Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172890 | XP_003604118.1 | 97.516 | 322 | 8 | 0 | 1 | 322 | 1 | 322 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172890 | sp|I6YGS0|EPHA_MYCTU | 35.562 | 329 | 189 | 7 | 1 | 319 | 1 | 316 | 4.55e-67 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172890 | G7JUF4 | 97.516 | 322 | 8 | 0 | 1 | 322 | 1 | 322 | 0.0 | 653 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032770 | Msa0172890 | 0.983957 | 3.483056e-159 | -8.615850e-47 |
| Msa0036560 | Msa0172890 | -0.811263 | 7.639722e-51 | -8.615850e-47 |
| Msa0040210 | Msa0172890 | 0.819406 | 1.181197e-52 | -8.615850e-47 |
| Msa0059420 | Msa0172890 | 0.804556 | 2.041618e-49 | -8.615850e-47 |
| Msa0059880 | Msa0172890 | 0.844738 | 6.276652e-59 | -8.615850e-47 |
| Msa0064990 | Msa0172890 | 0.819377 | 1.199120e-52 | -8.615850e-47 |
| Msa0072030 | Msa0172890 | 0.807556 | 4.772365e-50 | -8.615850e-47 |
| Msa0074860 | Msa0172890 | -0.800442 | 1.438235e-48 | -8.615850e-47 |
| Msa0081700 | Msa0172890 | -0.813384 | 2.630275e-51 | -8.615850e-47 |
| Msa0099090 | Msa0172890 | -0.812140 | 4.924155e-51 | -8.615850e-47 |
| Msa0104090 | Msa0172890 | 0.801687 | 8.003884e-49 | -8.615850e-47 |
| Msa0114610 | Msa0172890 | 0.858070 | 1.060243e-62 | -8.615850e-47 |
| Msa0138340 | Msa0172890 | -0.814062 | 1.865743e-51 | -8.615850e-47 |
| Msa0139280 | Msa0172890 | -0.802804 | 4.714634e-49 | -8.615850e-47 |
| Msa0140270 | Msa0172890 | 0.823555 | 1.300696e-53 | -8.615850e-47 |
| Msa0147960 | Msa0172890 | -0.810219 | 1.284853e-50 | -8.615850e-47 |
| Msa0148000 | Msa0172890 | -0.806749 | 7.070617e-50 | -8.615850e-47 |
| Msa0150910 | Msa0172890 | 0.815270 | 1.007612e-51 | -8.615850e-47 |
| Msa0163340 | Msa0172890 | 0.805693 | 1.180351e-49 | -8.615850e-47 |
| Msa0172890 | Msa0189150 | -0.804251 | 2.362934e-49 | -8.615850e-47 |
| Msa0172890 | Msa0190670 | 0.814169 | 1.767014e-51 | -8.615850e-47 |
| Msa0172890 | Msa0190890 | 0.801301 | 9.603760e-49 | -8.615850e-47 |
| Msa0172890 | Msa0194750 | -0.815687 | 8.136822e-52 | -8.615850e-47 |
| Msa0172890 | Msa0210790 | 0.816747 | 4.716296e-52 | -8.615850e-47 |
| Msa0172890 | Msa0210850 | 0.821700 | 3.511550e-53 | -8.615850e-47 |
| Msa0172890 | Msa0214800 | 0.805346 | 1.395797e-49 | -8.615850e-47 |
| Msa0172890 | Msa0223590 | 0.806713 | 7.198539e-50 | -8.615850e-47 |
| Msa0172890 | Msa0225070 | -0.814740 | 1.320965e-51 | -8.615850e-47 |
| Msa0172890 | Msa0232170 | -0.804891 | 1.737929e-49 | -8.615850e-47 |
| Msa0172890 | Msa0233210 | 0.810378 | 1.187531e-50 | -8.615850e-47 |
| Msa0172890 | Msa0236690 | -0.829337 | 5.446567e-55 | -8.615850e-47 |
| Msa0172890 | Msa0264890 | 0.802181 | 6.335841e-49 | -8.615850e-47 |
| Msa0172890 | Msa0265060 | 0.800333 | 1.513735e-48 | -8.615850e-47 |
| Msa0172890 | Msa0266140 | -0.809470 | 1.862252e-50 | -8.615850e-47 |
| Msa0172890 | Msa0269660 | -0.831423 | 1.683065e-55 | -8.615850e-47 |
| Msa0172890 | Msa0270730 | -0.810758 | 9.827543e-51 | -8.615850e-47 |
| Msa0172890 | Msa0274250 | 0.805786 | 1.128319e-49 | -8.615850e-47 |
| Msa0172890 | Msa0274260 | 0.827982 | 1.157962e-54 | -8.615850e-47 |
| Msa0172890 | Msa0304060 | -0.817947 | 2.530910e-52 | -8.615850e-47 |
| Msa0172890 | Msa0310260 | -0.811401 | 7.132952e-51 | -8.615850e-47 |
| Msa0172890 | Msa0328870 | 0.803470 | 3.433936e-49 | -8.615850e-47 |
| Msa0172890 | Msa0349910 | 0.807791 | 4.254307e-50 | -8.615850e-47 |
| Msa0172890 | Msa0368620 | 0.814702 | 1.346423e-51 | -8.615850e-47 |
| Msa0172890 | Msa0375030 | 0.832738 | 7.964132e-56 | -8.615850e-47 |
| Msa0172890 | Msa0389710 | 0.809883 | 1.518126e-50 | -8.615850e-47 |
| Msa0172890 | Msa0414480 | 0.803923 | 2.765138e-49 | -8.615850e-47 |
| Msa0172890 | Msa0415010 | 0.806465 | 8.117477e-50 | -8.615850e-47 |
| Msa0172890 | Msa0416040 | 0.805261 | 1.454138e-49 | -8.615850e-47 |
| Msa0172890 | Msa0421080 | 0.803470 | 3.433936e-49 | -8.615850e-47 |
| Msa0172890 | Msa0423690 | 0.800250 | 1.574284e-48 | -8.615850e-47 |
| Msa0172890 | Msa0430320 | 0.805853 | 1.092389e-49 | -8.615850e-47 |
| Msa0172890 | Msa0430460 | 0.816830 | 4.517804e-52 | -8.615850e-47 |
| Msa0172890 | Msa0447360 | -0.805589 | 1.241231e-49 | -8.615850e-47 |
| Msa0172890 | Msa0470440 | 0.814126 | 1.805216e-51 | -8.615850e-47 |
| Msa0172890 | Msa0480260 | 0.809541 | 1.798113e-50 | -8.615850e-47 |
| Msa0172890 | Msa0508160 | 0.811333 | 7.379978e-51 | -8.615850e-47 |
| Msa0172890 | Msa0525460 | 0.800874 | 1.174481e-48 | -8.615850e-47 |
| Msa0172890 | Msa0527210 | -0.809176 | 2.153262e-50 | -8.615850e-47 |
| Msa0172890 | Msa0537210 | 0.805003 | 1.646561e-49 | -8.615850e-47 |
| Msa0172890 | Msa0538050 | -0.840447 | 8.649298e-58 | -8.615850e-47 |
| Msa0172890 | Msa0559440 | -0.804591 | 2.007400e-49 | -8.615850e-47 |
| Msa0172890 | Msa0559640 | -0.811277 | 7.588218e-51 | -8.615850e-47 |
| Msa0172890 | Msa0567190 | -0.801980 | 6.970694e-49 | -8.615850e-47 |
| Msa0172890 | Msa0567420 | -0.800798 | 1.217345e-48 | -8.615850e-47 |
| Msa0172890 | Msa0568300 | -0.806986 | 6.299935e-50 | -8.615850e-47 |
| Msa0172890 | Msa0580210 | 0.814867 | 1.238099e-51 | -8.615850e-47 |
| Msa0172890 | Msa0583270 | -0.804326 | 2.279867e-49 | -8.615850e-47 |
| Msa0172890 | Msa0585720 | -0.824796 | 6.647000e-54 | -8.615850e-47 |
| Msa0172890 | Msa0602050 | 0.804637 | 1.963488e-49 | -8.615850e-47 |
| Msa0172890 | Msa0625900 | -0.820245 | 7.595907e-53 | -8.615850e-47 |
| Msa0172890 | Msa0643190 | 0.809430 | 1.899634e-50 | -8.615850e-47 |
| Msa0172890 | Msa0663580 | -0.819147 | 1.353127e-52 | -8.615850e-47 |
| Msa0172890 | Msa0663690 | -0.819484 | 1.133732e-52 | -8.615850e-47 |
| Msa0172890 | Msa0670360 | 0.803434 | 3.493309e-49 | -8.615850e-47 |
| Msa0172890 | Msa0671640 | 0.804069 | 2.577774e-49 | -8.615850e-47 |
| Msa0172890 | Msa0678620 | 0.801153 | 1.029908e-48 | -8.615850e-47 |
| Msa0172890 | Msa0684560 | 0.800020 | 1.752757e-48 | -8.615850e-47 |
| Msa0172890 | Msa0698110 | 0.809418 | 1.910899e-50 | -8.615850e-47 |
| Msa0172890 | Msa0705520 | 0.819020 | 1.445935e-52 | -8.615850e-47 |
| Msa0172890 | Msa0727230 | 0.802943 | 4.413794e-49 | -8.615850e-47 |
| Msa0172890 | Msa0727480 | 0.824526 | 7.696185e-54 | -8.615850e-47 |
| Msa0172890 | Msa0742200 | 0.810415 | 1.165789e-50 | -8.615850e-47 |
| Msa0172890 | Msa0742690 | -0.825507 | 4.515480e-54 | -8.615850e-47 |
| Msa0172890 | Msa0753410 | 0.804461 | 2.136291e-49 | -8.615850e-47 |
| Msa0172890 | Msa0768670 | 0.822783 | 1.969501e-53 | -8.615850e-47 |
| Msa0172890 | Msa0768720 | 0.813185 | 2.908402e-51 | -8.615850e-47 |
| Msa0172890 | Msa0777070 | 0.821490 | 3.926588e-53 | -8.615850e-47 |
| Msa0172890 | Msa0779830 | -0.817086 | 3.957038e-52 | -8.615850e-47 |
| Msa0172890 | Msa0787860 | 0.802109 | 6.556286e-49 | -8.615850e-47 |
| Msa0172890 | Msa0814160 | 0.837986 | 3.759807e-57 | -8.615850e-47 |
| Msa0172890 | Msa0814230 | 0.803196 | 3.911600e-49 | -8.615850e-47 |
| Msa0172890 | Msa0823380 | 0.811215 | 7.826218e-51 | -8.615850e-47 |
| Msa0172890 | Msa0826370 | 0.810163 | 1.321065e-50 | -8.615850e-47 |
| Msa0172890 | Msa0827560 | -0.820399 | 7.002467e-53 | -8.615850e-47 |
| Msa0172890 | Msa0828350 | 0.813997 | 1.927714e-51 | -8.615850e-47 |
| Msa0172890 | Msa0842180 | 0.801810 | 7.551545e-49 | -8.615850e-47 |
| Msa0172890 | Msa0854840 | 0.830751 | 2.461219e-55 | -8.615850e-47 |
| Msa0172890 | Msa0861400 | -0.818690 | 1.718270e-52 | -8.615850e-47 |
| Msa0172890 | Msa0862750 | -0.810942 | 8.967573e-51 | -8.615850e-47 |
| Msa0172890 | Msa0864160 | 0.803162 | 3.975359e-49 | -8.615850e-47 |
| Msa0172890 | Msa0870220 | -0.806273 | 8.910375e-50 | -8.615850e-47 |
| Msa0172890 | Msa0883640 | 0.803145 | 4.007723e-49 | -8.615850e-47 |
| Msa0172890 | Msa0902340 | 0.800073 | 1.710184e-48 | -8.615850e-47 |
| Msa0172890 | Msa0903460 | -0.815898 | 7.302152e-52 | -8.615850e-47 |
| Msa0172890 | Msa0906100 | -0.812320 | 4.498139e-51 | -8.615850e-47 |
| Msa0172890 | Msa0906680 | 0.801912 | 7.199285e-49 | -8.615850e-47 |
| Msa0172890 | Msa0910830 | 0.820961 | 5.200559e-53 | -8.615850e-47 |
| Msa0172890 | Msa0913550 | 0.811406 | 7.113732e-51 | -8.615850e-47 |
| Msa0172890 | Msa0932050 | -0.814966 | 1.176834e-51 | -8.615850e-47 |
| Msa0172890 | Msa0933590 | 0.801616 | 8.279060e-49 | -8.615850e-47 |
| Msa0172890 | Msa0935930 | -0.813183 | 2.911618e-51 | -8.615850e-47 |
| Msa0172890 | Msa0938150 | -0.805918 | 1.058439e-49 | -8.615850e-47 |
| Msa0172890 | Msa0947420 | 0.805574 | 1.250230e-49 | -8.615850e-47 |
| Msa0172890 | Msa0960090 | 0.805599 | 1.234768e-49 | -8.615850e-47 |
| Msa0172890 | Msa0967900 | -0.821289 | 4.369070e-53 | -8.615850e-47 |
| Msa0172890 | Msa0985700 | 0.802237 | 6.170220e-49 | -8.615850e-47 |
| Msa0172890 | Msa1006170 | 0.823816 | 1.129896e-53 | -8.615850e-47 |
| Msa0172890 | Msa1018210 | -0.810985 | 8.779489e-51 | -8.615850e-47 |
| Msa0172890 | Msa1021620 | 0.815562 | 8.675043e-52 | -8.615850e-47 |
| Msa0172890 | Msa1024350 | 0.839075 | 1.967629e-57 | -8.615850e-47 |
| Msa0172890 | Msa1039150 | -0.802981 | 4.334621e-49 | -8.615850e-47 |
| Msa0172890 | Msa1041260 | 0.800487 | 1.408434e-48 | -8.615850e-47 |
| Msa0172890 | Msa1061670 | 0.815951 | 7.105382e-52 | -8.615850e-47 |
| Msa0172890 | Msa1061840 | 0.802356 | 5.832482e-49 | -8.615850e-47 |
| Msa0172890 | Msa1070630 | -0.801979 | 6.974482e-49 | -8.615850e-47 |
| Msa0172890 | Msa1084340 | -0.801068 | 1.071677e-48 | -8.615850e-47 |
| Msa0172890 | Msa1087370 | 0.804445 | 2.153433e-49 | -8.615850e-47 |
| Msa0172890 | Msa1087380 | 0.839306 | 1.714824e-57 | -8.615850e-47 |
| Msa0172890 | Msa1106960 | 0.804814 | 1.803340e-49 | -8.615850e-47 |
| Msa0172890 | Msa1107510 | 0.806373 | 8.491060e-50 | -8.615850e-47 |
| Msa0172890 | Msa1109880 | 0.802154 | 6.417974e-49 | -8.615850e-47 |
| Msa0172890 | Msa1109890 | 0.812606 | 3.894901e-51 | -8.615850e-47 |
| Msa0172890 | Msa1112230 | -0.801737 | 7.818507e-49 | -8.615850e-47 |
| Msa0172890 | Msa1165660 | 0.801226 | 9.950011e-49 | -8.615850e-47 |
| Msa0172890 | Msa1174280 | 0.800768 | 1.234452e-48 | -8.615850e-47 |
| Msa0172890 | Msa1179340 | 0.805391 | 1.365730e-49 | -8.615850e-47 |
| Msa0172890 | Msa1214960 | 0.805619 | 1.223305e-49 | -8.615850e-47 |
| Msa0172890 | Msa1228600 | -0.807938 | 3.957399e-50 | -8.615850e-47 |
| Msa0172890 | Msa1233090 | 0.812738 | 3.645740e-51 | -8.615850e-47 |
| Msa0172890 | Msa1256730 | 0.824223 | 9.066742e-54 | -8.615850e-47 |
| Msa0172890 | Msa1275220 | 0.814728 | 1.329200e-51 | -8.615850e-47 |
| Msa0172890 | Msa1298090 | 0.810683 | 1.020630e-50 | -8.615850e-47 |
| Msa0172890 | Msa1313720 | 0.824878 | 6.356105e-54 | -8.615850e-47 |
| Msa0172890 | Msa1314810 | 0.805935 | 1.049556e-49 | -8.615850e-47 |
| Msa0172890 | Msa1323030 | 0.823136 | 1.629600e-53 | -8.615850e-47 |
| Msa0172890 | Msa1323120 | 0.801704 | 7.941323e-49 | -8.615850e-47 |
| Msa0172890 | Msa1323260 | -0.805321 | 1.412245e-49 | -8.615850e-47 |
| Msa0172890 | Msa1327690 | -0.800892 | 1.164211e-48 | -8.615850e-47 |
| Msa0172890 | Msa1348860 | -0.809157 | 2.173750e-50 | -8.615850e-47 |
| Msa0172890 | Msa1349420 | 0.816776 | 4.644610e-52 | -8.615850e-47 |
| Msa0172890 | Msa1371060 | -0.800647 | 1.306677e-48 | -8.615850e-47 |
| Msa0172890 | Msa1371540 | -0.819523 | 1.110929e-52 | -8.615850e-47 |
| Msa0172890 | Msa1372470 | -0.813924 | 2.000505e-51 | -8.615850e-47 |
| Msa0172890 | Msa1373560 | 0.806733 | 7.127329e-50 | -8.615850e-47 |
| Msa0172890 | Msa1377980 | -0.804237 | 2.379057e-49 | -8.615850e-47 |
| Msa0172890 | Msa1381300 | -0.801972 | 6.994868e-49 | -8.615850e-47 |
| Msa0172890 | Msa1382100 | -0.831346 | 1.758485e-55 | -8.615850e-47 |
| Msa0172890 | Msa1384410 | -0.800909 | 1.155419e-48 | -8.615850e-47 |
| Msa0172890 | Msa1398110 | 0.801842 | 7.440323e-49 | -8.615850e-47 |
| Msa0172890 | Msa1408280 | -0.802211 | 6.247718e-49 | -8.615850e-47 |
| Msa0172890 | Msa1419700 | 0.808803 | 2.587651e-50 | -8.615850e-47 |
| Msa0172890 | Msa1434850 | -0.811935 | 5.457857e-51 | -8.615850e-47 |
| Msa0172890 | Msa1445900 | 0.804088 | 2.555281e-49 | -8.615850e-47 |
| Msa0172890 | Msa1449770 | 0.804266 | 2.346351e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172890 | MtrunA17_Chr4g0000111 | 97.516 | 322 | 8 | 0 | 1 | 322 | 1 | 322 | 0.0 | 653 |
| Msa0172890 | MtrunA17_Chr7g0272531 | 72.446 | 323 | 84 | 3 | 1 | 322 | 31 | 349 | 0.0 | 504 |
| Msa0172890 | MtrunA17_Chr7g0272501 | 72.755 | 323 | 83 | 3 | 1 | 322 | 1 | 319 | 0.0 | 503 |
| Msa0172890 | MtrunA17_Chr7g0272481 | 73.065 | 323 | 82 | 3 | 1 | 322 | 1 | 319 | 1.08e-180 | 501 |
| Msa0172890 | MtrunA17_Chr7g0272171 | 72.136 | 323 | 85 | 3 | 1 | 322 | 1 | 319 | 5.25e-179 | 497 |
| Msa0172890 | MtrunA17_Chr7g0272181 | 70.898 | 323 | 89 | 3 | 1 | 322 | 1 | 319 | 5.71e-177 | 492 |
| Msa0172890 | MtrunA17_Chr7g0272431 | 68.111 | 323 | 98 | 3 | 1 | 322 | 1 | 319 | 1.68e-166 | 466 |
| Msa0172890 | MtrunA17_Chr7g0272441 | 67.492 | 323 | 100 | 3 | 1 | 322 | 1 | 319 | 2.26e-163 | 457 |
| Msa0172890 | MtrunA17_Chr7g0272451 | 68.111 | 323 | 95 | 5 | 1 | 322 | 1 | 316 | 2.05e-162 | 455 |
| Msa0172890 | MtrunA17_Chr7g0269471 | 57.143 | 322 | 133 | 3 | 1 | 322 | 1 | 317 | 1.54e-133 | 382 |
| Msa0172890 | MtrunA17_Chr4g0067581 | 57.099 | 324 | 132 | 4 | 1 | 322 | 37 | 355 | 5.89e-133 | 382 |
| Msa0172890 | MtrunA17_Chr1g0192291 | 98.101 | 158 | 3 | 0 | 1 | 158 | 1 | 158 | 2.50e-115 | 330 |
| Msa0172890 | MtrunA17_Chr8g0372491 | 44.410 | 322 | 172 | 5 | 1 | 322 | 3 | 317 | 7.36e-94 | 281 |
| Msa0172890 | MtrunA17_Chr7g0272471 | 76.101 | 159 | 34 | 2 | 1 | 158 | 1 | 156 | 9.74e-86 | 255 |
| Msa0172890 | MtrunA17_Chr2g0324141 | 36.923 | 325 | 186 | 8 | 1 | 321 | 1 | 310 | 1.04e-62 | 201 |
| Msa0172890 | MtrunA17_Chr2g0324161 | 36.000 | 325 | 189 | 8 | 1 | 321 | 1 | 310 | 2.87e-61 | 197 |
| Msa0172890 | MtrunA17_Chr4g0047681 | 35.152 | 330 | 184 | 9 | 1 | 321 | 1 | 309 | 5.82e-60 | 194 |
| Msa0172890 | MtrunA17_Chr4g0047701 | 34.462 | 325 | 193 | 7 | 1 | 321 | 1 | 309 | 1.05e-59 | 193 |
| Msa0172890 | MtrunA17_Chr3g0086531 | 69.737 | 76 | 20 | 1 | 79 | 154 | 1 | 73 | 3.16e-32 | 115 |
| Msa0172890 | MtrunA17_Chr7g0272461 | 55.556 | 108 | 43 | 3 | 179 | 284 | 1 | 105 | 1.09e-31 | 115 |
| Msa0172890 | MtrunA17_Chr7g0272391 | 46.957 | 115 | 40 | 2 | 164 | 278 | 2 | 95 | 1.31e-24 | 96.3 |
| Msa0172890 | MtrunA17_Chr7g0272511 | 68.421 | 38 | 12 | 0 | 281 | 318 | 29 | 66 | 1.34e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172890 | AT3G05600.1 | 60.061 | 328 | 121 | 6 | 1 | 322 | 1 | 324 | 1.47e-145 | 413 |
| Msa0172890 | AT4G02340.1 | 54.630 | 324 | 137 | 5 | 1 | 322 | 1 | 316 | 4.77e-131 | 376 |
| Msa0172890 | AT4G15960.1 | 52.280 | 329 | 145 | 6 | 1 | 322 | 51 | 374 | 2.51e-116 | 341 |
| Msa0172890 | AT2G26740.1 | 55.692 | 325 | 134 | 6 | 4 | 322 | 1 | 321 | 5.28e-116 | 338 |
| Msa0172890 | AT2G26750.1 | 53.704 | 324 | 141 | 6 | 4 | 322 | 1 | 320 | 3.62e-110 | 323 |
| Msa0172890 | AT3G05600.2 | 61.382 | 246 | 86 | 5 | 1 | 240 | 1 | 243 | 5.74e-110 | 320 |
| Msa0172890 | AT4G15955.3 | 49.398 | 332 | 125 | 7 | 3 | 322 | 4 | 304 | 3.34e-101 | 300 |
| Msa0172890 | AT3G51000.1 | 44.411 | 331 | 158 | 8 | 3 | 322 | 4 | 319 | 2.53e-92 | 278 |
| Msa0172890 | AT4G15955.2 | 59.777 | 179 | 58 | 4 | 3 | 170 | 4 | 179 | 2.54e-69 | 214 |
| Msa0172890 | AT4G15955.1 | 60.000 | 170 | 54 | 4 | 3 | 161 | 4 | 170 | 5.54e-66 | 205 |
Find 100 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGTGGCCCCTGATCTTC+GGG | 0.210716 | 1_4:+58086888 | Msa0172890:CDS |
| TGATGTCTTGTGCTGCTTCT+TGG | 0.213872 | 1_4:-58087886 | None:intergenic |
| CTATTATGTGTGCAGATTTC+AGG | 0.219315 | 1_4:+58087182 | Msa0172890:CDS |
| ACATAGGCCTTGACTCTTTC+CGG | 0.225048 | 1_4:-58087072 | None:intergenic |
| CTCTTGGCGCCATCAGATTC+TGG | 0.252842 | 1_4:+58086843 | Msa0172890:CDS |
| GCATCATAGTTGTTTACTTT+GGG | 0.258817 | 1_4:-58087135 | None:intergenic |
| GTGCAGTGGCCCCTGATCTT+CGG | 0.304764 | 1_4:+58086887 | Msa0172890:CDS |
| GTTACTAAATTCAACAAAAC+TGG | 0.304863 | 1_4:+58087518 | Msa0172890:CDS |
| CCAGTTCCATACCCTCCTTT+TGG | 0.320325 | 1_4:-58087431 | None:intergenic |
| CAAGAAAGATGTTCCAGGTT+TGG | 0.350912 | 1_4:+58087823 | Msa0172890:CDS |
| GATGCATTTCATGCCAAGTA+TGG | 0.358360 | 1_4:+58087153 | Msa0172890:CDS |
| TCACCGTAGCCCCGAAGATC+AGG | 0.368042 | 1_4:-58086898 | None:intergenic |
| CACAGAATAGTAGAAGTAAA+TGG | 0.369517 | 1_4:+58086745 | Msa0172890:CDS |
| GTGTAGCTGGTCACTGATTC+CGG | 0.373779 | 1_4:-58086931 | None:intergenic |
| TTCAACAAAACTGGCTTCAC+TGG | 0.380968 | 1_4:+58087527 | Msa0172890:CDS |
| TGCATCATAGTTGTTTACTT+TGG | 0.388996 | 1_4:-58087136 | None:intergenic |
| TGCAGGATATCTTACCATCT+TGG | 0.393575 | 1_4:+58087468 | Msa0172890:CDS |
| TGGAAAAGCCGAAGCCGAAT+TGG | 0.398454 | 1_4:+58087340 | Msa0172890:CDS |
| CCAAAAGGAGGGTATGGAAC+TGG | 0.402502 | 1_4:+58087431 | Msa0172890:CDS |
| TCCCTGAGTTATGGTACTCT+TGG | 0.411714 | 1_4:+58086827 | Msa0172890:CDS |
| TACTCCAGCCAATTCGGCTT+CGG | 0.419392 | 1_4:-58087348 | None:intergenic |
| ATAATAATCAAGATCTTCTT+CGG | 0.431491 | 1_4:-58087495 | None:intergenic |
| TCACCTGTAATGTACTTTAC+CGG | 0.433581 | 1_4:-58087743 | None:intergenic |
| CATTACAGGTGATTGTGGTT+TGG | 0.434737 | 1_4:+58087754 | Msa0172890:CDS |
| TGCACGGTTTCCCTGAGTTA+TGG | 0.436444 | 1_4:+58086818 | Msa0172890:CDS |
| GTACCGGTAAAGTACATTAC+AGG | 0.438457 | 1_4:+58087740 | Msa0172890:CDS |
| GCCCCTGATCTTCGGGGCTA+CGG | 0.442117 | 1_4:+58086895 | Msa0172890:CDS |
| TGTACCTTGTCGGACATGAT+TGG | 0.443115 | 1_4:+58087013 | Msa0172890:CDS |
| ATCACCAACAAGGTGAAAAC+AGG | 0.453861 | 1_4:-58086953 | None:intergenic |
| GGTAAGATATCCTGCATATC+CGG | 0.455206 | 1_4:-58087461 | None:intergenic |
| GTTCCATTCCGACCCTTCCT+TGG | 0.455873 | 1_4:+58087105 | Msa0172890:CDS |
| TTTGGGGTTTCTTCCAAGGA+AGG | 0.460713 | 1_4:-58087118 | None:intergenic |
| TTACTTTGGGGTTTCTTCCA+AGG | 0.467534 | 1_4:-58087122 | None:intergenic |
| GGCCACTGCACGGTAACCCT+TGG | 0.471280 | 1_4:-58086875 | None:intergenic |
| GGTTTCAAGAAAGATGTTCC+AGG | 0.471931 | 1_4:+58087818 | Msa0172890:CDS |
| TGGATTCAATCCGGATATGC+AGG | 0.474601 | 1_4:+58087451 | Msa0172890:CDS |
| TGTTCCAGGTTTGGAGGAAG+TGG | 0.476149 | 1_4:+58087832 | Msa0172890:CDS |
| AACACCTACTCCAGCCAATT+CGG | 0.482718 | 1_4:-58087354 | None:intergenic |
| GTACCTTGTCGGACATGATT+GGG | 0.482847 | 1_4:+58087014 | Msa0172890:CDS |
| AAAATGCATGTTGCAGAGAA+AGG | 0.492527 | 1_4:+58086772 | Msa0172890:CDS |
| AAGGTGAAAACAGGTGTAGC+TGG | 0.497712 | 1_4:-58086944 | None:intergenic |
| TTTGGAGGAAGTGGTTGTGC+AGG | 0.503362 | 1_4:+58087841 | Msa0172890:CDS |
| ATAATAGTCATCTCCATACT+TGG | 0.505750 | 1_4:-58087166 | None:intergenic |
| CTACGGTGAAACTGAAGCTC+CGG | 0.515024 | 1_4:+58086912 | Msa0172890:CDS |
| GAGGAAGTGGTTGTGCAGGA+AGG | 0.517437 | 1_4:+58087845 | Msa0172890:CDS |
| TTGGGGTTTCTTCCAAGGAA+GGG | 0.521536 | 1_4:-58087117 | None:intergenic |
| AAAGCCGAAGCCGAATTGGC+TGG | 0.521985 | 1_4:+58087344 | Msa0172890:CDS |
| CGCCAAGAGTACCATAACTC+AGG | 0.523914 | 1_4:-58086829 | None:intergenic |
| CATGATTGGGGTGCGATCAT+CGG | 0.526291 | 1_4:+58087027 | Msa0172890:CDS |
| CATCATAGTTGTTTACTTTG+GGG | 0.527231 | 1_4:-58087134 | None:intergenic |
| AACAAAACTGGCTTCACTGG+AGG | 0.529011 | 1_4:+58087530 | Msa0172890:CDS |
| GTATGTTTGCATGTTCCGAC+CGG | 0.531431 | 1_4:+58087053 | Msa0172890:CDS |
| GATTCTGGATTTGAGCTCCA+AGG | 0.531726 | 1_4:+58086858 | Msa0172890:CDS |
| AGGAAGTGGTTGTGCAGGAA+GGG | 0.538638 | 1_4:+58087846 | Msa0172890:CDS |
| ACAACCACTTCCTCCAAACC+TGG | 0.541024 | 1_4:-58087836 | None:intergenic |
| CACCGTAGCCCCGAAGATCA+GGG | 0.541844 | 1_4:-58086897 | None:intergenic |
| CTTCCAAGGAAGGGTCGGAA+TGG | 0.543706 | 1_4:-58087108 | None:intergenic |
| AAGTACATTACAGGTGATTG+TGG | 0.546047 | 1_4:+58087749 | Msa0172890:CDS |
| CCAGTGGTGTTGATGTTGCA+CGG | 0.546061 | 1_4:+58086802 | Msa0172890:CDS |
| GAAAGATGTTCCAGGTTTGG+AGG | 0.547019 | 1_4:+58087826 | Msa0172890:CDS |
| ATTCTGGATTTGAGCTCCAA+GGG | 0.550282 | 1_4:+58086859 | Msa0172890:CDS |
| CCGTGCAACATCAACACCAC+TGG | 0.550819 | 1_4:-58086802 | None:intergenic |
| TGGAACACTAAGACAAACAT+AGG | 0.551680 | 1_4:-58087088 | None:intergenic |
| ACATCACCATGGAGTGAAGT+AGG | 0.556604 | 1_4:+58087707 | Msa0172890:CDS |
| GTGGACAAAGTGTACCTTGT+CGG | 0.558093 | 1_4:+58087003 | Msa0172890:CDS |
| GGTTTCTTCCAAGGAAGGGT+CGG | 0.558393 | 1_4:-58087113 | None:intergenic |
| CTCCAAGGGTTACCGTGCAG+TGG | 0.559388 | 1_4:+58086873 | Msa0172890:CDS |
| ATTGCACTCATTGACTCTCT+AGG | 0.560324 | 1_4:+58086979 | Msa0172890:CDS |
| ACAAAACTGGCTTCACTGGA+GGG | 0.561868 | 1_4:+58087531 | Msa0172890:CDS |
| TCTTCTTCGGAAAGCCAAGA+TGG | 0.563903 | 1_4:-58087482 | None:intergenic |
| TTTGGGAAAATTGGAGGACC+GGG | 0.570933 | 1_4:-58087413 | None:intergenic |
| ATGGTTACTTTCCAGGAACT+GGG | 0.571538 | 1_4:+58087679 | Msa0172890:intron |
| AGTAGGAGTGGTAAATGTAC+CGG | 0.572295 | 1_4:+58087724 | Msa0172890:CDS |
| GTATGGAACTGGATTCAATC+CGG | 0.573575 | 1_4:+58087442 | Msa0172890:CDS |
| TGATAACATTGATAGGAACC+TGG | 0.573596 | 1_4:+58087320 | Msa0172890:intron |
| ACCACTCCTACTTCACTCCA+TGG | 0.577429 | 1_4:-58087713 | None:intergenic |
| ATGATGACAACGAGGAAACC+CGG | 0.579962 | 1_4:+58087395 | Msa0172890:CDS |
| GAAGATCAGGGGCCACTGCA+CGG | 0.580274 | 1_4:-58086885 | None:intergenic |
| ATACACTACGCCGAGTATGA+AGG | 0.580910 | 1_4:+58087778 | Msa0172890:CDS |
| ATTGGGGTGCGATCATCGGT+TGG | 0.592371 | 1_4:+58087031 | Msa0172890:CDS |
| AGCTCAAATCCAGAATCTGA+TGG | 0.613338 | 1_4:-58086852 | None:intergenic |
| GCCAAGAGTACCATAACTCA+GGG | 0.614710 | 1_4:-58086828 | None:intergenic |
| CATGTTGCAGAGAAAGGAGA+AGG | 0.616899 | 1_4:+58086778 | Msa0172890:CDS |
| ACCGTAGCCCCGAAGATCAG+GGG | 0.621226 | 1_4:-58086896 | None:intergenic |
| AGGCCTTGACTCTTTCCGGT+CGG | 0.623489 | 1_4:-58087068 | None:intergenic |
| GTTCCGACCGGAAAGAGTCA+AGG | 0.623865 | 1_4:+58087065 | Msa0172890:CDS |
| GCAGTGGCCCCTGATCTTCG+GGG | 0.625803 | 1_4:+58086889 | Msa0172890:CDS |
| ATGAAGGAATATATCCTCGA+TGG | 0.629060 | 1_4:+58087794 | Msa0172890:CDS |
| CACCCCAATCATGTCCGACA+AGG | 0.629611 | 1_4:-58087017 | None:intergenic |
| AGGATATATTCCTTCATACT+CGG | 0.633804 | 1_4:-58087788 | None:intergenic |
| ACCATGGAGTGAAGTAGGAG+TGG | 0.635510 | 1_4:+58087712 | Msa0172890:CDS |
| TACCTTGTCGGACATGATTG+GGG | 0.642774 | 1_4:+58087015 | Msa0172890:CDS |
| AAGGAATATATCCTCGATGG+TGG | 0.654767 | 1_4:+58087797 | Msa0172890:CDS |
| AGAGAAAGGAGAAGGTCCAG+TGG | 0.656472 | 1_4:+58086786 | Msa0172890:CDS |
| GAAGCCGAATTGGCTGGAGT+AGG | 0.676454 | 1_4:+58087350 | Msa0172890:CDS |
| ACTCATTGACTCTCTAGGTG+TGG | 0.677971 | 1_4:+58086984 | Msa0172890:CDS |
| GTGCAATGATATCACCAACA+AGG | 0.702915 | 1_4:-58086963 | None:intergenic |
| CTTTCTTGAAACCACCATCG+AGG | 0.706418 | 1_4:-58087808 | None:intergenic |
| ACTGGGAGCTAACATCACCA+TGG | 0.711994 | 1_4:+58087696 | Msa0172890:CDS |
| TGCGTAACATGATGACAACG+AGG | 0.737897 | 1_4:+58087387 | Msa0172890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTAAATACAACAAAATTT+AGG | + | chr1_4:58087276-58087295 | Msa0172890:intron | 15.0% |
| !! | TACTAAATACAACAAAATTT+AGG | + | chr1_4:58087276-58087295 | Msa0172890:intron | 15.0% |
| !! | CTTTAGTATATATAAAGACA+TGG | + | chr1_4:58087231-58087250 | Msa0172890:intron | 20.0% |
| !!! | ACTTTATTGATAACATTGAT+AGG | + | chr1_4:58087313-58087332 | Msa0172890:intron | 20.0% |
| !! | ATAATAATCAAGATCTTCTT+CGG | - | chr1_4:58087498-58087517 | None:intergenic | 20.0% |
| !! | CTTTAGTATATATAAAGACA+TGG | + | chr1_4:58087231-58087250 | Msa0172890:intron | 20.0% |
| !!! | ACTTTATTGATAACATTGAT+AGG | + | chr1_4:58087313-58087332 | Msa0172890:intron | 20.0% |
| !! | ATAATAATCAAGATCTTCTT+CGG | - | chr1_4:58087498-58087517 | None:intergenic | 20.0% |
| ! | GTTACTAAATTCAACAAAAC+TGG | + | chr1_4:58087518-58087537 | Msa0172890:CDS | 25.0% |
| ! | GTTACTAAATTCAACAAAAC+TGG | + | chr1_4:58087518-58087537 | Msa0172890:CDS | 25.0% |
| CACAGAATAGTAGAAGTAAA+TGG | + | chr1_4:58086745-58086764 | Msa0172890:CDS | 30.0% | |
| CATCATAGTTGTTTACTTTG+GGG | - | chr1_4:58087137-58087156 | None:intergenic | 30.0% | |
| GCATCATAGTTGTTTACTTT+GGG | - | chr1_4:58087138-58087157 | None:intergenic | 30.0% | |
| TGCATCATAGTTGTTTACTT+TGG | - | chr1_4:58087139-58087158 | None:intergenic | 30.0% | |
| ATAATAGTCATCTCCATACT+TGG | - | chr1_4:58087169-58087188 | None:intergenic | 30.0% | |
| CATCATGTTACGCAAAAAAT+AGG | - | chr1_4:58087381-58087400 | None:intergenic | 30.0% | |
| CATTATCAACTAGTGAAAAG+AGG | - | chr1_4:58087662-58087681 | None:intergenic | 30.0% | |
| !!! | CTCTTTTCACTAGTTGATAA+TGG | + | chr1_4:58087660-58087679 | Msa0172890:intron | 30.0% |
| AGGATATATTCCTTCATACT+CGG | - | chr1_4:58087791-58087810 | None:intergenic | 30.0% | |
| CACAGAATAGTAGAAGTAAA+TGG | + | chr1_4:58086745-58086764 | Msa0172890:CDS | 30.0% | |
| CATCATAGTTGTTTACTTTG+GGG | - | chr1_4:58087137-58087156 | None:intergenic | 30.0% | |
| GCATCATAGTTGTTTACTTT+GGG | - | chr1_4:58087138-58087157 | None:intergenic | 30.0% | |
| TGCATCATAGTTGTTTACTT+TGG | - | chr1_4:58087139-58087158 | None:intergenic | 30.0% | |
| ATAATAGTCATCTCCATACT+TGG | - | chr1_4:58087169-58087188 | None:intergenic | 30.0% | |
| CATCATGTTACGCAAAAAAT+AGG | - | chr1_4:58087381-58087400 | None:intergenic | 30.0% | |
| CATTATCAACTAGTGAAAAG+AGG | - | chr1_4:58087662-58087681 | None:intergenic | 30.0% | |
| !!! | CTCTTTTCACTAGTTGATAA+TGG | + | chr1_4:58087660-58087679 | Msa0172890:intron | 30.0% |
| AGGATATATTCCTTCATACT+CGG | - | chr1_4:58087791-58087810 | None:intergenic | 30.0% | |
| AAAATGCATGTTGCAGAGAA+AGG | + | chr1_4:58086772-58086791 | Msa0172890:CDS | 35.0% | |
| TGGAACACTAAGACAAACAT+AGG | - | chr1_4:58087091-58087110 | None:intergenic | 35.0% | |
| CTATTATGTGTGCAGATTTC+AGG | + | chr1_4:58087182-58087201 | Msa0172890:CDS | 35.0% | |
| TGATAACATTGATAGGAACC+TGG | + | chr1_4:58087320-58087339 | Msa0172890:intron | 35.0% | |
| !! | GTTGATAATGGTTACTTTCC+AGG | + | chr1_4:58087672-58087691 | Msa0172890:intron | 35.0% |
| TCACCTGTAATGTACTTTAC+CGG | - | chr1_4:58087746-58087765 | None:intergenic | 35.0% | |
| AAGTACATTACAGGTGATTG+TGG | + | chr1_4:58087749-58087768 | Msa0172890:CDS | 35.0% | |
| ATGAAGGAATATATCCTCGA+TGG | + | chr1_4:58087794-58087813 | Msa0172890:CDS | 35.0% | |
| AAAATGCATGTTGCAGAGAA+AGG | + | chr1_4:58086772-58086791 | Msa0172890:CDS | 35.0% | |
| TGGAACACTAAGACAAACAT+AGG | - | chr1_4:58087091-58087110 | None:intergenic | 35.0% | |
| CTATTATGTGTGCAGATTTC+AGG | + | chr1_4:58087182-58087201 | Msa0172890:CDS | 35.0% | |
| TGATAACATTGATAGGAACC+TGG | + | chr1_4:58087320-58087339 | Msa0172890:intron | 35.0% | |
| !! | GTTGATAATGGTTACTTTCC+AGG | + | chr1_4:58087672-58087691 | Msa0172890:intron | 35.0% |
| TCACCTGTAATGTACTTTAC+CGG | - | chr1_4:58087746-58087765 | None:intergenic | 35.0% | |
| AAGTACATTACAGGTGATTG+TGG | + | chr1_4:58087749-58087768 | Msa0172890:CDS | 35.0% | |
| ATGAAGGAATATATCCTCGA+TGG | + | chr1_4:58087794-58087813 | Msa0172890:CDS | 35.0% | |
| AGCTCAAATCCAGAATCTGA+TGG | - | chr1_4:58086855-58086874 | None:intergenic | 40.0% | |
| ATTCTGGATTTGAGCTCCAA+GGG | + | chr1_4:58086859-58086878 | Msa0172890:CDS | 40.0% | |
| ! | TACACCTGTTTTCACCTTGT+TGG | + | chr1_4:58086949-58086968 | Msa0172890:CDS | 40.0% |
| ATCACCAACAAGGTGAAAAC+AGG | - | chr1_4:58086956-58086975 | None:intergenic | 40.0% | |
| GTGCAATGATATCACCAACA+AGG | - | chr1_4:58086966-58086985 | None:intergenic | 40.0% | |
| !! | ATTGCACTCATTGACTCTCT+AGG | + | chr1_4:58086979-58086998 | Msa0172890:CDS | 40.0% |
| !! | TTACTTTGGGGTTTCTTCCA+AGG | - | chr1_4:58087125-58087144 | None:intergenic | 40.0% |
| GATGCATTTCATGCCAAGTA+TGG | + | chr1_4:58087153-58087172 | Msa0172890:CDS | 40.0% | |
| !! | TTTTGGGAAAATTGGAGGAC+CGG | - | chr1_4:58087417-58087436 | None:intergenic | 40.0% |
| ! | CTCCAATTTTCCCAAAAGGA+GGG | + | chr1_4:58087420-58087439 | Msa0172890:CDS | 40.0% |
| !! | TACCCTCCTTTTGGGAAAAT+TGG | - | chr1_4:58087425-58087444 | None:intergenic | 40.0% |
| ! | ATTTTCCCAAAAGGAGGGTA+TGG | + | chr1_4:58087425-58087444 | Msa0172890:CDS | 40.0% |
| GTATGGAACTGGATTCAATC+CGG | + | chr1_4:58087442-58087461 | Msa0172890:CDS | 40.0% | |
| GGTAAGATATCCTGCATATC+CGG | - | chr1_4:58087464-58087483 | None:intergenic | 40.0% | |
| TGCAGGATATCTTACCATCT+TGG | + | chr1_4:58087468-58087487 | Msa0172890:CDS | 40.0% | |
| ! | TTCAACAAAACTGGCTTCAC+TGG | + | chr1_4:58087527-58087546 | Msa0172890:CDS | 40.0% |
| ! | AATGGTTACTTTCCAGGAAC+TGG | + | chr1_4:58087678-58087697 | Msa0172890:intron | 40.0% |
| ! | ATGGTTACTTTCCAGGAACT+GGG | + | chr1_4:58087679-58087698 | Msa0172890:intron | 40.0% |
| AGTAGGAGTGGTAAATGTAC+CGG | + | chr1_4:58087724-58087743 | Msa0172890:CDS | 40.0% | |
| ! | GTACCGGTAAAGTACATTAC+AGG | + | chr1_4:58087740-58087759 | Msa0172890:CDS | 40.0% |
| CATTACAGGTGATTGTGGTT+TGG | + | chr1_4:58087754-58087773 | Msa0172890:CDS | 40.0% | |
| AAGGAATATATCCTCGATGG+TGG | + | chr1_4:58087797-58087816 | Msa0172890:CDS | 40.0% | |
| GGTTTCAAGAAAGATGTTCC+AGG | + | chr1_4:58087818-58087837 | Msa0172890:CDS | 40.0% | |
| CAAGAAAGATGTTCCAGGTT+TGG | + | chr1_4:58087823-58087842 | Msa0172890:CDS | 40.0% | |
| AGCTCAAATCCAGAATCTGA+TGG | - | chr1_4:58086855-58086874 | None:intergenic | 40.0% | |
| ATTCTGGATTTGAGCTCCAA+GGG | + | chr1_4:58086859-58086878 | Msa0172890:CDS | 40.0% | |
| ! | TACACCTGTTTTCACCTTGT+TGG | + | chr1_4:58086949-58086968 | Msa0172890:CDS | 40.0% |
| ATCACCAACAAGGTGAAAAC+AGG | - | chr1_4:58086956-58086975 | None:intergenic | 40.0% | |
| GTGCAATGATATCACCAACA+AGG | - | chr1_4:58086966-58086985 | None:intergenic | 40.0% | |
| !! | ATTGCACTCATTGACTCTCT+AGG | + | chr1_4:58086979-58086998 | Msa0172890:CDS | 40.0% |
| !! | TTACTTTGGGGTTTCTTCCA+AGG | - | chr1_4:58087125-58087144 | None:intergenic | 40.0% |
| GATGCATTTCATGCCAAGTA+TGG | + | chr1_4:58087153-58087172 | Msa0172890:CDS | 40.0% | |
| !! | TTTTGGGAAAATTGGAGGAC+CGG | - | chr1_4:58087417-58087436 | None:intergenic | 40.0% |
| ! | CTCCAATTTTCCCAAAAGGA+GGG | + | chr1_4:58087420-58087439 | Msa0172890:CDS | 40.0% |
| !! | TACCCTCCTTTTGGGAAAAT+TGG | - | chr1_4:58087425-58087444 | None:intergenic | 40.0% |
| ! | ATTTTCCCAAAAGGAGGGTA+TGG | + | chr1_4:58087425-58087444 | Msa0172890:CDS | 40.0% |
| GTATGGAACTGGATTCAATC+CGG | + | chr1_4:58087442-58087461 | Msa0172890:CDS | 40.0% | |
| GGTAAGATATCCTGCATATC+CGG | - | chr1_4:58087464-58087483 | None:intergenic | 40.0% | |
| TGCAGGATATCTTACCATCT+TGG | + | chr1_4:58087468-58087487 | Msa0172890:CDS | 40.0% | |
| ! | TTCAACAAAACTGGCTTCAC+TGG | + | chr1_4:58087527-58087546 | Msa0172890:CDS | 40.0% |
| ! | AATGGTTACTTTCCAGGAAC+TGG | + | chr1_4:58087678-58087697 | Msa0172890:intron | 40.0% |
| ! | ATGGTTACTTTCCAGGAACT+GGG | + | chr1_4:58087679-58087698 | Msa0172890:intron | 40.0% |
| AGTAGGAGTGGTAAATGTAC+CGG | + | chr1_4:58087724-58087743 | Msa0172890:CDS | 40.0% | |
| ! | GTACCGGTAAAGTACATTAC+AGG | + | chr1_4:58087740-58087759 | Msa0172890:CDS | 40.0% |
| CATTACAGGTGATTGTGGTT+TGG | + | chr1_4:58087754-58087773 | Msa0172890:CDS | 40.0% | |
| AAGGAATATATCCTCGATGG+TGG | + | chr1_4:58087797-58087816 | Msa0172890:CDS | 40.0% | |
| GGTTTCAAGAAAGATGTTCC+AGG | + | chr1_4:58087818-58087837 | Msa0172890:CDS | 40.0% | |
| CAAGAAAGATGTTCCAGGTT+TGG | + | chr1_4:58087823-58087842 | Msa0172890:CDS | 40.0% | |
| CATGTTGCAGAGAAAGGAGA+AGG | + | chr1_4:58086778-58086797 | Msa0172890:CDS | 45.0% | |
| TCCCTGAGTTATGGTACTCT+TGG | + | chr1_4:58086827-58086846 | Msa0172890:CDS | 45.0% | |
| !! | GCCAAGAGTACCATAACTCA+GGG | - | chr1_4:58086831-58086850 | None:intergenic | 45.0% |
| GATTCTGGATTTGAGCTCCA+AGG | + | chr1_4:58086858-58086877 | Msa0172890:CDS | 45.0% | |
| AAGGTGAAAACAGGTGTAGC+TGG | - | chr1_4:58086947-58086966 | None:intergenic | 45.0% | |
| !! | ACTCATTGACTCTCTAGGTG+TGG | + | chr1_4:58086984-58087003 | Msa0172890:CDS | 45.0% |
| GTGGACAAAGTGTACCTTGT+CGG | + | chr1_4:58087003-58087022 | Msa0172890:CDS | 45.0% | |
| TGTACCTTGTCGGACATGAT+TGG | + | chr1_4:58087013-58087032 | Msa0172890:CDS | 45.0% | |
| GTACCTTGTCGGACATGATT+GGG | + | chr1_4:58087014-58087033 | Msa0172890:CDS | 45.0% | |
| TACCTTGTCGGACATGATTG+GGG | + | chr1_4:58087015-58087034 | Msa0172890:CDS | 45.0% | |
| GTATGTTTGCATGTTCCGAC+CGG | + | chr1_4:58087053-58087072 | Msa0172890:CDS | 45.0% | |
| ACATAGGCCTTGACTCTTTC+CGG | - | chr1_4:58087075-58087094 | None:intergenic | 45.0% | |
| TTGGGGTTTCTTCCAAGGAA+GGG | - | chr1_4:58087120-58087139 | None:intergenic | 45.0% | |
| ! | TTTGGGGTTTCTTCCAAGGA+AGG | - | chr1_4:58087121-58087140 | None:intergenic | 45.0% |
| AACACCTACTCCAGCCAATT+CGG | - | chr1_4:58087357-58087376 | None:intergenic | 45.0% | |
| TGCGTAACATGATGACAACG+AGG | + | chr1_4:58087387-58087406 | Msa0172890:CDS | 45.0% | |
| ATGATGACAACGAGGAAACC+CGG | + | chr1_4:58087395-58087414 | Msa0172890:CDS | 45.0% | |
| TTTGGGAAAATTGGAGGACC+GGG | - | chr1_4:58087416-58087435 | None:intergenic | 45.0% | |
| ! | GGTCCTCCAATTTTCCCAAA+AGG | + | chr1_4:58087416-58087435 | Msa0172890:CDS | 45.0% |
| !! | CCTCCTTTTGGGAAAATTGG+AGG | - | chr1_4:58087422-58087441 | None:intergenic | 45.0% |
| ! | CCTCCAATTTTCCCAAAAGG+AGG | + | chr1_4:58087419-58087438 | Msa0172890:CDS | 45.0% |
| ! | CAGTTCCATACCCTCCTTTT+GGG | - | chr1_4:58087433-58087452 | None:intergenic | 45.0% |
| TGGATTCAATCCGGATATGC+AGG | + | chr1_4:58087451-58087470 | Msa0172890:CDS | 45.0% | |
| TCTTCTTCGGAAAGCCAAGA+TGG | - | chr1_4:58087485-58087504 | None:intergenic | 45.0% | |
| ! | AACAAAACTGGCTTCACTGG+AGG | + | chr1_4:58087530-58087549 | Msa0172890:CDS | 45.0% |
| ! | ACAAAACTGGCTTCACTGGA+GGG | + | chr1_4:58087531-58087550 | Msa0172890:CDS | 45.0% |
| ACATCACCATGGAGTGAAGT+AGG | + | chr1_4:58087707-58087726 | Msa0172890:CDS | 45.0% | |
| ATACACTACGCCGAGTATGA+AGG | + | chr1_4:58087778-58087797 | Msa0172890:CDS | 45.0% | |
| CTTTCTTGAAACCACCATCG+AGG | - | chr1_4:58087811-58087830 | None:intergenic | 45.0% | |
| GAAAGATGTTCCAGGTTTGG+AGG | + | chr1_4:58087826-58087845 | Msa0172890:CDS | 45.0% | |
| !! | TGATGTCTTGTGCTGCTTCT+TGG | - | chr1_4:58087889-58087908 | None:intergenic | 45.0% |
| CATGTTGCAGAGAAAGGAGA+AGG | + | chr1_4:58086778-58086797 | Msa0172890:CDS | 45.0% | |
| TCCCTGAGTTATGGTACTCT+TGG | + | chr1_4:58086827-58086846 | Msa0172890:CDS | 45.0% | |
| !! | GCCAAGAGTACCATAACTCA+GGG | - | chr1_4:58086831-58086850 | None:intergenic | 45.0% |
| GATTCTGGATTTGAGCTCCA+AGG | + | chr1_4:58086858-58086877 | Msa0172890:CDS | 45.0% | |
| AAGGTGAAAACAGGTGTAGC+TGG | - | chr1_4:58086947-58086966 | None:intergenic | 45.0% | |
| !! | ACTCATTGACTCTCTAGGTG+TGG | + | chr1_4:58086984-58087003 | Msa0172890:CDS | 45.0% |
| GTGGACAAAGTGTACCTTGT+CGG | + | chr1_4:58087003-58087022 | Msa0172890:CDS | 45.0% | |
| TGTACCTTGTCGGACATGAT+TGG | + | chr1_4:58087013-58087032 | Msa0172890:CDS | 45.0% | |
| GTACCTTGTCGGACATGATT+GGG | + | chr1_4:58087014-58087033 | Msa0172890:CDS | 45.0% | |
| TACCTTGTCGGACATGATTG+GGG | + | chr1_4:58087015-58087034 | Msa0172890:CDS | 45.0% | |
| GTATGTTTGCATGTTCCGAC+CGG | + | chr1_4:58087053-58087072 | Msa0172890:CDS | 45.0% | |
| ACATAGGCCTTGACTCTTTC+CGG | - | chr1_4:58087075-58087094 | None:intergenic | 45.0% | |
| TTGGGGTTTCTTCCAAGGAA+GGG | - | chr1_4:58087120-58087139 | None:intergenic | 45.0% | |
| ! | TTTGGGGTTTCTTCCAAGGA+AGG | - | chr1_4:58087121-58087140 | None:intergenic | 45.0% |
| AACACCTACTCCAGCCAATT+CGG | - | chr1_4:58087357-58087376 | None:intergenic | 45.0% | |
| TGCGTAACATGATGACAACG+AGG | + | chr1_4:58087387-58087406 | Msa0172890:CDS | 45.0% | |
| ATGATGACAACGAGGAAACC+CGG | + | chr1_4:58087395-58087414 | Msa0172890:CDS | 45.0% | |
| TTTGGGAAAATTGGAGGACC+GGG | - | chr1_4:58087416-58087435 | None:intergenic | 45.0% | |
| ! | GGTCCTCCAATTTTCCCAAA+AGG | + | chr1_4:58087416-58087435 | Msa0172890:CDS | 45.0% |
| !! | CCTCCTTTTGGGAAAATTGG+AGG | - | chr1_4:58087422-58087441 | None:intergenic | 45.0% |
| ! | CCTCCAATTTTCCCAAAAGG+AGG | + | chr1_4:58087419-58087438 | Msa0172890:CDS | 45.0% |
| ! | CAGTTCCATACCCTCCTTTT+GGG | - | chr1_4:58087433-58087452 | None:intergenic | 45.0% |
| TGGATTCAATCCGGATATGC+AGG | + | chr1_4:58087451-58087470 | Msa0172890:CDS | 45.0% | |
| TCTTCTTCGGAAAGCCAAGA+TGG | - | chr1_4:58087485-58087504 | None:intergenic | 45.0% | |
| ! | AACAAAACTGGCTTCACTGG+AGG | + | chr1_4:58087530-58087549 | Msa0172890:CDS | 45.0% |
| ! | ACAAAACTGGCTTCACTGGA+GGG | + | chr1_4:58087531-58087550 | Msa0172890:CDS | 45.0% |
| ACATCACCATGGAGTGAAGT+AGG | + | chr1_4:58087707-58087726 | Msa0172890:CDS | 45.0% | |
| ATACACTACGCCGAGTATGA+AGG | + | chr1_4:58087778-58087797 | Msa0172890:CDS | 45.0% | |
| CTTTCTTGAAACCACCATCG+AGG | - | chr1_4:58087811-58087830 | None:intergenic | 45.0% | |
| GAAAGATGTTCCAGGTTTGG+AGG | + | chr1_4:58087826-58087845 | Msa0172890:CDS | 45.0% | |
| !! | TGATGTCTTGTGCTGCTTCT+TGG | - | chr1_4:58087889-58087908 | None:intergenic | 45.0% |
| !!! | CTTTTTATTTTTATAAATTT+TGG | - | chr1_4:58087616-58087635 | None:intergenic | 5.0% |
| !! | CAAAATTTATAAAAATAAAA+AGG | + | chr1_4:58087614-58087633 | Msa0172890:intron | 5.0% |
| !!! | CTTTTTATTTTTATAAATTT+TGG | - | chr1_4:58087616-58087635 | None:intergenic | 5.0% |
| !! | CAAAATTTATAAAAATAAAA+AGG | + | chr1_4:58087614-58087633 | Msa0172890:intron | 5.0% |
| AGAGAAAGGAGAAGGTCCAG+TGG | + | chr1_4:58086786-58086805 | Msa0172890:CDS | 50.0% | |
| !! | CCAGTGGTGTTGATGTTGCA+CGG | + | chr1_4:58086802-58086821 | Msa0172890:CDS | 50.0% |
| TGCACGGTTTCCCTGAGTTA+TGG | + | chr1_4:58086818-58086837 | Msa0172890:CDS | 50.0% | |
| !! | CGCCAAGAGTACCATAACTC+AGG | - | chr1_4:58086832-58086851 | None:intergenic | 50.0% |
| CTACGGTGAAACTGAAGCTC+CGG | + | chr1_4:58086912-58086931 | Msa0172890:CDS | 50.0% | |
| !! | GTGTAGCTGGTCACTGATTC+CGG | - | chr1_4:58086934-58086953 | None:intergenic | 50.0% |
| CATGATTGGGGTGCGATCAT+CGG | + | chr1_4:58087027-58087046 | Msa0172890:CDS | 50.0% | |
| GGTTTCTTCCAAGGAAGGGT+CGG | - | chr1_4:58087116-58087135 | None:intergenic | 50.0% | |
| ! | AATTCGGCTTCGGCTTTTCC+AGG | - | chr1_4:58087341-58087360 | None:intergenic | 50.0% |
| TGGAAAAGCCGAAGCCGAAT+TGG | + | chr1_4:58087340-58087359 | Msa0172890:CDS | 50.0% | |
| TACTCCAGCCAATTCGGCTT+CGG | - | chr1_4:58087351-58087370 | None:intergenic | 50.0% | |
| ! | CCAGTTCCATACCCTCCTTT+TGG | - | chr1_4:58087434-58087453 | None:intergenic | 50.0% |
| ! | CCAAAAGGAGGGTATGGAAC+TGG | + | chr1_4:58087431-58087450 | Msa0172890:CDS | 50.0% |
| TGATGTTAGCTCCCAGTTCC+TGG | - | chr1_4:58087693-58087712 | None:intergenic | 50.0% | |
| ACTGGGAGCTAACATCACCA+TGG | + | chr1_4:58087696-58087715 | Msa0172890:CDS | 50.0% | |
| ACCATGGAGTGAAGTAGGAG+TGG | + | chr1_4:58087712-58087731 | Msa0172890:CDS | 50.0% | |
| ACCACTCCTACTTCACTCCA+TGG | - | chr1_4:58087716-58087735 | None:intergenic | 50.0% | |
| TGTTCCAGGTTTGGAGGAAG+TGG | + | chr1_4:58087832-58087851 | Msa0172890:CDS | 50.0% | |
| ACAACCACTTCCTCCAAACC+TGG | - | chr1_4:58087839-58087858 | None:intergenic | 50.0% | |
| TTTGGAGGAAGTGGTTGTGC+AGG | + | chr1_4:58087841-58087860 | Msa0172890:CDS | 50.0% | |
| AGGAAGTGGTTGTGCAGGAA+GGG | + | chr1_4:58087846-58087865 | Msa0172890:CDS | 50.0% | |
| AGAGAAAGGAGAAGGTCCAG+TGG | + | chr1_4:58086786-58086805 | Msa0172890:CDS | 50.0% | |
| !! | CCAGTGGTGTTGATGTTGCA+CGG | + | chr1_4:58086802-58086821 | Msa0172890:CDS | 50.0% |
| TGCACGGTTTCCCTGAGTTA+TGG | + | chr1_4:58086818-58086837 | Msa0172890:CDS | 50.0% | |
| !! | CGCCAAGAGTACCATAACTC+AGG | - | chr1_4:58086832-58086851 | None:intergenic | 50.0% |
| CTACGGTGAAACTGAAGCTC+CGG | + | chr1_4:58086912-58086931 | Msa0172890:CDS | 50.0% | |
| !! | GTGTAGCTGGTCACTGATTC+CGG | - | chr1_4:58086934-58086953 | None:intergenic | 50.0% |
| CATGATTGGGGTGCGATCAT+CGG | + | chr1_4:58087027-58087046 | Msa0172890:CDS | 50.0% | |
| GGTTTCTTCCAAGGAAGGGT+CGG | - | chr1_4:58087116-58087135 | None:intergenic | 50.0% | |
| ! | AATTCGGCTTCGGCTTTTCC+AGG | - | chr1_4:58087341-58087360 | None:intergenic | 50.0% |
| TGGAAAAGCCGAAGCCGAAT+TGG | + | chr1_4:58087340-58087359 | Msa0172890:CDS | 50.0% | |
| TACTCCAGCCAATTCGGCTT+CGG | - | chr1_4:58087351-58087370 | None:intergenic | 50.0% | |
| ! | CCAGTTCCATACCCTCCTTT+TGG | - | chr1_4:58087434-58087453 | None:intergenic | 50.0% |
| ! | CCAAAAGGAGGGTATGGAAC+TGG | + | chr1_4:58087431-58087450 | Msa0172890:CDS | 50.0% |
| TGATGTTAGCTCCCAGTTCC+TGG | - | chr1_4:58087693-58087712 | None:intergenic | 50.0% | |
| ACTGGGAGCTAACATCACCA+TGG | + | chr1_4:58087696-58087715 | Msa0172890:CDS | 50.0% | |
| ACCATGGAGTGAAGTAGGAG+TGG | + | chr1_4:58087712-58087731 | Msa0172890:CDS | 50.0% | |
| ACCACTCCTACTTCACTCCA+TGG | - | chr1_4:58087716-58087735 | None:intergenic | 50.0% | |
| TGTTCCAGGTTTGGAGGAAG+TGG | + | chr1_4:58087832-58087851 | Msa0172890:CDS | 50.0% | |
| ACAACCACTTCCTCCAAACC+TGG | - | chr1_4:58087839-58087858 | None:intergenic | 50.0% | |
| TTTGGAGGAAGTGGTTGTGC+AGG | + | chr1_4:58087841-58087860 | Msa0172890:CDS | 50.0% | |
| AGGAAGTGGTTGTGCAGGAA+GGG | + | chr1_4:58087846-58087865 | Msa0172890:CDS | 50.0% | |
| CCGTGCAACATCAACACCAC+TGG | - | chr1_4:58086805-58086824 | None:intergenic | 55.0% | |
| CTCTTGGCGCCATCAGATTC+TGG | + | chr1_4:58086843-58086862 | Msa0172890:CDS | 55.0% | |
| CACCCCAATCATGTCCGACA+AGG | - | chr1_4:58087020-58087039 | None:intergenic | 55.0% | |
| ATTGGGGTGCGATCATCGGT+TGG | + | chr1_4:58087031-58087050 | Msa0172890:CDS | 55.0% | |
| GTTCCGACCGGAAAGAGTCA+AGG | + | chr1_4:58087065-58087084 | Msa0172890:CDS | 55.0% | |
| AGGCCTTGACTCTTTCCGGT+CGG | - | chr1_4:58087071-58087090 | None:intergenic | 55.0% | |
| GTTCCATTCCGACCCTTCCT+TGG | + | chr1_4:58087105-58087124 | Msa0172890:CDS | 55.0% | |
| CTTCCAAGGAAGGGTCGGAA+TGG | - | chr1_4:58087111-58087130 | None:intergenic | 55.0% | |
| AAAGCCGAAGCCGAATTGGC+TGG | + | chr1_4:58087344-58087363 | Msa0172890:CDS | 55.0% | |
| GAAGCCGAATTGGCTGGAGT+AGG | + | chr1_4:58087350-58087369 | Msa0172890:CDS | 55.0% | |
| GAGGAAGTGGTTGTGCAGGA+AGG | + | chr1_4:58087845-58087864 | Msa0172890:CDS | 55.0% | |
| CCGTGCAACATCAACACCAC+TGG | - | chr1_4:58086805-58086824 | None:intergenic | 55.0% | |
| CTCTTGGCGCCATCAGATTC+TGG | + | chr1_4:58086843-58086862 | Msa0172890:CDS | 55.0% | |
| CACCCCAATCATGTCCGACA+AGG | - | chr1_4:58087020-58087039 | None:intergenic | 55.0% | |
| ATTGGGGTGCGATCATCGGT+TGG | + | chr1_4:58087031-58087050 | Msa0172890:CDS | 55.0% | |
| GTTCCGACCGGAAAGAGTCA+AGG | + | chr1_4:58087065-58087084 | Msa0172890:CDS | 55.0% | |
| AGGCCTTGACTCTTTCCGGT+CGG | - | chr1_4:58087071-58087090 | None:intergenic | 55.0% | |
| GTTCCATTCCGACCCTTCCT+TGG | + | chr1_4:58087105-58087124 | Msa0172890:CDS | 55.0% | |
| CTTCCAAGGAAGGGTCGGAA+TGG | - | chr1_4:58087111-58087130 | None:intergenic | 55.0% | |
| AAAGCCGAAGCCGAATTGGC+TGG | + | chr1_4:58087344-58087363 | Msa0172890:CDS | 55.0% | |
| GAAGCCGAATTGGCTGGAGT+AGG | + | chr1_4:58087350-58087369 | Msa0172890:CDS | 55.0% | |
| GAGGAAGTGGTTGTGCAGGA+AGG | + | chr1_4:58087845-58087864 | Msa0172890:CDS | 55.0% | |
| CTCCAAGGGTTACCGTGCAG+TGG | + | chr1_4:58086873-58086892 | Msa0172890:CDS | 60.0% | |
| GAAGATCAGGGGCCACTGCA+CGG | - | chr1_4:58086888-58086907 | None:intergenic | 60.0% | |
| GTGCAGTGGCCCCTGATCTT+CGG | + | chr1_4:58086887-58086906 | Msa0172890:CDS | 60.0% | |
| TGCAGTGGCCCCTGATCTTC+GGG | + | chr1_4:58086888-58086907 | Msa0172890:CDS | 60.0% | |
| ACCGTAGCCCCGAAGATCAG+GGG | - | chr1_4:58086899-58086918 | None:intergenic | 60.0% | |
| CACCGTAGCCCCGAAGATCA+GGG | - | chr1_4:58086900-58086919 | None:intergenic | 60.0% | |
| TCACCGTAGCCCCGAAGATC+AGG | - | chr1_4:58086901-58086920 | None:intergenic | 60.0% | |
| CTCCAAGGGTTACCGTGCAG+TGG | + | chr1_4:58086873-58086892 | Msa0172890:CDS | 60.0% | |
| GAAGATCAGGGGCCACTGCA+CGG | - | chr1_4:58086888-58086907 | None:intergenic | 60.0% | |
| GTGCAGTGGCCCCTGATCTT+CGG | + | chr1_4:58086887-58086906 | Msa0172890:CDS | 60.0% | |
| TGCAGTGGCCCCTGATCTTC+GGG | + | chr1_4:58086888-58086907 | Msa0172890:CDS | 60.0% | |
| ACCGTAGCCCCGAAGATCAG+GGG | - | chr1_4:58086899-58086918 | None:intergenic | 60.0% | |
| CACCGTAGCCCCGAAGATCA+GGG | - | chr1_4:58086900-58086919 | None:intergenic | 60.0% | |
| TCACCGTAGCCCCGAAGATC+AGG | - | chr1_4:58086901-58086920 | None:intergenic | 60.0% | |
| GGCCACTGCACGGTAACCCT+TGG | - | chr1_4:58086878-58086897 | None:intergenic | 65.0% | |
| GCAGTGGCCCCTGATCTTCG+GGG | + | chr1_4:58086889-58086908 | Msa0172890:CDS | 65.0% | |
| GCCCCTGATCTTCGGGGCTA+CGG | + | chr1_4:58086895-58086914 | Msa0172890:CDS | 65.0% | |
| GGCCACTGCACGGTAACCCT+TGG | - | chr1_4:58086878-58086897 | None:intergenic | 65.0% | |
| GCAGTGGCCCCTGATCTTCG+GGG | + | chr1_4:58086889-58086908 | Msa0172890:CDS | 65.0% | |
| GCCCCTGATCTTCGGGGCTA+CGG | + | chr1_4:58086895-58086914 | Msa0172890:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58086730 | 58087943 | 58086730 | ID=Msa0172890;Name=Msa0172890 |
| chr1_4 | mRNA | 58086730 | 58087943 | 58086730 | ID=Msa0172890-mRNA-1;Parent=Msa0172890;Name=Msa0172890-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|322 |
| chr1_4 | exon | 58086730 | 58087203 | 58086730 | ID=Msa0172890-mRNA-1:exon:17872;Parent=Msa0172890-mRNA-1 |
| chr1_4 | exon | 58087335 | 58087579 | 58087335 | ID=Msa0172890-mRNA-1:exon:17873;Parent=Msa0172890-mRNA-1 |
| chr1_4 | exon | 58087694 | 58087943 | 58087694 | ID=Msa0172890-mRNA-1:exon:17874;Parent=Msa0172890-mRNA-1 |
| chr1_4 | CDS | 58086730 | 58087203 | 58086730 | ID=Msa0172890-mRNA-1:cds;Parent=Msa0172890-mRNA-1 |
| chr1_4 | CDS | 58087335 | 58087579 | 58087335 | ID=Msa0172890-mRNA-1:cds;Parent=Msa0172890-mRNA-1 |
| chr1_4 | CDS | 58087694 | 58087943 | 58087694 | ID=Msa0172890-mRNA-1:cds;Parent=Msa0172890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
