Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353130 | XP_024639104.1 | 90.062 | 161 | 14 | 1 | 4 | 164 | 10 | 168 | 2.94e-103 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353130 | A0A396HJ62 | 90.062 | 161 | 14 | 1 | 4 | 164 | 20 | 178 | 1.46e-103 | 305 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa1353130 | 0.816883 | 4.396094e-52 | -8.615850e-47 |
| Msa0046430 | Msa1353130 | 0.803275 | 3.768426e-49 | -8.615850e-47 |
| Msa0064990 | Msa1353130 | 0.803462 | 3.445902e-49 | -8.615850e-47 |
| Msa0098380 | Msa1353130 | 0.808487 | 3.022938e-50 | -8.615850e-47 |
| Msa0114610 | Msa1353130 | 0.803299 | 3.724751e-49 | -8.615850e-47 |
| Msa1344930 | Msa1353130 | 0.819151 | 1.350389e-52 | -8.615850e-47 |
| Msa1345390 | Msa1353130 | 0.842648 | 2.274526e-58 | -8.615850e-47 |
| Msa1353130 | Msa1366480 | 0.815078 | 1.111180e-51 | -8.615850e-47 |
| Msa1353130 | Msa1375640 | 0.804975 | 1.668603e-49 | -8.615850e-47 |
| Msa1353130 | Msa1398120 | 0.820693 | 5.995163e-53 | -8.615850e-47 |
| Msa1353130 | Msa1459930 | 0.812354 | 4.421464e-51 | -8.615850e-47 |
| Msa0609460 | Msa1353130 | 0.806824 | 6.817643e-50 | -8.615850e-47 |
| Msa0628200 | Msa1353130 | 0.808180 | 3.515333e-50 | -8.615850e-47 |
| Msa0631700 | Msa1353130 | 0.802805 | 4.712828e-49 | -8.615850e-47 |
| Msa0634290 | Msa1353130 | 0.806007 | 1.014037e-49 | -8.615850e-47 |
| Msa0651820 | Msa1353130 | 0.807416 | 5.109291e-50 | -8.615850e-47 |
| Msa0668220 | Msa1353130 | 0.811664 | 6.252200e-51 | -8.615850e-47 |
| Msa0675630 | Msa1353130 | 0.806591 | 7.635831e-50 | -8.615850e-47 |
| Msa0685080 | Msa1353130 | 0.807220 | 5.622372e-50 | -8.615850e-47 |
| Msa0695630 | Msa1353130 | 0.809427 | 1.902236e-50 | -8.615850e-47 |
| Msa0701430 | Msa1353130 | 0.820520 | 6.566694e-53 | -8.615850e-47 |
| Msa0735340 | Msa1353130 | 0.805352 | 1.391531e-49 | -8.615850e-47 |
| Msa0793570 | Msa1353130 | 0.838707 | 2.449981e-57 | -8.615850e-47 |
| Msa0795320 | Msa1353130 | 0.809377 | 1.950018e-50 | -8.615850e-47 |
| Msa0799120 | Msa1353130 | 0.800619 | 1.323802e-48 | -8.615850e-47 |
| Msa0826360 | Msa1353130 | 0.819333 | 1.227285e-52 | -8.615850e-47 |
| Msa0826370 | Msa1353130 | 0.810520 | 1.106840e-50 | -8.615850e-47 |
| Msa0120860 | Msa1353130 | 0.809522 | 1.815477e-50 | -8.615850e-47 |
| Msa0121320 | Msa1353130 | 0.821898 | 3.160854e-53 | -8.615850e-47 |
| Msa0137760 | Msa1353130 | 0.803401 | 3.547675e-49 | -8.615850e-47 |
| Msa0140270 | Msa1353130 | 0.802699 | 4.956866e-49 | -8.615850e-47 |
| Msa0150910 | Msa1353130 | 0.804588 | 2.010020e-49 | -8.615850e-47 |
| Msa0164560 | Msa1353130 | 0.801182 | 1.015942e-48 | -8.615850e-47 |
| Msa0166180 | Msa1353130 | 0.816124 | 6.499688e-52 | -8.615850e-47 |
| Msa0175060 | Msa1353130 | 0.814342 | 1.617819e-51 | -8.615850e-47 |
| Msa0182840 | Msa1353130 | 0.806927 | 6.483790e-50 | -8.615850e-47 |
| Msa0190670 | Msa1353130 | 0.809753 | 1.619032e-50 | -8.615850e-47 |
| Msa0196280 | Msa1353130 | 0.805866 | 1.085273e-49 | -8.615850e-47 |
| Msa0203880 | Msa1353130 | 0.801928 | 7.142066e-49 | -8.615850e-47 |
| Msa0214800 | Msa1353130 | 0.807797 | 4.241930e-50 | -8.615850e-47 |
| Msa0238140 | Msa1353130 | 0.833192 | 6.140308e-56 | -8.615850e-47 |
| Msa1226210 | Msa1353130 | 0.809388 | 1.939701e-50 | -8.615850e-47 |
| Msa1245530 | Msa1353130 | 0.809869 | 1.528906e-50 | -8.615850e-47 |
| Msa1254870 | Msa1353130 | 0.823762 | 1.163208e-53 | -8.615850e-47 |
| Msa1254910 | Msa1353130 | 0.800034 | 1.741863e-48 | -8.615850e-47 |
| Msa1256730 | Msa1353130 | 0.800470 | 1.419935e-48 | -8.615850e-47 |
| Msa1262650 | Msa1353130 | 0.800497 | 1.401675e-48 | -8.615850e-47 |
| Msa1269200 | Msa1353130 | 0.811096 | 8.305207e-51 | -8.615850e-47 |
| Msa1298090 | Msa1353130 | 0.802770 | 4.791045e-49 | -8.615850e-47 |
| Msa1322500 | Msa1353130 | 0.830153 | 3.448030e-55 | -8.615850e-47 |
| Msa1328430 | Msa1353130 | 0.822728 | 2.027663e-53 | -8.615850e-47 |
| Msa1343590 | Msa1353130 | 0.815342 | 9.708246e-52 | -8.615850e-47 |
| Msa0369990 | Msa1353130 | 0.803772 | 2.971856e-49 | -8.615850e-47 |
| Msa0405200 | Msa1353130 | 0.814230 | 1.713014e-51 | -8.615850e-47 |
| Msa0414480 | Msa1353130 | 0.804818 | 1.799411e-49 | -8.615850e-47 |
| Msa0417400 | Msa1353130 | 0.805703 | 1.174468e-49 | -8.615850e-47 |
| Msa0449500 | Msa1353130 | 0.801383 | 9.240760e-49 | -8.615850e-47 |
| Msa0464310 | Msa1353130 | 0.813260 | 2.800258e-51 | -8.615850e-47 |
| Msa0472390 | Msa1353130 | 0.800868 | 1.177625e-48 | -8.615850e-47 |
| Msa0996980 | Msa1353130 | 0.802387 | 5.746260e-49 | -8.615850e-47 |
| Msa1037360 | Msa1353130 | 0.804968 | 1.674372e-49 | -8.615850e-47 |
| Msa1041250 | Msa1353130 | 0.801244 | 9.865002e-49 | -8.615850e-47 |
| Msa1047300 | Msa1353130 | 0.812511 | 4.085999e-51 | -8.615850e-47 |
| Msa1047340 | Msa1353130 | 0.813491 | 2.491492e-51 | -8.615850e-47 |
| Msa1049810 | Msa1353130 | 0.805608 | 1.229773e-49 | -8.615850e-47 |
| Msa1064940 | Msa1353130 | 0.802991 | 4.314013e-49 | -8.615850e-47 |
| Msa1082080 | Msa1353130 | 0.813574 | 2.389627e-51 | -8.615850e-47 |
| Msa1087380 | Msa1353130 | 0.812166 | 4.859924e-51 | -8.615850e-47 |
| Msa0242720 | Msa1353130 | 0.820822 | 5.598917e-53 | -8.615850e-47 |
| Msa0248320 | Msa1353130 | 0.804139 | 2.493556e-49 | -8.615850e-47 |
| Msa0258740 | Msa1353130 | 0.802041 | 6.771912e-49 | -8.615850e-47 |
| Msa0269710 | Msa1353130 | 0.826964 | 2.031611e-54 | -8.615850e-47 |
| Msa0275570 | Msa1353130 | 0.810112 | 1.355065e-50 | -8.615850e-47 |
| Msa0276780 | Msa1353130 | 0.828771 | 7.469574e-55 | -8.615850e-47 |
| Msa0278950 | Msa1353130 | 0.810784 | 9.704237e-51 | -8.615850e-47 |
| Msa0285420 | Msa1353130 | 0.834478 | 2.928995e-56 | -8.615850e-47 |
| Msa0294200 | Msa1353130 | 0.805394 | 1.363388e-49 | -8.615850e-47 |
| Msa0303900 | Msa1353130 | 0.811605 | 6.439945e-51 | -8.615850e-47 |
| Msa0308740 | Msa1353130 | 0.825131 | 5.539749e-54 | -8.615850e-47 |
| Msa0323090 | Msa1353130 | 0.802711 | 4.927748e-49 | -8.615850e-47 |
| Msa0324220 | Msa1353130 | 0.831960 | 1.240849e-55 | -8.615850e-47 |
| Msa0324810 | Msa1353130 | 0.820327 | 7.271493e-53 | -8.615850e-47 |
| Msa0333770 | Msa1353130 | 0.809242 | 2.084862e-50 | -8.615850e-47 |
| Msa0346170 | Msa1353130 | 0.800057 | 1.722560e-48 | -8.615850e-47 |
| Msa0358470 | Msa1353130 | 0.818877 | 1.558301e-52 | -8.615850e-47 |
| Msa1110900 | Msa1353130 | 0.807430 | 5.075310e-50 | -8.615850e-47 |
| Msa1123000 | Msa1353130 | 0.814365 | 1.598741e-51 | -8.615850e-47 |
| Msa1146980 | Msa1353130 | 0.802852 | 4.609182e-49 | -8.615850e-47 |
| Msa1157200 | Msa1353130 | 0.843636 | 1.240825e-58 | -8.615850e-47 |
| Msa1164230 | Msa1353130 | 0.836976 | 6.825291e-57 | -8.615850e-47 |
| Msa1165670 | Msa1353130 | 0.814162 | 1.772917e-51 | -8.615850e-47 |
| Msa1188080 | Msa1353130 | 0.810394 | 1.178299e-50 | -8.615850e-47 |
| Msa1202110 | Msa1353130 | 0.822063 | 2.894458e-53 | -8.615850e-47 |
| Msa0496070 | Msa1353130 | 0.806731 | 7.132877e-50 | -8.615850e-47 |
| Msa0497680 | Msa1353130 | 0.809662 | 1.693730e-50 | -8.615850e-47 |
| Msa0531050 | Msa1353130 | 0.809068 | 2.270823e-50 | -8.615850e-47 |
| Msa0538050 | Msa1353130 | -0.803772 | 2.971304e-49 | -8.615850e-47 |
| Msa0538450 | Msa1353130 | 0.814714 | 1.338737e-51 | -8.615850e-47 |
| Msa0538520 | Msa1353130 | 0.811351 | 7.311469e-51 | -8.615850e-47 |
| Msa0554660 | Msa1353130 | 0.802878 | 4.552354e-49 | -8.615850e-47 |
| Msa0565180 | Msa1353130 | 0.811865 | 5.654637e-51 | -8.615850e-47 |
| Msa0580210 | Msa1353130 | 0.804070 | 2.577255e-49 | -8.615850e-47 |
| Msa0588040 | Msa1353130 | 0.815202 | 1.043432e-51 | -8.615850e-47 |
| Msa0854840 | Msa1353130 | 0.811357 | 7.291086e-51 | -8.615850e-47 |
| Msa0865830 | Msa1353130 | 0.811710 | 6.110090e-51 | -8.615850e-47 |
| Msa0873880 | Msa1353130 | 0.800534 | 1.377841e-48 | -8.615850e-47 |
| Msa0896920 | Msa1353130 | 0.817046 | 4.039833e-52 | -8.615850e-47 |
| Msa0940780 | Msa1353130 | 0.807652 | 4.552397e-50 | -8.615850e-47 |
| Msa0947420 | Msa1353130 | 0.820710 | 5.939810e-53 | -8.615850e-47 |
| Msa0970790 | Msa1353130 | 0.801406 | 9.139835e-49 | -8.615850e-47 |
| Msa0975950 | Msa1353130 | 0.801824 | 7.503353e-49 | -8.615850e-47 |
| Msa0976400 | Msa1353130 | 0.800281 | 1.551489e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353130 | MtrunA17_Chr5g0394441 | 90.062 | 161 | 14 | 1 | 4 | 164 | 20 | 178 | 2.81e-107 | 305 |
| Msa1353130 | MtrunA17_Chr5g0394431 | 75.152 | 165 | 40 | 1 | 1 | 165 | 136 | 299 | 7.84e-86 | 255 |
| Msa1353130 | MtrunA17_Chr1g0205501 | 63.158 | 171 | 60 | 2 | 1 | 170 | 135 | 303 | 2.70e-72 | 221 |
| Msa1353130 | MtrunA17_Chr1g0205511 | 48.235 | 85 | 40 | 2 | 71 | 153 | 1 | 83 | 4.55e-20 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353130 | AT4G14930.1 | 50.898 | 167 | 74 | 3 | 8 | 170 | 149 | 311 | 6.08e-53 | 172 |
| Msa1353130 | AT4G14930.2 | 47.143 | 140 | 66 | 3 | 8 | 143 | 149 | 284 | 8.95e-40 | 138 |
Find 43 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATATCCGATGACATTAT+TGG | 0.278609 | tig0013076:-16624 | None:intergenic |
| CCATCACTCCATTATTATCT+TGG | 0.295714 | tig0013076:+17483 | Msa1353130:CDS |
| ATTTGTATGTCCAGGGTTAA+AGG | 0.329046 | tig0013076:+16283 | Msa1353130:CDS |
| ATTCTTTATATCAACCAGTA+TGG | 0.333966 | tig0013076:-16365 | None:intergenic |
| ATTACTGTTACTCCTCTTGC+TGG | 0.350649 | tig0013076:+17179 | Msa1353130:CDS |
| CATCACTCCATTATTATCTT+GGG | 0.353278 | tig0013076:+17484 | Msa1353130:CDS |
| TTGTAGCCATTCCTCAAAAT+AGG | 0.371094 | tig0013076:-17231 | None:intergenic |
| CTCGCAAATAAAAGATGTTC+AGG | 0.372141 | tig0013076:-16696 | None:intergenic |
| GGTAAAAGTATCTTTAAGAT+TGG | 0.377853 | tig0013076:+16570 | Msa1353130:CDS |
| ACCAGTATGGTGCTTATGAT+TGG | 0.395152 | tig0013076:-16352 | None:intergenic |
| TAAAGGCTATTTGTATGTCC+AGG | 0.416328 | tig0013076:+16275 | None:intergenic |
| TCCAATCATAAGCACCATAC+TGG | 0.425888 | tig0013076:+16351 | Msa1353130:CDS |
| AGCAGACTGCTGCTAGTGCT+TGG | 0.433566 | tig0013076:-17441 | None:intergenic |
| TTATGGTTAGCAACATCGTT+TGG | 0.448421 | tig0013076:-16427 | None:intergenic |
| TTATTGCCCCAAGATAATAA+TGG | 0.478496 | tig0013076:-17491 | None:intergenic |
| ATTACTCTTTCCTTTAACCC+TGG | 0.484185 | tig0013076:-16293 | None:intergenic |
| AAAGTATCTTTAAGATTGGA+TGG | 0.485897 | tig0013076:+16574 | Msa1353130:CDS |
| GCAGACTGCTGCTAGTGCTT+GGG | 0.488125 | tig0013076:-17440 | None:intergenic |
| GGGTTACAAGCTAACAAGGC+AGG | 0.490829 | tig0013076:+16548 | Msa1353130:intron |
| GCCTTCAAGAATGTGTAATC+CGG | 0.499913 | tig0013076:-17068 | None:intergenic |
| AGGTGTATCAGTATCAGTAT+TGG | 0.502952 | tig0013076:-16646 | None:intergenic |
| GATTACACATTCTTGAAGGC+GGG | 0.514349 | tig0013076:+17071 | Msa1353130:CDS |
| TCCGGATTACACATTCTTGA+AGG | 0.516264 | tig0013076:+17067 | Msa1353130:CDS |
| AAACGATGTTGCTAACCATA+AGG | 0.528344 | tig0013076:+16429 | Msa1353130:CDS |
| AAAGGCTATTTGTATGTCCA+GGG | 0.542859 | tig0013076:+16276 | None:intergenic |
| TGTACTTGATCATGACGATC+CGG | 0.547177 | tig0013076:+17049 | Msa1353130:CDS |
| GCACGAGAGAGACCAGCAAG+AGG | 0.562815 | tig0013076:-17191 | None:intergenic |
| CCAAGATAATAATGGAGTGA+TGG | 0.564660 | tig0013076:-17483 | None:intergenic |
| ATCACTCCATTATTATCTTG+GGG | 0.574179 | tig0013076:+17485 | Msa1353130:CDS |
| GATGGAGGCAAGTCACCTCT+CGG | 0.584180 | tig0013076:+16592 | Msa1353130:CDS |
| CAAGTCACCTCTCGGACAGA+AGG | 0.585680 | tig0013076:+16600 | Msa1353130:CDS |
| TAAAGAATCAAAGCTACCCT+GGG | 0.585985 | tig0013076:+16380 | Msa1353130:CDS |
| AGAAGGACCAATAATGTCAT+CGG | 0.592757 | tig0013076:+16617 | Msa1353130:CDS |
| ATAAAGAATCAAAGCTACCC+TGG | 0.599661 | tig0013076:+16379 | Msa1353130:CDS |
| AAAAGGGTTACAAGCTAACA+AGG | 0.613958 | tig0013076:+16544 | Msa1353130:intron |
| GGATTACACATTCTTGAAGG+CGG | 0.620421 | tig0013076:+17070 | Msa1353130:CDS |
| GGTTACAAGCTAACAAGGCA+GGG | 0.632843 | tig0013076:+16549 | Msa1353130:CDS |
| TCTTGCTGGTCTCTCTCGTG+CGG | 0.637394 | tig0013076:+17193 | Msa1353130:CDS |
| AGTGATGGCTTGCATAGCGG+AGG | 0.660288 | tig0013076:-17468 | None:intergenic |
| GCAGCAAGAGCAAAGTCGTG+TGG | 0.670936 | tig0013076:-16316 | None:intergenic |
| GTATCTTTAAGATTGGATGG+AGG | 0.682656 | tig0013076:+16577 | Msa1353130:CDS |
| TGGAGTGATGGCTTGCATAG+CGG | 0.682924 | tig0013076:-17471 | None:intergenic |
| TATTGGTCCTTCTGTCCGAG+AGG | 0.692237 | tig0013076:-16607 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTTTATAACTAATTTAT+TGG | + | tig0013076:16503-16522 | Msa1353130:intron | 10.0% |
| !!! | TAAGATTTTAAGTAAAAAAA+AGG | - | tig0013076:16745-16764 | None:intergenic | 10.0% |
| !!! | ATCTTTTATAACTAATTTAT+TGG | + | tig0013076:16503-16522 | Msa1353130:intron | 10.0% |
| !!! | TAAGATTTTAAGTAAAAAAA+AGG | - | tig0013076:16745-16764 | None:intergenic | 10.0% |
| !! | TTAAGTAAAAAAAAGGAAAA+AGG | - | tig0013076:16738-16757 | None:intergenic | 15.0% |
| !! | TATTACATCATTATTCATTA+GGG | - | tig0013076:16994-17013 | None:intergenic | 15.0% |
| !! | TTATTACATCATTATTCATT+AGG | - | tig0013076:16995-17014 | None:intergenic | 15.0% |
| !! | TTAAGTAAAAAAAAGGAAAA+AGG | - | tig0013076:16738-16757 | None:intergenic | 15.0% |
| !! | TATTACATCATTATTCATTA+GGG | - | tig0013076:16994-17013 | None:intergenic | 15.0% |
| !! | TTATTACATCATTATTCATT+AGG | - | tig0013076:16995-17014 | None:intergenic | 15.0% |
| !! | ACTTATTACAATATACCTTA+TGG | - | tig0013076:16447-16466 | None:intergenic | 20.0% |
| !! | CTATGTAGAACTATAAAAAA+GGG | - | tig0013076:16818-16837 | None:intergenic | 20.0% |
| !!! | AATAATCTCTTAACTTTTGT+AGG | + | tig0013076:17010-17029 | Msa1353130:intron | 20.0% |
| !! | ACTTATTACAATATACCTTA+TGG | - | tig0013076:16447-16466 | None:intergenic | 20.0% |
| !! | CTATGTAGAACTATAAAAAA+GGG | - | tig0013076:16818-16837 | None:intergenic | 20.0% |
| !!! | AATAATCTCTTAACTTTTGT+AGG | + | tig0013076:17010-17029 | Msa1353130:intron | 20.0% |
| ! | ATTCTTTATATCAACCAGTA+TGG | - | tig0013076:16368-16387 | None:intergenic | 25.0% |
| ! | TATTCAAAAAACATTTCCCA+GGG | - | tig0013076:16399-16418 | None:intergenic | 25.0% |
| ! | ATATTCAAAAAACATTTCCC+AGG | - | tig0013076:16400-16419 | None:intergenic | 25.0% |
| !!! | GGTAAAAGTATCTTTAAGAT+TGG | + | tig0013076:16570-16589 | Msa1353130:CDS | 25.0% |
| !!! | AAAGTATCTTTAAGATTGGA+TGG | + | tig0013076:16574-16593 | Msa1353130:CDS | 25.0% |
| ! | ACTGATACACCTAAAAATTA+TGG | + | tig0013076:16657-16676 | Msa1353130:CDS | 25.0% |
| ! | GCTATGTAGAACTATAAAAA+AGG | - | tig0013076:16819-16838 | None:intergenic | 25.0% |
| !! | TCTTAACTTTTGTAGGTAAA+AGG | + | tig0013076:17017-17036 | Msa1353130:intron | 25.0% |
| ! | ATTCTTTATATCAACCAGTA+TGG | - | tig0013076:16368-16387 | None:intergenic | 25.0% |
| ! | TATTCAAAAAACATTTCCCA+GGG | - | tig0013076:16399-16418 | None:intergenic | 25.0% |
| ! | ATATTCAAAAAACATTTCCC+AGG | - | tig0013076:16400-16419 | None:intergenic | 25.0% |
| !!! | GGTAAAAGTATCTTTAAGAT+TGG | + | tig0013076:16570-16589 | Msa1353130:CDS | 25.0% |
| !!! | AAAGTATCTTTAAGATTGGA+TGG | + | tig0013076:16574-16593 | Msa1353130:CDS | 25.0% |
| ! | ACTGATACACCTAAAAATTA+TGG | + | tig0013076:16657-16676 | Msa1353130:CDS | 25.0% |
| ! | GCTATGTAGAACTATAAAAA+AGG | - | tig0013076:16819-16838 | None:intergenic | 25.0% |
| !! | TCTTAACTTTTGTAGGTAAA+AGG | + | tig0013076:17017-17036 | Msa1353130:intron | 25.0% |
| TGTAGAACTATAAAAAAGGG+TGG | - | tig0013076:16815-16834 | None:intergenic | 30.0% | |
| CTAAACAATCCTAAACTACT+TGG | + | tig0013076:16934-16953 | Msa1353130:intron | 30.0% | |
| TCATTATTCATTAGGGAAAG+AGG | - | tig0013076:16987-17006 | None:intergenic | 30.0% | |
| CATCACTCCATTATTATCTT+GGG | + | tig0013076:17484-17503 | Msa1353130:CDS | 30.0% | |
| ATCACTCCATTATTATCTTG+GGG | + | tig0013076:17485-17504 | Msa1353130:CDS | 30.0% | |
| TTATTGCCCCAAGATAATAA+TGG | - | tig0013076:17494-17513 | None:intergenic | 30.0% | |
| TGTAGAACTATAAAAAAGGG+TGG | - | tig0013076:16815-16834 | None:intergenic | 30.0% | |
| CTAAACAATCCTAAACTACT+TGG | + | tig0013076:16934-16953 | Msa1353130:intron | 30.0% | |
| TCATTATTCATTAGGGAAAG+AGG | - | tig0013076:16987-17006 | None:intergenic | 30.0% | |
| CATCACTCCATTATTATCTT+GGG | + | tig0013076:17484-17503 | Msa1353130:CDS | 30.0% | |
| ATCACTCCATTATTATCTTG+GGG | + | tig0013076:17485-17504 | Msa1353130:CDS | 30.0% | |
| TTATTGCCCCAAGATAATAA+TGG | - | tig0013076:17494-17513 | None:intergenic | 30.0% | |
| ATTTGTATGTCCAGGGTTAA+AGG | + | tig0013076:16283-16302 | Msa1353130:CDS | 35.0% | |
| ATTACTCTTTCCTTTAACCC+TGG | - | tig0013076:16296-16315 | None:intergenic | 35.0% | |
| ATAAAGAATCAAAGCTACCC+TGG | + | tig0013076:16379-16398 | Msa1353130:CDS | 35.0% | |
| TAAAGAATCAAAGCTACCCT+GGG | + | tig0013076:16380-16399 | Msa1353130:CDS | 35.0% | |
| TTATGGTTAGCAACATCGTT+TGG | - | tig0013076:16430-16449 | None:intergenic | 35.0% | |
| AAACGATGTTGCTAACCATA+AGG | + | tig0013076:16429-16448 | Msa1353130:CDS | 35.0% | |
| AAAAGGGTTACAAGCTAACA+AGG | + | tig0013076:16544-16563 | Msa1353130:intron | 35.0% | |
| !! | GTATCTTTAAGATTGGATGG+AGG | + | tig0013076:16577-16596 | Msa1353130:CDS | 35.0% |
| AGAAGGACCAATAATGTCAT+CGG | + | tig0013076:16617-16636 | Msa1353130:CDS | 35.0% | |
| GTCATATCCGATGACATTAT+TGG | - | tig0013076:16627-16646 | None:intergenic | 35.0% | |
| AGGTGTATCAGTATCAGTAT+TGG | - | tig0013076:16649-16668 | None:intergenic | 35.0% | |
| ! | GATGACGTGCCATAATTTTT+AGG | - | tig0013076:16669-16688 | None:intergenic | 35.0% |
| CTCGCAAATAAAAGATGTTC+AGG | - | tig0013076:16699-16718 | None:intergenic | 35.0% | |
| !! | ACATCTTTTATTTGCGAGAG+AGG | + | tig0013076:16701-16720 | Msa1353130:CDS | 35.0% |
| GAATATGTTGTGATAGACTG+AGG | + | tig0013076:16853-16872 | Msa1353130:intron | 35.0% | |
| ACAATCCTAAACTACTTGGA+TGG | + | tig0013076:16938-16957 | Msa1353130:intron | 35.0% | |
| AATGTCCATCCAAGTAGTTT+AGG | - | tig0013076:16946-16965 | None:intergenic | 35.0% | |
| TTATTCATTAGGGAAAGAGG+AGG | - | tig0013076:16984-17003 | None:intergenic | 35.0% | |
| ! | AGATTGTCAGACCTATTTTG+AGG | + | tig0013076:17220-17239 | Msa1353130:CDS | 35.0% |
| TTGTAGCCATTCCTCAAAAT+AGG | - | tig0013076:17234-17253 | None:intergenic | 35.0% | |
| ATGCAAATTCAACTAGTGCT+AGG | - | tig0013076:17351-17370 | None:intergenic | 35.0% | |
| ! | CCAAGATAATAATGGAGTGA+TGG | - | tig0013076:17486-17505 | None:intergenic | 35.0% |
| CCATCACTCCATTATTATCT+TGG | + | tig0013076:17483-17502 | Msa1353130:CDS | 35.0% | |
| ATTTGTATGTCCAGGGTTAA+AGG | + | tig0013076:16283-16302 | Msa1353130:CDS | 35.0% | |
| ATTACTCTTTCCTTTAACCC+TGG | - | tig0013076:16296-16315 | None:intergenic | 35.0% | |
| ATAAAGAATCAAAGCTACCC+TGG | + | tig0013076:16379-16398 | Msa1353130:CDS | 35.0% | |
| TAAAGAATCAAAGCTACCCT+GGG | + | tig0013076:16380-16399 | Msa1353130:CDS | 35.0% | |
| TTATGGTTAGCAACATCGTT+TGG | - | tig0013076:16430-16449 | None:intergenic | 35.0% | |
| AAACGATGTTGCTAACCATA+AGG | + | tig0013076:16429-16448 | Msa1353130:CDS | 35.0% | |
| AAAAGGGTTACAAGCTAACA+AGG | + | tig0013076:16544-16563 | Msa1353130:intron | 35.0% | |
| !! | GTATCTTTAAGATTGGATGG+AGG | + | tig0013076:16577-16596 | Msa1353130:CDS | 35.0% |
| AGAAGGACCAATAATGTCAT+CGG | + | tig0013076:16617-16636 | Msa1353130:CDS | 35.0% | |
| GTCATATCCGATGACATTAT+TGG | - | tig0013076:16627-16646 | None:intergenic | 35.0% | |
| AGGTGTATCAGTATCAGTAT+TGG | - | tig0013076:16649-16668 | None:intergenic | 35.0% | |
| ! | GATGACGTGCCATAATTTTT+AGG | - | tig0013076:16669-16688 | None:intergenic | 35.0% |
| CTCGCAAATAAAAGATGTTC+AGG | - | tig0013076:16699-16718 | None:intergenic | 35.0% | |
| !! | ACATCTTTTATTTGCGAGAG+AGG | + | tig0013076:16701-16720 | Msa1353130:CDS | 35.0% |
| GAATATGTTGTGATAGACTG+AGG | + | tig0013076:16853-16872 | Msa1353130:intron | 35.0% | |
| ACAATCCTAAACTACTTGGA+TGG | + | tig0013076:16938-16957 | Msa1353130:intron | 35.0% | |
| AATGTCCATCCAAGTAGTTT+AGG | - | tig0013076:16946-16965 | None:intergenic | 35.0% | |
| TTATTCATTAGGGAAAGAGG+AGG | - | tig0013076:16984-17003 | None:intergenic | 35.0% | |
| ! | AGATTGTCAGACCTATTTTG+AGG | + | tig0013076:17220-17239 | Msa1353130:CDS | 35.0% |
| TTGTAGCCATTCCTCAAAAT+AGG | - | tig0013076:17234-17253 | None:intergenic | 35.0% | |
| ATGCAAATTCAACTAGTGCT+AGG | - | tig0013076:17351-17370 | None:intergenic | 35.0% | |
| ! | CCAAGATAATAATGGAGTGA+TGG | - | tig0013076:17486-17505 | None:intergenic | 35.0% |
| CCATCACTCCATTATTATCT+TGG | + | tig0013076:17483-17502 | Msa1353130:CDS | 35.0% | |
| TCCAATCATAAGCACCATAC+TGG | + | tig0013076:16351-16370 | Msa1353130:CDS | 40.0% | |
| ACCAGTATGGTGCTTATGAT+TGG | - | tig0013076:16355-16374 | None:intergenic | 40.0% | |
| !! | CTTTTATTTGCGAGAGAGGT+AGG | + | tig0013076:16705-16724 | Msa1353130:intron | 40.0% |
| ! | GTTTAGTCTTCCAGAGAACT+TGG | - | tig0013076:16920-16939 | None:intergenic | 40.0% |
| TGTACTTGATCATGACGATC+CGG | + | tig0013076:17049-17068 | Msa1353130:CDS | 40.0% | |
| TCCGGATTACACATTCTTGA+AGG | + | tig0013076:17067-17086 | Msa1353130:CDS | 40.0% | |
| GCCTTCAAGAATGTGTAATC+CGG | - | tig0013076:17071-17090 | None:intergenic | 40.0% | |
| GGATTACACATTCTTGAAGG+CGG | + | tig0013076:17070-17089 | Msa1353130:CDS | 40.0% | |
| GATTACACATTCTTGAAGGC+GGG | + | tig0013076:17071-17090 | Msa1353130:CDS | 40.0% | |
| ATTACTGTTACTCCTCTTGC+TGG | + | tig0013076:17179-17198 | Msa1353130:CDS | 40.0% | |
| !! | GTCAGACCTATTTTGAGGAA+TGG | + | tig0013076:17225-17244 | Msa1353130:CDS | 40.0% |
| ATCTAGATTCTCGACTAGCA+TGG | - | tig0013076:17382-17401 | None:intergenic | 40.0% | |
| TCCAATCATAAGCACCATAC+TGG | + | tig0013076:16351-16370 | Msa1353130:CDS | 40.0% | |
| ACCAGTATGGTGCTTATGAT+TGG | - | tig0013076:16355-16374 | None:intergenic | 40.0% | |
| !! | CTTTTATTTGCGAGAGAGGT+AGG | + | tig0013076:16705-16724 | Msa1353130:intron | 40.0% |
| ! | GTTTAGTCTTCCAGAGAACT+TGG | - | tig0013076:16920-16939 | None:intergenic | 40.0% |
| TGTACTTGATCATGACGATC+CGG | + | tig0013076:17049-17068 | Msa1353130:CDS | 40.0% | |
| TCCGGATTACACATTCTTGA+AGG | + | tig0013076:17067-17086 | Msa1353130:CDS | 40.0% | |
| GCCTTCAAGAATGTGTAATC+CGG | - | tig0013076:17071-17090 | None:intergenic | 40.0% | |
| GGATTACACATTCTTGAAGG+CGG | + | tig0013076:17070-17089 | Msa1353130:CDS | 40.0% | |
| GATTACACATTCTTGAAGGC+GGG | + | tig0013076:17071-17090 | Msa1353130:CDS | 40.0% | |
| ATTACTGTTACTCCTCTTGC+TGG | + | tig0013076:17179-17198 | Msa1353130:CDS | 40.0% | |
| !! | GTCAGACCTATTTTGAGGAA+TGG | + | tig0013076:17225-17244 | Msa1353130:CDS | 40.0% |
| ATCTAGATTCTCGACTAGCA+TGG | - | tig0013076:17382-17401 | None:intergenic | 40.0% | |
| ! | TATTGGTTGTCGTCTGTGCA+TGG | + | tig0013076:16520-16539 | Msa1353130:intron | 45.0% |
| TGTCGTCTGTGCATGGAAAA+AGG | + | tig0013076:16527-16546 | Msa1353130:intron | 45.0% | |
| GTCGTCTGTGCATGGAAAAA+GGG | + | tig0013076:16528-16547 | Msa1353130:intron | 45.0% | |
| GGTTACAAGCTAACAAGGCA+GGG | + | tig0013076:16549-16568 | Msa1353130:CDS | 45.0% | |
| AAAGGGTGGAGTTCATCTGA+AGG | - | tig0013076:16801-16820 | None:intergenic | 45.0% | |
| !! | GAAGTTGATGCCAAGTTCTC+TGG | + | tig0013076:16907-16926 | Msa1353130:intron | 45.0% |
| TATAAAGCTTCCGACGAGAG+GGG | - | tig0013076:17269-17288 | None:intergenic | 45.0% | |
| CTATAAAGCTTCCGACGAGA+GGG | - | tig0013076:17270-17289 | None:intergenic | 45.0% | |
| ACTATAAAGCTTCCGACGAG+AGG | - | tig0013076:17271-17290 | None:intergenic | 45.0% | |
| ! | TATTGGTTGTCGTCTGTGCA+TGG | + | tig0013076:16520-16539 | Msa1353130:intron | 45.0% |
| TGTCGTCTGTGCATGGAAAA+AGG | + | tig0013076:16527-16546 | Msa1353130:intron | 45.0% | |
| GTCGTCTGTGCATGGAAAAA+GGG | + | tig0013076:16528-16547 | Msa1353130:intron | 45.0% | |
| GGTTACAAGCTAACAAGGCA+GGG | + | tig0013076:16549-16568 | Msa1353130:CDS | 45.0% | |
| AAAGGGTGGAGTTCATCTGA+AGG | - | tig0013076:16801-16820 | None:intergenic | 45.0% | |
| !! | GAAGTTGATGCCAAGTTCTC+TGG | + | tig0013076:16907-16926 | Msa1353130:intron | 45.0% |
| TATAAAGCTTCCGACGAGAG+GGG | - | tig0013076:17269-17288 | None:intergenic | 45.0% | |
| CTATAAAGCTTCCGACGAGA+GGG | - | tig0013076:17270-17289 | None:intergenic | 45.0% | |
| ACTATAAAGCTTCCGACGAG+AGG | - | tig0013076:17271-17290 | None:intergenic | 45.0% | |
| GGGTTACAAGCTAACAAGGC+AGG | + | tig0013076:16548-16567 | Msa1353130:intron | 50.0% | |
| TATTGGTCCTTCTGTCCGAG+AGG | - | tig0013076:16610-16629 | None:intergenic | 50.0% | |
| ! | TGGAGTGATGGCTTGCATAG+CGG | - | tig0013076:17474-17493 | None:intergenic | 50.0% |
| GGGTTACAAGCTAACAAGGC+AGG | + | tig0013076:16548-16567 | Msa1353130:intron | 50.0% | |
| TATTGGTCCTTCTGTCCGAG+AGG | - | tig0013076:16610-16629 | None:intergenic | 50.0% | |
| ! | TGGAGTGATGGCTTGCATAG+CGG | - | tig0013076:17474-17493 | None:intergenic | 50.0% |
| GCAGCAAGAGCAAAGTCGTG+TGG | - | tig0013076:16319-16338 | None:intergenic | 55.0% | |
| GATGGAGGCAAGTCACCTCT+CGG | + | tig0013076:16592-16611 | Msa1353130:CDS | 55.0% | |
| CAAGTCACCTCTCGGACAGA+AGG | + | tig0013076:16600-16619 | Msa1353130:CDS | 55.0% | |
| AAGAGGAGGCGAGGAGGATT+AGG | - | tig0013076:16970-16989 | None:intergenic | 55.0% | |
| CATTAGGGAAAGAGGAGGCG+AGG | - | tig0013076:16979-16998 | None:intergenic | 55.0% | |
| ! | TCTTGCTGGTCTCTCTCGTG+CGG | + | tig0013076:17193-17212 | Msa1353130:CDS | 55.0% |
| GCAGACTGCTGCTAGTGCTT+GGG | - | tig0013076:17443-17462 | None:intergenic | 55.0% | |
| AGCAGACTGCTGCTAGTGCT+TGG | - | tig0013076:17444-17463 | None:intergenic | 55.0% | |
| ! | AGTGATGGCTTGCATAGCGG+AGG | - | tig0013076:17471-17490 | None:intergenic | 55.0% |
| GCAGCAAGAGCAAAGTCGTG+TGG | - | tig0013076:16319-16338 | None:intergenic | 55.0% | |
| GATGGAGGCAAGTCACCTCT+CGG | + | tig0013076:16592-16611 | Msa1353130:CDS | 55.0% | |
| CAAGTCACCTCTCGGACAGA+AGG | + | tig0013076:16600-16619 | Msa1353130:CDS | 55.0% | |
| AAGAGGAGGCGAGGAGGATT+AGG | - | tig0013076:16970-16989 | None:intergenic | 55.0% | |
| CATTAGGGAAAGAGGAGGCG+AGG | - | tig0013076:16979-16998 | None:intergenic | 55.0% | |
| ! | TCTTGCTGGTCTCTCTCGTG+CGG | + | tig0013076:17193-17212 | Msa1353130:CDS | 55.0% |
| GCAGACTGCTGCTAGTGCTT+GGG | - | tig0013076:17443-17462 | None:intergenic | 55.0% | |
| AGCAGACTGCTGCTAGTGCT+TGG | - | tig0013076:17444-17463 | None:intergenic | 55.0% | |
| ! | AGTGATGGCTTGCATAGCGG+AGG | - | tig0013076:17471-17490 | None:intergenic | 55.0% |
| TAGGGAAAGAGGAGGCGAGG+AGG | - | tig0013076:16976-16995 | None:intergenic | 60.0% | |
| GCACGAGAGAGACCAGCAAG+AGG | - | tig0013076:17194-17213 | None:intergenic | 60.0% | |
| TGTCCCCAAACCCCTCTCGT+CGG | + | tig0013076:17256-17275 | Msa1353130:intron | 60.0% | |
| CTTCCGACGAGAGGGGTTTG+GGG | - | tig0013076:17262-17281 | None:intergenic | 60.0% | |
| GCTTCCGACGAGAGGGGTTT+GGG | - | tig0013076:17263-17282 | None:intergenic | 60.0% | |
| AGCTTCCGACGAGAGGGGTT+TGG | - | tig0013076:17264-17283 | None:intergenic | 60.0% | |
| TAGGGAAAGAGGAGGCGAGG+AGG | - | tig0013076:16976-16995 | None:intergenic | 60.0% | |
| GCACGAGAGAGACCAGCAAG+AGG | - | tig0013076:17194-17213 | None:intergenic | 60.0% | |
| TGTCCCCAAACCCCTCTCGT+CGG | + | tig0013076:17256-17275 | Msa1353130:intron | 60.0% | |
| CTTCCGACGAGAGGGGTTTG+GGG | - | tig0013076:17262-17281 | None:intergenic | 60.0% | |
| GCTTCCGACGAGAGGGGTTT+GGG | - | tig0013076:17263-17282 | None:intergenic | 60.0% | |
| AGCTTCCGACGAGAGGGGTT+TGG | - | tig0013076:17264-17283 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0013076 | gene | 16280 | 17539 | 16280 | ID=Msa1353130;Name=Msa1353130 |
| tig0013076 | mRNA | 16280 | 17539 | 16280 | ID=Msa1353130-mRNA-1;Parent=Msa1353130;Name=Msa1353130-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|0.75|0.6|5|0|196 |
| tig0013076 | exon | 16280 | 16450 | 16280 | ID=Msa1353130-mRNA-1:exon:8530;Parent=Msa1353130-mRNA-1 |
| tig0013076 | exon | 16549 | 16722 | 16549 | ID=Msa1353130-mRNA-1:exon:8531;Parent=Msa1353130-mRNA-1 |
| tig0013076 | exon | 17032 | 17097 | 17032 | ID=Msa1353130-mRNA-1:exon:8532;Parent=Msa1353130-mRNA-1 |
| tig0013076 | exon | 17179 | 17256 | 17179 | ID=Msa1353130-mRNA-1:exon:8533;Parent=Msa1353130-mRNA-1 |
| tig0013076 | exon | 17438 | 17539 | 17438 | ID=Msa1353130-mRNA-1:exon:8534;Parent=Msa1353130-mRNA-1 |
| tig0013076 | CDS | 16280 | 16450 | 16280 | ID=Msa1353130-mRNA-1:cds;Parent=Msa1353130-mRNA-1 |
| tig0013076 | CDS | 16549 | 16722 | 16549 | ID=Msa1353130-mRNA-1:cds;Parent=Msa1353130-mRNA-1 |
| tig0013076 | CDS | 17032 | 17097 | 17032 | ID=Msa1353130-mRNA-1:cds;Parent=Msa1353130-mRNA-1 |
| tig0013076 | CDS | 17179 | 17256 | 17179 | ID=Msa1353130-mRNA-1:cds;Parent=Msa1353130-mRNA-1 |
| tig0013076 | CDS | 17438 | 17539 | 17438 | ID=Msa1353130-mRNA-1:cds;Parent=Msa1353130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
