Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032770 | sp|I6YGS0|EPHA_MYCTU | 35.562 | 329 | 189 | 7 | 1 | 319 | 1 | 316 | 4.55e-67 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011060 | Msa0032770 | -0.801847 | 7.423091e-49 | -8.615850e-47 |
| Msa0032770 | Msa0036560 | -0.806007 | 1.014020e-49 | -8.615850e-47 |
| Msa0032770 | Msa0040210 | 0.821886 | 3.181550e-53 | -8.615850e-47 |
| Msa0032770 | Msa0048410 | -0.801698 | 7.965329e-49 | -8.615850e-47 |
| Msa0032770 | Msa0059420 | 0.807061 | 6.074362e-50 | -8.615850e-47 |
| Msa0032770 | Msa0059880 | 0.844300 | 8.231523e-59 | -8.615850e-47 |
| Msa0032770 | Msa0064990 | 0.819247 | 1.284108e-52 | -8.615850e-47 |
| Msa0032770 | Msa0072030 | 0.809205 | 2.122607e-50 | -8.615850e-47 |
| Msa0032770 | Msa0081700 | -0.807544 | 4.799136e-50 | -8.615850e-47 |
| Msa0032770 | Msa0099090 | -0.811533 | 6.675010e-51 | -8.615850e-47 |
| Msa0032770 | Msa0104090 | 0.805875 | 1.080454e-49 | -8.615850e-47 |
| Msa0032770 | Msa0114610 | 0.849292 | 3.551236e-60 | -8.615850e-47 |
| Msa0032770 | Msa0138340 | -0.802180 | 6.341356e-49 | -8.615850e-47 |
| Msa0032770 | Msa0140270 | 0.827878 | 1.226271e-54 | -8.615850e-47 |
| Msa0032770 | Msa0150910 | 0.814783 | 1.292111e-51 | -8.615850e-47 |
| Msa0032770 | Msa0163340 | 0.802966 | 4.365128e-49 | -8.615850e-47 |
| Msa0032770 | Msa0172890 | 0.983957 | 3.483056e-159 | -8.615850e-47 |
| Msa0032770 | Msa0190670 | 0.819953 | 8.859972e-53 | -8.615850e-47 |
| Msa0032770 | Msa0190890 | 0.809039 | 2.303948e-50 | -8.615850e-47 |
| Msa0032770 | Msa0194750 | -0.808909 | 2.456244e-50 | -8.615850e-47 |
| Msa0032770 | Msa0210790 | 0.824146 | 9.455899e-54 | -8.615850e-47 |
| Msa0032770 | Msa0210850 | 0.822212 | 2.672933e-53 | -8.615850e-47 |
| Msa0032770 | Msa0214800 | 0.805900 | 1.067784e-49 | -8.615850e-47 |
| Msa0032770 | Msa0225070 | -0.813309 | 2.732492e-51 | -8.615850e-47 |
| Msa0032770 | Msa0233210 | 0.815493 | 8.985567e-52 | -8.615850e-47 |
| Msa0032770 | Msa0236690 | -0.822918 | 1.831683e-53 | -8.615850e-47 |
| Msa0032770 | Msa0265060 | 0.800109 | 1.681480e-48 | -8.615850e-47 |
| Msa0032770 | Msa0266140 | -0.810853 | 9.375929e-51 | -8.615850e-47 |
| Msa0032770 | Msa0269660 | -0.823856 | 1.105414e-53 | -8.615850e-47 |
| Msa0032770 | Msa0270730 | -0.805221 | 1.482294e-49 | -8.615850e-47 |
| Msa0032770 | Msa0274250 | 0.809105 | 2.230796e-50 | -8.615850e-47 |
| Msa0032770 | Msa0274260 | 0.818910 | 1.531554e-52 | -8.615850e-47 |
| Msa0032770 | Msa0304060 | -0.817229 | 3.673877e-52 | -8.615850e-47 |
| Msa0032770 | Msa0328870 | 0.805971 | 1.031826e-49 | -8.615850e-47 |
| Msa0032770 | Msa0349910 | 0.811898 | 5.561433e-51 | -8.615850e-47 |
| Msa0032770 | Msa0368620 | 0.809104 | 2.231031e-50 | -8.615850e-47 |
| Msa0032770 | Msa0375030 | 0.824253 | 8.923101e-54 | -8.615850e-47 |
| Msa0032770 | Msa0389710 | 0.804566 | 2.031089e-49 | -8.615850e-47 |
| Msa0032770 | Msa0396870 | 0.801329 | 9.477018e-49 | -8.615850e-47 |
| Msa0032770 | Msa0414480 | 0.801983 | 6.958583e-49 | -8.615850e-47 |
| Msa0032770 | Msa0415010 | 0.802653 | 5.065854e-49 | -8.615850e-47 |
| Msa0032770 | Msa0421080 | 0.804046 | 2.606516e-49 | -8.615850e-47 |
| Msa0032770 | Msa0430320 | 0.804702 | 1.902606e-49 | -8.615850e-47 |
| Msa0032770 | Msa0430460 | 0.818934 | 1.512729e-52 | -8.615850e-47 |
| Msa0032770 | Msa0470440 | 0.806228 | 9.106863e-50 | -8.615850e-47 |
| Msa0032770 | Msa0480260 | 0.804372 | 2.229404e-49 | -8.615850e-47 |
| Msa0032770 | Msa0491770 | 0.807786 | 4.264278e-50 | -8.615850e-47 |
| Msa0032770 | Msa0522280 | 0.805628 | 1.217643e-49 | -8.615850e-47 |
| Msa0032770 | Msa0537210 | 0.806426 | 8.274686e-50 | -8.615850e-47 |
| Msa0032770 | Msa0538050 | -0.835168 | 1.963296e-56 | -8.615850e-47 |
| Msa0032770 | Msa0559440 | -0.802942 | 4.415105e-49 | -8.615850e-47 |
| Msa0032770 | Msa0559640 | -0.809936 | 1.478645e-50 | -8.615850e-47 |
| Msa0032770 | Msa0580210 | 0.807820 | 4.192945e-50 | -8.615850e-47 |
| Msa0032770 | Msa0583270 | -0.800222 | 1.594596e-48 | -8.615850e-47 |
| Msa0032770 | Msa0585720 | -0.816662 | 4.926473e-52 | -8.615850e-47 |
| Msa0032770 | Msa0591490 | 0.801087 | 1.062329e-48 | -8.615850e-47 |
| Msa0032770 | Msa0602050 | 0.819221 | 1.301531e-52 | -8.615850e-47 |
| Msa0032770 | Msa0625900 | -0.812504 | 4.101347e-51 | -8.615850e-47 |
| Msa0032770 | Msa0643190 | 0.814265 | 1.682160e-51 | -8.615850e-47 |
| Msa0032770 | Msa0663580 | -0.808952 | 2.405505e-50 | -8.615850e-47 |
| Msa0032770 | Msa0663690 | -0.811081 | 8.366086e-51 | -8.615850e-47 |
| Msa0032770 | Msa0670360 | 0.803948 | 2.731461e-49 | -8.615850e-47 |
| Msa0032770 | Msa0671640 | 0.800506 | 1.395823e-48 | -8.615850e-47 |
| Msa0032770 | Msa0698110 | 0.809014 | 2.332239e-50 | -8.615850e-47 |
| Msa0032770 | Msa0705520 | 0.812570 | 3.967194e-51 | -8.615850e-47 |
| Msa0032770 | Msa0711240 | 0.803195 | 3.914254e-49 | -8.615850e-47 |
| Msa0032770 | Msa0727230 | 0.805907 | 1.064192e-49 | -8.615850e-47 |
| Msa0032770 | Msa0727480 | 0.825965 | 3.514379e-54 | -8.615850e-47 |
| Msa0032770 | Msa0742200 | 0.807779 | 4.278243e-50 | -8.615850e-47 |
| Msa0032770 | Msa0742690 | -0.822768 | 1.985336e-53 | -8.615850e-47 |
| Msa0032770 | Msa0750790 | 0.804056 | 2.593753e-49 | -8.615850e-47 |
| Msa0032770 | Msa0761830 | 0.800115 | 1.676779e-48 | -8.615850e-47 |
| Msa0032770 | Msa0768670 | 0.826018 | 3.413884e-54 | -8.615850e-47 |
| Msa0032770 | Msa0768720 | 0.815104 | 1.097014e-51 | -8.615850e-47 |
| Msa0032770 | Msa0777070 | 0.814575 | 1.436602e-51 | -8.615850e-47 |
| Msa0032770 | Msa0779830 | -0.811694 | 6.159737e-51 | -8.615850e-47 |
| Msa0032770 | Msa0787860 | 0.802614 | 5.160475e-49 | -8.615850e-47 |
| Msa0032770 | Msa0794240 | 0.801443 | 8.981434e-49 | -8.615850e-47 |
| Msa0032770 | Msa0814160 | 0.832514 | 9.052472e-56 | -8.615850e-47 |
| Msa0032770 | Msa0814230 | 0.805327 | 1.408260e-49 | -8.615850e-47 |
| Msa0032770 | Msa0823380 | 0.811890 | 5.581931e-51 | -8.615850e-47 |
| Msa0032770 | Msa0826370 | 0.808476 | 3.039469e-50 | -8.615850e-47 |
| Msa0032770 | Msa0827560 | -0.814976 | 1.170664e-51 | -8.615850e-47 |
| Msa0032770 | Msa0828350 | 0.807862 | 4.107896e-50 | -8.615850e-47 |
| Msa0032770 | Msa0842180 | 0.803607 | 3.215038e-49 | -8.615850e-47 |
| Msa0032770 | Msa0854840 | 0.825136 | 5.526108e-54 | -8.615850e-47 |
| Msa0032770 | Msa0861400 | -0.812344 | 4.444969e-51 | -8.615850e-47 |
| Msa0032770 | Msa0862750 | -0.803991 | 2.676326e-49 | -8.615850e-47 |
| Msa0032770 | Msa0864160 | 0.812231 | 4.704170e-51 | -8.615850e-47 |
| Msa0032770 | Msa0870220 | -0.807406 | 5.134754e-50 | -8.615850e-47 |
| Msa0032770 | Msa0871420 | 0.808526 | 2.965552e-50 | -8.615850e-47 |
| Msa0032770 | Msa0874750 | 0.808604 | 2.855000e-50 | -8.615850e-47 |
| Msa0032770 | Msa0883640 | 0.804299 | 2.308878e-49 | -8.615850e-47 |
| Msa0032770 | Msa0903460 | -0.817419 | 3.329728e-52 | -8.615850e-47 |
| Msa0032770 | Msa0906100 | -0.809246 | 2.080424e-50 | -8.615850e-47 |
| Msa0032770 | Msa0906680 | 0.807681 | 4.488904e-50 | -8.615850e-47 |
| Msa0032770 | Msa0910830 | 0.818556 | 1.842884e-52 | -8.615850e-47 |
| Msa0032770 | Msa0913550 | 0.805423 | 1.344397e-49 | -8.615850e-47 |
| Msa0032770 | Msa0932050 | -0.802398 | 5.718315e-49 | -8.615850e-47 |
| Msa0032770 | Msa0935930 | -0.813832 | 2.096644e-51 | -8.615850e-47 |
| Msa0032770 | Msa0936630 | 0.811128 | 8.173227e-51 | -8.615850e-47 |
| Msa0032770 | Msa0938150 | -0.806754 | 7.053085e-50 | -8.615850e-47 |
| Msa0032770 | Msa0947420 | 0.805022 | 1.631259e-49 | -8.615850e-47 |
| Msa0032770 | Msa0960090 | 0.806837 | 6.775840e-50 | -8.615850e-47 |
| Msa0032770 | Msa0967900 | -0.817813 | 2.713869e-52 | -8.615850e-47 |
| Msa0032770 | Msa0976400 | 0.802391 | 5.736094e-49 | -8.615850e-47 |
| Msa0032770 | Msa0985700 | 0.803514 | 3.362578e-49 | -8.615850e-47 |
| Msa0032770 | Msa1006170 | 0.824203 | 9.168096e-54 | -8.615850e-47 |
| Msa0032770 | Msa1018210 | -0.803504 | 3.378668e-49 | -8.615850e-47 |
| Msa0032770 | Msa1021620 | 0.812002 | 5.278845e-51 | -8.615850e-47 |
| Msa0032770 | Msa1024350 | 0.838153 | 3.405197e-57 | -8.615850e-47 |
| Msa0032770 | Msa1039150 | -0.804603 | 1.995266e-49 | -8.615850e-47 |
| Msa0032770 | Msa1041260 | 0.802147 | 6.440029e-49 | -8.615850e-47 |
| Msa0032770 | Msa1061670 | 0.817227 | 3.677772e-52 | -8.615850e-47 |
| Msa0032770 | Msa1070630 | -0.803471 | 3.431857e-49 | -8.615850e-47 |
| Msa0032770 | Msa1087370 | 0.805143 | 1.539287e-49 | -8.615850e-47 |
| Msa0032770 | Msa1087380 | 0.831369 | 1.735864e-55 | -8.615850e-47 |
| Msa0032770 | Msa1093190 | -0.801958 | 7.041112e-49 | -8.615850e-47 |
| Msa0032770 | Msa1106960 | 0.811276 | 7.592760e-51 | -8.615850e-47 |
| Msa0032770 | Msa1109880 | 0.808862 | 2.514262e-50 | -8.615850e-47 |
| Msa0032770 | Msa1109890 | 0.812575 | 3.957602e-51 | -8.615850e-47 |
| Msa0032770 | Msa1165660 | 0.803796 | 2.938645e-49 | -8.615850e-47 |
| Msa0032770 | Msa1174280 | 0.802232 | 6.184843e-49 | -8.615850e-47 |
| Msa0032770 | Msa1179340 | 0.802600 | 5.194620e-49 | -8.615850e-47 |
| Msa0032770 | Msa1214960 | 0.801585 | 8.398806e-49 | -8.615850e-47 |
| Msa0032770 | Msa1228600 | -0.802612 | 5.164846e-49 | -8.615850e-47 |
| Msa0032770 | Msa1233090 | 0.811552 | 6.611206e-51 | -8.615850e-47 |
| Msa0032770 | Msa1256730 | 0.813538 | 2.433045e-51 | -8.615850e-47 |
| Msa0032770 | Msa1275220 | 0.816443 | 5.515727e-52 | -8.615850e-47 |
| Msa0032770 | Msa1298090 | 0.805085 | 1.582305e-49 | -8.615850e-47 |
| Msa0032770 | Msa1313720 | 0.825949 | 3.545208e-54 | -8.615850e-47 |
| Msa0032770 | Msa1323030 | 0.814317 | 1.638442e-51 | -8.615850e-47 |
| Msa0032770 | Msa1323260 | -0.806390 | 8.418093e-50 | -8.615850e-47 |
| Msa0032770 | Msa1348860 | -0.802888 | 4.529282e-49 | -8.615850e-47 |
| Msa0032770 | Msa1349420 | 0.831610 | 1.514099e-55 | -8.615850e-47 |
| Msa0032770 | Msa1371540 | -0.809306 | 2.019751e-50 | -8.615850e-47 |
| Msa0032770 | Msa1373560 | 0.806386 | 8.434879e-50 | -8.615850e-47 |
| Msa0032770 | Msa1377520 | 0.804970 | 1.672625e-49 | -8.615850e-47 |
| Msa0032770 | Msa1381300 | -0.804778 | 1.834656e-49 | -8.615850e-47 |
| Msa0032770 | Msa1382100 | -0.824059 | 9.907139e-54 | -8.615850e-47 |
| Msa0032770 | Msa1419700 | 0.808894 | 2.475289e-50 | -8.615850e-47 |
| Msa0032770 | Msa1421130 | 0.802427 | 5.638582e-49 | -8.615850e-47 |
| Msa0032770 | Msa1449770 | 0.805417 | 1.348289e-49 | -8.615850e-47 |
| Msa0032770 | Msa1459610 | 0.802293 | 6.009891e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032770 | MtrunA17_Chr4g0000111 | 97.516 | 322 | 8 | 0 | 1 | 322 | 1 | 322 | 0.0 | 653 |
| Msa0032770 | MtrunA17_Chr7g0272531 | 72.446 | 323 | 84 | 3 | 1 | 322 | 31 | 349 | 0.0 | 504 |
| Msa0032770 | MtrunA17_Chr7g0272501 | 72.755 | 323 | 83 | 3 | 1 | 322 | 1 | 319 | 0.0 | 503 |
| Msa0032770 | MtrunA17_Chr7g0272481 | 73.065 | 323 | 82 | 3 | 1 | 322 | 1 | 319 | 1.08e-180 | 501 |
| Msa0032770 | MtrunA17_Chr7g0272171 | 72.136 | 323 | 85 | 3 | 1 | 322 | 1 | 319 | 5.25e-179 | 497 |
| Msa0032770 | MtrunA17_Chr7g0272181 | 70.898 | 323 | 89 | 3 | 1 | 322 | 1 | 319 | 5.71e-177 | 492 |
| Msa0032770 | MtrunA17_Chr7g0272431 | 68.111 | 323 | 98 | 3 | 1 | 322 | 1 | 319 | 1.68e-166 | 466 |
| Msa0032770 | MtrunA17_Chr7g0272441 | 67.492 | 323 | 100 | 3 | 1 | 322 | 1 | 319 | 2.26e-163 | 457 |
| Msa0032770 | MtrunA17_Chr7g0272451 | 68.111 | 323 | 95 | 5 | 1 | 322 | 1 | 316 | 2.05e-162 | 455 |
| Msa0032770 | MtrunA17_Chr7g0269471 | 57.143 | 322 | 133 | 3 | 1 | 322 | 1 | 317 | 1.54e-133 | 382 |
| Msa0032770 | MtrunA17_Chr4g0067581 | 57.099 | 324 | 132 | 4 | 1 | 322 | 37 | 355 | 5.89e-133 | 382 |
| Msa0032770 | MtrunA17_Chr1g0192291 | 98.101 | 158 | 3 | 0 | 1 | 158 | 1 | 158 | 2.50e-115 | 330 |
| Msa0032770 | MtrunA17_Chr8g0372491 | 44.410 | 322 | 172 | 5 | 1 | 322 | 3 | 317 | 7.36e-94 | 281 |
| Msa0032770 | MtrunA17_Chr7g0272471 | 76.101 | 159 | 34 | 2 | 1 | 158 | 1 | 156 | 9.74e-86 | 255 |
| Msa0032770 | MtrunA17_Chr2g0324141 | 36.923 | 325 | 186 | 8 | 1 | 321 | 1 | 310 | 1.04e-62 | 201 |
| Msa0032770 | MtrunA17_Chr2g0324161 | 36.000 | 325 | 189 | 8 | 1 | 321 | 1 | 310 | 2.87e-61 | 197 |
| Msa0032770 | MtrunA17_Chr4g0047681 | 35.152 | 330 | 184 | 9 | 1 | 321 | 1 | 309 | 5.82e-60 | 194 |
| Msa0032770 | MtrunA17_Chr4g0047701 | 34.462 | 325 | 193 | 7 | 1 | 321 | 1 | 309 | 1.05e-59 | 193 |
| Msa0032770 | MtrunA17_Chr3g0086531 | 69.737 | 76 | 20 | 1 | 79 | 154 | 1 | 73 | 3.16e-32 | 115 |
| Msa0032770 | MtrunA17_Chr7g0272461 | 55.556 | 108 | 43 | 3 | 179 | 284 | 1 | 105 | 1.09e-31 | 115 |
| Msa0032770 | MtrunA17_Chr7g0272391 | 46.957 | 115 | 40 | 2 | 164 | 278 | 2 | 95 | 1.31e-24 | 96.3 |
| Msa0032770 | MtrunA17_Chr7g0272511 | 68.421 | 38 | 12 | 0 | 281 | 318 | 29 | 66 | 1.34e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032770 | AT3G05600.1 | 60.061 | 328 | 121 | 6 | 1 | 322 | 1 | 324 | 1.47e-145 | 413 |
| Msa0032770 | AT4G02340.1 | 54.630 | 324 | 137 | 5 | 1 | 322 | 1 | 316 | 4.77e-131 | 376 |
| Msa0032770 | AT4G15960.1 | 52.280 | 329 | 145 | 6 | 1 | 322 | 51 | 374 | 2.51e-116 | 341 |
| Msa0032770 | AT2G26740.1 | 55.692 | 325 | 134 | 6 | 4 | 322 | 1 | 321 | 5.28e-116 | 338 |
| Msa0032770 | AT2G26750.1 | 53.704 | 324 | 141 | 6 | 4 | 322 | 1 | 320 | 3.62e-110 | 323 |
| Msa0032770 | AT3G05600.2 | 61.382 | 246 | 86 | 5 | 1 | 240 | 1 | 243 | 5.74e-110 | 320 |
| Msa0032770 | AT4G15955.3 | 49.398 | 332 | 125 | 7 | 3 | 322 | 4 | 304 | 3.34e-101 | 300 |
| Msa0032770 | AT3G51000.1 | 44.411 | 331 | 158 | 8 | 3 | 322 | 4 | 319 | 2.53e-92 | 278 |
| Msa0032770 | AT4G15955.2 | 59.777 | 179 | 58 | 4 | 3 | 170 | 4 | 179 | 2.54e-69 | 214 |
| Msa0032770 | AT4G15955.1 | 60.000 | 170 | 54 | 4 | 3 | 161 | 4 | 170 | 5.54e-66 | 205 |
Find 100 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGTGGCCCCTGATCTTC+GGG | 0.210716 | 1_1:+59915188 | Msa0032770:CDS |
| TGATGTCTTGTGCTGCTTCT+TGG | 0.213872 | 1_1:-59916186 | None:intergenic |
| CTATTATGTGTGCAGATTTC+AGG | 0.219315 | 1_1:+59915482 | Msa0032770:CDS |
| ACATAGGCCTTGACTCTTTC+CGG | 0.225048 | 1_1:-59915372 | None:intergenic |
| CTCTTGGCGCCATCAGATTC+TGG | 0.252842 | 1_1:+59915143 | Msa0032770:CDS |
| GCATCATAGTTGTTTACTTT+GGG | 0.258817 | 1_1:-59915435 | None:intergenic |
| GTGCAGTGGCCCCTGATCTT+CGG | 0.304764 | 1_1:+59915187 | Msa0032770:CDS |
| GTTACTAAATTCAACAAAAC+TGG | 0.304863 | 1_1:+59915818 | Msa0032770:CDS |
| CCAGTTCCATACCCTCCTTT+TGG | 0.320325 | 1_1:-59915731 | None:intergenic |
| CAAGAAAGATGTTCCAGGTT+TGG | 0.350912 | 1_1:+59916123 | Msa0032770:CDS |
| GATGCATTTCATGCCAAGTA+TGG | 0.358360 | 1_1:+59915453 | Msa0032770:CDS |
| TCACCGTAGCCCCGAAGATC+AGG | 0.368042 | 1_1:-59915198 | None:intergenic |
| CACAGAATAGTAGAAGTAAA+TGG | 0.369517 | 1_1:+59915045 | Msa0032770:CDS |
| GTGTAGCTGGTCACTGATTC+CGG | 0.373779 | 1_1:-59915231 | None:intergenic |
| TTCAACAAAACTGGCTTCAC+TGG | 0.380968 | 1_1:+59915827 | Msa0032770:CDS |
| TGCATCATAGTTGTTTACTT+TGG | 0.388996 | 1_1:-59915436 | None:intergenic |
| TGCAGGATATCTTACCATCT+TGG | 0.393575 | 1_1:+59915768 | Msa0032770:CDS |
| TGGAAAAGCCGAAGCCGAAT+TGG | 0.398454 | 1_1:+59915640 | Msa0032770:CDS |
| CCAAAAGGAGGGTATGGAAC+TGG | 0.402502 | 1_1:+59915731 | Msa0032770:CDS |
| TCCCTGAGTTATGGTACTCT+TGG | 0.411714 | 1_1:+59915127 | Msa0032770:CDS |
| TACTCCAGCCAATTCGGCTT+CGG | 0.419392 | 1_1:-59915648 | None:intergenic |
| ATAATAATCAAGATCTTCTT+CGG | 0.431491 | 1_1:-59915795 | None:intergenic |
| TCACCTGTAATGTACTTTAC+CGG | 0.433581 | 1_1:-59916043 | None:intergenic |
| CATTACAGGTGATTGTGGTT+TGG | 0.434737 | 1_1:+59916054 | Msa0032770:CDS |
| TGCACGGTTTCCCTGAGTTA+TGG | 0.436444 | 1_1:+59915118 | Msa0032770:CDS |
| GTACCGGTAAAGTACATTAC+AGG | 0.438457 | 1_1:+59916040 | Msa0032770:CDS |
| GCCCCTGATCTTCGGGGCTA+CGG | 0.442117 | 1_1:+59915195 | Msa0032770:CDS |
| TGTACCTTGTCGGACATGAT+TGG | 0.443115 | 1_1:+59915313 | Msa0032770:CDS |
| ATCACCAACAAGGTGAAAAC+AGG | 0.453861 | 1_1:-59915253 | None:intergenic |
| GGTAAGATATCCTGCATATC+CGG | 0.455206 | 1_1:-59915761 | None:intergenic |
| GTTCCATTCCGACCCTTCCT+TGG | 0.455873 | 1_1:+59915405 | Msa0032770:CDS |
| TTTGGGGTTTCTTCCAAGGA+AGG | 0.460713 | 1_1:-59915418 | None:intergenic |
| TTACTTTGGGGTTTCTTCCA+AGG | 0.467534 | 1_1:-59915422 | None:intergenic |
| GGCCACTGCACGGTAACCCT+TGG | 0.471280 | 1_1:-59915175 | None:intergenic |
| GGTTTCAAGAAAGATGTTCC+AGG | 0.471931 | 1_1:+59916118 | Msa0032770:CDS |
| TGGATTCAATCCGGATATGC+AGG | 0.474601 | 1_1:+59915751 | Msa0032770:CDS |
| TGTTCCAGGTTTGGAGGAAG+TGG | 0.476149 | 1_1:+59916132 | Msa0032770:CDS |
| AACACCTACTCCAGCCAATT+CGG | 0.482718 | 1_1:-59915654 | None:intergenic |
| GTACCTTGTCGGACATGATT+GGG | 0.482847 | 1_1:+59915314 | Msa0032770:CDS |
| AAAATGCATGTTGCAGAGAA+AGG | 0.492527 | 1_1:+59915072 | Msa0032770:CDS |
| AAGGTGAAAACAGGTGTAGC+TGG | 0.497712 | 1_1:-59915244 | None:intergenic |
| TTTGGAGGAAGTGGTTGTGC+AGG | 0.503362 | 1_1:+59916141 | Msa0032770:CDS |
| ATAATAGTCATCTCCATACT+TGG | 0.505750 | 1_1:-59915466 | None:intergenic |
| CTACGGTGAAACTGAAGCTC+CGG | 0.515024 | 1_1:+59915212 | Msa0032770:CDS |
| GAGGAAGTGGTTGTGCAGGA+AGG | 0.517437 | 1_1:+59916145 | Msa0032770:CDS |
| TTGGGGTTTCTTCCAAGGAA+GGG | 0.521536 | 1_1:-59915417 | None:intergenic |
| AAAGCCGAAGCCGAATTGGC+TGG | 0.521985 | 1_1:+59915644 | Msa0032770:CDS |
| CGCCAAGAGTACCATAACTC+AGG | 0.523914 | 1_1:-59915129 | None:intergenic |
| CATGATTGGGGTGCGATCAT+CGG | 0.526291 | 1_1:+59915327 | Msa0032770:CDS |
| CATCATAGTTGTTTACTTTG+GGG | 0.527231 | 1_1:-59915434 | None:intergenic |
| AACAAAACTGGCTTCACTGG+AGG | 0.529011 | 1_1:+59915830 | Msa0032770:CDS |
| GTATGTTTGCATGTTCCGAC+CGG | 0.531431 | 1_1:+59915353 | Msa0032770:CDS |
| GATTCTGGATTTGAGCTCCA+AGG | 0.531726 | 1_1:+59915158 | Msa0032770:CDS |
| AGGAAGTGGTTGTGCAGGAA+GGG | 0.538638 | 1_1:+59916146 | Msa0032770:CDS |
| ACAACCACTTCCTCCAAACC+TGG | 0.541024 | 1_1:-59916136 | None:intergenic |
| CACCGTAGCCCCGAAGATCA+GGG | 0.541844 | 1_1:-59915197 | None:intergenic |
| CTTCCAAGGAAGGGTCGGAA+TGG | 0.543706 | 1_1:-59915408 | None:intergenic |
| AAGTACATTACAGGTGATTG+TGG | 0.546047 | 1_1:+59916049 | Msa0032770:CDS |
| CCAGTGGTGTTGATGTTGCA+CGG | 0.546061 | 1_1:+59915102 | Msa0032770:CDS |
| GAAAGATGTTCCAGGTTTGG+AGG | 0.547019 | 1_1:+59916126 | Msa0032770:CDS |
| ATTCTGGATTTGAGCTCCAA+GGG | 0.550282 | 1_1:+59915159 | Msa0032770:CDS |
| CCGTGCAACATCAACACCAC+TGG | 0.550819 | 1_1:-59915102 | None:intergenic |
| TGGAACACTAAGACAAACAT+AGG | 0.551680 | 1_1:-59915388 | None:intergenic |
| ACATCACCATGGAGTGAAGT+AGG | 0.556604 | 1_1:+59916007 | Msa0032770:CDS |
| GTGGACAAAGTGTACCTTGT+CGG | 0.558093 | 1_1:+59915303 | Msa0032770:CDS |
| GGTTTCTTCCAAGGAAGGGT+CGG | 0.558393 | 1_1:-59915413 | None:intergenic |
| CTCCAAGGGTTACCGTGCAG+TGG | 0.559388 | 1_1:+59915173 | Msa0032770:CDS |
| ATTGCACTCATTGACTCTCT+AGG | 0.560324 | 1_1:+59915279 | Msa0032770:CDS |
| ACAAAACTGGCTTCACTGGA+GGG | 0.561868 | 1_1:+59915831 | Msa0032770:CDS |
| TCTTCTTCGGAAAGCCAAGA+TGG | 0.563903 | 1_1:-59915782 | None:intergenic |
| TTTGGGAAAATTGGAGGACC+GGG | 0.570933 | 1_1:-59915713 | None:intergenic |
| ATGGTTACTTTCCAGGAACT+GGG | 0.571538 | 1_1:+59915979 | Msa0032770:intron |
| AGTAGGAGTGGTAAATGTAC+CGG | 0.572295 | 1_1:+59916024 | Msa0032770:CDS |
| GTATGGAACTGGATTCAATC+CGG | 0.573575 | 1_1:+59915742 | Msa0032770:CDS |
| TGATAACATTGATAGGAACC+TGG | 0.573596 | 1_1:+59915620 | Msa0032770:intron |
| ACCACTCCTACTTCACTCCA+TGG | 0.577429 | 1_1:-59916013 | None:intergenic |
| ATGATGACAACGAGGAAACC+CGG | 0.579962 | 1_1:+59915695 | Msa0032770:CDS |
| GAAGATCAGGGGCCACTGCA+CGG | 0.580274 | 1_1:-59915185 | None:intergenic |
| ATACACTACGCCGAGTATGA+AGG | 0.580910 | 1_1:+59916078 | Msa0032770:CDS |
| ATTGGGGTGCGATCATCGGT+TGG | 0.592371 | 1_1:+59915331 | Msa0032770:CDS |
| AGCTCAAATCCAGAATCTGA+TGG | 0.613338 | 1_1:-59915152 | None:intergenic |
| GCCAAGAGTACCATAACTCA+GGG | 0.614710 | 1_1:-59915128 | None:intergenic |
| CATGTTGCAGAGAAAGGAGA+AGG | 0.616899 | 1_1:+59915078 | Msa0032770:CDS |
| ACCGTAGCCCCGAAGATCAG+GGG | 0.621226 | 1_1:-59915196 | None:intergenic |
| AGGCCTTGACTCTTTCCGGT+CGG | 0.623489 | 1_1:-59915368 | None:intergenic |
| GTTCCGACCGGAAAGAGTCA+AGG | 0.623865 | 1_1:+59915365 | Msa0032770:CDS |
| GCAGTGGCCCCTGATCTTCG+GGG | 0.625803 | 1_1:+59915189 | Msa0032770:CDS |
| ATGAAGGAATATATCCTCGA+TGG | 0.629060 | 1_1:+59916094 | Msa0032770:CDS |
| CACCCCAATCATGTCCGACA+AGG | 0.629611 | 1_1:-59915317 | None:intergenic |
| AGGATATATTCCTTCATACT+CGG | 0.633804 | 1_1:-59916088 | None:intergenic |
| ACCATGGAGTGAAGTAGGAG+TGG | 0.635510 | 1_1:+59916012 | Msa0032770:CDS |
| TACCTTGTCGGACATGATTG+GGG | 0.642774 | 1_1:+59915315 | Msa0032770:CDS |
| AAGGAATATATCCTCGATGG+TGG | 0.654767 | 1_1:+59916097 | Msa0032770:CDS |
| AGAGAAAGGAGAAGGTCCAG+TGG | 0.656472 | 1_1:+59915086 | Msa0032770:CDS |
| GAAGCCGAATTGGCTGGAGT+AGG | 0.676454 | 1_1:+59915650 | Msa0032770:CDS |
| ACTCATTGACTCTCTAGGTG+TGG | 0.677971 | 1_1:+59915284 | Msa0032770:CDS |
| GTGCAATGATATCACCAACA+AGG | 0.702915 | 1_1:-59915263 | None:intergenic |
| CTTTCTTGAAACCACCATCG+AGG | 0.706418 | 1_1:-59916108 | None:intergenic |
| ACTGGGAGCTAACATCACCA+TGG | 0.711994 | 1_1:+59915996 | Msa0032770:CDS |
| TGCGTAACATGATGACAACG+AGG | 0.737897 | 1_1:+59915687 | Msa0032770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTAAATACAACAAAATTT+AGG | + | chr1_1:59915576-59915595 | Msa0032770:intron | 15.0% |
| !! | TACTAAATACAACAAAATTT+AGG | + | chr1_1:59915576-59915595 | Msa0032770:intron | 15.0% |
| !! | CTTTAGTATATATAAAGACA+TGG | + | chr1_1:59915531-59915550 | Msa0032770:intron | 20.0% |
| !!! | ACTTTATTGATAACATTGAT+AGG | + | chr1_1:59915613-59915632 | Msa0032770:intron | 20.0% |
| !! | ATAATAATCAAGATCTTCTT+CGG | - | chr1_1:59915798-59915817 | None:intergenic | 20.0% |
| !! | CTTTAGTATATATAAAGACA+TGG | + | chr1_1:59915531-59915550 | Msa0032770:intron | 20.0% |
| !!! | ACTTTATTGATAACATTGAT+AGG | + | chr1_1:59915613-59915632 | Msa0032770:intron | 20.0% |
| !! | ATAATAATCAAGATCTTCTT+CGG | - | chr1_1:59915798-59915817 | None:intergenic | 20.0% |
| ! | GTTACTAAATTCAACAAAAC+TGG | + | chr1_1:59915818-59915837 | Msa0032770:CDS | 25.0% |
| ! | GTTACTAAATTCAACAAAAC+TGG | + | chr1_1:59915818-59915837 | Msa0032770:CDS | 25.0% |
| CACAGAATAGTAGAAGTAAA+TGG | + | chr1_1:59915045-59915064 | Msa0032770:CDS | 30.0% | |
| CATCATAGTTGTTTACTTTG+GGG | - | chr1_1:59915437-59915456 | None:intergenic | 30.0% | |
| GCATCATAGTTGTTTACTTT+GGG | - | chr1_1:59915438-59915457 | None:intergenic | 30.0% | |
| TGCATCATAGTTGTTTACTT+TGG | - | chr1_1:59915439-59915458 | None:intergenic | 30.0% | |
| ATAATAGTCATCTCCATACT+TGG | - | chr1_1:59915469-59915488 | None:intergenic | 30.0% | |
| CATCATGTTACGCAAAAAAT+AGG | - | chr1_1:59915681-59915700 | None:intergenic | 30.0% | |
| AGGATATATTCCTTCATACT+CGG | - | chr1_1:59916091-59916110 | None:intergenic | 30.0% | |
| CACAGAATAGTAGAAGTAAA+TGG | + | chr1_1:59915045-59915064 | Msa0032770:CDS | 30.0% | |
| CATCATAGTTGTTTACTTTG+GGG | - | chr1_1:59915437-59915456 | None:intergenic | 30.0% | |
| GCATCATAGTTGTTTACTTT+GGG | - | chr1_1:59915438-59915457 | None:intergenic | 30.0% | |
| TGCATCATAGTTGTTTACTT+TGG | - | chr1_1:59915439-59915458 | None:intergenic | 30.0% | |
| ATAATAGTCATCTCCATACT+TGG | - | chr1_1:59915469-59915488 | None:intergenic | 30.0% | |
| CATCATGTTACGCAAAAAAT+AGG | - | chr1_1:59915681-59915700 | None:intergenic | 30.0% | |
| AGGATATATTCCTTCATACT+CGG | - | chr1_1:59916091-59916110 | None:intergenic | 30.0% | |
| AAAATGCATGTTGCAGAGAA+AGG | + | chr1_1:59915072-59915091 | Msa0032770:CDS | 35.0% | |
| TGGAACACTAAGACAAACAT+AGG | - | chr1_1:59915391-59915410 | None:intergenic | 35.0% | |
| CTATTATGTGTGCAGATTTC+AGG | + | chr1_1:59915482-59915501 | Msa0032770:CDS | 35.0% | |
| TGATAACATTGATAGGAACC+TGG | + | chr1_1:59915620-59915639 | Msa0032770:intron | 35.0% | |
| CATTATCAGCTAGTGAAAAG+AGG | - | chr1_1:59915962-59915981 | None:intergenic | 35.0% | |
| ! | CTCTTTTCACTAGCTGATAA+TGG | + | chr1_1:59915960-59915979 | Msa0032770:intron | 35.0% |
| TCACCTGTAATGTACTTTAC+CGG | - | chr1_1:59916046-59916065 | None:intergenic | 35.0% | |
| AAGTACATTACAGGTGATTG+TGG | + | chr1_1:59916049-59916068 | Msa0032770:CDS | 35.0% | |
| ATGAAGGAATATATCCTCGA+TGG | + | chr1_1:59916094-59916113 | Msa0032770:CDS | 35.0% | |
| AAAATGCATGTTGCAGAGAA+AGG | + | chr1_1:59915072-59915091 | Msa0032770:CDS | 35.0% | |
| TGGAACACTAAGACAAACAT+AGG | - | chr1_1:59915391-59915410 | None:intergenic | 35.0% | |
| CTATTATGTGTGCAGATTTC+AGG | + | chr1_1:59915482-59915501 | Msa0032770:CDS | 35.0% | |
| TGATAACATTGATAGGAACC+TGG | + | chr1_1:59915620-59915639 | Msa0032770:intron | 35.0% | |
| CATTATCAGCTAGTGAAAAG+AGG | - | chr1_1:59915962-59915981 | None:intergenic | 35.0% | |
| ! | CTCTTTTCACTAGCTGATAA+TGG | + | chr1_1:59915960-59915979 | Msa0032770:intron | 35.0% |
| TCACCTGTAATGTACTTTAC+CGG | - | chr1_1:59916046-59916065 | None:intergenic | 35.0% | |
| AAGTACATTACAGGTGATTG+TGG | + | chr1_1:59916049-59916068 | Msa0032770:CDS | 35.0% | |
| ATGAAGGAATATATCCTCGA+TGG | + | chr1_1:59916094-59916113 | Msa0032770:CDS | 35.0% | |
| AGCTCAAATCCAGAATCTGA+TGG | - | chr1_1:59915155-59915174 | None:intergenic | 40.0% | |
| ATTCTGGATTTGAGCTCCAA+GGG | + | chr1_1:59915159-59915178 | Msa0032770:CDS | 40.0% | |
| ! | TACACCTGTTTTCACCTTGT+TGG | + | chr1_1:59915249-59915268 | Msa0032770:CDS | 40.0% |
| ATCACCAACAAGGTGAAAAC+AGG | - | chr1_1:59915256-59915275 | None:intergenic | 40.0% | |
| GTGCAATGATATCACCAACA+AGG | - | chr1_1:59915266-59915285 | None:intergenic | 40.0% | |
| !! | ATTGCACTCATTGACTCTCT+AGG | + | chr1_1:59915279-59915298 | Msa0032770:CDS | 40.0% |
| !! | TTACTTTGGGGTTTCTTCCA+AGG | - | chr1_1:59915425-59915444 | None:intergenic | 40.0% |
| GATGCATTTCATGCCAAGTA+TGG | + | chr1_1:59915453-59915472 | Msa0032770:CDS | 40.0% | |
| !! | TTTTGGGAAAATTGGAGGAC+CGG | - | chr1_1:59915717-59915736 | None:intergenic | 40.0% |
| ! | CTCCAATTTTCCCAAAAGGA+GGG | + | chr1_1:59915720-59915739 | Msa0032770:CDS | 40.0% |
| !! | TACCCTCCTTTTGGGAAAAT+TGG | - | chr1_1:59915725-59915744 | None:intergenic | 40.0% |
| ! | ATTTTCCCAAAAGGAGGGTA+TGG | + | chr1_1:59915725-59915744 | Msa0032770:CDS | 40.0% |
| GTATGGAACTGGATTCAATC+CGG | + | chr1_1:59915742-59915761 | Msa0032770:CDS | 40.0% | |
| GGTAAGATATCCTGCATATC+CGG | - | chr1_1:59915764-59915783 | None:intergenic | 40.0% | |
| TGCAGGATATCTTACCATCT+TGG | + | chr1_1:59915768-59915787 | Msa0032770:CDS | 40.0% | |
| ! | TTCAACAAAACTGGCTTCAC+TGG | + | chr1_1:59915827-59915846 | Msa0032770:CDS | 40.0% |
| !! | GCTGATAATGGTTACTTTCC+AGG | + | chr1_1:59915972-59915991 | Msa0032770:intron | 40.0% |
| ! | AATGGTTACTTTCCAGGAAC+TGG | + | chr1_1:59915978-59915997 | Msa0032770:intron | 40.0% |
| ! | ATGGTTACTTTCCAGGAACT+GGG | + | chr1_1:59915979-59915998 | Msa0032770:intron | 40.0% |
| AGTAGGAGTGGTAAATGTAC+CGG | + | chr1_1:59916024-59916043 | Msa0032770:CDS | 40.0% | |
| ! | GTACCGGTAAAGTACATTAC+AGG | + | chr1_1:59916040-59916059 | Msa0032770:CDS | 40.0% |
| CATTACAGGTGATTGTGGTT+TGG | + | chr1_1:59916054-59916073 | Msa0032770:CDS | 40.0% | |
| AAGGAATATATCCTCGATGG+TGG | + | chr1_1:59916097-59916116 | Msa0032770:CDS | 40.0% | |
| GGTTTCAAGAAAGATGTTCC+AGG | + | chr1_1:59916118-59916137 | Msa0032770:CDS | 40.0% | |
| CAAGAAAGATGTTCCAGGTT+TGG | + | chr1_1:59916123-59916142 | Msa0032770:CDS | 40.0% | |
| AGCTCAAATCCAGAATCTGA+TGG | - | chr1_1:59915155-59915174 | None:intergenic | 40.0% | |
| ATTCTGGATTTGAGCTCCAA+GGG | + | chr1_1:59915159-59915178 | Msa0032770:CDS | 40.0% | |
| ! | TACACCTGTTTTCACCTTGT+TGG | + | chr1_1:59915249-59915268 | Msa0032770:CDS | 40.0% |
| ATCACCAACAAGGTGAAAAC+AGG | - | chr1_1:59915256-59915275 | None:intergenic | 40.0% | |
| GTGCAATGATATCACCAACA+AGG | - | chr1_1:59915266-59915285 | None:intergenic | 40.0% | |
| !! | ATTGCACTCATTGACTCTCT+AGG | + | chr1_1:59915279-59915298 | Msa0032770:CDS | 40.0% |
| !! | TTACTTTGGGGTTTCTTCCA+AGG | - | chr1_1:59915425-59915444 | None:intergenic | 40.0% |
| GATGCATTTCATGCCAAGTA+TGG | + | chr1_1:59915453-59915472 | Msa0032770:CDS | 40.0% | |
| !! | TTTTGGGAAAATTGGAGGAC+CGG | - | chr1_1:59915717-59915736 | None:intergenic | 40.0% |
| ! | CTCCAATTTTCCCAAAAGGA+GGG | + | chr1_1:59915720-59915739 | Msa0032770:CDS | 40.0% |
| !! | TACCCTCCTTTTGGGAAAAT+TGG | - | chr1_1:59915725-59915744 | None:intergenic | 40.0% |
| ! | ATTTTCCCAAAAGGAGGGTA+TGG | + | chr1_1:59915725-59915744 | Msa0032770:CDS | 40.0% |
| GTATGGAACTGGATTCAATC+CGG | + | chr1_1:59915742-59915761 | Msa0032770:CDS | 40.0% | |
| GGTAAGATATCCTGCATATC+CGG | - | chr1_1:59915764-59915783 | None:intergenic | 40.0% | |
| TGCAGGATATCTTACCATCT+TGG | + | chr1_1:59915768-59915787 | Msa0032770:CDS | 40.0% | |
| ! | TTCAACAAAACTGGCTTCAC+TGG | + | chr1_1:59915827-59915846 | Msa0032770:CDS | 40.0% |
| !! | GCTGATAATGGTTACTTTCC+AGG | + | chr1_1:59915972-59915991 | Msa0032770:intron | 40.0% |
| ! | AATGGTTACTTTCCAGGAAC+TGG | + | chr1_1:59915978-59915997 | Msa0032770:intron | 40.0% |
| ! | ATGGTTACTTTCCAGGAACT+GGG | + | chr1_1:59915979-59915998 | Msa0032770:intron | 40.0% |
| AGTAGGAGTGGTAAATGTAC+CGG | + | chr1_1:59916024-59916043 | Msa0032770:CDS | 40.0% | |
| ! | GTACCGGTAAAGTACATTAC+AGG | + | chr1_1:59916040-59916059 | Msa0032770:CDS | 40.0% |
| CATTACAGGTGATTGTGGTT+TGG | + | chr1_1:59916054-59916073 | Msa0032770:CDS | 40.0% | |
| AAGGAATATATCCTCGATGG+TGG | + | chr1_1:59916097-59916116 | Msa0032770:CDS | 40.0% | |
| GGTTTCAAGAAAGATGTTCC+AGG | + | chr1_1:59916118-59916137 | Msa0032770:CDS | 40.0% | |
| CAAGAAAGATGTTCCAGGTT+TGG | + | chr1_1:59916123-59916142 | Msa0032770:CDS | 40.0% | |
| CATGTTGCAGAGAAAGGAGA+AGG | + | chr1_1:59915078-59915097 | Msa0032770:CDS | 45.0% | |
| TCCCTGAGTTATGGTACTCT+TGG | + | chr1_1:59915127-59915146 | Msa0032770:CDS | 45.0% | |
| !! | GCCAAGAGTACCATAACTCA+GGG | - | chr1_1:59915131-59915150 | None:intergenic | 45.0% |
| GATTCTGGATTTGAGCTCCA+AGG | + | chr1_1:59915158-59915177 | Msa0032770:CDS | 45.0% | |
| AAGGTGAAAACAGGTGTAGC+TGG | - | chr1_1:59915247-59915266 | None:intergenic | 45.0% | |
| !! | ACTCATTGACTCTCTAGGTG+TGG | + | chr1_1:59915284-59915303 | Msa0032770:CDS | 45.0% |
| GTGGACAAAGTGTACCTTGT+CGG | + | chr1_1:59915303-59915322 | Msa0032770:CDS | 45.0% | |
| TGTACCTTGTCGGACATGAT+TGG | + | chr1_1:59915313-59915332 | Msa0032770:CDS | 45.0% | |
| GTACCTTGTCGGACATGATT+GGG | + | chr1_1:59915314-59915333 | Msa0032770:CDS | 45.0% | |
| TACCTTGTCGGACATGATTG+GGG | + | chr1_1:59915315-59915334 | Msa0032770:CDS | 45.0% | |
| GTATGTTTGCATGTTCCGAC+CGG | + | chr1_1:59915353-59915372 | Msa0032770:CDS | 45.0% | |
| ACATAGGCCTTGACTCTTTC+CGG | - | chr1_1:59915375-59915394 | None:intergenic | 45.0% | |
| TTGGGGTTTCTTCCAAGGAA+GGG | - | chr1_1:59915420-59915439 | None:intergenic | 45.0% | |
| ! | TTTGGGGTTTCTTCCAAGGA+AGG | - | chr1_1:59915421-59915440 | None:intergenic | 45.0% |
| AACACCTACTCCAGCCAATT+CGG | - | chr1_1:59915657-59915676 | None:intergenic | 45.0% | |
| TGCGTAACATGATGACAACG+AGG | + | chr1_1:59915687-59915706 | Msa0032770:CDS | 45.0% | |
| ATGATGACAACGAGGAAACC+CGG | + | chr1_1:59915695-59915714 | Msa0032770:CDS | 45.0% | |
| TTTGGGAAAATTGGAGGACC+GGG | - | chr1_1:59915716-59915735 | None:intergenic | 45.0% | |
| ! | GGTCCTCCAATTTTCCCAAA+AGG | + | chr1_1:59915716-59915735 | Msa0032770:CDS | 45.0% |
| !! | CCTCCTTTTGGGAAAATTGG+AGG | - | chr1_1:59915722-59915741 | None:intergenic | 45.0% |
| ! | CCTCCAATTTTCCCAAAAGG+AGG | + | chr1_1:59915719-59915738 | Msa0032770:CDS | 45.0% |
| ! | CAGTTCCATACCCTCCTTTT+GGG | - | chr1_1:59915733-59915752 | None:intergenic | 45.0% |
| TGGATTCAATCCGGATATGC+AGG | + | chr1_1:59915751-59915770 | Msa0032770:CDS | 45.0% | |
| TCTTCTTCGGAAAGCCAAGA+TGG | - | chr1_1:59915785-59915804 | None:intergenic | 45.0% | |
| ! | AACAAAACTGGCTTCACTGG+AGG | + | chr1_1:59915830-59915849 | Msa0032770:CDS | 45.0% |
| ! | ACAAAACTGGCTTCACTGGA+GGG | + | chr1_1:59915831-59915850 | Msa0032770:CDS | 45.0% |
| ACATCACCATGGAGTGAAGT+AGG | + | chr1_1:59916007-59916026 | Msa0032770:CDS | 45.0% | |
| ATACACTACGCCGAGTATGA+AGG | + | chr1_1:59916078-59916097 | Msa0032770:CDS | 45.0% | |
| CTTTCTTGAAACCACCATCG+AGG | - | chr1_1:59916111-59916130 | None:intergenic | 45.0% | |
| GAAAGATGTTCCAGGTTTGG+AGG | + | chr1_1:59916126-59916145 | Msa0032770:CDS | 45.0% | |
| !! | TGATGTCTTGTGCTGCTTCT+TGG | - | chr1_1:59916189-59916208 | None:intergenic | 45.0% |
| CATGTTGCAGAGAAAGGAGA+AGG | + | chr1_1:59915078-59915097 | Msa0032770:CDS | 45.0% | |
| TCCCTGAGTTATGGTACTCT+TGG | + | chr1_1:59915127-59915146 | Msa0032770:CDS | 45.0% | |
| !! | GCCAAGAGTACCATAACTCA+GGG | - | chr1_1:59915131-59915150 | None:intergenic | 45.0% |
| GATTCTGGATTTGAGCTCCA+AGG | + | chr1_1:59915158-59915177 | Msa0032770:CDS | 45.0% | |
| AAGGTGAAAACAGGTGTAGC+TGG | - | chr1_1:59915247-59915266 | None:intergenic | 45.0% | |
| !! | ACTCATTGACTCTCTAGGTG+TGG | + | chr1_1:59915284-59915303 | Msa0032770:CDS | 45.0% |
| GTGGACAAAGTGTACCTTGT+CGG | + | chr1_1:59915303-59915322 | Msa0032770:CDS | 45.0% | |
| TGTACCTTGTCGGACATGAT+TGG | + | chr1_1:59915313-59915332 | Msa0032770:CDS | 45.0% | |
| GTACCTTGTCGGACATGATT+GGG | + | chr1_1:59915314-59915333 | Msa0032770:CDS | 45.0% | |
| TACCTTGTCGGACATGATTG+GGG | + | chr1_1:59915315-59915334 | Msa0032770:CDS | 45.0% | |
| GTATGTTTGCATGTTCCGAC+CGG | + | chr1_1:59915353-59915372 | Msa0032770:CDS | 45.0% | |
| ACATAGGCCTTGACTCTTTC+CGG | - | chr1_1:59915375-59915394 | None:intergenic | 45.0% | |
| TTGGGGTTTCTTCCAAGGAA+GGG | - | chr1_1:59915420-59915439 | None:intergenic | 45.0% | |
| ! | TTTGGGGTTTCTTCCAAGGA+AGG | - | chr1_1:59915421-59915440 | None:intergenic | 45.0% |
| AACACCTACTCCAGCCAATT+CGG | - | chr1_1:59915657-59915676 | None:intergenic | 45.0% | |
| TGCGTAACATGATGACAACG+AGG | + | chr1_1:59915687-59915706 | Msa0032770:CDS | 45.0% | |
| ATGATGACAACGAGGAAACC+CGG | + | chr1_1:59915695-59915714 | Msa0032770:CDS | 45.0% | |
| TTTGGGAAAATTGGAGGACC+GGG | - | chr1_1:59915716-59915735 | None:intergenic | 45.0% | |
| ! | GGTCCTCCAATTTTCCCAAA+AGG | + | chr1_1:59915716-59915735 | Msa0032770:CDS | 45.0% |
| !! | CCTCCTTTTGGGAAAATTGG+AGG | - | chr1_1:59915722-59915741 | None:intergenic | 45.0% |
| ! | CCTCCAATTTTCCCAAAAGG+AGG | + | chr1_1:59915719-59915738 | Msa0032770:CDS | 45.0% |
| ! | CAGTTCCATACCCTCCTTTT+GGG | - | chr1_1:59915733-59915752 | None:intergenic | 45.0% |
| TGGATTCAATCCGGATATGC+AGG | + | chr1_1:59915751-59915770 | Msa0032770:CDS | 45.0% | |
| TCTTCTTCGGAAAGCCAAGA+TGG | - | chr1_1:59915785-59915804 | None:intergenic | 45.0% | |
| ! | AACAAAACTGGCTTCACTGG+AGG | + | chr1_1:59915830-59915849 | Msa0032770:CDS | 45.0% |
| ! | ACAAAACTGGCTTCACTGGA+GGG | + | chr1_1:59915831-59915850 | Msa0032770:CDS | 45.0% |
| ACATCACCATGGAGTGAAGT+AGG | + | chr1_1:59916007-59916026 | Msa0032770:CDS | 45.0% | |
| ATACACTACGCCGAGTATGA+AGG | + | chr1_1:59916078-59916097 | Msa0032770:CDS | 45.0% | |
| CTTTCTTGAAACCACCATCG+AGG | - | chr1_1:59916111-59916130 | None:intergenic | 45.0% | |
| GAAAGATGTTCCAGGTTTGG+AGG | + | chr1_1:59916126-59916145 | Msa0032770:CDS | 45.0% | |
| !! | TGATGTCTTGTGCTGCTTCT+TGG | - | chr1_1:59916189-59916208 | None:intergenic | 45.0% |
| !!! | CTTTTTATTTTTATAAATTT+TGG | - | chr1_1:59915916-59915935 | None:intergenic | 5.0% |
| !! | CAAAATTTATAAAAATAAAA+AGG | + | chr1_1:59915914-59915933 | Msa0032770:intron | 5.0% |
| !!! | CTTTTTATTTTTATAAATTT+TGG | - | chr1_1:59915916-59915935 | None:intergenic | 5.0% |
| !! | CAAAATTTATAAAAATAAAA+AGG | + | chr1_1:59915914-59915933 | Msa0032770:intron | 5.0% |
| AGAGAAAGGAGAAGGTCCAG+TGG | + | chr1_1:59915086-59915105 | Msa0032770:CDS | 50.0% | |
| !! | CCAGTGGTGTTGATGTTGCA+CGG | + | chr1_1:59915102-59915121 | Msa0032770:CDS | 50.0% |
| TGCACGGTTTCCCTGAGTTA+TGG | + | chr1_1:59915118-59915137 | Msa0032770:CDS | 50.0% | |
| !! | CGCCAAGAGTACCATAACTC+AGG | - | chr1_1:59915132-59915151 | None:intergenic | 50.0% |
| CTACGGTGAAACTGAAGCTC+CGG | + | chr1_1:59915212-59915231 | Msa0032770:CDS | 50.0% | |
| !! | GTGTAGCTGGTCACTGATTC+CGG | - | chr1_1:59915234-59915253 | None:intergenic | 50.0% |
| CATGATTGGGGTGCGATCAT+CGG | + | chr1_1:59915327-59915346 | Msa0032770:CDS | 50.0% | |
| GGTTTCTTCCAAGGAAGGGT+CGG | - | chr1_1:59915416-59915435 | None:intergenic | 50.0% | |
| ! | AATTCGGCTTCGGCTTTTCC+AGG | - | chr1_1:59915641-59915660 | None:intergenic | 50.0% |
| TGGAAAAGCCGAAGCCGAAT+TGG | + | chr1_1:59915640-59915659 | Msa0032770:CDS | 50.0% | |
| TACTCCAGCCAATTCGGCTT+CGG | - | chr1_1:59915651-59915670 | None:intergenic | 50.0% | |
| ! | CCAGTTCCATACCCTCCTTT+TGG | - | chr1_1:59915734-59915753 | None:intergenic | 50.0% |
| ! | CCAAAAGGAGGGTATGGAAC+TGG | + | chr1_1:59915731-59915750 | Msa0032770:CDS | 50.0% |
| TGATGTTAGCTCCCAGTTCC+TGG | - | chr1_1:59915993-59916012 | None:intergenic | 50.0% | |
| ACTGGGAGCTAACATCACCA+TGG | + | chr1_1:59915996-59916015 | Msa0032770:CDS | 50.0% | |
| ACCATGGAGTGAAGTAGGAG+TGG | + | chr1_1:59916012-59916031 | Msa0032770:CDS | 50.0% | |
| ACCACTCCTACTTCACTCCA+TGG | - | chr1_1:59916016-59916035 | None:intergenic | 50.0% | |
| TGTTCCAGGTTTGGAGGAAG+TGG | + | chr1_1:59916132-59916151 | Msa0032770:CDS | 50.0% | |
| ACAACCACTTCCTCCAAACC+TGG | - | chr1_1:59916139-59916158 | None:intergenic | 50.0% | |
| TTTGGAGGAAGTGGTTGTGC+AGG | + | chr1_1:59916141-59916160 | Msa0032770:CDS | 50.0% | |
| AGGAAGTGGTTGTGCAGGAA+GGG | + | chr1_1:59916146-59916165 | Msa0032770:CDS | 50.0% | |
| AGAGAAAGGAGAAGGTCCAG+TGG | + | chr1_1:59915086-59915105 | Msa0032770:CDS | 50.0% | |
| !! | CCAGTGGTGTTGATGTTGCA+CGG | + | chr1_1:59915102-59915121 | Msa0032770:CDS | 50.0% |
| TGCACGGTTTCCCTGAGTTA+TGG | + | chr1_1:59915118-59915137 | Msa0032770:CDS | 50.0% | |
| !! | CGCCAAGAGTACCATAACTC+AGG | - | chr1_1:59915132-59915151 | None:intergenic | 50.0% |
| CTACGGTGAAACTGAAGCTC+CGG | + | chr1_1:59915212-59915231 | Msa0032770:CDS | 50.0% | |
| !! | GTGTAGCTGGTCACTGATTC+CGG | - | chr1_1:59915234-59915253 | None:intergenic | 50.0% |
| CATGATTGGGGTGCGATCAT+CGG | + | chr1_1:59915327-59915346 | Msa0032770:CDS | 50.0% | |
| GGTTTCTTCCAAGGAAGGGT+CGG | - | chr1_1:59915416-59915435 | None:intergenic | 50.0% | |
| ! | AATTCGGCTTCGGCTTTTCC+AGG | - | chr1_1:59915641-59915660 | None:intergenic | 50.0% |
| TGGAAAAGCCGAAGCCGAAT+TGG | + | chr1_1:59915640-59915659 | Msa0032770:CDS | 50.0% | |
| TACTCCAGCCAATTCGGCTT+CGG | - | chr1_1:59915651-59915670 | None:intergenic | 50.0% | |
| ! | CCAGTTCCATACCCTCCTTT+TGG | - | chr1_1:59915734-59915753 | None:intergenic | 50.0% |
| ! | CCAAAAGGAGGGTATGGAAC+TGG | + | chr1_1:59915731-59915750 | Msa0032770:CDS | 50.0% |
| TGATGTTAGCTCCCAGTTCC+TGG | - | chr1_1:59915993-59916012 | None:intergenic | 50.0% | |
| ACTGGGAGCTAACATCACCA+TGG | + | chr1_1:59915996-59916015 | Msa0032770:CDS | 50.0% | |
| ACCATGGAGTGAAGTAGGAG+TGG | + | chr1_1:59916012-59916031 | Msa0032770:CDS | 50.0% | |
| ACCACTCCTACTTCACTCCA+TGG | - | chr1_1:59916016-59916035 | None:intergenic | 50.0% | |
| TGTTCCAGGTTTGGAGGAAG+TGG | + | chr1_1:59916132-59916151 | Msa0032770:CDS | 50.0% | |
| ACAACCACTTCCTCCAAACC+TGG | - | chr1_1:59916139-59916158 | None:intergenic | 50.0% | |
| TTTGGAGGAAGTGGTTGTGC+AGG | + | chr1_1:59916141-59916160 | Msa0032770:CDS | 50.0% | |
| AGGAAGTGGTTGTGCAGGAA+GGG | + | chr1_1:59916146-59916165 | Msa0032770:CDS | 50.0% | |
| CCGTGCAACATCAACACCAC+TGG | - | chr1_1:59915105-59915124 | None:intergenic | 55.0% | |
| CTCTTGGCGCCATCAGATTC+TGG | + | chr1_1:59915143-59915162 | Msa0032770:CDS | 55.0% | |
| CACCCCAATCATGTCCGACA+AGG | - | chr1_1:59915320-59915339 | None:intergenic | 55.0% | |
| ATTGGGGTGCGATCATCGGT+TGG | + | chr1_1:59915331-59915350 | Msa0032770:CDS | 55.0% | |
| GTTCCGACCGGAAAGAGTCA+AGG | + | chr1_1:59915365-59915384 | Msa0032770:CDS | 55.0% | |
| AGGCCTTGACTCTTTCCGGT+CGG | - | chr1_1:59915371-59915390 | None:intergenic | 55.0% | |
| GTTCCATTCCGACCCTTCCT+TGG | + | chr1_1:59915405-59915424 | Msa0032770:CDS | 55.0% | |
| CTTCCAAGGAAGGGTCGGAA+TGG | - | chr1_1:59915411-59915430 | None:intergenic | 55.0% | |
| AAAGCCGAAGCCGAATTGGC+TGG | + | chr1_1:59915644-59915663 | Msa0032770:CDS | 55.0% | |
| GAAGCCGAATTGGCTGGAGT+AGG | + | chr1_1:59915650-59915669 | Msa0032770:CDS | 55.0% | |
| GAGGAAGTGGTTGTGCAGGA+AGG | + | chr1_1:59916145-59916164 | Msa0032770:CDS | 55.0% | |
| CCGTGCAACATCAACACCAC+TGG | - | chr1_1:59915105-59915124 | None:intergenic | 55.0% | |
| CTCTTGGCGCCATCAGATTC+TGG | + | chr1_1:59915143-59915162 | Msa0032770:CDS | 55.0% | |
| CACCCCAATCATGTCCGACA+AGG | - | chr1_1:59915320-59915339 | None:intergenic | 55.0% | |
| ATTGGGGTGCGATCATCGGT+TGG | + | chr1_1:59915331-59915350 | Msa0032770:CDS | 55.0% | |
| GTTCCGACCGGAAAGAGTCA+AGG | + | chr1_1:59915365-59915384 | Msa0032770:CDS | 55.0% | |
| AGGCCTTGACTCTTTCCGGT+CGG | - | chr1_1:59915371-59915390 | None:intergenic | 55.0% | |
| GTTCCATTCCGACCCTTCCT+TGG | + | chr1_1:59915405-59915424 | Msa0032770:CDS | 55.0% | |
| CTTCCAAGGAAGGGTCGGAA+TGG | - | chr1_1:59915411-59915430 | None:intergenic | 55.0% | |
| AAAGCCGAAGCCGAATTGGC+TGG | + | chr1_1:59915644-59915663 | Msa0032770:CDS | 55.0% | |
| GAAGCCGAATTGGCTGGAGT+AGG | + | chr1_1:59915650-59915669 | Msa0032770:CDS | 55.0% | |
| GAGGAAGTGGTTGTGCAGGA+AGG | + | chr1_1:59916145-59916164 | Msa0032770:CDS | 55.0% | |
| CTCCAAGGGTTACCGTGCAG+TGG | + | chr1_1:59915173-59915192 | Msa0032770:CDS | 60.0% | |
| GAAGATCAGGGGCCACTGCA+CGG | - | chr1_1:59915188-59915207 | None:intergenic | 60.0% | |
| GTGCAGTGGCCCCTGATCTT+CGG | + | chr1_1:59915187-59915206 | Msa0032770:CDS | 60.0% | |
| TGCAGTGGCCCCTGATCTTC+GGG | + | chr1_1:59915188-59915207 | Msa0032770:CDS | 60.0% | |
| ACCGTAGCCCCGAAGATCAG+GGG | - | chr1_1:59915199-59915218 | None:intergenic | 60.0% | |
| CACCGTAGCCCCGAAGATCA+GGG | - | chr1_1:59915200-59915219 | None:intergenic | 60.0% | |
| TCACCGTAGCCCCGAAGATC+AGG | - | chr1_1:59915201-59915220 | None:intergenic | 60.0% | |
| CTCCAAGGGTTACCGTGCAG+TGG | + | chr1_1:59915173-59915192 | Msa0032770:CDS | 60.0% | |
| GAAGATCAGGGGCCACTGCA+CGG | - | chr1_1:59915188-59915207 | None:intergenic | 60.0% | |
| GTGCAGTGGCCCCTGATCTT+CGG | + | chr1_1:59915187-59915206 | Msa0032770:CDS | 60.0% | |
| TGCAGTGGCCCCTGATCTTC+GGG | + | chr1_1:59915188-59915207 | Msa0032770:CDS | 60.0% | |
| ACCGTAGCCCCGAAGATCAG+GGG | - | chr1_1:59915199-59915218 | None:intergenic | 60.0% | |
| CACCGTAGCCCCGAAGATCA+GGG | - | chr1_1:59915200-59915219 | None:intergenic | 60.0% | |
| TCACCGTAGCCCCGAAGATC+AGG | - | chr1_1:59915201-59915220 | None:intergenic | 60.0% | |
| GGCCACTGCACGGTAACCCT+TGG | - | chr1_1:59915178-59915197 | None:intergenic | 65.0% | |
| GCAGTGGCCCCTGATCTTCG+GGG | + | chr1_1:59915189-59915208 | Msa0032770:CDS | 65.0% | |
| GCCCCTGATCTTCGGGGCTA+CGG | + | chr1_1:59915195-59915214 | Msa0032770:CDS | 65.0% | |
| GGCCACTGCACGGTAACCCT+TGG | - | chr1_1:59915178-59915197 | None:intergenic | 65.0% | |
| GCAGTGGCCCCTGATCTTCG+GGG | + | chr1_1:59915189-59915208 | Msa0032770:CDS | 65.0% | |
| GCCCCTGATCTTCGGGGCTA+CGG | + | chr1_1:59915195-59915214 | Msa0032770:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 59915030 | 59916243 | 59915030 | ID=Msa0032770;Name=Msa0032770 |
| chr1_1 | mRNA | 59915030 | 59916243 | 59915030 | ID=Msa0032770-mRNA-1;Parent=Msa0032770;Name=Msa0032770-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|322 |
| chr1_1 | exon | 59915030 | 59915503 | 59915030 | ID=Msa0032770-mRNA-1:exon:18639;Parent=Msa0032770-mRNA-1 |
| chr1_1 | exon | 59915635 | 59915879 | 59915635 | ID=Msa0032770-mRNA-1:exon:18640;Parent=Msa0032770-mRNA-1 |
| chr1_1 | exon | 59915994 | 59916243 | 59915994 | ID=Msa0032770-mRNA-1:exon:18641;Parent=Msa0032770-mRNA-1 |
| chr1_1 | CDS | 59915030 | 59915503 | 59915030 | ID=Msa0032770-mRNA-1:cds;Parent=Msa0032770-mRNA-1 |
| chr1_1 | CDS | 59915635 | 59915879 | 59915635 | ID=Msa0032770-mRNA-1:cds;Parent=Msa0032770-mRNA-1 |
| chr1_1 | CDS | 59915994 | 59916243 | 59915994 | ID=Msa0032770-mRNA-1:cds;Parent=Msa0032770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
