AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1303150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303150 MtrunA17_Chr4g0073191 98.168 382 7 0 1 382 29 410 0.0 778
Msa1303150 MtrunA17_Chr3g0140081 30.263 380 223 13 17 368 1 366 3.82e-17 82.0
Msa1303150 MtrunA17_Chr7g0260211 34.122 296 151 9 118 372 175 467 3.10e-15 77.0
Msa1303150 MtrunA17_Chr4g0019631 31.746 252 148 8 87 323 37 279 1.64e-14 73.6
Msa1303150 MtrunA17_Chr1g0204831 30.738 244 136 6 158 371 207 447 5.57e-12 67.0
Msa1303150 MtrunA17_Chr1g0166381 30.043 233 126 6 173 371 231 460 8.27e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303150 AT5G57770.1 58.250 400 143 11 2 382 9 403 9.16e-135 391
Msa1303150 AT5G57770.2 58.104 327 119 9 2 315 9 330 4.18e-105 313
Msa1303150 AT3G22810.3 31.515 330 176 9 87 371 1 325 7.23e-25 103
Msa1303150 AT3G22810.1 29.243 383 209 12 40 371 92 463 1.10e-24 105
Msa1303150 AT3G22810.2 32.797 311 156 8 40 307 92 392 1.55e-23 101
Msa1303150 AT4G14740.1 32.550 298 157 7 115 371 174 468 4.37e-23 100
Msa1303150 AT4G14740.2 32.550 298 157 7 115 371 174 468 4.37e-23 100
Msa1303150 AT4G14740.3 32.881 295 154 7 115 368 35 326 7.05e-23 98.6
Msa1303150 AT4G14740.4 36.283 226 109 3 115 307 174 397 5.78e-20 91.3
Msa1303150 AT5G47440.1 30.357 280 166 9 115 370 111 385 1.05e-16 81.6
Msa1303150 AT5G43870.1 31.436 369 200 13 40 372 96 447 3.78e-16 80.1
Msa1303150 AT4G17350.1 28.014 282 177 8 115 374 112 389 1.62e-15 77.8
Msa1303150 AT5G43870.2 34.932 292 151 9 40 305 96 374 1.65e-14 74.7
Msa1303150 AT4G16670.1 29.965 287 161 10 115 368 129 408 1.16e-11 66.2
Msa1303150 AT4G16670.2 31.818 220 118 6 115 308 129 342 8.83e-11 63.2

Find 80 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAATAAAGAAATGGTTTA+AGG 0.192823 8_3:-65989443 Msa1303150:CDS
CTGCTATTGTAATTTAATTC+AGG 0.195574 8_3:+65989626 None:intergenic
TCATATAATTTCAGTAAAAT+TGG 0.235781 8_3:+65987657 None:intergenic
GAGGATCTTAGAAGTGTTAT+TGG 0.247047 8_3:-65989205 Msa1303150:CDS
GAATGGATGATGCAGATTTC+AGG 0.263694 8_3:-65989997 Msa1303150:CDS
TGGCTAACTGTAGCATTAAA+AGG 0.287338 8_3:-65988770 Msa1303150:intron
TAAATTACAATAGCAGTTTA+CGG 0.296909 8_3:-65989619 Msa1303150:CDS
TGGATTTCCTTTCACTTGCT+TGG 0.326888 8_3:-65990268 Msa1303150:CDS
CTAGGCTCGAATTGTTTGAT+AGG 0.330134 8_3:+65990179 None:intergenic
CAGCTGCAGCAGTGAGAGTT+AGG 0.331764 8_3:+65989149 None:intergenic
TATTGAAGACAACTACGATT+TGG 0.335481 8_3:-65988681 Msa1303150:CDS
AATAGCCTCTGCTGCTGCTT+TGG 0.340557 8_3:-65989275 Msa1303150:CDS
AGGATTATAGACACTGTTCT+TGG 0.349804 8_3:+65988242 None:intergenic
TGCTATTGTAATTTAATTCA+GGG 0.382516 8_3:+65989627 None:intergenic
ATTGAAGTCTAATGATCTTA+AGG 0.384539 8_3:-65989963 Msa1303150:intron
ACTAGCACTTGTGCCATTCA+TGG 0.391346 8_3:+65989177 None:intergenic
TTGGTGTAACTTTGCTGTAC+AGG 0.391695 8_3:-65990249 Msa1303150:CDS
CATGCAGCAATGTCCATTGC+AGG 0.399965 8_3:-65989370 Msa1303150:CDS
AATCTTGAGCATATGATTGA+TGG 0.426592 8_3:+65987706 None:intergenic
TTAAGATCATTAGACTTCAA+TGG 0.430741 8_3:+65989965 None:intergenic
TACATGTTATCTGATTGTTT+TGG 0.432430 8_3:-65987798 Msa1303150:CDS
AGTGATCCATGTTGTGGCTC+AGG 0.434842 8_3:+65990218 None:intergenic
ATGCATGCAGAGCTGTATAA+AGG 0.440766 8_3:-65987839 Msa1303150:CDS
AGGAAGATTGATTCTTGCAC+AGG 0.450333 8_3:-65988642 Msa1303150:CDS
AAATCGTAGTTGTCTTCAAT+AGG 0.457610 8_3:+65988683 None:intergenic
AAAGTATGTCAATAAAGAAA+TGG 0.463515 8_3:-65989450 Msa1303150:CDS
GGATCAAGGAACAGATTGAA+TGG 0.466276 8_3:-65988722 Msa1303150:CDS
TGCAAAAGTAGCTGAATCAA+TGG 0.476188 8_3:-65989239 Msa1303150:CDS
GGAAGAGCCATGGGGCTACT+AGG 0.478399 8_3:+65990161 None:intergenic
TTGTCTTCAATAGGCAAGAT+GGG 0.487903 8_3:+65988692 None:intergenic
AGTGGTAATATCTGCTTCCA+TGG 0.499258 8_3:+65989475 None:intergenic
GATCAAGGAACAGATTGAAT+GGG 0.501658 8_3:-65988721 Msa1303150:CDS
ATCTTCGTCGTTACAAGACA+TGG 0.507918 8_3:-65987736 Msa1303150:CDS
GTTGTCTTCAATAGGCAAGA+TGG 0.510367 8_3:+65988691 None:intergenic
TAGGCTCGAATTGTTTGATA+GGG 0.514312 8_3:+65990180 None:intergenic
GCCACACTTAAAGTAAGATC+AGG 0.526345 8_3:-65988743 Msa1303150:CDS
TGCTGCTGCAACCCCTGCAA+TGG 0.526734 8_3:+65989357 None:intergenic
ATCATATCATGTAGATGCCA+TGG 0.527791 8_3:-65989492 Msa1303150:intron
AGCTACCAAAGCAGCAGCAG+AGG 0.532052 8_3:+65989270 None:intergenic
TAACCTTAGCTTCACTGTTG+AGG 0.534080 8_3:+65988222 None:intergenic
GACTCAGGATGTGCATCTGA+AGG 0.534790 8_3:+65990293 None:intergenic
TTAAAGTAAGATCAGGATCA+AGG 0.540160 8_3:-65988736 Msa1303150:CDS
AATCCTCAACAGTGAAGCTA+AGG 0.541104 8_3:-65988225 Msa1303150:intron
AGATGCACATCCTGAGTCCA+TGG 0.541397 8_3:-65990288 Msa1303150:CDS
GTTATTGGCTCAGCCATGAA+TGG 0.544355 8_3:-65989190 Msa1303150:CDS
TCCTGATCTTACTTTAAGTG+TGG 0.557535 8_3:+65988742 None:intergenic
GAGCATATGATTGATGGTTG+TGG 0.559092 8_3:+65987712 None:intergenic
GCAAAAGTAGCTGAATCAAT+GGG 0.559749 8_3:-65989238 Msa1303150:CDS
CTCACCGTAGGAAGAGCCAT+GGG 0.559932 8_3:+65990152 None:intergenic
TAGCCCCATGGCTCTTCCTA+CGG 0.560768 8_3:-65990156 Msa1303150:intron
GTGATCCATGTTGTGGCTCA+GGG 0.562607 8_3:+65990219 None:intergenic
CAGATAACATGTATCATCCT+CGG 0.570436 8_3:+65987808 None:intergenic
AGTTACACCAAGCAAGTGAA+AGG 0.575345 8_3:+65990261 None:intergenic
AGCAAGTGAAAGGAAATCCA+TGG 0.584542 8_3:+65990271 None:intergenic
GAAAGGAAATCCATGGACTC+AGG 0.585901 8_3:+65990278 None:intergenic
ACTCAGGATGTGCATCTGAA+GGG 0.587610 8_3:+65990294 None:intergenic
ATCAATGGGAGCTAAGAAAG+AGG 0.593937 8_3:-65989224 Msa1303150:CDS
CTGAACCCTGAGCCACAACA+TGG 0.595899 8_3:-65990224 Msa1303150:CDS
ATGCAGCAATGTCCATTGCA+GGG 0.597636 8_3:-65989369 Msa1303150:CDS
CTCAGGATGTGCATCTGAAG+GGG 0.602490 8_3:+65990295 None:intergenic
TGAAGGGGATAGATTAAACT+CGG 0.616318 8_3:+65990310 None:intergenic
ACATAGATTGCAAAGAGCAG+AGG 0.616604 8_3:-65989395 Msa1303150:CDS
AGAACAAGTGATCCATGTTG+TGG 0.619287 8_3:+65990212 None:intergenic
ATCAAGGAACAGATTGAATG+GGG 0.619443 8_3:-65988720 Msa1303150:CDS
ACTCACCGTAGGAAGAGCCA+TGG 0.631267 8_3:+65990151 None:intergenic
TGTCTTCAATAGGCAAGATG+GGG 0.632757 8_3:+65988693 None:intergenic
CACTTTCAAGCTAGACATGG+TGG 0.633111 8_3:-65987762 Msa1303150:CDS
GGAAGATTGATTCTTGCACA+GGG 0.639974 8_3:-65988641 Msa1303150:CDS
TACAGGTTATACTCATGATG+AGG 0.654471 8_3:-65987999 Msa1303150:intron
ATTCGAGCCTAGTAGCCCCA+TGG 0.664825 8_3:-65990168 Msa1303150:CDS
TGCAGCAATGTCCATTGCAG+GGG 0.667723 8_3:-65989368 Msa1303150:CDS
AGGCACTTTCAAGCTAGACA+TGG 0.677280 8_3:-65987765 Msa1303150:CDS
GTATAAAGGTTCAGAAACCG+AGG 0.678370 8_3:-65987825 Msa1303150:CDS
AGATCATTAGACTTCAATGG+AGG 0.678880 8_3:+65989968 None:intergenic
ACAGGGTGCTGAGTTATATG+TGG 0.679997 8_3:-65988624 Msa1303150:CDS
TTATATGTGGAATCACCAGA+AGG 0.687221 8_3:-65988611 Msa1303150:intron
GTCTTCAATAGGCAAGATGG+GGG 0.690345 8_3:+65988694 None:intergenic
TCTTCGTCGTTACAAGACAT+GGG 0.693504 8_3:-65987735 Msa1303150:CDS
TCAAGGAACAGATTGAATGG+GGG 0.721493 8_3:-65988719 Msa1303150:CDS
TCACCGTAGGAAGAGCCATG+GGG 0.748512 8_3:+65990153 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAGTTTATTTTCTAT+TGG + chr8_3:65989088-65989107 None:intergenic 10.0%
!! CATAAATAATTAAAAGAAAA+GGG + chr8_3:65990061-65990080 None:intergenic 10.0%
!! TCATAAATAATTAAAAGAAA+AGG + chr8_3:65990062-65990081 None:intergenic 10.0%
!! TAGAAAAACATATAATACAT+AGG + chr8_3:65989680-65989699 None:intergenic 15.0%
!!! TTAATTCTTTATGGTATTTT+TGG + chr8_3:65989857-65989876 None:intergenic 15.0%
!! TTAAGTTAAGCTTAATTTAA+TGG + chr8_3:65989885-65989904 None:intergenic 15.0%
!! TGCTATTGTAATTTAATTCA+GGG + chr8_3:65988360-65988379 None:intergenic 20.0%
!! TAAATTACAATAGCAGTTTA+CGG - chr8_3:65988365-65988384 Msa1303150:intron 20.0%
!! AAAGTATGTCAATAAAGAAA+TGG - chr8_3:65988534-65988553 Msa1303150:intron 20.0%
!! TTTAGTGTAATTATATGTGT+CGG - chr8_3:65988961-65988980 Msa1303150:intron 20.0%
!!! AAAAGTTTATTTTCTATTGG+TGG + chr8_3:65989085-65989104 None:intergenic 20.0%
!! AAGTTAAGAATTATGACATT+TGG + chr8_3:65989430-65989449 None:intergenic 20.0%
!! CTATATATGGTTATACTAAT+TGG + chr8_3:65989505-65989524 None:intergenic 20.0%
!! TAACTTAAAAGTCATACAAA+TGG + chr8_3:65989594-65989613 None:intergenic 20.0%
!! ATTTCAATTATGTCTTAACA+GGG - chr8_3:65989710-65989729 Msa1303150:intron 20.0%
!!! ATTTTAATTTTTCTGACCTT+TGG - chr8_3:65989941-65989960 Msa1303150:intron 20.0%
! AATATTGATCAAAAGTGAGT+AGG + chr8_3:65987934-65987953 None:intergenic 25.0%
! TTAAGATCATTAGACTTCAA+TGG + chr8_3:65988022-65988041 None:intergenic 25.0%
! ATTGAAGTCTAATGATCTTA+AGG - chr8_3:65988021-65988040 Msa1303150:intron 25.0%
! CTGCTATTGTAATTTAATTC+AGG + chr8_3:65988361-65988380 None:intergenic 25.0%
!! ATATTTTTCACTCAGTTTCA+TGG - chr8_3:65988404-65988423 Msa1303150:intron 25.0%
! ATCTACATGATATGATATGA+TGG + chr8_3:65988488-65988507 None:intergenic 25.0%
!! TTTATTGACATACTTTTCAG+TGG + chr8_3:65988530-65988549 None:intergenic 25.0%
! GTCAATAAAGAAATGGTTTA+AGG - chr8_3:65988541-65988560 Msa1303150:intron 25.0%
! TCCATAATAGATGAAATGAA+TGG - chr8_3:65989140-65989159 Msa1303150:intron 25.0%
! TCCATTCATTTCATCTATTA+TGG + chr8_3:65989144-65989163 None:intergenic 25.0%
! CTGTTACTGAAAAAAATTGT+TGG - chr8_3:65989194-65989213 Msa1303150:CDS 25.0%
!!! TTGGATTTTGACTTTGAAAA+AGG - chr8_3:65989322-65989341 Msa1303150:CDS 25.0%
! ATATGGTTATACTAATTGGA+TGG + chr8_3:65989501-65989520 None:intergenic 25.0%
! CTTAATAATTCTCCTTCTTT+AGG + chr8_3:65989528-65989547 None:intergenic 25.0%
!! GAAAGTCAAACTTTTGTAAT+AGG - chr8_3:65989622-65989641 Msa1303150:CDS 25.0%
! GATTTCAATTATGTCTTAAC+AGG - chr8_3:65989709-65989728 Msa1303150:intron 25.0%
! ATGGTGTCTTTAATTCTTTA+TGG + chr8_3:65989866-65989885 None:intergenic 25.0%
!! GTAGTGGTTGTTATTATTAT+AGG - chr8_3:65990109-65990128 Msa1303150:intron 25.0%
!! TACATGTTATCTGATTGTTT+TGG - chr8_3:65990186-65990205 Msa1303150:CDS 25.0%
!! TATGAAAAAGAGTGCTAGAA+TGG - chr8_3:65987970-65987989 Msa1303150:CDS 30.0%
TGTCATAGAACTGAATTAGA+TGG + chr8_3:65988067-65988086 None:intergenic 30.0%
GACATACTAAACACAAAACA+CGG - chr8_3:65988083-65988102 Msa1303150:intron 30.0%
TGACGCATGAAAATAATTTG+TGG - chr8_3:65988122-65988141 Msa1303150:intron 30.0%
!!! ATGTTCTGTTTTTTCAGTCA+TGG - chr8_3:65988311-65988330 Msa1303150:intron 30.0%
!!! TGTTTTTTCAGTCATGGATA+TGG - chr8_3:65988317-65988336 Msa1303150:intron 30.0%
ATAGCAGTTTACGGAAAAAA+TGG - chr8_3:65988374-65988393 Msa1303150:intron 30.0%
TAGCAGTTTACGGAAAAAAT+GGG - chr8_3:65988375-65988394 Msa1303150:intron 30.0%
TAATTACACTAAATCGTGTC+CGG + chr8_3:65988954-65988973 None:intergenic 30.0%
GATAATACCCAAAACTATGA+AGG + chr8_3:65989017-65989036 None:intergenic 30.0%
!! GTTTATTTTCTATTGGTGGA+GGG + chr8_3:65989081-65989100 None:intergenic 30.0%
!! AGTTTATTTTCTATTGGTGG+AGG + chr8_3:65989082-65989101 None:intergenic 30.0%
AACAGATTGTACATAGAGTA+CGG + chr8_3:65989179-65989198 None:intergenic 30.0%
TTAAAGTAAGATCAGGATCA+AGG - chr8_3:65989248-65989267 Msa1303150:CDS 30.0%
AAATCGTAGTTGTCTTCAAT+AGG + chr8_3:65989304-65989323 None:intergenic 30.0%
TATTGAAGACAACTACGATT+TGG - chr8_3:65989303-65989322 Msa1303150:CDS 30.0%
AACCATATATAGCCTAAAGA+AGG - chr8_3:65989513-65989532 Msa1303150:intron 30.0%
! CTACTTTGATTTAGGTGAAT+AGG - chr8_3:65989811-65989830 Msa1303150:intron 30.0%
ATGATCTTTACTCAAACTAC+AGG - chr8_3:65989968-65989987 Msa1303150:CDS 30.0%
TAATCTGCTAAAAAGCAAGA+AGG - chr8_3:65990013-65990032 Msa1303150:intron 30.0%
TAGAATGCACGAATAACTTA+TGG - chr8_3:65990087-65990106 Msa1303150:intron 30.0%
!!! ATTGTTTTGGCAACAAGAAA+AGG - chr8_3:65990199-65990218 Msa1303150:CDS 30.0%
AATCTTGAGCATATGATTGA+TGG + chr8_3:65990281-65990300 None:intergenic 30.0%
TGAAGGGGATAGATTAAACT+CGG + chr8_3:65987677-65987696 None:intergenic 35.0%
TAGGCTCGAATTGTTTGATA+GGG + chr8_3:65987807-65987826 None:intergenic 35.0%
TTGATCAAAAGTGAGTAGGT+TGG + chr8_3:65987930-65987949 None:intergenic 35.0%
AGATCATTAGACTTCAATGG+AGG + chr8_3:65988019-65988038 None:intergenic 35.0%
ATCATATCATGTAGATGCCA+TGG - chr8_3:65988492-65988511 Msa1303150:intron 35.0%
TGCAAAAGTAGCTGAATCAA+TGG - chr8_3:65988745-65988764 Msa1303150:CDS 35.0%
GCAAAAGTAGCTGAATCAAT+GGG - chr8_3:65988746-65988765 Msa1303150:CDS 35.0%
!! GAGGATCTTAGAAGTGTTAT+TGG - chr8_3:65988779-65988798 Msa1303150:intron 35.0%
AGTGTAATTATATGTGTCGG+CGG - chr8_3:65988964-65988983 Msa1303150:intron 35.0%
ATACCCAAAACTATGAAGGA+CGG + chr8_3:65989013-65989032 None:intergenic 35.0%
TGGCTAACTGTAGCATTAAA+AGG - chr8_3:65989214-65989233 Msa1303150:CDS 35.0%
TCCTGATCTTACTTTAAGTG+TGG + chr8_3:65989245-65989264 None:intergenic 35.0%
GATCAAGGAACAGATTGAAT+GGG - chr8_3:65989263-65989282 Msa1303150:CDS 35.0%
ATCAAGGAACAGATTGAATG+GGG - chr8_3:65989264-65989283 Msa1303150:CDS 35.0%
TTGTCTTCAATAGGCAAGAT+GGG + chr8_3:65989295-65989314 None:intergenic 35.0%
TTATATGTGGAATCACCAGA+AGG - chr8_3:65989373-65989392 Msa1303150:CDS 35.0%
!! ATTGCATTGAAAGTACCTTC+TGG + chr8_3:65989391-65989410 None:intergenic 35.0%
! GAATTATGACATTTGGAGCA+GGG + chr8_3:65989423-65989442 None:intergenic 35.0%
! AGAATTATGACATTTGGAGC+AGG + chr8_3:65989424-65989443 None:intergenic 35.0%
! ATACTAATTGGATGGTAGTG+TGG + chr8_3:65989493-65989512 None:intergenic 35.0%
CTCCTTCTTTAGGCTATATA+TGG + chr8_3:65989518-65989537 None:intergenic 35.0%
AGGATTATAGACACTGTTCT+TGG + chr8_3:65989745-65989764 None:intergenic 35.0%
TGAAGCTAAGGTTAGGATTA+TGG - chr8_3:65989771-65989790 Msa1303150:intron 35.0%
! GTGTCTGTCTACTTTGATTT+AGG - chr8_3:65989803-65989822 Msa1303150:intron 35.0%
ATGATTACATCTTGCTTCAC+TGG - chr8_3:65989909-65989928 Msa1303150:intron 35.0%
AGTAAAGATCATTGCTCCAA+AGG + chr8_3:65989960-65989979 None:intergenic 35.0%
TACAGGTTATACTCATGATG+AGG - chr8_3:65989985-65990004 Msa1303150:CDS 35.0%
CAGATAACATGTATCATCCT+CGG + chr8_3:65990179-65990198 None:intergenic 35.0%
AGCAAGTGAAAGGAAATCCA+TGG + chr8_3:65987716-65987735 None:intergenic 40.0%
TGGATTTCCTTTCACTTGCT+TGG - chr8_3:65987716-65987735 Msa1303150:CDS 40.0%
AGTTACACCAAGCAAGTGAA+AGG + chr8_3:65987726-65987745 None:intergenic 40.0%
! TTGGTGTAACTTTGCTGTAC+AGG - chr8_3:65987735-65987754 Msa1303150:CDS 40.0%
AGAACAAGTGATCCATGTTG+TGG + chr8_3:65987775-65987794 None:intergenic 40.0%
CTAGGCTCGAATTGTTTGAT+AGG + chr8_3:65987808-65987827 None:intergenic 40.0%
TTTGAACTTAGACTCACCGT+AGG + chr8_3:65987847-65987866 None:intergenic 40.0%
GAATGGATGATGCAGATTTC+AGG - chr8_3:65987987-65988006 Msa1303150:CDS 40.0%
TAAACACAAAACACGGACAC+TGG - chr8_3:65988090-65988109 Msa1303150:intron 40.0%
TTTGTGTGTCTGATAAGCGA+CGG + chr8_3:65988208-65988227 None:intergenic 40.0%
AGTGGTAATATCTGCTTCCA+TGG + chr8_3:65988512-65988531 None:intergenic 40.0%
ACATAGATTGCAAAGAGCAG+AGG - chr8_3:65988589-65988608 Msa1303150:intron 40.0%
ATCAATGGGAGCTAAGAAAG+AGG - chr8_3:65988760-65988779 Msa1303150:CDS 40.0%
! GTGTAATTATATGTGTCGGC+GGG - chr8_3:65988965-65988984 Msa1303150:intron 40.0%
! TGTCCGTCCTTCATAGTTTT+GGG - chr8_3:65989007-65989026 Msa1303150:intron 40.0%
GCCACACTTAAAGTAAGATC+AGG - chr8_3:65989241-65989260 Msa1303150:CDS 40.0%
GGATCAAGGAACAGATTGAA+TGG - chr8_3:65989262-65989281 Msa1303150:CDS 40.0%
TCAAGGAACAGATTGAATGG+GGG - chr8_3:65989265-65989284 Msa1303150:CDS 40.0%
TGTCTTCAATAGGCAAGATG+GGG + chr8_3:65989294-65989313 None:intergenic 40.0%
GTTGTCTTCAATAGGCAAGA+TGG + chr8_3:65989296-65989315 None:intergenic 40.0%
! AGGAAGATTGATTCTTGCAC+AGG - chr8_3:65989342-65989361 Msa1303150:CDS 40.0%
! GGAAGATTGATTCTTGCACA+GGG - chr8_3:65989343-65989362 Msa1303150:CDS 40.0%
AATCCTCAACAGTGAAGCTA+AGG - chr8_3:65989759-65989778 Msa1303150:intron 40.0%
TAACCTTAGCTTCACTGTTG+AGG + chr8_3:65989765-65989784 None:intergenic 40.0%
TCAACAGTGAAGCTAAGGTT+AGG - chr8_3:65989764-65989783 Msa1303150:intron 40.0%
GCACGAATAACTTATGGTAG+TGG - chr8_3:65990093-65990112 Msa1303150:intron 40.0%
ATGCATGCAGAGCTGTATAA+AGG - chr8_3:65990145-65990164 Msa1303150:intron 40.0%
GTATAAAGGTTCAGAAACCG+AGG - chr8_3:65990159-65990178 Msa1303150:CDS 40.0%
ATCTTCGTCGTTACAAGACA+TGG - chr8_3:65990248-65990267 Msa1303150:CDS 40.0%
TCTTCGTCGTTACAAGACAT+GGG - chr8_3:65990249-65990268 Msa1303150:CDS 40.0%
! GAGCATATGATTGATGGTTG+TGG + chr8_3:65990275-65990294 None:intergenic 40.0%
ACTCAGGATGTGCATCTGAA+GGG + chr8_3:65987693-65987712 None:intergenic 45.0%
GAAAGGAAATCCATGGACTC+AGG + chr8_3:65987709-65987728 None:intergenic 45.0%
ATGCAGCAATGTCCATTGCA+GGG - chr8_3:65988615-65988634 Msa1303150:CDS 45.0%
!! GTTATTGGCTCAGCCATGAA+TGG - chr8_3:65988794-65988813 Msa1303150:intron 45.0%
! ACTAGCACTTGTGCCATTCA+TGG + chr8_3:65988810-65988829 None:intergenic 45.0%
GGGACTATGAAGCACGAATA+CGG - chr8_3:65988919-65988938 Msa1303150:intron 45.0%
GGACTATGAAGCACGAATAC+GGG - chr8_3:65988920-65988939 Msa1303150:intron 45.0%
TATGAAGGACGGACACTCAT+TGG + chr8_3:65989002-65989021 None:intergenic 45.0%
! GTGTCCGTCCTTCATAGTTT+TGG - chr8_3:65989006-65989025 Msa1303150:intron 45.0%
GTCTTCAATAGGCAAGATGG+GGG + chr8_3:65989293-65989312 None:intergenic 45.0%
!! ACAGGGTGCTGAGTTATATG+TGG - chr8_3:65989360-65989379 Msa1303150:CDS 45.0%
AGGCACTTTCAAGCTAGACA+TGG - chr8_3:65990219-65990238 Msa1303150:CDS 45.0%
CACTTTCAAGCTAGACATGG+TGG - chr8_3:65990222-65990241 Msa1303150:CDS 45.0%
!!! TTTAATTAATACAATTATTT+TGG - chr8_3:65988898-65988917 Msa1303150:intron 5.0%
!!! TTAATTAATACAATTATTTT+GGG - chr8_3:65988899-65988918 Msa1303150:intron 5.0%
!!! TATTTTTTAAAATTCAATAT+TGG - chr8_3:65989114-65989133 Msa1303150:intron 5.0%
CTCAGGATGTGCATCTGAAG+GGG + chr8_3:65987692-65987711 None:intergenic 50.0%
GACTCAGGATGTGCATCTGA+AGG + chr8_3:65987694-65987713 None:intergenic 50.0%
AGATGCACATCCTGAGTCCA+TGG - chr8_3:65987696-65987715 Msa1303150:CDS 50.0%
GTGATCCATGTTGTGGCTCA+GGG + chr8_3:65987768-65987787 None:intergenic 50.0%
AGTGATCCATGTTGTGGCTC+AGG + chr8_3:65987769-65987788 None:intergenic 50.0%
CATGCAGCAATGTCCATTGC+AGG - chr8_3:65988614-65988633 Msa1303150:CDS 50.0%
TGCAGCAATGTCCATTGCAG+GGG - chr8_3:65988616-65988635 Msa1303150:CDS 50.0%
! AATAGCCTCTGCTGCTGCTT+TGG - chr8_3:65988709-65988728 Msa1303150:CDS 50.0%
CTGAACCCTGAGCCACAACA+TGG - chr8_3:65987760-65987779 Msa1303150:CDS 55.0%
ATTCGAGCCTAGTAGCCCCA+TGG - chr8_3:65987816-65987835 Msa1303150:CDS 55.0%
TAGCCCCATGGCTCTTCCTA+CGG - chr8_3:65987828-65987847 Msa1303150:CDS 55.0%
TCACCGTAGGAAGAGCCATG+GGG + chr8_3:65987834-65987853 None:intergenic 55.0%
CTCACCGTAGGAAGAGCCAT+GGG + chr8_3:65987835-65987854 None:intergenic 55.0%
ACTCACCGTAGGAAGAGCCA+TGG + chr8_3:65987836-65987855 None:intergenic 55.0%
AGCTACCAAAGCAGCAGCAG+AGG + chr8_3:65988717-65988736 None:intergenic 55.0%
CAGCTGCAGCAGTGAGAGTT+AGG + chr8_3:65988838-65988857 None:intergenic 55.0%
ACGAATACGGGCATAGACGC+CGG - chr8_3:65988932-65988951 Msa1303150:intron 55.0%
GGAAGAGCCATGGGGCTACT+AGG + chr8_3:65987826-65987845 None:intergenic 60.0%
TGCTGCTGCAACCCCTGCAA+TGG + chr8_3:65988630-65988649 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 65987667 65990339 65987667 ID=Msa1303150;Name=Msa1303150
chr8_3 mRNA 65987667 65990339 65987667 ID=Msa1303150-mRNA-1;Parent=Msa1303150;Name=Msa1303150-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|8|0|382
chr8_3 exon 65990157 65990339 65990157 ID=Msa1303150-mRNA-1:exon:20103;Parent=Msa1303150-mRNA-1
chr8_3 exon 65989964 65990026 65989964 ID=Msa1303150-mRNA-1:exon:20102;Parent=Msa1303150-mRNA-1
chr8_3 exon 65989610 65989678 65989610 ID=Msa1303150-mRNA-1:exon:20101;Parent=Msa1303150-mRNA-1
chr8_3 exon 65989143 65989500 65989143 ID=Msa1303150-mRNA-1:exon:20100;Parent=Msa1303150-mRNA-1
chr8_3 exon 65988612 65988779 65988612 ID=Msa1303150-mRNA-1:exon:20099;Parent=Msa1303150-mRNA-1
chr8_3 exon 65988226 65988275 65988226 ID=Msa1303150-mRNA-1:exon:20098;Parent=Msa1303150-mRNA-1
chr8_3 exon 65987968 65988016 65987968 ID=Msa1303150-mRNA-1:exon:20097;Parent=Msa1303150-mRNA-1
chr8_3 exon 65987667 65987875 65987667 ID=Msa1303150-mRNA-1:exon:20096;Parent=Msa1303150-mRNA-1
chr8_3 CDS 65990157 65990339 65990157 ID=Msa1303150-mRNA-1:cds;Parent=Msa1303150-mRNA-1
chr8_3 CDS 65989964 65990026 65989964 ID=Msa1303150-mRNA-1:cds;Parent=Msa1303150-mRNA-1
chr8_3 CDS 65989610 65989678 65989610 ID=Msa1303150-mRNA-1:cds;Parent=Msa1303150-mRNA-1
chr8_3 CDS 65989143 65989500 65989143 ID=Msa1303150-mRNA-1:cds;Parent=Msa1303150-mRNA-1
chr8_3 CDS 65988612 65988779 65988612 ID=Msa1303150-mRNA-1:cds;Parent=Msa1303150-mRNA-1
chr8_3 CDS 65988226 65988275 65988226 ID=Msa1303150-mRNA-1:cds;Parent=Msa1303150-mRNA-1
chr8_3 CDS 65987968 65988016 65987968 ID=Msa1303150-mRNA-1:cds;Parent=Msa1303150-mRNA-1
chr8_3 CDS 65987667 65987875 65987667 ID=Msa1303150-mRNA-1:cds;Parent=Msa1303150-mRNA-1
Gene Sequence

>Msa1303150

ATGGCTTCCGAGTTTAATCTATCCCCTTCAGATGCACATCCTGAGTCCATGGATTTCCTTTCACTTGCTTGGTGTAACTTTGCTGTACAGGCTCTGAACCCTGAGCCACAACATGGATCACTTGTTCTACTTGATAACCCTATCAAACAATTCGAGCCTAGTAGCCCCATGGCTCTTCCTACGAGTGCTAGAATGGATGATGCAGATTTCAGGTCTATACCTCCATTGAAGTCTAATGATCTTAAGTCATGGATATGGATGCAGCAAGCAATGCACCCTGAATTAAATTACAATAGCAGTTTACGGAAAAAATGGATGCCATGGAAGCAGATATTACCACTGAAAAGTATGTCAATAAAGAAATGGTTTAAGGAAATAAAGATGAAGAAGAAAGAAGAACATAGATTGCAAAGAGCAGAGGTGCATGCAGCAATGTCCATTGCAGGGGTTGCAGCAGCACTTGCTGCAATTGCTTCTGAAAATTCAAAAAAAGAGTCAAATGAAGATAGAGAGAAAGCAATAGCCTCTGCTGCTGCTTTGGTAGCTGCTCAGTGTGCAAAAGTAGCTGAATCAATGGGAGCTAAGAAAGAGGATCTTAGAAGTGTTATTGGCTCAGCCATGAATGGCACAAGTGCTAGTGATATCCTAACTCTCACTGCTGCAGCTGCAACATCATTAAAAGGAGCAGCCACACTTAAAGTAAGATCAGGATCAAGGAACAGATTGAATGGGGGAGCCCCCATCTTGCCTATTGAAGACAACTACGATTTGGATTTTGACTTTGAAAAAGGAAGATTGATTCTTGCACAGGGTGCTGAGTTATATGTGGAATCACCAGAAGGGAAGTACATGCCAAGAACAGTGTCTATAATCCTCAACAGTGAAGCTAAGGTTATACTCATGATGAGGAAGCATAATCTGCTAAAAAGCAAGAAGGAGTGTATTGTAATGAATATGCATGCAGAGCTGTATAAAGGTTCAGAAACCGAGGATGATACATGTTATCTGATTGTTTTGGCAACAAGAAAAGGCACTTTCAAGCTAGACATGGTGGATGATCTTCGTCGTTACAAGACATGGGCCACAACCATCAATCATATGCTCAAGATTTCTACTTCTTTTGCAAAATATGAGCTCCAATTTTACTGA

Protein sequence

>Msa1303150

MASEFNLSPSDAHPESMDFLSLAWCNFAVQALNPEPQHGSLVLLDNPIKQFEPSSPMALPTSARMDDADFRSIPPLKSNDLKSWIWMQQAMHPELNYNSSLRKKWMPWKQILPLKSMSIKKWFKEIKMKKKEEHRLQRAEVHAAMSIAGVAAALAAIASENSKKESNEDREKAIASAAALVAAQCAKVAESMGAKKEDLRSVIGSAMNGTSASDILTLTAAAATSLKGAATLKVRSGSRNRLNGGAPILPIEDNYDLDFDFEKGRLILAQGAELYVESPEGKYMPRTVSIILNSEAKVILMMRKHNLLKSKKECIVMNMHAELYKGSETEDDTCYLIVLATRKGTFKLDMVDDLRRYKTWATTINHMLKISTSFAKYELQFY*