACAAAAATATAAAAATGACTCGTAAAATTGAAAATCATTGATTTACTTTAGTCTTTCTGCGACAATTTTCAAAACTAAATTAACTGATTCAAAAGAAAGACTAATTTAAATGAAGATTTTTTATTTCACTACTTTTAAAATTTAGTCAATTTAAGGAACCAAAGTGTACTATCTTCTCATTATGAGGTCAATTTCTGCAGATTTACACCATCAAGCATGATATCACAGATGTACAATGTCTTATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGGTACCTCAACTATTTTAAGTCTAAGCTTTTATAGTTTCTTTTAGATCATTCTGTTTGGTCTGATTCAATCTTTTTGTTTCCCCTTCATTTTTGAAGAACTTGGTATACGGCTTGGAGAAGTTTTTGTGA

Protein sequence

>MS.gene49050.t1

MAALSCQFHSINYLNSQMVKSRSNHSIISCTAQPIQSNIKVVINGAAKEVGRAAVLAVTKARGMEVAGAIDTQHVGEDIGQLCGMEEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPSAVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAISASFHYRNVEIVESKANANDLPSAEANQIANNLSNLGQIYNREDSSTDVLARGQVLGDGIRVHSLVLPGLPSSTTVHFSGLGEIYTIKHDITDVQCLMPGLLLAIRKVVRLKNLVYGLEKFL