AlfalfaGEDB | MsG0180004620.01

M. sativa cultivar ZhongmuNo.1 / MsG0180004620.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048874.01	MsG0180004620.01	0.802567	5.275894e-49	2.592825e-46
MsG0180000091.01	MsG0180004620.01	0.820511	6.597775e-53	5.230886e-50
MsG0180000145.01	MsG0180004620.01	0.805175	1.515332e-49	7.963036e-47
MsG0180000470.01	MsG0180004620.01	0.839137	1.897140e-57	2.595643e-54
MsG0180000702.01	MsG0180004620.01	0.812120	4.974706e-51	3.135896e-48
MsG0180001063.01	MsG0180004620.01	0.819233	1.293271e-52	9.895396e-50
MsG0180001892.01	MsG0180004620.01	0.828084	1.094108e-54	1.076382e-51
MsG0180002071.01	MsG0180004620.01	0.809526	1.811921e-50	1.066314e-47
MsG0180002282.01	MsG0180004620.01	0.806627	7.504204e-50	4.092543e-47
MsG0180002377.01	MsG0180004620.01	0.801073	1.069217e-48	5.059635e-46
MsG0180002952.01	MsG0180004620.01	0.812648	3.815129e-51	2.439139e-48
MsG0180003193.01	MsG0180004620.01	0.805313	1.417897e-49	7.477349e-47
MsG0180003673.01	MsG0180004620.01	0.819713	1.004977e-52	7.793338e-50
MsG0180003686.01	MsG0180004620.01	0.827790	1.287456e-54	1.255630e-51
MsG0180003797.01	MsG0180004620.01	0.802319	5.936265e-49	2.899268e-46
MsG0180004275.01	MsG0180004620.01	0.815656	8.267195e-52	5.734223e-49
MsG0180004389.01	MsG0180004620.01	0.801472	8.862294e-49	4.235903e-46
MsG0180004465.01	MsG0180004620.01	0.827465	1.541117e-54	1.489045e-51
MsG0180004620.01	MsG0180004765.01	0.828087	1.092313e-54	1.074716e-51
MsG0180004620.01	MsG0180004926.01	0.801369	9.299798e-49	4.433670e-46
MsG0180004620.01	MsG0180005185.01	0.824272	8.829658e-54	7.783452e-51
MsG0180004620.01	MsG0180005445.01	0.822753	2.001410e-53	1.690352e-50
MsG0180004620.01	MsG0180005730.01	0.835159	1.973740e-56	2.393414e-53
MsG0180004620.01	MsG0180005732.01	0.807835	4.163760e-50	2.343168e-47
MsG0180004620.01	MsG0180006096.01	0.811129	8.169435e-51	5.015924e-48
MsG0180004620.01	MsG0180006134.01	0.829794	4.216193e-55	4.360979e-52
MsG0180004620.01	MsG0280006491.01	0.811114	8.231425e-51	5.051895e-48
MsG0180004620.01	MsG0280006769.01	0.810931	9.018114e-51	5.508515e-48
MsG0180004620.01	MsG0280006770.01	0.802065	6.695781e-49	3.248866e-46
MsG0180004620.01	MsG0280007072.01	0.810465	1.137489e-50	6.861451e-48
MsG0180004620.01	MsG0280007955.01	0.826676	2.380318e-54	2.247511e-51
MsG0180004620.01	MsG0280008113.01	0.811885	5.596376e-51	3.505285e-48
MsG0180004620.01	MsG0280008615.01	0.804824	1.794646e-49	9.346470e-47
MsG0180004620.01	MsG0280009421.01	0.835026	2.131858e-56	2.574796e-53
MsG0180004620.01	MsG0280009533.01	0.808672	2.760753e-50	1.588145e-47
MsG0180004620.01	MsG0280010184.01	0.826147	3.181952e-54	2.959456e-51
MsG0180004620.01	MsG0280010349.01	0.832011	1.205504e-55	1.330612e-52
MsG0180004620.01	MsG0280010350.01	0.818434	1.964391e-52	1.470377e-49
MsG0180004620.01	MsG0280010366.01	0.803086	4.123236e-49	2.053255e-46
MsG0180004620.01	MsG0280010443.01	0.801517	8.673788e-49	4.150642e-46
MsG0180004620.01	MsG0280010598.01	0.800378	1.482595e-48	6.893018e-46
MsG0180004620.01	MsG0280010599.01	0.811862	5.662735e-51	3.544694e-48
MsG0180004620.01	MsG0280010722.01	0.814714	1.338811e-51	9.050365e-49
MsG0180004620.01	MsG0280011032.01	0.802774	4.782723e-49	2.363055e-46
MsG0180004620.01	MsG0280011101.01	0.800572	1.353517e-48	6.323763e-46
MsG0180004620.01	MsG0280011109.01	0.804273	2.338071e-49	1.200401e-46
MsG0180004620.01	MsG0380012034.01	0.801499	8.748071e-49	4.184321e-46
MsG0180004620.01	MsG0380012067.01	0.803546	3.310495e-49	1.668311e-46
MsG0180004620.01	MsG0380012460.01	0.802318	5.939842e-49	2.900924e-46
MsG0180004620.01	MsG0380013176.01	0.832544	8.900457e-56	9.979607e-53
MsG0180004620.01	MsG0380014097.01	0.801137	1.037771e-48	4.918715e-46
MsG0180004620.01	MsG0380014537.01	0.813469	2.520259e-51	1.647284e-48
MsG0180004620.01	MsG0380014573.01	0.809923	1.488124e-50	8.850236e-48
MsG0180004620.01	MsG0380014948.01	0.807519	4.857560e-50	2.711364e-47
MsG0180004620.01	MsG0380015039.01	0.820730	5.877578e-53	4.688289e-50
MsG0180004620.01	MsG0380015332.01	0.824473	7.920135e-54	7.022050e-51
MsG0180004620.01	MsG0380015555.01	0.812730	3.659629e-51	2.344877e-48
MsG0180004620.01	MsG0380015589.01	0.802011	6.867079e-49	3.327429e-46
MsG0180004620.01	MsG0380016517.01	0.828821	7.264706e-55	7.301460e-52
MsG0180004620.01	MsG0380016694.01	0.803909	2.784029e-49	1.416142e-46
MsG0180004620.01	MsG0380016910.01	0.804588	2.009924e-49	1.040336e-46
MsG0180004620.01	MsG0380017244.01	0.803926	2.760695e-49	1.404934e-46
MsG0180004620.01	MsG0380017461.01	0.808402	3.152835e-50	1.801056e-47
MsG0180004620.01	MsG0380017543.01	0.816494	5.373707e-52	3.813303e-49
MsG0180004620.01	MsG0380018075.01	0.804405	2.194471e-49	1.130485e-46
MsG0180004620.01	MsG0480018163.01	0.810025	1.414991e-50	8.438055e-48
MsG0180004620.01	MsG0480018183.01	0.812756	3.611785e-51	2.315720e-48
MsG0180004620.01	MsG0480018236.01	0.811138	8.132792e-51	4.994634e-48
MsG0180004620.01	MsG0480018251.01	0.856514	3.056906e-62	7.315718e-59
MsG0180004620.01	MsG0480018465.01	0.814584	1.430262e-51	9.634858e-49
MsG0180004620.01	MsG0480018653.01	0.807803	4.229494e-50	2.378223e-47
MsG0180004620.01	MsG0480018778.01	0.802305	5.975732e-49	2.917479e-46
MsG0180004620.01	MsG0480018883.01	0.801233	9.918385e-49	4.712345e-46
MsG0180004620.01	MsG0480020836.01	0.809796	1.584811e-50	9.394132e-48
MsG0180004620.01	MsG0480021280.01	0.800879	1.171353e-48	5.515819e-46
MsG0180004620.01	MsG0480021501.01	0.801137	1.037425e-48	4.917191e-46
MsG0180004620.01	MsG0480021534.01	0.804129	2.504632e-49	1.281185e-46
MsG0180004620.01	MsG0480021918.01	0.828272	9.858294e-55	9.751254e-52
MsG0180004620.01	MsG0480021925.01	0.813304	2.738535e-51	1.781877e-48
MsG0180004620.01	MsG0480022068.01	0.809464	1.867615e-50	1.097302e-47
MsG0180004620.01	MsG0480022262.01	0.810728	9.979514e-51	6.062439e-48
MsG0180004620.01	MsG0480022855.01	0.803677	3.109833e-49	1.572336e-46
MsG0180004620.01	MsG0480022985.01	0.818170	2.254068e-52	1.674808e-49
MsG0180004620.01	MsG0480023045.01	0.807641	4.577863e-50	2.563210e-47
MsG0180004620.01	MsG0480023354.01	0.820464	6.764662e-53	5.356614e-50
MsG0180004620.01	MsG0480023463.01	0.804343	2.261010e-49	1.162939e-46
MsG0180004620.01	MsG0480023488.01	0.831033	2.099279e-55	2.250780e-52
MsG0180004620.01	MsG0480023489.01	0.805789	1.126572e-49	6.014337e-47
MsG0180004620.01	MsG0480023638.01	0.801475	8.847422e-49	4.229206e-46
MsG0180004620.01	MsG0580024038.01	0.822899	1.850758e-53	1.569504e-50
MsG0180004620.01	MsG0580024781.01	0.803354	3.627854e-49	1.819078e-46
MsG0180004620.01	MsG0580025022.01	0.805164	1.523551e-49	8.003834e-47
MsG0180004620.01	MsG0580025723.01	0.820999	5.096640e-53	4.096592e-50
MsG0180004620.01	MsG0580025758.01	0.813332	2.700091e-51	1.758225e-48
MsG0180004620.01	MsG0580026086.01	0.809775	1.601870e-50	9.490056e-48
MsG0180004620.01	MsG0580027922.01	0.815286	9.991409e-52	6.860047e-49
MsG0180004620.01	MsG0580027947.01	0.806779	6.969350e-50	3.815916e-47
MsG0180004620.01	MsG0680030616.01	0.813429	2.571578e-51	1.678930e-48
MsG0180004620.01	MsG0680030880.01	0.831786	1.369878e-55	1.502233e-52
MsG0180004620.01	MsG0680031505.01	0.802649	5.076546e-49	2.500062e-46
MsG0180004620.01	MsG0680032157.01	0.828321	9.593644e-55	9.502820e-52
MsG0180004620.01	MsG0680033412.01	0.806288	8.848916e-50	4.784594e-47
MsG0180004620.01	MsG0680034739.01	0.804581	2.017216e-49	1.043913e-46
MsG0180004620.01	MsG0680034918.01	0.814519	1.478275e-51	9.941352e-49
MsG0180004620.01	MsG0680035005.01	0.804623	1.976468e-49	1.023917e-46
MsG0180004620.01	MsG0680035040.01	0.813118	3.009271e-51	1.947983e-48
MsG0180004620.01	MsG0680035580.01	0.805757	1.144333e-49	6.104336e-47
MsG0180004620.01	MsG0780036018.01	0.838094	3.527316e-57	4.674854e-54
MsG0180004620.01	MsG0780036080.01	0.812025	5.217590e-51	3.280492e-48
MsG0180004620.01	MsG0780036201.01	0.812430	4.256367e-51	2.705863e-48
MsG0180004620.01	MsG0780036602.01	0.805601	1.233808e-49	6.554713e-47
MsG0180004620.01	MsG0780037292.01	0.808662	2.774207e-50	1.595440e-47
MsG0180004620.01	MsG0780038401.01	0.825172	5.418999e-54	4.902364e-51
MsG0180004620.01	MsG0780038439.01	0.837293	5.662590e-57	7.322374e-54
MsG0180004620.01	MsG0780038691.01	0.800683	1.284906e-48	6.020019e-46
MsG0180004620.01	MsG0780038907.01	0.815949	7.112159e-52	4.972485e-49
MsG0180004620.01	MsG0780039178.01	0.809852	1.541898e-50	9.152665e-48
MsG0180004620.01	MsG0780039443.01	0.839542	1.489397e-57	2.063165e-54
MsG0180004620.01	MsG0780039832.01	0.828372	9.323765e-55	9.249958e-52
MsG0180004620.01	MsG0780040074.01	0.813717	2.221826e-51	1.462029e-48
MsG0180004620.01	MsG0780040669.01	0.809179	2.150547e-50	1.253966e-47
MsG0180004620.01	MsG0780040704.01	0.814705	1.344898e-51	9.089298e-49
MsG0180004620.01	MsG0780041229.01	0.814782	1.292761e-51	8.755098e-49
MsG0180004620.01	MsG0780041305.01	0.808179	3.517266e-50	1.997534e-47
MsG0180004620.01	MsG0780041416.01	0.806547	7.800187e-50	4.245639e-47
MsG0180004620.01	MsG0880042161.01	0.810354	1.201736e-50	7.227813e-48
MsG0180004620.01	MsG0880042434.01	0.801607	8.314451e-49	3.987500e-46
MsG0180004620.01	MsG0880042520.01	0.814910	1.210791e-51	8.228138e-49
MsG0180004620.01	MsG0880042700.01	0.811044	8.524852e-51	5.222570e-48
MsG0180004620.01	MsG0880043454.01	0.811818	5.788537e-51	3.619230e-48
MsG0180004620.01	MsG0880043521.01	0.803068	4.157374e-49	2.069312e-46
MsG0180004620.01	MsG0880043941.01	0.829542	4.856146e-55	4.984986e-52
MsG0180004620.01	MsG0880044573.01	0.825084	5.682596e-54	5.128049e-51
MsG0180004620.01	MsG0880044574.01	0.805288	1.434746e-49	7.561448e-47
MsG0180004620.01	MsG0880045111.01	0.817600	3.031275e-52	2.217306e-49
MsG0180004620.01	MsG0880045362.01	0.805861	1.087920e-49	5.818889e-47
MsG0180004620.01	MsG0880045371.01	0.804720	1.886260e-49	9.797377e-47
MsG0180004620.01	MsG0880045372.01	0.828494	8.712642e-55	8.674535e-52
MsG0180004620.01	MsG0880045736.01	0.824742	6.843703e-54	6.115941e-51
MsG0180004620.01	MsG0880046020.01	0.831206	1.903815e-55	2.051704e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 13 sgRNAs with CRISPR-Local

Find 15 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTCCTTTCTTGCCTCTTT+TGG	0.160489	1:-80414322	None:intergenic
TCTGGCACTGTTAATGTTGA+TGG	0.353049	1:+80414273	MsG0180004620.01.T01:CDS
TTCATCCATGTTCAATGGAT+TGG	0.389835	1:+80414147	MsG0180004620.01.T01:CDS
TTCTCCAAAAGAGGCAAGAA+AGG	0.392141	1:+80414318	MsG0180004620.01.T01:CDS
AAAGGAAGCACTAAATATAG+TGG	0.436790	1:+80414190	MsG0180004620.01.T01:CDS
CCCACACTAAGCAACAATCT+TGG	0.441948	1:-80414347	None:intergenic
CACTCCCTTATCAATAGCTC+TGG	0.468896	1:+80414255	MsG0180004620.01.T01:CDS
CAGTGCCAGAGCTATTGATA+AGG	0.477915	1:-80414260	None:intergenic
GAGAGAAGCTGCTGAAGCAT+TGG	0.524056	1:+80414213	MsG0180004620.01.T01:CDS
AGTGCCAGAGCTATTGATAA+GGG	0.543600	1:-80414259	None:intergenic
CTTTGCCAATCCATTGAACA+TGG	0.552225	1:-80414152	None:intergenic
AAGTCATTGAAAATGAAGAA+AGG	0.566697	1:+80414172	MsG0180004620.01.T01:CDS
AAGGAAGCACTAAATATAGT+GGG	0.587134	1:+80414191	MsG0180004620.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAGTCATTGAAAATGAAGAA+AGG	+	Chr1:80414172-80414191	MsG0180004620.01.T01:CDS	25.0%
!	CATTTTTCATCCATGTTCAA+TGG	+	Chr1:80414142-80414161	MsG0180004620.01.T01:CDS	30.0%
!!	AAAGGAAGCACTAAATATAG+TGG	+	Chr1:80414190-80414209	MsG0180004620.01.T01:CDS	30.0%
!!	AAGGAAGCACTAAATATAGT+GGG	+	Chr1:80414191-80414210	MsG0180004620.01.T01:CDS	30.0%
	TTCATCCATGTTCAATGGAT+TGG	+	Chr1:80414147-80414166	MsG0180004620.01.T01:CDS	35.0%
	AGTGCCAGAGCTATTGATAA+GGG	-	Chr1:80414262-80414281	None:intergenic	40.0%
	CTTTGCCAATCCATTGAACA+TGG	-	Chr1:80414155-80414174	None:intergenic	40.0%
	TCTGGCACTGTTAATGTTGA+TGG	+	Chr1:80414273-80414292	MsG0180004620.01.T01:CDS	40.0%
	TTCTCCAAAAGAGGCAAGAA+AGG	+	Chr1:80414318-80414337	MsG0180004620.01.T01:CDS	40.0%
!	AACTCCTTTCTTGCCTCTTT+TGG	-	Chr1:80414325-80414344	None:intergenic	40.0%
	CACTCCCTTATCAATAGCTC+TGG	+	Chr1:80414255-80414274	MsG0180004620.01.T01:CDS	45.0%
	CAGTGCCAGAGCTATTGATA+AGG	-	Chr1:80414263-80414282	None:intergenic	45.0%
!	GCCTCAGTTTTCTCCAAAAG+AGG	+	Chr1:80414309-80414328	MsG0180004620.01.T01:CDS	45.0%
!!	GCCTCTTTTGGAGAAAACTG+AGG	-	Chr1:80414313-80414332	None:intergenic	45.0%
	GAGAGAAGCTGCTGAAGCAT+TGG	+	Chr1:80414213-80414232	MsG0180004620.01.T01:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	80414136	80414363	80414136	ID=MsG0180004620.01;Name=MsG0180004620.01
Chr1	mRNA	80414136	80414363	80414136	ID=MsG0180004620.01.T01;Parent=MsG0180004620.01;Name=MsG0180004620.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|75
Chr1	exon	80414136	80414363	80414136	ID=MsG0180004620.01.T01:exon:13324;Parent=MsG0180004620.01.T01
Chr1	CDS	80414136	80414363	80414136	ID=MsG0180004620.01.T01:cds;Parent=MsG0180004620.01.T01

Gene Sequence	>MsG0180004620.01.T01 ATGGGTCATTTTTCATCCATGTTCAATGGATTGGCAAAGTCATTGAAAATGAAGAAAGGAAGCACTAAATATAGTGGGAGAGAAGCTGCTGAAGCATTGGCAAAAGAAGCAAAAGAAATCACTCCCTTATCAATAGCTCTGGCACTGTTAATGTTGATGGTTCAAACAACTTTGCCTCAGTTTTCTCCAAAAGAGGCAAGAAAGGAGTTAACCAAGATTGTTGCTTAG
Protein sequence	>MsG0180004620.01.T01 MGHFSSMFNGLAKSLKMKKGSTKYSGREAAEALAKEAKEITPLSIALALLMLMVQTTLPQFSPKEARKELTKIVA*