Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251250 | XP_039686702.1 | 93.370 | 181 | 8 | 1 | 1 | 177 | 1 | 181 | 4.11e-120 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251250 | A0A072VAK5 | 93.370 | 181 | 8 | 1 | 1 | 177 | 1 | 181 | 1.96e-120 | 351 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0251250 | -0.804024 | 2.634362e-49 | -8.615850e-47 |
| Msa0002540 | Msa0251250 | 0.810872 | 9.287319e-51 | -8.615850e-47 |
| Msa0032370 | Msa0251250 | 0.828335 | 9.518749e-55 | -8.615850e-47 |
| Msa0095380 | Msa0251250 | 0.809481 | 1.852763e-50 | -8.615850e-47 |
| Msa0105420 | Msa0251250 | 0.805255 | 1.457820e-49 | -8.615850e-47 |
| Msa0113160 | Msa0251250 | 0.818804 | 1.619265e-52 | -8.615850e-47 |
| Msa0143240 | Msa0251250 | -0.800413 | 1.457941e-48 | -8.615850e-47 |
| Msa0145950 | Msa0251250 | 0.820771 | 5.750054e-53 | -8.615850e-47 |
| Msa0172350 | Msa0251250 | 0.829897 | 3.981070e-55 | -8.615850e-47 |
| Msa0185590 | Msa0251250 | 0.835165 | 1.966659e-56 | -8.615850e-47 |
| Msa0208810 | Msa0251250 | 0.814022 | 1.903392e-51 | -8.615850e-47 |
| Msa0222920 | Msa0251250 | 0.801362 | 9.330505e-49 | -8.615850e-47 |
| Msa0223290 | Msa0251250 | 0.817252 | 3.631725e-52 | -8.615850e-47 |
| Msa0227510 | Msa0251250 | 0.817497 | 3.197511e-52 | -8.615850e-47 |
| Msa0236980 | Msa0251250 | 0.800750 | 1.244717e-48 | -8.615850e-47 |
| Msa0251250 | Msa0267760 | 0.824651 | 7.191472e-54 | -8.615850e-47 |
| Msa0251250 | Msa0275400 | -0.830478 | 2.870896e-55 | -8.615850e-47 |
| Msa0251250 | Msa0302650 | 0.825557 | 4.392340e-54 | -8.615850e-47 |
| Msa0251250 | Msa0315240 | 0.862104 | 6.416265e-64 | -8.615850e-47 |
| Msa0251250 | Msa0328210 | 0.821567 | 3.769105e-53 | -8.615850e-47 |
| Msa0251250 | Msa0344640 | 0.801647 | 8.156371e-49 | -8.615850e-47 |
| Msa0251250 | Msa0368660 | 0.812139 | 4.925858e-51 | -8.615850e-47 |
| Msa0251250 | Msa0377530 | 0.816579 | 5.143121e-52 | -8.615850e-47 |
| Msa0251250 | Msa0393950 | 0.820515 | 6.584722e-53 | -8.615850e-47 |
| Msa0251250 | Msa0414950 | -0.801312 | 9.554383e-49 | -8.615850e-47 |
| Msa0251250 | Msa0415810 | 0.837412 | 5.277216e-57 | -8.615850e-47 |
| Msa0251250 | Msa0420000 | 0.816018 | 6.864103e-52 | -8.615850e-47 |
| Msa0251250 | Msa0423360 | -0.802290 | 6.017250e-49 | -8.615850e-47 |
| Msa0251250 | Msa0460930 | 0.831082 | 2.042056e-55 | -8.615850e-47 |
| Msa0251250 | Msa0465920 | 0.801290 | 9.656813e-49 | -8.615850e-47 |
| Msa0251250 | Msa0469910 | -0.834233 | 3.374763e-56 | -8.615850e-47 |
| Msa0251250 | Msa0480320 | 0.827354 | 1.638274e-54 | -8.615850e-47 |
| Msa0251250 | Msa0484690 | 0.804376 | 2.225134e-49 | -8.615850e-47 |
| Msa0251250 | Msa0490300 | 0.818182 | 2.240411e-52 | -8.615850e-47 |
| Msa0251250 | Msa0506890 | 0.825542 | 4.429471e-54 | -8.615850e-47 |
| Msa0251250 | Msa0506940 | 0.840368 | 9.070947e-58 | -8.615850e-47 |
| Msa0251250 | Msa0517490 | 0.825292 | 5.075337e-54 | -8.615850e-47 |
| Msa0251250 | Msa0520320 | 0.800380 | 1.481045e-48 | -8.615850e-47 |
| Msa0251250 | Msa0521880 | 0.814457 | 1.525572e-51 | -8.615850e-47 |
| Msa0251250 | Msa0526710 | 0.820200 | 7.776296e-53 | -8.615850e-47 |
| Msa0251250 | Msa0526890 | 0.806420 | 8.298388e-50 | -8.615850e-47 |
| Msa0251250 | Msa0535030 | 0.820339 | 7.227881e-53 | -8.615850e-47 |
| Msa0251250 | Msa0535060 | 0.818516 | 1.881675e-52 | -8.615850e-47 |
| Msa0251250 | Msa0542160 | 0.818097 | 2.341362e-52 | -8.615850e-47 |
| Msa0251250 | Msa0576980 | 0.814651 | 1.382287e-51 | -8.615850e-47 |
| Msa0251250 | Msa0591770 | 0.832670 | 8.278103e-56 | -8.615850e-47 |
| Msa0251250 | Msa0602120 | 0.800258 | 1.568205e-48 | -8.615850e-47 |
| Msa0251250 | Msa0619980 | 0.812096 | 5.033917e-51 | -8.615850e-47 |
| Msa0251250 | Msa0643250 | 0.801166 | 1.023573e-48 | -8.615850e-47 |
| Msa0251250 | Msa0669850 | 0.828362 | 9.376946e-55 | -8.615850e-47 |
| Msa0251250 | Msa0677270 | 0.801761 | 7.728638e-49 | -8.615850e-47 |
| Msa0251250 | Msa0706370 | 0.817988 | 2.477928e-52 | -8.615850e-47 |
| Msa0251250 | Msa0715110 | 0.824891 | 6.314122e-54 | -8.615850e-47 |
| Msa0251250 | Msa0743680 | 0.831021 | 2.113738e-55 | -8.615850e-47 |
| Msa0251250 | Msa0754720 | -0.808764 | 2.638017e-50 | -8.615850e-47 |
| Msa0251250 | Msa0784620 | 0.837995 | 3.739654e-57 | -8.615850e-47 |
| Msa0251250 | Msa0798070 | 0.810199 | 1.297664e-50 | -8.615850e-47 |
| Msa0251250 | Msa0824730 | 0.837133 | 6.222272e-57 | -8.615850e-47 |
| Msa0251250 | Msa0840260 | 0.802328 | 5.911143e-49 | -8.615850e-47 |
| Msa0251250 | Msa0863370 | 0.804660 | 1.941350e-49 | -8.615850e-47 |
| Msa0251250 | Msa0863800 | 0.826829 | 2.188403e-54 | -8.615850e-47 |
| Msa0251250 | Msa0866120 | 0.834801 | 2.429282e-56 | -8.615850e-47 |
| Msa0251250 | Msa0908170 | 0.800583 | 1.346561e-48 | -8.615850e-47 |
| Msa0251250 | Msa0922540 | 0.803868 | 2.838612e-49 | -8.615850e-47 |
| Msa0251250 | Msa0933440 | 0.832707 | 8.106744e-56 | -8.615850e-47 |
| Msa0251250 | Msa0959010 | 0.818834 | 1.593827e-52 | -8.615850e-47 |
| Msa0251250 | Msa0993530 | 0.822900 | 1.848992e-53 | -8.615850e-47 |
| Msa0251250 | Msa1000940 | 0.829434 | 5.158311e-55 | -8.615850e-47 |
| Msa0251250 | Msa1015060 | 0.816632 | 5.004724e-52 | -8.615850e-47 |
| Msa0251250 | Msa1018790 | 0.822663 | 2.100057e-53 | -8.615850e-47 |
| Msa0251250 | Msa1033560 | 0.800037 | 1.739434e-48 | -8.615850e-47 |
| Msa0251250 | Msa1083210 | 0.803076 | 4.143387e-49 | -8.615850e-47 |
| Msa0251250 | Msa1092820 | 0.804325 | 2.280394e-49 | -8.615850e-47 |
| Msa0251250 | Msa1130210 | -0.801725 | 7.863631e-49 | -8.615850e-47 |
| Msa0251250 | Msa1193950 | -0.800469 | 1.420341e-48 | -8.615850e-47 |
| Msa0251250 | Msa1221900 | 0.804893 | 1.735774e-49 | -8.615850e-47 |
| Msa0251250 | Msa1237030 | 0.825996 | 3.456977e-54 | -8.615850e-47 |
| Msa0251250 | Msa1249920 | 0.802439 | 5.607209e-49 | -8.615850e-47 |
| Msa0251250 | Msa1265070 | 0.806515 | 7.925083e-50 | -8.615850e-47 |
| Msa0251250 | Msa1314100 | 0.800060 | 1.720521e-48 | -8.615850e-47 |
| Msa0251250 | Msa1327760 | 0.813364 | 2.657004e-51 | -8.615850e-47 |
| Msa0251250 | Msa1337730 | 0.817659 | 2.939889e-52 | -8.615850e-47 |
| Msa0251250 | Msa1360890 | -0.822256 | 2.611280e-53 | -8.615850e-47 |
| Msa0251250 | Msa1362510 | 0.820242 | 7.605214e-53 | -8.615850e-47 |
| Msa0251250 | Msa1365200 | 0.810256 | 1.261443e-50 | -8.615850e-47 |
| Msa0251250 | Msa1373510 | 0.806173 | 9.353954e-50 | -8.615850e-47 |
| Msa0251250 | Msa1374440 | 0.802130 | 6.490899e-49 | -8.615850e-47 |
| Msa0251250 | Msa1379990 | 0.802441 | 5.602635e-49 | -8.615850e-47 |
| Msa0251250 | Msa1390230 | 0.814531 | 1.469648e-51 | -8.615850e-47 |
| Msa0251250 | Msa1390310 | 0.826801 | 2.222089e-54 | -8.615850e-47 |
| Msa0251250 | Msa1390770 | 0.812314 | 4.513270e-51 | -8.615850e-47 |
| Msa0251250 | Msa1403930 | -0.800208 | 1.605008e-48 | -8.615850e-47 |
| Msa0251250 | Msa1422270 | 0.809920 | 1.490738e-50 | -8.615850e-47 |
| Msa0251250 | Msa1442220 | -0.822381 | 2.442400e-53 | -8.615850e-47 |
| Msa0251250 | Msa1456650 | 0.812405 | 4.310128e-51 | -8.615850e-47 |
| Msa0251250 | Msa1466460 | 0.805854 | 1.091916e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251250 | MtrunA17_Chr2g0323831 | 93.370 | 181 | 8 | 1 | 1 | 177 | 1 | 181 | 3.78e-124 | 351 |
| Msa0251250 | MtrunA17_Chr2g0323841 | 47.486 | 179 | 87 | 3 | 3 | 175 | 18 | 195 | 5.54e-48 | 158 |
| Msa0251250 | MtrunA17_Chr2g0323861 | 42.308 | 130 | 70 | 2 | 3 | 127 | 4 | 133 | 3.98e-26 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251250 | AT2G20830.1 | 58.101 | 179 | 67 | 2 | 1 | 175 | 1 | 175 | 1.31e-65 | 203 |
| Msa0251250 | AT2G20830.4 | 58.101 | 179 | 67 | 2 | 1 | 175 | 1 | 175 | 1.31e-65 | 203 |
| Msa0251250 | AT2G20830.5 | 58.101 | 179 | 67 | 2 | 1 | 175 | 6 | 180 | 1.50e-65 | 203 |
| Msa0251250 | AT2G20830.3 | 58.101 | 179 | 67 | 2 | 1 | 175 | 45 | 219 | 4.90e-65 | 203 |
| Msa0251250 | AT2G20830.6 | 58.101 | 179 | 67 | 2 | 1 | 175 | 75 | 249 | 9.10e-65 | 203 |
| Msa0251250 | AT2G20830.2 | 58.101 | 179 | 67 | 2 | 1 | 175 | 135 | 309 | 1.02e-63 | 202 |
Find 33 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAAACTTGTTAATAAT+TGG | 0.184435 | 2_2:-40671217 | None:intergenic |
| GCAGTTCCTACTTTCTTATA+TGG | 0.250836 | 2_2:+40672300 | Msa0251250:intron |
| TTGTTAATAATTGGTGCTAA+TGG | 0.292859 | 2_2:-40671208 | None:intergenic |
| TTACACTCTTGTCTCTGAAT+TGG | 0.333055 | 2_2:+40671261 | Msa0251250:CDS |
| TCCACTGGTTGATGCTTCAT+TGG | 0.336732 | 2_2:+40671426 | Msa0251250:CDS |
| GATTCAATCAGAAGAGCATT+TGG | 0.396772 | 2_2:+40672351 | Msa0251250:CDS |
| AAAATGTTGAAGACAATCCT+AGG | 0.489767 | 2_2:+40671109 | None:intergenic |
| TATTAACAAGTTTGAAGATG+TGG | 0.493411 | 2_2:+40671222 | Msa0251250:CDS |
| TGGACCACTATATGGTTTCA+AGG | 0.496494 | 2_2:-40672436 | None:intergenic |
| TATATACTTTGCAGCAACCT+AGG | 0.518994 | 2_2:-40671126 | None:intergenic |
| GATGTGGCTTATAATAGAGT+TGG | 0.534791 | 2_2:+40671238 | Msa0251250:CDS |
| GACATGGGTTCTAGTTTGCA+AGG | 0.536782 | 2_2:+40671484 | Msa0251250:CDS |
| GACAAATGCTGTGTTGGCTA+TGG | 0.537578 | 2_2:+40671318 | Msa0251250:CDS |
| TCCAGCGAAAACCAGTGGAT+TGG | 0.537819 | 2_2:+40672390 | Msa0251250:CDS |
| TTGCCCTTGAAACCATATAG+TGG | 0.547821 | 2_2:+40672432 | Msa0251250:CDS |
| GCTGCTCCATATAAGAAAGT+AGG | 0.550474 | 2_2:-40672306 | None:intergenic |
| AAGCAGAAACAAGAGTGCAT+TGG | 0.556590 | 2_2:+40671156 | Msa0251250:CDS |
| TGCTGTGTTGGCTATGGTGA+AGG | 0.556737 | 2_2:+40671324 | Msa0251250:CDS |
| CAAACTAGAACCCATGTCAC+TGG | 0.559479 | 2_2:-40671479 | None:intergenic |
| CTTCATTGGATCAAGCAGCT+AGG | 0.561245 | 2_2:+40671440 | Msa0251250:CDS |
| TGATTTGACAAATGCTGTGT+TGG | 0.563038 | 2_2:+40671312 | Msa0251250:CDS |
| TGATCAACAACACCAAGTCT+AGG | 0.575498 | 2_2:-40671391 | None:intergenic |
| TATGGAGCAGCACATGAAGA+GGG | 0.584882 | 2_2:+40672318 | Msa0251250:CDS |
| GGACCACTATATGGTTTCAA+GGG | 0.591212 | 2_2:-40672435 | None:intergenic |
| ATCAAGCAGCTAGGACTGCA+AGG | 0.592212 | 2_2:+40671449 | Msa0251250:CDS |
| AAGGTGTCTAGCCAGTGACA+TGG | 0.601641 | 2_2:+40671468 | Msa0251250:CDS |
| AGTGGAACTCATCCTAGACT+TGG | 0.615236 | 2_2:+40671379 | Msa0251250:CDS |
| ATATGGAGCAGCACATGAAG+AGG | 0.617078 | 2_2:+40672317 | Msa0251250:CDS |
| CAAATTCCAGCGAAAACCAG+TGG | 0.619925 | 2_2:+40672385 | Msa0251250:CDS |
| AGGTGTCTAGCCAGTGACAT+GGG | 0.623375 | 2_2:+40671469 | Msa0251250:CDS |
| GAGCAGCACATGAAGAGGGG+AGG | 0.659231 | 2_2:+40672322 | Msa0251250:CDS |
| ATGGAGCAGCACATGAAGAG+GGG | 0.672932 | 2_2:+40672319 | Msa0251250:CDS |
| TCCAATGAAGCATCAACCAG+TGG | 0.673782 | 2_2:-40671427 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTACATGTTAGTAAA+TGG | + | chr2_2:40671848-40671867 | Msa0251250:intron | 15.0% |
| !! | TTAACATACACTTTAATATT+TGG | - | chr2_2:40672084-40672103 | None:intergenic | 15.0% |
| !! | TATATTTACATGTTAGTAAA+TGG | + | chr2_2:40671848-40671867 | Msa0251250:intron | 15.0% |
| !! | TTAACATACACTTTAATATT+TGG | - | chr2_2:40672084-40672103 | None:intergenic | 15.0% |
| !!! | TCTTCAAACTTGTTAATAAT+TGG | - | chr2_2:40671220-40671239 | None:intergenic | 20.0% |
| !!! | ATTTGATAATGTTGATTTTG+AGG | + | chr2_2:40671351-40671370 | Msa0251250:intron | 20.0% |
| !! | GTTTATCTAATATATGCTAA+AGG | + | chr2_2:40671877-40671896 | Msa0251250:intron | 20.0% |
| !!! | AATTTTAATGTGACATTGAA+GGG | - | chr2_2:40672160-40672179 | None:intergenic | 20.0% |
| !!! | AAATTTTAATGTGACATTGA+AGG | - | chr2_2:40672161-40672180 | None:intergenic | 20.0% |
| !!! | TCTTCAAACTTGTTAATAAT+TGG | - | chr2_2:40671220-40671239 | None:intergenic | 20.0% |
| !!! | ATTTGATAATGTTGATTTTG+AGG | + | chr2_2:40671351-40671370 | Msa0251250:intron | 20.0% |
| !! | GTTTATCTAATATATGCTAA+AGG | + | chr2_2:40671877-40671896 | Msa0251250:intron | 20.0% |
| !!! | AATTTTAATGTGACATTGAA+GGG | - | chr2_2:40672160-40672179 | None:intergenic | 20.0% |
| !!! | AAATTTTAATGTGACATTGA+AGG | - | chr2_2:40672161-40672180 | None:intergenic | 20.0% |
| !!! | TTGTTAATAATTGGTGCTAA+TGG | - | chr2_2:40671211-40671230 | None:intergenic | 25.0% |
| ! | TATTAACAAGTTTGAAGATG+TGG | + | chr2_2:40671222-40671241 | Msa0251250:CDS | 25.0% |
| !!! | AATGTATTGATTCTGCAAAA+TGG | + | chr2_2:40671652-40671671 | Msa0251250:intron | 25.0% |
| !!! | TAAAGGAGAATGTTATTTCT+TGG | + | chr2_2:40671894-40671913 | Msa0251250:intron | 25.0% |
| !!! | AAAGGAGAATGTTATTTCTT+GGG | + | chr2_2:40671895-40671914 | Msa0251250:intron | 25.0% |
| ! | AAATTTGATACCATGCATAT+TGG | + | chr2_2:40672007-40672026 | Msa0251250:intron | 25.0% |
| !!! | TTGTTAATAATTGGTGCTAA+TGG | - | chr2_2:40671211-40671230 | None:intergenic | 25.0% |
| ! | TATTAACAAGTTTGAAGATG+TGG | + | chr2_2:40671222-40671241 | Msa0251250:CDS | 25.0% |
| !!! | AATGTATTGATTCTGCAAAA+TGG | + | chr2_2:40671652-40671671 | Msa0251250:intron | 25.0% |
| !!! | TAAAGGAGAATGTTATTTCT+TGG | + | chr2_2:40671894-40671913 | Msa0251250:intron | 25.0% |
| !!! | AAAGGAGAATGTTATTTCTT+GGG | + | chr2_2:40671895-40671914 | Msa0251250:intron | 25.0% |
| ! | AAATTTGATACCATGCATAT+TGG | + | chr2_2:40672007-40672026 | Msa0251250:intron | 25.0% |
| !! | TCATATTTGTTTTCATCCAC+TGG | + | chr2_2:40671411-40671430 | Msa0251250:CDS | 30.0% |
| ! | AGTTGCATAGCATGATTTTA+AGG | + | chr2_2:40671512-40671531 | Msa0251250:intron | 30.0% |
| ! | GTTGCATAGCATGATTTTAA+GGG | + | chr2_2:40671513-40671532 | Msa0251250:intron | 30.0% |
| AGCATTACTTCTTATGTGTT+TGG | + | chr2_2:40671605-40671624 | Msa0251250:intron | 30.0% | |
| AGGCTAAAAATCAATTGTAG+AGG | + | chr2_2:40671709-40671728 | Msa0251250:intron | 30.0% | |
| TTTCGAAATTGAATCCAACT+CGG | - | chr2_2:40671756-40671775 | None:intergenic | 30.0% | |
| ATTATTCACATAGATGCAAG+CGG | + | chr2_2:40671797-40671816 | Msa0251250:intron | 30.0% | |
| !! | AGAATGTTATTTCTTGGGAA+GGG | + | chr2_2:40671900-40671919 | Msa0251250:intron | 30.0% |
| TCTTCAACATTTAGCACAAA+AGG | + | chr2_2:40672056-40672075 | Msa0251250:intron | 30.0% | |
| CTTCAACATTTAGCACAAAA+GGG | + | chr2_2:40672057-40672076 | Msa0251250:intron | 30.0% | |
| TTCAACATTTAGCACAAAAG+GGG | + | chr2_2:40672058-40672077 | Msa0251250:intron | 30.0% | |
| !! | TCATATTTGTTTTCATCCAC+TGG | + | chr2_2:40671411-40671430 | Msa0251250:CDS | 30.0% |
| ! | AGTTGCATAGCATGATTTTA+AGG | + | chr2_2:40671512-40671531 | Msa0251250:intron | 30.0% |
| ! | GTTGCATAGCATGATTTTAA+GGG | + | chr2_2:40671513-40671532 | Msa0251250:intron | 30.0% |
| AGCATTACTTCTTATGTGTT+TGG | + | chr2_2:40671605-40671624 | Msa0251250:intron | 30.0% | |
| AGGCTAAAAATCAATTGTAG+AGG | + | chr2_2:40671709-40671728 | Msa0251250:intron | 30.0% | |
| TTTCGAAATTGAATCCAACT+CGG | - | chr2_2:40671756-40671775 | None:intergenic | 30.0% | |
| ATTATTCACATAGATGCAAG+CGG | + | chr2_2:40671797-40671816 | Msa0251250:intron | 30.0% | |
| !! | AGAATGTTATTTCTTGGGAA+GGG | + | chr2_2:40671900-40671919 | Msa0251250:intron | 30.0% |
| TCTTCAACATTTAGCACAAA+AGG | + | chr2_2:40672056-40672075 | Msa0251250:intron | 30.0% | |
| CTTCAACATTTAGCACAAAA+GGG | + | chr2_2:40672057-40672076 | Msa0251250:intron | 30.0% | |
| TTCAACATTTAGCACAAAAG+GGG | + | chr2_2:40672058-40672077 | Msa0251250:intron | 30.0% | |
| TATATACTTTGCAGCAACCT+AGG | - | chr2_2:40671129-40671148 | None:intergenic | 35.0% | |
| GATGTGGCTTATAATAGAGT+TGG | + | chr2_2:40671238-40671257 | Msa0251250:CDS | 35.0% | |
| TTACACTCTTGTCTCTGAAT+TGG | + | chr2_2:40671261-40671280 | Msa0251250:CDS | 35.0% | |
| TGATTTGACAAATGCTGTGT+TGG | + | chr2_2:40671312-40671331 | Msa0251250:CDS | 35.0% | |
| !!! | GTTGATTTTGAGGTTCATAG+TGG | + | chr2_2:40671361-40671380 | Msa0251250:intron | 35.0% |
| TGAGACGAACAATAAATTCG+AGG | + | chr2_2:40671689-40671708 | Msa0251250:intron | 35.0% | |
| TTATTCACATAGATGCAAGC+GGG | + | chr2_2:40671798-40671817 | Msa0251250:intron | 35.0% | |
| !! | GAGAATGTTATTTCTTGGGA+AGG | + | chr2_2:40671899-40671918 | Msa0251250:intron | 35.0% |
| !! | GAATGTTATTTCTTGGGAAG+GGG | + | chr2_2:40671901-40671920 | Msa0251250:intron | 35.0% |
| AAGCTTCTGTAGATGTTGAA+AGG | + | chr2_2:40671928-40671947 | Msa0251250:intron | 35.0% | |
| TGCATGGTATCAAATTTCAC+TGG | - | chr2_2:40672004-40672023 | None:intergenic | 35.0% | |
| ! | TTGAAGGGAGATAGTGATTT+TGG | - | chr2_2:40672145-40672164 | None:intergenic | 35.0% |
| ! | AAATTTGTTCTGTCATTCCC+TGG | + | chr2_2:40672175-40672194 | Msa0251250:intron | 35.0% |
| TATAAGAAAGTAGGAACTGC+AGG | - | chr2_2:40672300-40672319 | None:intergenic | 35.0% | |
| GCAGTTCCTACTTTCTTATA+TGG | + | chr2_2:40672300-40672319 | Msa0251250:intron | 35.0% | |
| !! | GATTCAATCAGAAGAGCATT+TGG | + | chr2_2:40672351-40672370 | Msa0251250:CDS | 35.0% |
| TATATACTTTGCAGCAACCT+AGG | - | chr2_2:40671129-40671148 | None:intergenic | 35.0% | |
| GATGTGGCTTATAATAGAGT+TGG | + | chr2_2:40671238-40671257 | Msa0251250:CDS | 35.0% | |
| TTACACTCTTGTCTCTGAAT+TGG | + | chr2_2:40671261-40671280 | Msa0251250:CDS | 35.0% | |
| TGATTTGACAAATGCTGTGT+TGG | + | chr2_2:40671312-40671331 | Msa0251250:CDS | 35.0% | |
| !!! | GTTGATTTTGAGGTTCATAG+TGG | + | chr2_2:40671361-40671380 | Msa0251250:intron | 35.0% |
| TGAGACGAACAATAAATTCG+AGG | + | chr2_2:40671689-40671708 | Msa0251250:intron | 35.0% | |
| TTATTCACATAGATGCAAGC+GGG | + | chr2_2:40671798-40671817 | Msa0251250:intron | 35.0% | |
| !! | GAGAATGTTATTTCTTGGGA+AGG | + | chr2_2:40671899-40671918 | Msa0251250:intron | 35.0% |
| !! | GAATGTTATTTCTTGGGAAG+GGG | + | chr2_2:40671901-40671920 | Msa0251250:intron | 35.0% |
| AAGCTTCTGTAGATGTTGAA+AGG | + | chr2_2:40671928-40671947 | Msa0251250:intron | 35.0% | |
| TGCATGGTATCAAATTTCAC+TGG | - | chr2_2:40672004-40672023 | None:intergenic | 35.0% | |
| ! | TTGAAGGGAGATAGTGATTT+TGG | - | chr2_2:40672145-40672164 | None:intergenic | 35.0% |
| ! | AAATTTGTTCTGTCATTCCC+TGG | + | chr2_2:40672175-40672194 | Msa0251250:intron | 35.0% |
| TATAAGAAAGTAGGAACTGC+AGG | - | chr2_2:40672300-40672319 | None:intergenic | 35.0% | |
| GCAGTTCCTACTTTCTTATA+TGG | + | chr2_2:40672300-40672319 | Msa0251250:intron | 35.0% | |
| !! | GATTCAATCAGAAGAGCATT+TGG | + | chr2_2:40672351-40672370 | Msa0251250:CDS | 35.0% |
| ! | AAGCAGAAACAAGAGTGCAT+TGG | + | chr2_2:40671156-40671175 | Msa0251250:CDS | 40.0% |
| TGATCAACAACACCAAGTCT+AGG | - | chr2_2:40671394-40671413 | None:intergenic | 40.0% | |
| TCTGTAGATGTTGAAAGGAC+TGG | + | chr2_2:40671933-40671952 | Msa0251250:intron | 40.0% | |
| GATACCATGCATATTGGTAG+TGG | + | chr2_2:40672013-40672032 | Msa0251250:intron | 40.0% | |
| ! | CTTTTATAGTGCAACCACCA+GGG | - | chr2_2:40672195-40672214 | None:intergenic | 40.0% |
| ! | ACTTTTATAGTGCAACCACC+AGG | - | chr2_2:40672196-40672215 | None:intergenic | 40.0% |
| GCTGCTCCATATAAGAAAGT+AGG | - | chr2_2:40672309-40672328 | None:intergenic | 40.0% | |
| ! | AAGCAGAAACAAGAGTGCAT+TGG | + | chr2_2:40671156-40671175 | Msa0251250:CDS | 40.0% |
| TGATCAACAACACCAAGTCT+AGG | - | chr2_2:40671394-40671413 | None:intergenic | 40.0% | |
| TCTGTAGATGTTGAAAGGAC+TGG | + | chr2_2:40671933-40671952 | Msa0251250:intron | 40.0% | |
| GATACCATGCATATTGGTAG+TGG | + | chr2_2:40672013-40672032 | Msa0251250:intron | 40.0% | |
| ! | CTTTTATAGTGCAACCACCA+GGG | - | chr2_2:40672195-40672214 | None:intergenic | 40.0% |
| ! | ACTTTTATAGTGCAACCACC+AGG | - | chr2_2:40672196-40672215 | None:intergenic | 40.0% |
| GCTGCTCCATATAAGAAAGT+AGG | - | chr2_2:40672309-40672328 | None:intergenic | 40.0% | |
| !! | GACAAATGCTGTGTTGGCTA+TGG | + | chr2_2:40671318-40671337 | Msa0251250:CDS | 45.0% |
| AGTGGAACTCATCCTAGACT+TGG | + | chr2_2:40671379-40671398 | Msa0251250:CDS | 45.0% | |
| ! | TCCACTGGTTGATGCTTCAT+TGG | + | chr2_2:40671426-40671445 | Msa0251250:CDS | 45.0% |
| ! | TCCAATGAAGCATCAACCAG+TGG | - | chr2_2:40671430-40671449 | None:intergenic | 45.0% |
| CTTCATTGGATCAAGCAGCT+AGG | + | chr2_2:40671440-40671459 | Msa0251250:CDS | 45.0% | |
| CAAACTAGAACCCATGTCAC+TGG | - | chr2_2:40671482-40671501 | None:intergenic | 45.0% | |
| !! | GACATGGGTTCTAGTTTGCA+AGG | + | chr2_2:40671484-40671503 | Msa0251250:CDS | 45.0% |
| TCGAAATTGTAGCTCCGAGT+TGG | + | chr2_2:40671739-40671758 | Msa0251250:intron | 45.0% | |
| GCAAGCGGGTGACATATAAT+TGG | + | chr2_2:40671812-40671831 | Msa0251250:intron | 45.0% | |
| GTTGCCACTACCAATATGCA+TGG | - | chr2_2:40672020-40672039 | None:intergenic | 45.0% | |
| TTTAGCAGTGAGCATGCTTC+AGG | + | chr2_2:40672118-40672137 | Msa0251250:intron | 45.0% | |
| TTTGTTCTGTCATTCCCTGG+TGG | + | chr2_2:40672178-40672197 | Msa0251250:intron | 45.0% | |
| ATATGGAGCAGCACATGAAG+AGG | + | chr2_2:40672317-40672336 | Msa0251250:CDS | 45.0% | |
| TATGGAGCAGCACATGAAGA+GGG | + | chr2_2:40672318-40672337 | Msa0251250:CDS | 45.0% | |
| !!! | CACTGGTTTTCGCTGGAATT+TGG | - | chr2_2:40672387-40672406 | None:intergenic | 45.0% |
| CAAATTCCAGCGAAAACCAG+TGG | + | chr2_2:40672385-40672404 | Msa0251250:CDS | 45.0% | |
| !! | GACAAATGCTGTGTTGGCTA+TGG | + | chr2_2:40671318-40671337 | Msa0251250:CDS | 45.0% |
| AGTGGAACTCATCCTAGACT+TGG | + | chr2_2:40671379-40671398 | Msa0251250:CDS | 45.0% | |
| ! | TCCACTGGTTGATGCTTCAT+TGG | + | chr2_2:40671426-40671445 | Msa0251250:CDS | 45.0% |
| ! | TCCAATGAAGCATCAACCAG+TGG | - | chr2_2:40671430-40671449 | None:intergenic | 45.0% |
| CTTCATTGGATCAAGCAGCT+AGG | + | chr2_2:40671440-40671459 | Msa0251250:CDS | 45.0% | |
| CAAACTAGAACCCATGTCAC+TGG | - | chr2_2:40671482-40671501 | None:intergenic | 45.0% | |
| !! | GACATGGGTTCTAGTTTGCA+AGG | + | chr2_2:40671484-40671503 | Msa0251250:CDS | 45.0% |
| TCGAAATTGTAGCTCCGAGT+TGG | + | chr2_2:40671739-40671758 | Msa0251250:intron | 45.0% | |
| GCAAGCGGGTGACATATAAT+TGG | + | chr2_2:40671812-40671831 | Msa0251250:intron | 45.0% | |
| GTTGCCACTACCAATATGCA+TGG | - | chr2_2:40672020-40672039 | None:intergenic | 45.0% | |
| TTTAGCAGTGAGCATGCTTC+AGG | + | chr2_2:40672118-40672137 | Msa0251250:intron | 45.0% | |
| TTTGTTCTGTCATTCCCTGG+TGG | + | chr2_2:40672178-40672197 | Msa0251250:intron | 45.0% | |
| ATATGGAGCAGCACATGAAG+AGG | + | chr2_2:40672317-40672336 | Msa0251250:CDS | 45.0% | |
| TATGGAGCAGCACATGAAGA+GGG | + | chr2_2:40672318-40672337 | Msa0251250:CDS | 45.0% | |
| !!! | CACTGGTTTTCGCTGGAATT+TGG | - | chr2_2:40672387-40672406 | None:intergenic | 45.0% |
| CAAATTCCAGCGAAAACCAG+TGG | + | chr2_2:40672385-40672404 | Msa0251250:CDS | 45.0% | |
| !! | TGCTGTGTTGGCTATGGTGA+AGG | + | chr2_2:40671324-40671343 | Msa0251250:CDS | 50.0% |
| ATCAAGCAGCTAGGACTGCA+AGG | + | chr2_2:40671449-40671468 | Msa0251250:CDS | 50.0% | |
| ! | AAGGTGTCTAGCCAGTGACA+TGG | + | chr2_2:40671468-40671487 | Msa0251250:CDS | 50.0% |
| AGGTGTCTAGCCAGTGACAT+GGG | + | chr2_2:40671469-40671488 | Msa0251250:CDS | 50.0% | |
| ATGGAGCAGCACATGAAGAG+GGG | + | chr2_2:40672319-40672338 | Msa0251250:CDS | 50.0% | |
| TCCAGCGAAAACCAGTGGAT+TGG | + | chr2_2:40672390-40672409 | Msa0251250:CDS | 50.0% | |
| ! | ACTTTTGCACGCCAATCCAC+TGG | - | chr2_2:40672404-40672423 | None:intergenic | 50.0% |
| !! | TGCTGTGTTGGCTATGGTGA+AGG | + | chr2_2:40671324-40671343 | Msa0251250:CDS | 50.0% |
| ATCAAGCAGCTAGGACTGCA+AGG | + | chr2_2:40671449-40671468 | Msa0251250:CDS | 50.0% | |
| ! | AAGGTGTCTAGCCAGTGACA+TGG | + | chr2_2:40671468-40671487 | Msa0251250:CDS | 50.0% |
| AGGTGTCTAGCCAGTGACAT+GGG | + | chr2_2:40671469-40671488 | Msa0251250:CDS | 50.0% | |
| ATGGAGCAGCACATGAAGAG+GGG | + | chr2_2:40672319-40672338 | Msa0251250:CDS | 50.0% | |
| TCCAGCGAAAACCAGTGGAT+TGG | + | chr2_2:40672390-40672409 | Msa0251250:CDS | 50.0% | |
| ! | ACTTTTGCACGCCAATCCAC+TGG | - | chr2_2:40672404-40672423 | None:intergenic | 50.0% |
| !!! | GCCAATCCACTGGTTTTCGC+TGG | - | chr2_2:40672394-40672413 | None:intergenic | 55.0% |
| !!! | GCCAATCCACTGGTTTTCGC+TGG | - | chr2_2:40672394-40672413 | None:intergenic | 55.0% |
| GAGCAGCACATGAAGAGGGG+AGG | + | chr2_2:40672322-40672341 | Msa0251250:CDS | 60.0% | |
| GAGCAGCACATGAAGAGGGG+AGG | + | chr2_2:40672322-40672341 | Msa0251250:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 40671112 | 40672452 | 40671112 | ID=Msa0251250;Name=Msa0251250 |
| chr2_2 | mRNA | 40671112 | 40672452 | 40671112 | ID=Msa0251250-mRNA-1;Parent=Msa0251250;Name=Msa0251250-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.5|0|1|0|0|3|0|177 |
| chr2_2 | exon | 40671112 | 40671360 | 40671112 | ID=Msa0251250-mRNA-1:exon:12699;Parent=Msa0251250-mRNA-1 |
| chr2_2 | exon | 40671373 | 40671505 | 40671373 | ID=Msa0251250-mRNA-1:exon:12700;Parent=Msa0251250-mRNA-1 |
| chr2_2 | exon | 40672304 | 40672452 | 40672304 | ID=Msa0251250-mRNA-1:exon:12701;Parent=Msa0251250-mRNA-1 |
| chr2_2 | CDS | 40671112 | 40671360 | 40671112 | ID=Msa0251250-mRNA-1:cds;Parent=Msa0251250-mRNA-1 |
| chr2_2 | CDS | 40671373 | 40671505 | 40671373 | ID=Msa0251250-mRNA-1:cds;Parent=Msa0251250-mRNA-1 |
| chr2_2 | CDS | 40672304 | 40672452 | 40672304 | ID=Msa0251250-mRNA-1:cds;Parent=Msa0251250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
