AlfalfaGEDB | MsG0180003797.01

M. sativa cultivar ZhongmuNo.1 / MsG0180003797.01

KEGG: K21843
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0180003797.01.T01	XP_013468448.1	92.348	379	29	0	1	379	1	379	722
MsG0180003797.01.T02	XP_013468448.1	92.348	379	29	0	1	379	1	379	722
MsG0180003797.01.T03	XP_013468448.1	94.408	304	9	1	1	296	410	713	588

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003797.01.T01	Q66GN3	60.158	379	146	1	1	374	25	403	1.51E-143	427
MsG0180003797.01.T02	Q66GN3	60.158	379	146	1	1	374	25	403	1.51E-143	427
MsG0180003797.01.T03	Q66GN3	57.049	305	118	3	1	296	439	739	9.08E-105	324

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0180003797.01.T01	A0A072VWM1	92.348	379	29	0	1	379	1	379	722
MsG0180003797.01.T02	A0A072VWM1	92.348	379	29	0	1	379	1	379	722
MsG0180003797.01.T03	A0A072VWM1	94.408	304	9	1	1	296	410	713	588

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047797.01	MsG0180003797.01	0.806931	6.471265e-50	3.557247e-47
MsG0080048404.01	MsG0180003797.01	0.831391	1.713864e-55	1.857298e-52
MsG0080048461.01	MsG0180003797.01	0.804034	2.622391e-49	1.338168e-46
MsG0080048618.01	MsG0180003797.01	0.811847	5.703887e-51	3.569047e-48
MsG0080048856.01	MsG0180003797.01	0.812550	4.007306e-51	2.555516e-48
MsG0080048874.01	MsG0180003797.01	0.808038	3.769383e-50	2.132588e-47
MsG0180000065.01	MsG0180003797.01	0.821153	4.696538e-53	3.790814e-50
MsG0180000091.01	MsG0180003797.01	0.839668	1.380555e-57	1.919923e-54
MsG0180000145.01	MsG0180003797.01	0.832112	1.138372e-55	1.260070e-52
MsG0180000295.01	MsG0180003797.01	0.811599	6.458775e-51	4.014828e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003797.01.T01	MTR_1g069630	92.348	379	29	0	1	379	1	379	0.0	722
MsG0180003797.01.T01	MTR_7g097230	67.109	377	121	2	1	374	16	392	1.07e-174	499
MsG0180003797.01.T01	MTR_7g097230	67.109	377	121	2	1	374	16	392	3.64e-172	498
MsG0180003797.01.T01	MTR_1g075480	57.963	383	149	5	1	378	22	397	4.54e-135	400
MsG0180003797.01.T01	MTR_1g075480	57.963	383	149	5	1	378	22	397	4.48e-134	400
MsG0180003797.01.T01	MTR_1g075480	57.963	383	149	5	1	378	35	410	8.67e-134	400
MsG0180003797.01.T01	MTR_1g075480	57.963	383	149	5	1	378	35	410	9.20e-134	400
MsG0180003797.01.T01	MTR_5g026810	51.045	335	163	1	40	374	26	359	4.94e-110	337
MsG0180003797.01.T01	MTR_8g071330	48.457	324	166	1	29	352	9	331	2.10e-99	310
MsG0180003797.01.T01	MTR_1g018040	47.895	380	187	8	6	379	6	380	1.42e-98	308

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003797.01.T01	AT4G28600	60.158	379	146	1	1	374	25	403	1.45e-144	428
MsG0180003797.01.T01	AT4G28600	60.158	379	146	1	1	374	25	403	1.54e-144	427
MsG0180003797.01.T01	AT4G28600	60.158	379	146	1	1	374	25	403	1.54e-144	427
MsG0180003797.01.T01	AT1G27460	47.139	367	173	6	6	366	6	357	1.28e-97	301
MsG0180003797.01.T01	AT1G27460	47.139	367	173	6	6	366	6	357	5.40e-96	301
MsG0180003797.01.T01	AT1G27460	47.139	367	173	6	6	366	6	357	6.05e-96	301
MsG0180003797.01.T01	AT2G43040	52.077	313	149	1	40	352	32	343	8.64e-94	295
MsG0180003797.01.T01	AT2G43040	52.077	313	149	1	40	352	32	343	8.64e-94	295
MsG0180003797.01.T02	AT4G28600	60.158	379	146	1	1	374	25	403	1.45e-144	428
MsG0180003797.01.T02	AT4G28600	60.158	379	146	1	1	374	25	403	1.54e-144	427

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Find 71 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGAGGTAATTCAGCT+GGG	0.593382	1:+68292084	None:intergenic
AAAGTATGACATAGGAGAAG+AGG	0.577520	1:-68291880	MsG0180003797.01.T01:five_prime_UTR
AACGCTGCTTTGGATCAGAC+TGG	0.514212	1:-68289575	MsG0180003797.01.T01:three_prime_UTR
AAGCTGAGTGTACGTCTCAA+TGG	0.530685	1:+68289481	None:intergenic
AAGGATGGTTACTGTTGGCA+CGG	0.592491	1:-68289643	MsG0180003797.01.T01:three_prime_UTR
AAGTGCGTCATAAAACTGGA+AGG	0.625420	1:-68289680	MsG0180003797.01.T01:three_prime_UTR
AAGTGGCGTGTTAAACTACG+AGG	0.762852	1:-68291659	MsG0180003797.01.T01:intron
AATGAAGTTCCTACGCTCAG+GGG	0.692085	1:-68291836	MsG0180003797.01.T01:CDS
ACAATGAAGTTCCTACGCTC+AGG	0.478204	1:-68291838	MsG0180003797.01.T01:CDS
ACGCTGCTTTGGATCAGACT+GGG	0.611127	1:-68289574	MsG0180003797.01.T01:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATAGAGGTAATTCAGC+TGG	+	Chr1:68288574-68288593	None:intergenic	30.0%
AAAATAGAGGTAATTCAGCT+GGG	+	Chr1:68288573-68288592	None:intergenic	30.0%
AAAATATGCATGCAATCTAC+AGG	-	Chr1:68289409-68289428	MsG0180003797.01.T01:intron	30.0%
AAGAAACATTCCCATAATCA+TGG	-	Chr1:68289569-68289588	MsG0180003797.01.T01:three_prime_UTR	30.0%
AATAAGCTGTTTATCCAAAC+AGG	+	Chr1:68289119-68289138	None:intergenic	30.0%
AATAATTGGCTAAACTCGAT+AGG	+	Chr1:68290487-68290506	None:intergenic	30.0%
AATTACAAAGAGCTAGATCA+TGG	+	Chr1:68290553-68290572	None:intergenic	30.0%
AATTGTTGAGTGATAGAGAA+AGG	-	Chr1:68290615-68290634	MsG0180003797.01.T01:CDS	30.0%
ACAGAATGTATAGACATTTC+CGG	+	Chr1:68289599-68289618	None:intergenic	30.0%
ATCGAGTTTAGCCAATTATT+TGG	-	Chr1:68290487-68290506	MsG0180003797.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	68288318	68292358	68288318	ID=MsG0180003797.01;Name=MsG0180003797.01
Chr1	mRNA	68288318	68292183	68288318	ID=MsG0180003797.01.T01;Parent=MsG0180003797.01;Name=MsG0180003797.01.T01;_AED=0.48;_eAED=0.48;_QI=101\|1\|1\|1\|0.6\|0.5\|6\|1257\|381
Chr1	exon	68291660	68291924	68291660	ID=MsG0180003797.01.T01:exon:5874;Parent=MsG0180003797.01.T01
Chr1	exon	68292150	68292183	68292150	ID=MsG0180003797.01.T01:exon:5873;Parent=MsG0180003797.01.T01
Chr1	five_prime_UTR	68292150	68292183	68292150	ID=MsG0180003797.01.T01:five_prime_utr;Parent=MsG0180003797.01.T01
Chr1	five_prime_UTR	68291858	68291924	68291858	ID=MsG0180003797.01.T01:five_prime_utr;Parent=MsG0180003797.01.T01
Chr1	CDS	68291660	68291857	68291660	ID=MsG0180003797.01.T01:cds;Parent=MsG0180003797.01.T01
Chr1	CDS	68290993	68291245	68290993	ID=MsG0180003797.01.T01:cds;Parent=MsG0180003797.01.T01
Chr1	CDS	68289943	68290637	68289943	ID=MsG0180003797.01.T01:cds;Parent=MsG0180003797.01.T01
Chr1	three_prime_UTR	68289425	68289942	68289425	ID=MsG0180003797.01.T01:three_prime_utr;Parent=MsG0180003797.01.T01
Chr1	three_prime_UTR	68289090	68289243	68289090	ID=MsG0180003797.01.T01:three_prime_utr;Parent=MsG0180003797.01.T01
Chr1	three_prime_UTR	68288318	68288902	68288318	ID=MsG0180003797.01.T01:three_prime_utr;Parent=MsG0180003797.01.T01
Chr1	mRNA	68288318	68292358	68288318	ID=MsG0180003797.01.T02;Parent=MsG0180003797.01;Name=MsG0180003797.01.T02;_AED=0.48;_eAED=0.48;_QI=501\|1\|1\|1\|0.75\|0.8\|5\|1257\|381
Chr1	exon	68291660	68292358	68291660	ID=MsG0180003797.01.T02:exon:5879;Parent=MsG0180003797.01.T02
Chr1	five_prime_UTR	68291858	68292358	68291858	ID=MsG0180003797.01.T02:five_prime_utr;Parent=MsG0180003797.01.T02
Chr1	CDS	68291660	68291857	68291660	ID=MsG0180003797.01.T02:cds;Parent=MsG0180003797.01.T02
Chr1	CDS	68290993	68291245	68290993	ID=MsG0180003797.01.T02:cds;Parent=MsG0180003797.01.T02
Chr1	CDS	68289943	68290637	68289943	ID=MsG0180003797.01.T02:cds;Parent=MsG0180003797.01.T02
Chr1	three_prime_UTR	68289425	68289942	68289425	ID=MsG0180003797.01.T02:three_prime_utr;Parent=MsG0180003797.01.T02
Chr1	three_prime_UTR	68289090	68289243	68289090	ID=MsG0180003797.01.T02:three_prime_utr;Parent=MsG0180003797.01.T02
Chr1	three_prime_UTR	68288318	68288902	68288318	ID=MsG0180003797.01.T02:three_prime_utr;Parent=MsG0180003797.01.T02
Chr1	mRNA	68288318	68289864	68288318	ID=MsG0180003797.01.T03;Parent=MsG0180003797.01;Name=MsG0180003797.01.T03;_AED=0.49;_eAED=0.49;_QI=0\|0.5\|0.66\|1\|1\|1\|3\|265\|296
Chr1	exon	68289448	68289864	68289448	ID=MsG0180003797.01.T03:exon:5880;Parent=MsG0180003797.01.T03
Chr1	CDS	68289448	68289864	68289448	ID=MsG0180003797.01.T03:cds;Parent=MsG0180003797.01.T03
Chr1	CDS	68289090	68289243	68289090	ID=MsG0180003797.01.T03:cds;Parent=MsG0180003797.01.T03
Chr1	CDS	68288583	68288902	68288583	ID=MsG0180003797.01.T03:cds;Parent=MsG0180003797.01.T03
Chr1	three_prime_UTR	68288318	68288582	68288318	ID=MsG0180003797.01.T03:three_prime_utr;Parent=MsG0180003797.01.T03

Gene Sequence

>MsG0180003797.01.T02

ATGAAGTTCCTACGCTCAGGGGAGCAATTGGGAGGAACATATGAAACACAACCTTCATCCGAATCTCTTGTCACCAGGGACTTCTTTTCAGGAAGTGATCATTCTTTCCCACCTGGAAAACTTGATCACAAGTTGGACACCGGTAATATAGAAGAAGCAGAATTATCTCTGCGAGAAAGTGGCGTGTTAAACTACGAGGAAGCTAGAGCATTACTAGGAAGATACGAGTATCAAAAAGGAAATTTAGTAGCTGCATTACACGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAACAAAGAACGCCGCAAGAAACATTCCCATAATCATGGTGAACCGGAAATGTCTATACATTCTGTGGGCTTACTGTTTGAAGCACTCTTTCTAAAAGCAAAATCGTTGCAGGCTCTTGAAAGGTTTAAAGAAGCTGCCCAATCTTGCAAAGTTATTATGGACATAGTGGAATCTTCATTGCCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCGTGAGCAAGGCAGTTGAGCTGCTTCCAGAATTGTGGAAGCTTGCTGATTGTCCTCGTGAAGCTACTTTGTCTTACCGGCGAGCACTTCTTCATAAATGGAATCTCGATCCAGGGACTGTAGCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGGGAAGTGATGCCCCCTAATCTACGTTCTCAAATGGACGGCTCGTTTGTTCCGGCAAACAACATAGAAGAGGCTATACTTCTTTTAATGATTTTGCTCAGAAAAGTCTCTCTCAATAGAATTGAATGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTGTCTGTTTCGGGAGACCTATCGAGTTTAGCCAATTATTTGGAAGAATTACTCCCTGGGACTATCCATCGAAGTGAAAGATTCCATGATCTAGCTCTTTGTAATTACGGAGCAGGTAAGGACTTGATGGCAATGGATCTTTTAAGAAAATTGTTGAGTGATAGAGAAAGGCCGGAACACGTTCCCGGTTTGTTAATGGCTTCTAAATTTGCTGCGAGAACCCTAGTCTTGCAGAAGAAGGGTAAGCTTTTCTCAGAGAGCACTTGA

>MsG0180003797.01.T01

>MsG0180003797.01.T03

ATGGCCATTTCTGATTTCGAGAAATTCAAGAGACAATCTGAGGCACTTCAAGCCTTGGAAACTGCTGGCAGAACGACCGGAATGAGAGACCCTTCAGTACTATACCATCTCAGTTTAGAATACGCTGAACAAAGGAAGTTAGACGATGCACTTTATTATGCAAAGTGCGTCATAAAACTGGAAGGTGGTTCCAATGTTAAAGGATGGTTACTGTTGGCACGGATATTATCTGCTCAAAAACAGTTTTTGGAGGCTGAATCTATTATCAACGCTGCTTTGGATCAGACTGGGAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAAATTCAAATTGCACTTGGACAGTTAAAGAACGCCATTGAGACGTACACTCAGCTTCTCGCTGTTCTTCAAATTCAGAGCAAAAGTTTGGGTAACCGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTCATGTGTACATCAGTCTTTCCCAGTGGCATGATGCAGAGGCGTGTCTTTCAAAATCTAAGGCAATCAAACCGTATTCTGCTTCTAGATGTCATGCACTCGGCGTAATGTATGAAGCAAAGGGCCTTTACAAAGAGGCTCTAAAAGCTTTTCGCGATGCTTTAGACATTGATCCTGGCCATGTCCGCAGCCTAATCTCCACTGCTGAAGTACTTAGACGCTGCAGTAATAAATCAAATCCTGCAGTCAGAACTTTTTTGACGGATGCTCTACGGCATGACAGATTGAATGCTTCTGCTTGGTATAATCTTGGCCTTTTTCACAAGGCTGAGGGTAAAATATCATCATTGGTCGAAGCTACAGAATGTTTTCAGGCAGCACACTCTCTTGAAGAATCTACTCCACTTGAACCTTTCAGATGA

Protein sequence

>MsG0180003797.01.T02

MKFLRSGEQLGGTYETQPSSESLVTRDFFSGSDHSFPPGKLDHKLDTGNIEEAELSLRESGVLNYEEARALLGRYEYQKGNLVAALHVFEGIDIGVVTPKIKIALSRNKERRKKHSHNHGEPEMSIHSVGLLFEALFLKAKSLQALERFKEAAQSCKVIMDIVESSLPEGLPDNFGAECKLQETVSKAVELLPELWKLADCPREATLSYRRALLHKWNLDPGTVAKIQKEFVVFLLYSGGEVMPPNLRSQMDGSFVPANNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSVSGDLSSLANYLEELLPGTIHRSERFHDLALCNYGAGKDLMAMDLLRKLLSDRERPEHVPGLLMASKFAARTLVLQKKGKLFSEST*

>MsG0180003797.01.T01

>MsG0180003797.01.T03

MAISDFEKFKRQSEALQALETAGRTTGMRDPSVLYHLSLEYAEQRKLDDALYYAKCVIKLEGGSNVKGWLLLARILSAQKQFLEAESIINAALDQTGKWDQGDLLRTKAKIQIALGQLKNAIETYTQLLAVLQIQSKSLGNRDRARNLEVEIWHDLAHVYISLSQWHDAEACLSKSKAIKPYSASRCHALGVMYEAKGLYKEALKAFRDALDIDPGHVRSLISTAEVLRRCSNKSNPAVRTFLTDALRHDRLNASAWYNLGLFHKAEGKISSLVEATECFQAAHSLEESTPLEPFR*