AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1334000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334000 MtrunA17_Chr4g0073191 97.644 382 9 0 1 382 29 410 0.0 775
Msa1334000 MtrunA17_Chr3g0140081 30.263 380 223 13 17 368 1 366 1.93e-17 83.2
Msa1334000 MtrunA17_Chr7g0260211 34.459 296 150 9 118 372 175 467 9.51e-16 78.6
Msa1334000 MtrunA17_Chr4g0019631 31.746 252 148 8 87 323 37 279 1.75e-14 73.6
Msa1334000 MtrunA17_Chr1g0204831 31.148 244 135 6 158 371 207 447 2.31e-12 68.2
Msa1334000 MtrunA17_Chr1g0166381 30.041 243 133 6 163 371 221 460 2.96e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334000 AT5G57770.1 58.500 400 142 11 2 382 9 403 1.30e-135 393
Msa1334000 AT5G57770.2 58.410 327 118 9 2 315 9 330 7.75e-106 315
Msa1334000 AT3G22810.3 31.818 330 175 9 87 371 1 325 2.79e-25 105
Msa1334000 AT3G22810.1 29.504 383 208 12 40 371 92 463 4.04e-25 106
Msa1334000 AT3G22810.2 33.119 311 155 8 40 307 92 392 6.05e-24 102
Msa1334000 AT4G14740.1 32.886 298 156 7 115 371 174 468 1.25e-23 102
Msa1334000 AT4G14740.2 32.886 298 156 7 115 371 174 468 1.25e-23 102
Msa1334000 AT4G14740.3 33.220 295 153 7 115 368 35 326 2.46e-23 99.8
Msa1334000 AT4G14740.4 36.726 226 108 3 115 307 174 397 1.84e-20 92.8
Msa1334000 AT5G47440.1 30.357 280 166 9 115 370 111 385 9.04e-17 81.6
Msa1334000 AT5G43870.1 32.022 356 190 12 52 372 109 447 1.61e-16 81.3
Msa1334000 AT4G17350.1 28.014 282 177 8 115 374 112 389 1.11e-15 78.6
Msa1334000 AT5G43870.2 35.842 279 141 8 52 305 109 374 6.95e-15 75.9
Msa1334000 AT4G16670.1 29.965 287 161 10 115 368 129 408 9.59e-12 66.6
Msa1334000 AT4G16670.2 31.818 220 118 6 115 308 129 342 8.51e-11 63.2

Find 80 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAATAAAGAAATGGTTTA+AGG 0.192823 8_4:+54285682 Msa1334000:CDS
CTGCTATTGTAATTTAATTC+AGG 0.195574 8_4:-54285499 None:intergenic
TCATATAATTTCAGTAAAAT+TGG 0.235781 8_4:-54288549 None:intergenic
GAGGATCTTAGAAGTGTTAT+TGG 0.248985 8_4:+54285920 Msa1334000:CDS
GAATGGATGATGCAGATTTC+AGG 0.263694 8_4:+54285128 Msa1334000:CDS
TGGCTAACTGTAGCATTAAA+AGG 0.287338 8_4:+54286355 Msa1334000:intron
TAAATTACAATAGCAGTTTA+CGG 0.296909 8_4:+54285506 Msa1334000:CDS
TGGATTTCCTTTCACTTGCT+TGG 0.326888 8_4:+54284857 Msa1334000:CDS
CAGCTGCAGCAGTGAGAGTT+AGG 0.331764 8_4:-54285976 None:intergenic
TATTGAAGACAACTACGATT+TGG 0.335481 8_4:+54286444 Msa1334000:CDS
AATAGCCTCTGCTGCTGCTT+TGG 0.340557 8_4:+54285850 Msa1334000:CDS
AGGATTATAGACACTGTTCT+TGG 0.349804 8_4:-54286886 None:intergenic
CTAGGCTCGAATTGTTTGAT+AGG 0.355990 8_4:-54284946 None:intergenic
TGCTATTGTAATTTAATTCA+GGG 0.382516 8_4:-54285498 None:intergenic
ATTGAAGTCTAATGATCTTA+AGG 0.384539 8_4:+54285162 Msa1334000:CDS
ACTAGCACTTGTGCCATTCA+TGG 0.391346 8_4:-54285948 None:intergenic
TTGGTGTAACTTTGCTGTAC+AGG 0.391695 8_4:+54284876 Msa1334000:CDS
CATGCAGCAATGTCCATTGC+AGG 0.399965 8_4:+54285755 Msa1334000:CDS
AATCTTGAGCATATGATTGA+TGG 0.426592 8_4:-54288500 None:intergenic
TTAAGATCATTAGACTTCAA+TGG 0.430741 8_4:-54285160 None:intergenic
TACATGTTATCTGATTGTTT+TGG 0.432430 8_4:+54288408 Msa1334000:CDS
AGTGATCCATGTTGTGGCTC+AGG 0.434842 8_4:-54284907 None:intergenic
ATGCATGCAGAGCTGTATAA+AGG 0.440766 8_4:+54288367 Msa1334000:CDS
AGGAAGATTGATTCTTGCAC+AGG 0.450333 8_4:+54286483 Msa1334000:CDS
AAATCGTAGTTGTCTTCAAT+AGG 0.457610 8_4:-54286442 None:intergenic
AAAGTATGTCAATAAAGAAA+TGG 0.463515 8_4:+54285675 Msa1334000:CDS
GGATCAAGGAACAGATTGAA+TGG 0.466276 8_4:+54286403 Msa1334000:CDS
TGCAAAAGTAGCTGAATCAA+TGG 0.476188 8_4:+54285886 Msa1334000:CDS
GGAAGAGCCATGGGGCTACT+AGG 0.478399 8_4:-54284964 None:intergenic
TTGTCTTCAATAGGCAAGAT+GGG 0.487903 8_4:-54286433 None:intergenic
AGTGGTAATATCTGCTTCCA+TGG 0.499258 8_4:-54285650 None:intergenic
GATCAAGGAACAGATTGAAT+GGG 0.501658 8_4:+54286404 Msa1334000:CDS
ATCTTCGTCGTTACAAGACA+TGG 0.507918 8_4:+54288470 Msa1334000:CDS
GTTGTCTTCAATAGGCAAGA+TGG 0.510367 8_4:-54286434 None:intergenic
ATCATATCATATAGATGCCA+TGG 0.511703 8_4:+54285633 Msa1334000:intron
GCCACACTTAAAGTAAGATC+AGG 0.526345 8_4:+54286382 Msa1334000:CDS
TGCTGCTGCAACCCCTGCAA+TGG 0.526734 8_4:-54285768 None:intergenic
AGCTACCAAAGCAGCAGCAG+AGG 0.532052 8_4:-54285855 None:intergenic
TAACCTTAGCTTCACTGTTG+AGG 0.534080 8_4:-54286906 None:intergenic
GACTCAGGATGTGCATCTGA+AGG 0.534790 8_4:-54284832 None:intergenic
TAGGCTCGAATTGTTTGATA+GGG 0.538597 8_4:-54284945 None:intergenic
TTAAAGTAAGATCAGGATCA+AGG 0.540160 8_4:+54286389 Msa1334000:CDS
AATCCTCAACAGTGAAGCTA+AGG 0.541104 8_4:+54286903 Msa1334000:CDS
AGATGCACATCCTGAGTCCA+TGG 0.541397 8_4:+54284837 Msa1334000:CDS
GTTATTGGCTCAGCCATGAA+TGG 0.544355 8_4:+54285935 Msa1334000:CDS
TCCTGATCTTACTTTAAGTG+TGG 0.557535 8_4:-54286383 None:intergenic
GAGCATATGATTGATGGTTG+TGG 0.559092 8_4:-54288494 None:intergenic
GCAAAAGTAGCTGAATCAAT+GGG 0.559749 8_4:+54285887 Msa1334000:CDS
CTCACCGTAGGAAGAGCCAT+GGG 0.559932 8_4:-54284973 None:intergenic
TAGCCCCATGGCTCTTCCTA+CGG 0.560768 8_4:+54284969 Msa1334000:CDS
GTGATCCATGTTGTGGCTCA+GGG 0.562607 8_4:-54284906 None:intergenic
CAGATAACATGTATCATCCT+CGG 0.570436 8_4:-54288398 None:intergenic
AGTTACACCAAGCAAGTGAA+AGG 0.575345 8_4:-54284864 None:intergenic
AGCAAGTGAAAGGAAATCCA+TGG 0.584542 8_4:-54284854 None:intergenic
GAAAGGAAATCCATGGACTC+AGG 0.585901 8_4:-54284847 None:intergenic
ACTCAGGATGTGCATCTGAA+GGG 0.587610 8_4:-54284831 None:intergenic
CTGAACCCTGAGCCACAACA+TGG 0.595899 8_4:+54284901 Msa1334000:CDS
ATGCAGCAATGTCCATTGCA+GGG 0.597636 8_4:+54285756 Msa1334000:CDS
CTCAGGATGTGCATCTGAAG+GGG 0.602490 8_4:-54284830 None:intergenic
TGAAGGGGATAGATTAAACT+CGG 0.616318 8_4:-54284815 None:intergenic
ACATAGATTGCAAAGAGCAG+AGG 0.616604 8_4:+54285730 Msa1334000:CDS
AGAACAAGTGATCCATGTTG+TGG 0.619287 8_4:-54284913 None:intergenic
ATCAAGGAACAGATTGAATG+GGG 0.619443 8_4:+54286405 Msa1334000:CDS
ACTCACCGTAGGAAGAGCCA+TGG 0.631267 8_4:-54284974 None:intergenic
TGTCTTCAATAGGCAAGATG+GGG 0.632757 8_4:-54286432 None:intergenic
CACTTTCAAGCTAGACATGG+TGG 0.633111 8_4:+54288444 Msa1334000:CDS
GGAAGATTGATTCTTGCACA+GGG 0.639974 8_4:+54286484 Msa1334000:CDS
ATCAATGGGAGCTAAGAGAG+AGG 0.650706 8_4:+54285901 Msa1334000:CDS
TACAGGTTATACTCATGATG+AGG 0.654471 8_4:+54288207 Msa1334000:intron
ATTCGAGCCTAGTAGCCCCA+TGG 0.664825 8_4:+54284957 Msa1334000:CDS
TGCAGCAATGTCCATTGCAG+GGG 0.667723 8_4:+54285757 Msa1334000:CDS
AGGCACTTTCAAGCTAGACA+TGG 0.677280 8_4:+54288441 Msa1334000:CDS
GTATAAAGGTTCAGAAACCG+AGG 0.678370 8_4:+54288381 Msa1334000:CDS
AGATCATTAGACTTCAATGG+AGG 0.678880 8_4:-54285157 None:intergenic
ACAGGGTGCTGAGTTATATG+TGG 0.679997 8_4:+54286501 Msa1334000:CDS
TTATATGTGGAATCACCAGA+AGG 0.687221 8_4:+54286514 Msa1334000:CDS
GTCTTCAATAGGCAAGATGG+GGG 0.690345 8_4:-54286431 None:intergenic
TCTTCGTCGTTACAAGACAT+GGG 0.693504 8_4:+54288471 Msa1334000:CDS
TCAAGGAACAGATTGAATGG+GGG 0.721493 8_4:+54286406 Msa1334000:CDS
TCACCGTAGGAAGAGCCATG+GGG 0.748512 8_4:-54284972 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAGTTTATTTTCTAT+TGG - chr8_4:54286229-54286248 None:intergenic 10.0%
!! TTAAATTGGTATTTAAAAAA+TGG - chr8_4:54287182-54287201 None:intergenic 10.0%
!! CATAAATAATTAAAAGAAAA+GGG - chr8_4:54288283-54288302 None:intergenic 10.0%
!! TCATAAATAATTAAAAGAAA+AGG - chr8_4:54288284-54288303 None:intergenic 10.0%
!! TAGAAAAACATATAATACAT+AGG - chr8_4:54286824-54286843 None:intergenic 15.0%
!!! TTAATTCTTTATGGTATTTT+TGG - chr8_4:54287001-54287020 None:intergenic 15.0%
!!! GTTTTAAACTGAATTTAAAT+TGG - chr8_4:54287196-54287215 None:intergenic 15.0%
!! TGCTATTGTAATTTAATTCA+GGG - chr8_4:54285501-54285520 None:intergenic 20.0%
!! TAAATTACAATAGCAGTTTA+CGG + chr8_4:54285506-54285525 Msa1334000:CDS 20.0%
!! ATCTATATGATATGATATGA+TGG - chr8_4:54285629-54285648 None:intergenic 20.0%
!! AAAGTATGTCAATAAAGAAA+TGG + chr8_4:54285675-54285694 Msa1334000:CDS 20.0%
!! TTTAGTGTAATTATATGTGT+CGG + chr8_4:54286102-54286121 Msa1334000:intron 20.0%
!!! AAAAGTTTATTTTCTATTGG+TGG - chr8_4:54286226-54286245 None:intergenic 20.0%
!! AAGTTAAGAATTATGACATT+TGG - chr8_4:54286571-54286590 None:intergenic 20.0%
!! CTATATATGGTTATACTAAT+TGG - chr8_4:54286649-54286668 None:intergenic 20.0%
!! TAACTTAAAAGTCATACAAA+TGG - chr8_4:54286738-54286757 None:intergenic 20.0%
!!! GTTTTTTCTGGAAATTTAAA+CGG - chr8_4:54287381-54287400 None:intergenic 20.0%
!! TAAAACCCAAATTATGAAAA+GGG - chr8_4:54287809-54287828 None:intergenic 20.0%
!! TTAAAACCCAAATTATGAAA+AGG - chr8_4:54287810-54287829 None:intergenic 20.0%
!!! TTTCATAATTTGGGTTTTAA+TGG + chr8_4:54287810-54287829 Msa1334000:intron 20.0%
!!! ATTTTTTGTTTCTTACTTCA+CGG + chr8_4:54287866-54287885 Msa1334000:intron 20.0%
!! AAATCAATTCAAGAAAAATC+TGG + chr8_4:54287895-54287914 Msa1334000:intron 20.0%
!!! TTAACCAGTTTTTTTTAAAG+TGG + chr8_4:54288056-54288075 Msa1334000:intron 20.0%
!!! AAAACCACTTTAAAAAAAAC+TGG - chr8_4:54288063-54288082 None:intergenic 20.0%
!! AAATTTAATTACACCAGTTA+GGG - chr8_4:54288147-54288166 None:intergenic 20.0%
!! AAAATTTAATTACACCAGTT+AGG - chr8_4:54288148-54288167 None:intergenic 20.0%
!!! ATTTTAATTTTTCTGACCTA+TGG + chr8_4:54288163-54288182 Msa1334000:intron 20.0%
! AATATTGATCAAAAGTGAGT+AGG - chr8_4:54285075-54285094 None:intergenic 25.0%
! TTAAGATCATTAGACTTCAA+TGG - chr8_4:54285163-54285182 None:intergenic 25.0%
! ATTGAAGTCTAATGATCTTA+AGG + chr8_4:54285162-54285181 Msa1334000:CDS 25.0%
! CTGCTATTGTAATTTAATTC+AGG - chr8_4:54285502-54285521 None:intergenic 25.0%
!! ATATTTTTCACTCAGTTTCA+TGG + chr8_4:54285545-54285564 Msa1334000:intron 25.0%
!! TTTATTGACATACTTTTCAG+TGG - chr8_4:54285671-54285690 None:intergenic 25.0%
! GTCAATAAAGAAATGGTTTA+AGG + chr8_4:54285682-54285701 Msa1334000:CDS 25.0%
! TCCATAATAGATGAAATGAA+TGG + chr8_4:54286281-54286300 Msa1334000:intron 25.0%
! TCCATTCATTTCATCTATTA+TGG - chr8_4:54286285-54286304 None:intergenic 25.0%
! CTGTTACTGAAAAAAATTGT+TGG + chr8_4:54286335-54286354 Msa1334000:intron 25.0%
!!! TTGGATTTTGACTTTGAAAA+AGG + chr8_4:54286463-54286482 Msa1334000:CDS 25.0%
! ATATGGTTATACTAATTGGA+TGG - chr8_4:54286645-54286664 None:intergenic 25.0%
! CTTAATAATTCTCCTTCTTT+AGG - chr8_4:54286672-54286691 None:intergenic 25.0%
!! GAAAGTCAAACTTTTGTAAT+AGG + chr8_4:54286766-54286785 Msa1334000:intron 25.0%
! ACTTCAATTATGTCTTAACA+GGG + chr8_4:54286854-54286873 Msa1334000:intron 25.0%
! TAAGTGGTTCAGATAAAATA+TGG - chr8_4:54287141-54287160 None:intergenic 25.0%
! CAGTTCAAAACTTTATTAAG+TGG - chr8_4:54287157-54287176 None:intergenic 25.0%
! AAAACCCAAATTATGAAAAG+GGG - chr8_4:54287808-54287827 None:intergenic 25.0%
!! AGAAAAATCTGGTTCAAAAT+CGG + chr8_4:54287906-54287925 Msa1334000:intron 25.0%
! TCGGTTAAAAATAAGTAAAC+CGG + chr8_4:54287925-54287944 Msa1334000:intron 25.0%
! CTGAATTGTATCCATTAATA+TGG + chr8_4:54288088-54288107 Msa1334000:intron 25.0%
! AATTTAATTACACCAGTTAG+GGG - chr8_4:54288146-54288165 None:intergenic 25.0%
!! GTAGTGGTTGTTATTATTAT+AGG + chr8_4:54288331-54288350 Msa1334000:intron 25.0%
!! TACATGTTATCTGATTGTTT+TGG + chr8_4:54288408-54288427 Msa1334000:CDS 25.0%
!! TATGAAAAAGAGTGCTAGAA+TGG + chr8_4:54285111-54285130 Msa1334000:intron 30.0%
TGTCATAGAACTGAATTAGA+TGG - chr8_4:54285208-54285227 None:intergenic 30.0%
GACATACTAAACACAAAACA+CGG + chr8_4:54285224-54285243 Msa1334000:intron 30.0%
TGACGCATGAAAATAATTTG+TGG + chr8_4:54285263-54285282 Msa1334000:intron 30.0%
!!! ATGTTCTGTTTTTTCAGTCA+TGG + chr8_4:54285452-54285471 Msa1334000:intron 30.0%
!!! TGTTTTTTCAGTCATGGATA+TGG + chr8_4:54285458-54285477 Msa1334000:intron 30.0%
ATAGCAGTTTACGGAAAAAA+TGG + chr8_4:54285515-54285534 Msa1334000:CDS 30.0%
TAGCAGTTTACGGAAAAAAT+GGG + chr8_4:54285516-54285535 Msa1334000:CDS 30.0%
ATCATATCATATAGATGCCA+TGG + chr8_4:54285633-54285652 Msa1334000:intron 30.0%
TAATTACACTAAATCGTGTC+CGG - chr8_4:54286095-54286114 None:intergenic 30.0%
GATAATACCCAAAACTATGA+AGG - chr8_4:54286158-54286177 None:intergenic 30.0%
!! GTTTATTTTCTATTGGTGGA+GGG - chr8_4:54286222-54286241 None:intergenic 30.0%
!! AGTTTATTTTCTATTGGTGG+AGG - chr8_4:54286223-54286242 None:intergenic 30.0%
AACAGATTGTACATAGAGTA+CGG - chr8_4:54286320-54286339 None:intergenic 30.0%
TTAAAGTAAGATCAGGATCA+AGG + chr8_4:54286389-54286408 Msa1334000:CDS 30.0%
AAATCGTAGTTGTCTTCAAT+AGG - chr8_4:54286445-54286464 None:intergenic 30.0%
TATTGAAGACAACTACGATT+TGG + chr8_4:54286444-54286463 Msa1334000:CDS 30.0%
AACCATATATAGCCTAAAGA+AGG + chr8_4:54286657-54286676 Msa1334000:intron 30.0%
GACTTCAATTATGTCTTAAC+AGG + chr8_4:54286853-54286872 Msa1334000:intron 30.0%
! CTACTTTGATTTAGGTGAAT+AGG + chr8_4:54286955-54286974 Msa1334000:intron 30.0%
ACGCTGTCTTTAATTCTTTA+TGG - chr8_4:54287010-54287029 None:intergenic 30.0%
ATACAGTTCAGTTAGTAGTT+TGG - chr8_4:54287113-54287132 None:intergenic 30.0%
!!! GTTTAAAACCAGTTTTGAAC+CGG + chr8_4:54287207-54287226 Msa1334000:intron 30.0%
AACGGTTCATAAACTTAAAC+CGG - chr8_4:54287229-54287248 None:intergenic 30.0%
!! TTTTCTGGAAATTTAAACGG+AGG - chr8_4:54287378-54287397 None:intergenic 30.0%
!!! CTGATGGTTATTGTTTTTTC+TGG - chr8_4:54287393-54287412 None:intergenic 30.0%
GTTGTTAGGTTTATGGTTAT+TGG - chr8_4:54287496-54287515 None:intergenic 30.0%
!! TTGTTGTTGATGATAGAATC+TGG - chr8_4:54287551-54287570 None:intergenic 30.0%
TAAATTATGCTTGTGATTGC+AGG - chr8_4:54287643-54287662 None:intergenic 30.0%
AATTACACAGAATTGCACAT+AGG + chr8_4:54287677-54287696 Msa1334000:intron 30.0%
TATGTATGGATAATGAGAGA+AGG - chr8_4:54287738-54287757 None:intergenic 30.0%
GTTGAAGGAGAAAATATGTA+TGG - chr8_4:54287752-54287771 None:intergenic 30.0%
! TTTTCCCCCTTTTCATAATT+TGG + chr8_4:54287800-54287819 Msa1334000:intron 30.0%
! TTTCCCCCTTTTCATAATTT+GGG + chr8_4:54287801-54287820 Msa1334000:intron 30.0%
AAACCCAAATTATGAAAAGG+GGG - chr8_4:54287807-54287826 None:intergenic 30.0%
! ACCGGTTTAAAACTATAAAC+CGG + chr8_4:54287943-54287962 Msa1334000:intron 30.0%
!!! ACCGGTTTATAGTTTTAAAC+CGG - chr8_4:54287947-54287966 None:intergenic 30.0%
!!! CCGGTTTATTTATTTTGAAC+CGG - chr8_4:54287976-54287995 None:intergenic 30.0%
CCGGTTCAAAATAAATAAAC+CGG + chr8_4:54287973-54287992 Msa1334000:intron 30.0%
! TTTTCAAACCAGTTCCAATT+CGG - chr8_4:54288035-54288054 None:intergenic 30.0%
TTGGAACTGAACCATATTAA+TGG - chr8_4:54288102-54288121 None:intergenic 30.0%
ATGATCTTTACTCAAACTAC+AGG + chr8_4:54288190-54288209 Msa1334000:intron 30.0%
TAATCTGCTAAAAAGCAAGA+AGG + chr8_4:54288235-54288254 Msa1334000:CDS 30.0%
TAGAATGCACGAATAACTTA+TGG + chr8_4:54288309-54288328 Msa1334000:intron 30.0%
!!! ATTGTTTTGGCAACAAGAAA+AGG + chr8_4:54288421-54288440 Msa1334000:CDS 30.0%
AATCTTGAGCATATGATTGA+TGG - chr8_4:54288503-54288522 None:intergenic 30.0%
TGAAGGGGATAGATTAAACT+CGG - chr8_4:54284818-54284837 None:intergenic 35.0%
TAGGCTCGAATTGTTTGATA+GGG - chr8_4:54284948-54284967 None:intergenic 35.0%
TTGATCAAAAGTGAGTAGGT+TGG - chr8_4:54285071-54285090 None:intergenic 35.0%
AGATCATTAGACTTCAATGG+AGG - chr8_4:54285160-54285179 None:intergenic 35.0%
TTTGTGTGTCTGATAAGTGA+CGG - chr8_4:54285349-54285368 None:intergenic 35.0%
TGCAAAAGTAGCTGAATCAA+TGG + chr8_4:54285886-54285905 Msa1334000:CDS 35.0%
GCAAAAGTAGCTGAATCAAT+GGG + chr8_4:54285887-54285906 Msa1334000:CDS 35.0%
!! GAGGATCTTAGAAGTGTTAT+TGG + chr8_4:54285920-54285939 Msa1334000:CDS 35.0%
AGTGTAATTATATGTGTCGG+CGG + chr8_4:54286105-54286124 Msa1334000:intron 35.0%
ATACCCAAAACTATGAAGGA+CGG - chr8_4:54286154-54286173 None:intergenic 35.0%
TGGCTAACTGTAGCATTAAA+AGG + chr8_4:54286355-54286374 Msa1334000:intron 35.0%
TCCTGATCTTACTTTAAGTG+TGG - chr8_4:54286386-54286405 None:intergenic 35.0%
GATCAAGGAACAGATTGAAT+GGG + chr8_4:54286404-54286423 Msa1334000:CDS 35.0%
ATCAAGGAACAGATTGAATG+GGG + chr8_4:54286405-54286424 Msa1334000:CDS 35.0%
TTGTCTTCAATAGGCAAGAT+GGG - chr8_4:54286436-54286455 None:intergenic 35.0%
TTATATGTGGAATCACCAGA+AGG + chr8_4:54286514-54286533 Msa1334000:CDS 35.0%
!! ATTGCATTGAAAGTACCTTC+TGG - chr8_4:54286532-54286551 None:intergenic 35.0%
! GAATTATGACATTTGGAGCA+GGG - chr8_4:54286564-54286583 None:intergenic 35.0%
! AGAATTATGACATTTGGAGC+AGG - chr8_4:54286565-54286584 None:intergenic 35.0%
! ATACTAATTGGATGGTAGTG+TGG - chr8_4:54286637-54286656 None:intergenic 35.0%
CTCCTTCTTTAGGCTATATA+TGG - chr8_4:54286662-54286681 None:intergenic 35.0%
AGGATTATAGACACTGTTCT+TGG - chr8_4:54286889-54286908 None:intergenic 35.0%
TGAAGCTAAGGTTAGGATTA+TGG + chr8_4:54286915-54286934 Msa1334000:intron 35.0%
! GTGTCTGTCTACTTTGATTT+AGG + chr8_4:54286947-54286966 Msa1334000:intron 35.0%
ATGATTACATCTTGCTTCAC+TGG + chr8_4:54287053-54287072 Msa1334000:intron 35.0%
! AGTAGTTTGGTTCAGTTAAC+TGG - chr8_4:54287100-54287119 None:intergenic 35.0%
! AACTTAAACCGGTTCAAAAC+TGG - chr8_4:54287218-54287237 None:intergenic 35.0%
TTGAGTGGTGAATATGGAAA+GGG - chr8_4:54287261-54287280 None:intergenic 35.0%
TTACAGTTGAGTGGTGAATA+TGG - chr8_4:54287267-54287286 None:intergenic 35.0%
! ATGGGTTGTTGTTAGGTTTA+TGG - chr8_4:54287503-54287522 None:intergenic 35.0%
GATAAAGAGATGAAGGTGAA+GGG - chr8_4:54287529-54287548 None:intergenic 35.0%
GAATCTGGATAAAGAGATGA+AGG - chr8_4:54287536-54287555 None:intergenic 35.0%
CAACAACAACAAAACGAAGA+AGG + chr8_4:54287568-54287587 Msa1334000:intron 35.0%
!! TTCATGGTTCTAAACTGCAT+TGG - chr8_4:54288121-54288140 None:intergenic 35.0%
AGTAAAGATCATTGCTCCAT+AGG - chr8_4:54288182-54288201 None:intergenic 35.0%
TACAGGTTATACTCATGATG+AGG + chr8_4:54288207-54288226 Msa1334000:intron 35.0%
CAGATAACATGTATCATCCT+CGG - chr8_4:54288401-54288420 None:intergenic 35.0%
AGCAAGTGAAAGGAAATCCA+TGG - chr8_4:54284857-54284876 None:intergenic 40.0%
TGGATTTCCTTTCACTTGCT+TGG + chr8_4:54284857-54284876 Msa1334000:CDS 40.0%
AGTTACACCAAGCAAGTGAA+AGG - chr8_4:54284867-54284886 None:intergenic 40.0%
! TTGGTGTAACTTTGCTGTAC+AGG + chr8_4:54284876-54284895 Msa1334000:CDS 40.0%
AGAACAAGTGATCCATGTTG+TGG - chr8_4:54284916-54284935 None:intergenic 40.0%
CTAGGCTCGAATTGTTTGAT+AGG - chr8_4:54284949-54284968 None:intergenic 40.0%
TTTGAACTTAGACTCACCGT+AGG - chr8_4:54284988-54285007 None:intergenic 40.0%
GAATGGATGATGCAGATTTC+AGG + chr8_4:54285128-54285147 Msa1334000:CDS 40.0%
TAAACACAAAACACGGACAC+TGG + chr8_4:54285231-54285250 Msa1334000:intron 40.0%
AGTGGTAATATCTGCTTCCA+TGG - chr8_4:54285653-54285672 None:intergenic 40.0%
ACATAGATTGCAAAGAGCAG+AGG + chr8_4:54285730-54285749 Msa1334000:CDS 40.0%
! GTGTAATTATATGTGTCGGC+GGG + chr8_4:54286106-54286125 Msa1334000:intron 40.0%
! TGTCCGTCCTTCATAGTTTT+GGG + chr8_4:54286148-54286167 Msa1334000:intron 40.0%
GCCACACTTAAAGTAAGATC+AGG + chr8_4:54286382-54286401 Msa1334000:CDS 40.0%
GGATCAAGGAACAGATTGAA+TGG + chr8_4:54286403-54286422 Msa1334000:CDS 40.0%
TCAAGGAACAGATTGAATGG+GGG + chr8_4:54286406-54286425 Msa1334000:CDS 40.0%
TGTCTTCAATAGGCAAGATG+GGG - chr8_4:54286435-54286454 None:intergenic 40.0%
GTTGTCTTCAATAGGCAAGA+TGG - chr8_4:54286437-54286456 None:intergenic 40.0%
! AGGAAGATTGATTCTTGCAC+AGG + chr8_4:54286483-54286502 Msa1334000:CDS 40.0%
! GGAAGATTGATTCTTGCACA+GGG + chr8_4:54286484-54286503 Msa1334000:CDS 40.0%
AATCCTCAACAGTGAAGCTA+AGG + chr8_4:54286903-54286922 Msa1334000:CDS 40.0%
TAACCTTAGCTTCACTGTTG+AGG - chr8_4:54286909-54286928 None:intergenic 40.0%
TCAACAGTGAAGCTAAGGTT+AGG + chr8_4:54286908-54286927 Msa1334000:intron 40.0%
! ATCTTGCTTCACTGGTGTTA+GGG + chr8_4:54287061-54287080 Msa1334000:intron 40.0%
TGGAAAGGGAAAGGGAAAAA+CGG - chr8_4:54287247-54287266 None:intergenic 40.0%
GGTGAATATGGAAAGGGAAA+GGG - chr8_4:54287255-54287274 None:intergenic 40.0%
TGGTGAATATGGAAAGGGAA+AGG - chr8_4:54287256-54287275 None:intergenic 40.0%
GTTGAGTGGTGAATATGGAA+AGG - chr8_4:54287262-54287281 None:intergenic 40.0%
TGGTTGAAGTTACAGTTGAG+TGG - chr8_4:54287276-54287295 None:intergenic 40.0%
TCTGGAAATTTAAACGGAGG+TGG - chr8_4:54287375-54287394 None:intergenic 40.0%
! TGGATTGGAGAGAGTGAAAA+CGG - chr8_4:54287427-54287446 None:intergenic 40.0%
AGGAGAGAAAGTGATTGGAT+TGG - chr8_4:54287442-54287461 None:intergenic 40.0%
GGATAAAGAGATGAAGGTGA+AGG - chr8_4:54287530-54287549 None:intergenic 40.0%
AAACGAAGAAGGTGAAGCTA+TGG + chr8_4:54287579-54287598 Msa1334000:intron 40.0%
GAGATTGGAAGAAAGGTTGA+AGG - chr8_4:54287767-54287786 None:intergenic 40.0%
TCAACCTTTCTTCCAATCTC+AGG + chr8_4:54287767-54287786 Msa1334000:intron 40.0%
AATGAGTACAGACCTGAGAT+TGG - chr8_4:54287782-54287801 None:intergenic 40.0%
! ACCGGTTCAAAACTGTAAAC+CGG + chr8_4:54287991-54288010 Msa1334000:intron 40.0%
!!! ACCGGTTTACAGTTTTGAAC+CGG - chr8_4:54287995-54288014 None:intergenic 40.0%
! GTTCCAATTCGGTTTAGAAC+CGG - chr8_4:54288024-54288043 None:intergenic 40.0%
! GTTCTAAACCGAATTGGAAC+TGG + chr8_4:54288024-54288043 Msa1334000:intron 40.0%
GCACGAATAACTTATGGTAG+TGG + chr8_4:54288315-54288334 Msa1334000:intron 40.0%
ATGCATGCAGAGCTGTATAA+AGG + chr8_4:54288367-54288386 Msa1334000:CDS 40.0%
GTATAAAGGTTCAGAAACCG+AGG + chr8_4:54288381-54288400 Msa1334000:CDS 40.0%
ATCTTCGTCGTTACAAGACA+TGG + chr8_4:54288470-54288489 Msa1334000:CDS 40.0%
TCTTCGTCGTTACAAGACAT+GGG + chr8_4:54288471-54288490 Msa1334000:CDS 40.0%
! GAGCATATGATTGATGGTTG+TGG - chr8_4:54288497-54288516 None:intergenic 40.0%
ACTCAGGATGTGCATCTGAA+GGG - chr8_4:54284834-54284853 None:intergenic 45.0%
GAAAGGAAATCCATGGACTC+AGG - chr8_4:54284850-54284869 None:intergenic 45.0%
ATGCAGCAATGTCCATTGCA+GGG + chr8_4:54285756-54285775 Msa1334000:CDS 45.0%
ATCAATGGGAGCTAAGAGAG+AGG + chr8_4:54285901-54285920 Msa1334000:CDS 45.0%
!! GTTATTGGCTCAGCCATGAA+TGG + chr8_4:54285935-54285954 Msa1334000:CDS 45.0%
! ACTAGCACTTGTGCCATTCA+TGG - chr8_4:54285951-54285970 None:intergenic 45.0%
GGGACTATGAAGCACGAATA+CGG + chr8_4:54286060-54286079 Msa1334000:intron 45.0%
GGACTATGAAGCACGAATAC+GGG + chr8_4:54286061-54286080 Msa1334000:intron 45.0%
TATGAAGGACGGACACTCAT+TGG - chr8_4:54286143-54286162 None:intergenic 45.0%
! GTGTCCGTCCTTCATAGTTT+TGG + chr8_4:54286147-54286166 Msa1334000:intron 45.0%
GTCTTCAATAGGCAAGATGG+GGG - chr8_4:54286434-54286453 None:intergenic 45.0%
!! ACAGGGTGCTGAGTTATATG+TGG + chr8_4:54286501-54286520 Msa1334000:CDS 45.0%
CATCTTGCTTCACTGGTGTT+AGG + chr8_4:54287060-54287079 Msa1334000:intron 45.0%
! TCTTGCTTCACTGGTGTTAG+GGG + chr8_4:54287062-54287081 Msa1334000:intron 45.0%
TTAAACGGAGGTGGTAAGTG+TGG - chr8_4:54287366-54287385 None:intergenic 45.0%
ATTGGAGAGAGTGAAAACGG+CGG - chr8_4:54287424-54287443 None:intergenic 45.0%
GAGGAAGGAGAGAAAGTGAT+TGG - chr8_4:54287447-54287466 None:intergenic 45.0%
!! GTTTTTGAAAGCGCGACAGA+GGG - chr8_4:54287474-54287493 None:intergenic 45.0%
!! AGGGAGAATGGGTTGTTGTT+AGG - chr8_4:54287510-54287529 None:intergenic 45.0%
GATGAAGGTGAAGGGAGAAT+GGG - chr8_4:54287521-54287540 None:intergenic 45.0%
AGATGAAGGTGAAGGGAGAA+TGG - chr8_4:54287522-54287541 None:intergenic 45.0%
CAGACCTGAGATTGGAAGAA+AGG - chr8_4:54287774-54287793 None:intergenic 45.0%
!! ACTATAAACCGGTTCGACAC+CGG + chr8_4:54287954-54287973 Msa1334000:intron 45.0%
!! ATTTTGAACCGGTGTCGAAC+CGG - chr8_4:54287965-54287984 None:intergenic 45.0%
!! ACTGTAAACCGGTTCTGAAC+CGG + chr8_4:54288002-54288021 Msa1334000:intron 45.0%
! GTTTAGAACCGGTTCAGAAC+CGG - chr8_4:54288013-54288032 None:intergenic 45.0%
!! GAACCGGTTCTAAACCGAAT+TGG + chr8_4:54288018-54288037 Msa1334000:intron 45.0%
AGGCACTTTCAAGCTAGACA+TGG + chr8_4:54288441-54288460 Msa1334000:CDS 45.0%
CACTTTCAAGCTAGACATGG+TGG + chr8_4:54288444-54288463 Msa1334000:CDS 45.0%
!!! TTTAATTAATACAATTATTT+TGG + chr8_4:54286039-54286058 Msa1334000:intron 5.0%
!!! TTAATTAATACAATTATTTT+GGG + chr8_4:54286040-54286059 Msa1334000:intron 5.0%
!!! ATTGAATTTTAAAAAATAAT+TGG - chr8_4:54286253-54286272 None:intergenic 5.0%
!!! TATTTTTTAAAATTCAATAT+TGG + chr8_4:54286255-54286274 Msa1334000:intron 5.0%
CTCAGGATGTGCATCTGAAG+GGG - chr8_4:54284833-54284852 None:intergenic 50.0%
GACTCAGGATGTGCATCTGA+AGG - chr8_4:54284835-54284854 None:intergenic 50.0%
AGATGCACATCCTGAGTCCA+TGG + chr8_4:54284837-54284856 Msa1334000:CDS 50.0%
GTGATCCATGTTGTGGCTCA+GGG - chr8_4:54284909-54284928 None:intergenic 50.0%
AGTGATCCATGTTGTGGCTC+AGG - chr8_4:54284910-54284929 None:intergenic 50.0%
CATGCAGCAATGTCCATTGC+AGG + chr8_4:54285755-54285774 Msa1334000:CDS 50.0%
TGCAGCAATGTCCATTGCAG+GGG + chr8_4:54285757-54285776 Msa1334000:CDS 50.0%
! AATAGCCTCTGCTGCTGCTT+TGG + chr8_4:54285850-54285869 Msa1334000:CDS 50.0%
CGGCGATCAGTTTGGTTAGT+TGG - chr8_4:54287296-54287315 None:intergenic 50.0%
TGAGTGATCGGCGATCAGTT+TGG - chr8_4:54287304-54287323 None:intergenic 50.0%
AACGGCGGCTTCAAATCTGA+TGG - chr8_4:54287409-54287428 None:intergenic 50.0%
!! GGTTTTTGAAAGCGCGACAG+AGG - chr8_4:54287475-54287494 None:intergenic 50.0%
CGAAGAAGGTGAAGCTATGG+TGG + chr8_4:54287582-54287601 Msa1334000:intron 50.0%
GAACCATGAACACCCCTAAC+TGG + chr8_4:54288131-54288150 Msa1334000:intron 50.0%
!! ACACCAGTTAGGGGTGTTCA+TGG - chr8_4:54288137-54288156 None:intergenic 50.0%
CTGAACCCTGAGCCACAACA+TGG + chr8_4:54284901-54284920 Msa1334000:CDS 55.0%
ATTCGAGCCTAGTAGCCCCA+TGG + chr8_4:54284957-54284976 Msa1334000:CDS 55.0%
TAGCCCCATGGCTCTTCCTA+CGG + chr8_4:54284969-54284988 Msa1334000:CDS 55.0%
TCACCGTAGGAAGAGCCATG+GGG - chr8_4:54284975-54284994 None:intergenic 55.0%
CTCACCGTAGGAAGAGCCAT+GGG - chr8_4:54284976-54284995 None:intergenic 55.0%
ACTCACCGTAGGAAGAGCCA+TGG - chr8_4:54284977-54284996 None:intergenic 55.0%
AGCTACCAAAGCAGCAGCAG+AGG - chr8_4:54285858-54285877 None:intergenic 55.0%
CAGCTGCAGCAGTGAGAGTT+AGG - chr8_4:54285979-54285998 None:intergenic 55.0%
ACGAATACGGGCATAGACGC+CGG + chr8_4:54286073-54286092 Msa1334000:intron 55.0%
!! GGTAAGTGTGGTGCTGATGG+CGG - chr8_4:54287354-54287373 None:intergenic 55.0%
! GGTGGTAAGTGTGGTGCTGA+TGG - chr8_4:54287357-54287376 None:intergenic 55.0%
GGAAGAGCCATGGGGCTACT+AGG - chr8_4:54284967-54284986 None:intergenic 60.0%
TGCTGCTGCAACCCCTGCAA+TGG - chr8_4:54285771-54285790 None:intergenic 60.0%
CGGGAGGAGGAGTGAGTGAT+CGG - chr8_4:54287316-54287335 None:intergenic 60.0%
ACTCACTCCTCCTCCCGCAA+TGG + chr8_4:54287319-54287338 Msa1334000:intron 60.0%
!! AAGTGTGGTGCTGATGGCGG+CGG - chr8_4:54287351-54287370 None:intergenic 60.0%
GCGACAGAGGGATCAGAGGA+AGG - chr8_4:54287462-54287481 None:intergenic 60.0%
AAGCGCGACAGAGGGATCAG+AGG - chr8_4:54287466-54287485 None:intergenic 60.0%
GAGGTCACCATTGCGGGAGG+AGG - chr8_4:54287329-54287348 None:intergenic 65.0%
GCGGAGGTCACCATTGCGGG+AGG - chr8_4:54287332-54287351 None:intergenic 70.0%
GCGGCGGAGGTCACCATTGC+GGG - chr8_4:54287335-54287354 None:intergenic 70.0%
GGCGGCGGAGGTCACCATTG+CGG - chr8_4:54287336-54287355 None:intergenic 70.0%
!! TGTGGTGCTGATGGCGGCGG+AGG - chr8_4:54287348-54287367 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 54284808 54288561 54284808 ID=Msa1334000;Name=Msa1334000
chr8_4 mRNA 54284808 54288561 54284808 ID=Msa1334000-mRNA-1;Parent=Msa1334000;Name=Msa1334000-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|8|0|382
chr8_4 exon 54284808 54284990 54284808 ID=Msa1334000-mRNA-1:exon:16828;Parent=Msa1334000-mRNA-1
chr8_4 exon 54285121 54285183 54285121 ID=Msa1334000-mRNA-1:exon:16829;Parent=Msa1334000-mRNA-1
chr8_4 exon 54285469 54285537 54285469 ID=Msa1334000-mRNA-1:exon:16830;Parent=Msa1334000-mRNA-1
chr8_4 exon 54285647 54286004 54285647 ID=Msa1334000-mRNA-1:exon:16831;Parent=Msa1334000-mRNA-1
chr8_4 exon 54286368 54286535 54286368 ID=Msa1334000-mRNA-1:exon:16832;Parent=Msa1334000-mRNA-1
chr8_4 exon 54286875 54286924 54286875 ID=Msa1334000-mRNA-1:exon:16833;Parent=Msa1334000-mRNA-1
chr8_4 exon 54288212 54288260 54288212 ID=Msa1334000-mRNA-1:exon:16834;Parent=Msa1334000-mRNA-1
chr8_4 exon 54288353 54288561 54288353 ID=Msa1334000-mRNA-1:exon:16835;Parent=Msa1334000-mRNA-1
chr8_4 CDS 54284808 54284990 54284808 ID=Msa1334000-mRNA-1:cds;Parent=Msa1334000-mRNA-1
chr8_4 CDS 54285121 54285183 54285121 ID=Msa1334000-mRNA-1:cds;Parent=Msa1334000-mRNA-1
chr8_4 CDS 54285469 54285537 54285469 ID=Msa1334000-mRNA-1:cds;Parent=Msa1334000-mRNA-1
chr8_4 CDS 54285647 54286004 54285647 ID=Msa1334000-mRNA-1:cds;Parent=Msa1334000-mRNA-1
chr8_4 CDS 54286368 54286535 54286368 ID=Msa1334000-mRNA-1:cds;Parent=Msa1334000-mRNA-1
chr8_4 CDS 54286875 54286924 54286875 ID=Msa1334000-mRNA-1:cds;Parent=Msa1334000-mRNA-1
chr8_4 CDS 54288212 54288260 54288212 ID=Msa1334000-mRNA-1:cds;Parent=Msa1334000-mRNA-1
chr8_4 CDS 54288353 54288561 54288353 ID=Msa1334000-mRNA-1:cds;Parent=Msa1334000-mRNA-1
Gene Sequence

>Msa1334000

ATGGCTTCCGAGTTTAATCTATCCCCTTCAGATGCACATCCTGAGTCCATGGATTTCCTTTCACTTGCTTGGTGTAACTTTGCTGTACAGGCTCTGAACCCTGAGCCACAACATGGATCACTTGTTCTACTTGATAGCCCTATCAAACAATTCGAGCCTAGTAGCCCCATGGCTCTTCCTACGAGTGCTAGAATGGATGATGCAGATTTCAGGTCTATACCTCCATTGAAGTCTAATGATCTTAAGTCATGGATATGGATGCAGCAAGCAATGCACCCTGAATTAAATTACAATAGCAGTTTACGGAAAAAATGGATGCCATGGAAGCAGATATTACCACTGAAAAGTATGTCAATAAAGAAATGGTTTAAGGAAATAAAGATGAAGAAGAAAGAAGAACATAGATTGCAAAGAGCAGAGGTGCATGCAGCAATGTCCATTGCAGGGGTTGCAGCAGCACTTGCTGCAATTGCTTCTGAAAATTCAAAAAAAGAGTCAAATGAAGATAGAGAGAAAGCAATAGCCTCTGCTGCTGCTTTGGTAGCTGCTCAGTGTGCAAAAGTAGCTGAATCAATGGGAGCTAAGAGAGAGGATCTTAGAAGTGTTATTGGCTCAGCCATGAATGGCACAAGTGCTAGTGATATCCTAACTCTCACTGCTGCAGCTGCAACATCATTAAAAGGAGCAGCCACACTTAAAGTAAGATCAGGATCAAGGAACAGATTGAATGGGGGAGCCCCCATCTTGCCTATTGAAGACAACTACGATTTGGATTTTGACTTTGAAAAAGGAAGATTGATTCTTGCACAGGGTGCTGAGTTATATGTGGAATCACCAGAAGGGAAGTACATGCCAAGAACAGTGTCTATAATCCTCAACAGTGAAGCTAAGGTTATACTCATGATGAGGAAGCATAATCTGCTAAAAAGCAAGAAGGAGTGTATTGTAATGAATATGCATGCAGAGCTGTATAAAGGTTCAGAAACCGAGGATGATACATGTTATCTGATTGTTTTGGCAACAAGAAAAGGCACTTTCAAGCTAGACATGGTGGATGATCTTCGTCGTTACAAGACATGGGCCACAACCATCAATCATATGCTCAAGATTTCTACTTCTTTTGCAAAATATGAGCTCCAATTTTACTGA

Protein sequence

>Msa1334000

MASEFNLSPSDAHPESMDFLSLAWCNFAVQALNPEPQHGSLVLLDSPIKQFEPSSPMALPTSARMDDADFRSIPPLKSNDLKSWIWMQQAMHPELNYNSSLRKKWMPWKQILPLKSMSIKKWFKEIKMKKKEEHRLQRAEVHAAMSIAGVAAALAAIASENSKKESNEDREKAIASAAALVAAQCAKVAESMGAKREDLRSVIGSAMNGTSASDILTLTAAAATSLKGAATLKVRSGSRNRLNGGAPILPIEDNYDLDFDFEKGRLILAQGAELYVESPEGKYMPRTVSIILNSEAKVILMMRKHNLLKSKKECIVMNMHAELYKGSETEDDTCYLIVLATRKGTFKLDMVDDLRRYKTWATTINHMLKISTSFAKYELQFY*