AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0520320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520320 MtrunA17_Chr3g0135991 96.927 358 11 0 1 358 1 358 0.0 726
Msa0520320 MtrunA17_Chr1g0186361 29.778 225 151 5 81 300 576 798 6.42e-22 97.4
Msa0520320 MtrunA17_Chr1g0168291 25.789 190 136 4 81 267 138 325 1.77e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520320 AT4G33110.1 71.268 355 102 0 4 358 1 355 0.0 560
Msa0520320 AT4G33110.2 71.268 355 102 0 4 358 1 355 0.0 560
Msa0520320 AT4G33120.1 68.732 355 111 0 4 358 1 355 0.0 540
Msa0520320 AT3G23510.1 26.772 254 176 6 81 329 577 825 1.68e-19 90.5
Msa0520320 AT3G23480.1 31.053 190 125 5 81 267 168 354 2.65e-19 89.4
Msa0520320 AT3G23530.1 26.378 254 177 6 81 329 577 825 3.28e-19 89.7
Msa0520320 AT3G23470.3 28.571 189 132 3 81 267 196 383 6.41e-19 88.2
Msa0520320 AT3G23470.2 28.571 189 132 3 81 267 196 383 6.41e-19 88.2
Msa0520320 AT3G23470.1 28.571 189 132 3 81 267 169 356 6.74e-19 88.2
Msa0520320 AT3G23480.3 26.866 201 139 6 71 267 100 296 8.21e-14 72.8
Msa0520320 AT3G23480.2 24.906 265 186 9 71 329 137 394 8.50e-14 72.8

Find 83 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATATGTTGATTCCATAAT+TGG 0.122160 3_4:+72893412 None:intergenic
AATTCGTAATGTTGAGATTT+TGG 0.142343 3_4:+72895395 None:intergenic
GAACTGTATGACCATCTTTC+AGG 0.193403 3_4:+72894604 None:intergenic
GACTTTCATCAAGCCAATTA+TGG 0.256433 3_4:-72893425 Msa0520320:CDS
TCTTTCTTTAAGCTGGTTCT+TGG 0.257853 3_4:-72895365 Msa0520320:CDS
ATAGCTGTAGCAGAACTATT+TGG 0.260405 3_4:-72893343 Msa0520320:CDS
GTCAACCATTGGCTGGTAAA+TGG 0.264020 3_4:-72893620 Msa0520320:CDS
CTTGATTTGAGAATTGATTC+AGG 0.280867 3_4:-72893243 Msa0520320:three_prime_UTR
TACATCAGTTCCAGGGTTAC+AGG 0.303593 3_4:-72894531 Msa0520320:CDS
TCTAACCTCAAACATTTCTA+TGG 0.304284 3_4:+72894210 None:intergenic
AATCAAGAGAAGAATGGTTT+TGG 0.307104 3_4:+72893259 None:intergenic
ACGTGTGTGTCTTTGTTTAT+TGG 0.307858 3_4:-72895794 Msa0520320:five_prime_UTR
ATTACAAGATACTTCTTTAC+CGG 0.330934 3_4:-72893840 Msa0520320:CDS
AGAAATGATGAACGAATAAA+AGG 0.335415 3_4:+72894057 None:intergenic
CCTGGAACTGATGTAATTCT+TGG 0.344987 3_4:+72894539 None:intergenic
CCAAGAATTACATCAGTTCC+AGG 0.350351 3_4:-72894539 Msa0520320:CDS
CTTGATGTCGGATGCGGTTG+GGG 0.363488 3_4:-72894582 Msa0520320:CDS
TCTTGATGTCGGATGCGGTT+GGG 0.364766 3_4:-72894583 Msa0520320:CDS
AGTCTCCTGATGACGGCATC+AGG 0.366796 3_4:+72895633 None:intergenic
TCAACCATTGGCTGGTAAAT+GGG 0.399932 3_4:-72893619 Msa0520320:CDS
AGAAAGTACAGTGAGCAAAT+TGG 0.401458 3_4:+72895535 None:intergenic
ACCTACCTCTTTCTTTAAGC+TGG 0.401709 3_4:-72895372 Msa0520320:CDS
AGCCTCTTCCAATGTCTTTG+AGG 0.408387 3_4:+72894665 None:intergenic
TGTCAACTACGACGGCCATT+TGG 0.412090 3_4:+72893071 None:intergenic
TGCTCCCTGATGCCGTCATC+AGG 0.412465 3_4:-72895638 Msa0520320:CDS
GAACTATTTGGATACAATAA+TGG 0.412686 3_4:-72893331 Msa0520320:CDS
ACATCAGTACTGACAGCAAT+AGG 0.445899 3_4:+72895419 None:intergenic
TTCTTGATGTCGGATGCGGT+TGG 0.446691 3_4:-72894584 Msa0520320:CDS
CTACCAAATGGACTGTCTAC+TGG 0.453211 3_4:-72893378 Msa0520320:CDS
AGACATTAGTACATTTGAAA+TGG 0.457001 3_4:-72894257 Msa0520320:CDS
CCAATTATGGAATCAACATA+TGG 0.460490 3_4:-72893412 Msa0520320:CDS
AGCTTCACGGTGGTGTTGTA+AGG 0.461791 3_4:+72895687 None:intergenic
ATTGCAGATTCCTGTAACCC+TGG 0.462607 3_4:+72894521 None:intergenic
CGAAGAGTGGCTCAAAAGAA+TGG 0.463992 3_4:-72893458 Msa0520320:CDS
GCCATCCACTTTCATCCAGT+TGG 0.469157 3_4:+72894079 None:intergenic
CTCTTCTGCCTCAAAGACAT+TGG 0.471861 3_4:-72894673 Msa0520320:CDS
AAGTGTGGTGTGGTAGTTGA+TGG 0.474442 3_4:-72895736 Msa0520320:exon
TGCTGCAGGCATAGTTCCTC+CGG 0.476336 3_4:+72893821 None:intergenic
AGCATTTGCCTACCACTTTG+AGG 0.477976 3_4:-72894027 Msa0520320:intron
TTCTCAAGAAGATATCCAAC+TGG 0.482343 3_4:-72894094 Msa0520320:CDS
AAGAACCAGCTTAAAGAAAG+AGG 0.482405 3_4:+72895367 None:intergenic
GCAAAGATTCAGCTACCAAA+TGG 0.488606 3_4:-72893390 Msa0520320:CDS
GAAAGCTGAAGTTCAGAAGA+AGG 0.489672 3_4:+72895567 None:intergenic
TGTGACTTGTTCTGTTCTTG+TGG 0.492519 3_4:+72895768 None:intergenic
TTCTCAAATCAAGAGAAGAA+TGG 0.496199 3_4:+72893253 None:intergenic
TCTCCAGTAGACAGTCCATT+TGG 0.500310 3_4:+72893375 None:intergenic
TTGGAAACAACCTCAAATAC+AGG 0.508399 3_4:-72895346 Msa0520320:intron
CTACGACGGCCATTTGGCAT+TGG 0.511496 3_4:+72893077 None:intergenic
ACAGTTCTTGATGTCGGATG+CGG 0.517068 3_4:-72894588 Msa0520320:CDS
AGAGTTCACTACCGGGGCAT+AGG 0.525860 3_4:+72892765 None:intergenic
GATACAATAATGGTGAAGAA+TGG 0.527408 3_4:-72893321 Msa0520320:CDS
ACCACCGTGAAGCTGATGCT+TGG 0.540117 3_4:-72895678 Msa0520320:CDS
TGCCTCAAAGACATTGGAAG+AGG 0.542100 3_4:-72894667 Msa0520320:CDS
TGAACCAAGCATCAGCTTCA+CGG 0.542958 3_4:+72895674 None:intergenic
GTTTCCCATTTACCAGCCAA+TGG 0.543039 3_4:+72893615 None:intergenic
GATATCCAACTGGATGAAAG+TGG 0.544699 3_4:-72894084 Msa0520320:CDS
GAAAACAGACCAATGCCAAA+TGG 0.548848 3_4:-72893086 Msa0520320:three_prime_UTR
GTGGTAGTTGATGGAAAAGA+TGG 0.551164 3_4:-72895727 Msa0520320:exon
ATCAGAGTGAAATCTTCACT+TGG 0.556379 3_4:-72893108 Msa0520320:three_prime_UTR
AGTGGTAGGCAAATGCTTTG+TGG 0.556397 3_4:+72894033 None:intergenic
CAATAATGGTGAAGAATGGA+TGG 0.562198 3_4:-72893317 Msa0520320:CDS
GCCGTCGTAGTTGACACAAA+AGG 0.564039 3_4:-72893064 Msa0520320:three_prime_UTR
ATGTTACTGTTGTCAACCAT+TGG 0.570038 3_4:-72893631 Msa0520320:CDS
TAAAGAAGTAGATTTGCTGC+AGG 0.572831 3_4:+72893807 None:intergenic
CAAGAATTACATCAGTTCCA+GGG 0.577127 3_4:-72894538 Msa0520320:CDS
TACTGTTGTCAACCATTGGC+TGG 0.579302 3_4:-72893627 Msa0520320:CDS
GAAGTTTACCTCAAAGTGGT+AGG 0.587833 3_4:+72894019 None:intergenic
GAGAGATCAAACCTGAAAGA+TGG 0.590354 3_4:-72894615 Msa0520320:CDS
GGTCATACAGTTCTTGATGT+CGG 0.592044 3_4:-72894594 Msa0520320:CDS
GGAAACACTACGCACAAACC+AGG 0.597454 3_4:-72893598 Msa0520320:intron
GGAGCTGCAGCTGCAAAATG+TGG 0.607827 3_4:-72894293 Msa0520320:CDS
ACCAGCTTAAAGAAAGAGGT+AGG 0.613974 3_4:+72895371 None:intergenic
ACGTGTGAGTCTCCTGATGA+CGG 0.614974 3_4:+72895626 None:intergenic
TCCAACTGGATGAAAGTGGA+TGG 0.617956 3_4:-72894080 Msa0520320:CDS
TTGATGTCGGATGCGGTTGG+GGG 0.625116 3_4:-72894581 Msa0520320:CDS
ATATGAAGTTTACCTCAAAG+TGG 0.632893 3_4:+72894015 None:intergenic
GTCTCCTGATGACGGCATCA+GGG 0.634408 3_4:+72895634 None:intergenic
ACAAGATACTTCTTTACCGG+AGG 0.634907 3_4:-72893837 Msa0520320:CDS
GTCACAGAAGTCAAGAAGTG+TGG 0.656919 3_4:-72895751 Msa0520320:five_prime_UTR
AAAGACACACACGTACGTTG+TGG 0.660038 3_4:+72895803 None:intergenic
AGAAGTCAAGAAGTGTGGTG+TGG 0.696584 3_4:-72895746 Msa0520320:five_prime_UTR
AAGGCTTGTAAGAAGAACGA+AGG 0.696633 3_4:+72895586 None:intergenic
ACCAAGCATCAGCTTCACGG+TGG 0.763639 3_4:+72895677 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAGTAAAAAGATA+AGG - chr3_4:72892778-72892797 Msa0520320:intron 10.0%
!!! AATTCAATTTTTAATTTTCT+TGG + chr3_4:72895784-72895803 None:intergenic 10.0%
!! TGTTCTATATATAACAAAAT+CGG + chr3_4:72893114-72893133 None:intergenic 15.0%
!!! TATAAGTTATTTCTATACAA+GGG - chr3_4:72893514-72893533 Msa0520320:intron 15.0%
!!! ACAATTTTAAAAACAAAGTA+TGG - chr3_4:72895726-72895745 Msa0520320:exon 15.0%
!! TTAAATTGTTTATCCAAACA+CGG + chr3_4:72893453-72893472 None:intergenic 20.0%
!!! GTATAAGTTATTTCTATACA+AGG - chr3_4:72893513-72893532 Msa0520320:intron 20.0%
!!! AATCATTTTACATCGTATTA+AGG + chr3_4:72893805-72893824 None:intergenic 20.0%
!! TGAACATTACATAAATCATA+AGG + chr3_4:72893897-72893916 None:intergenic 20.0%
!! TACAATATCAAGAAATATAC+CGG + chr3_4:72894163-72894182 None:intergenic 20.0%
!! TTCACTCTGATAAAAAAAAT+AGG + chr3_4:72895506-72895525 None:intergenic 20.0%
!!! GAATAAATTTCATTTTAGTG+TGG - chr3_4:72895587-72895606 Msa0520320:CDS 20.0%
!! ATTCGTAATGTTGAGATTTT+GGG + chr3_4:72893230-72893249 None:intergenic 25.0%
!! AATTCGTAATGTTGAGATTT+TGG + chr3_4:72893231-72893250 None:intergenic 25.0%
! CTTAAAAATACCTGTATTTG+AGG + chr3_4:72893290-72893309 None:intergenic 25.0%
! CTTATACAATAAGCTGAAAA+CGG - chr3_4:72893601-72893620 Msa0520320:CDS 25.0%
!! GATTTATTTGAGTTTATCCA+CGG + chr3_4:72893690-72893709 None:intergenic 25.0%
! CTCAAATAAATCAAGTCAAA+CGG - chr3_4:72893698-72893717 Msa0520320:intron 25.0%
! GATGTAAAATGATTGTTTCA+TGG - chr3_4:72893811-72893830 Msa0520320:CDS 25.0%
! ATGTTCATATTTGTATGAAC+TGG - chr3_4:72893910-72893929 Msa0520320:intron 25.0%
! AGACATTAGTACATTTGAAA+TGG - chr3_4:72894366-72894385 Msa0520320:intron 25.0%
!! ATTTTCCATAGAAATGTTTG+AGG - chr3_4:72894408-72894427 Msa0520320:intron 25.0%
! AGAAATGATGAACGAATAAA+AGG + chr3_4:72894569-72894588 None:intergenic 25.0%
!!! CAATTAGTCTTATTAGGTAT+TGG + chr3_4:72894687-72894706 None:intergenic 25.0%
!!! AGAACTCAATTAGTCTTATT+AGG + chr3_4:72894693-72894712 None:intergenic 25.0%
! ATTACAAGATACTTCTTTAC+CGG - chr3_4:72894783-72894802 Msa0520320:intron 25.0%
! GCTTTACACAACAAAATTAT+CGG + chr3_4:72894909-72894928 None:intergenic 25.0%
! AGAATCATGACGAAATATAA+AGG + chr3_4:72894931-72894950 None:intergenic 25.0%
! TCACTTGTAATTGAATTCTT+TGG - chr3_4:72894953-72894972 Msa0520320:intron 25.0%
! TCTATCCATAGTTTACTATT+TGG - chr3_4:72895088-72895107 Msa0520320:intron 25.0%
! GAACTATTTGGATACAATAA+TGG - chr3_4:72895292-72895311 Msa0520320:intron 25.0%
!!! AAATTTCATTTTAGTGTGGT+TGG - chr3_4:72895591-72895610 Msa0520320:CDS 25.0%
! ATCTAAGAACTGATTCATCA+AGG - chr3_4:72893339-72893358 Msa0520320:CDS 30.0%
! TCTAAGAACTGATTCATCAA+GGG - chr3_4:72893340-72893359 Msa0520320:CDS 30.0%
TATATTACTAAGACCGTGTT+TGG - chr3_4:72893437-72893456 Msa0520320:CDS 30.0%
AATAAGCTGAAAACGGTTTA+TGG - chr3_4:72893608-72893627 Msa0520320:CDS 30.0%
ACTATCTTTAACGAATATGG+TGG - chr3_4:72893721-72893740 Msa0520320:intron 30.0%
!!! AATAAAAGCTTTTTGAGTCG+TGG + chr3_4:72894129-72894148 None:intergenic 30.0%
! GACTCAAAAAGCTTTTATTG+AGG - chr3_4:72894130-72894149 Msa0520320:intron 30.0%
AAACTATATGACATGCACAA+TGG + chr3_4:72894199-72894218 None:intergenic 30.0%
! ATGATTTGCAAGACAAGTAT+TGG + chr3_4:72894262-72894281 None:intergenic 30.0%
TCTAACCTCAAACATTTCTA+TGG + chr3_4:72894416-72894435 None:intergenic 30.0%
!! ATGTTTGAGGTTAGATTTTG+TGG - chr3_4:72894421-72894440 Msa0520320:intron 30.0%
!! TGTTTGAGGTTAGATTTTGT+GGG - chr3_4:72894422-72894441 Msa0520320:intron 30.0%
ATATGAAGTTTACCTCAAAG+TGG + chr3_4:72894611-72894630 None:intergenic 30.0%
AGGACAAAAATGAAGATGAT+TGG - chr3_4:72894760-72894779 Msa0520320:intron 30.0%
CAACATAATTCAAGCTTACT+TGG + chr3_4:72894845-72894864 None:intergenic 30.0%
GTTGGAATATGCATAATTGT+TGG - chr3_4:72895047-72895066 Msa0520320:intron 30.0%
CGTTACCAAATAGTAAACTA+TGG + chr3_4:72895096-72895115 None:intergenic 30.0%
!! CCATATGTTGATTCCATAAT+TGG + chr3_4:72895214-72895233 None:intergenic 30.0%
CCAATTATGGAATCAACATA+TGG - chr3_4:72895211-72895230 Msa0520320:intron 30.0%
GATACAATAATGGTGAAGAA+TGG - chr3_4:72895302-72895321 Msa0520320:intron 30.0%
! AATCAAGAGAAGAATGGTTT+TGG + chr3_4:72895367-72895386 None:intergenic 30.0%
TTCTCAAATCAAGAGAAGAA+TGG + chr3_4:72895373-72895392 None:intergenic 30.0%
! CTTGATTTGAGAATTGATTC+AGG - chr3_4:72895380-72895399 Msa0520320:CDS 30.0%
AAAACAAAAACTGTTCAACG+AGG - chr3_4:72895415-72895434 Msa0520320:CDS 30.0%
CTCTGATAAAAAAAATAGGC+AGG + chr3_4:72895502-72895521 None:intergenic 30.0%
! GTACACTCAAGTCTTTAAAA+TGG + chr3_4:72895651-72895670 None:intergenic 30.0%
TTTAAAGACTTGAGTGTACT+CGG - chr3_4:72895652-72895671 Msa0520320:CDS 30.0%
TACACAAACTTACAATTCTG+TGG - chr3_4:72895692-72895711 Msa0520320:CDS 30.0%
ACACAAACTTACAATTCTGT+GGG - chr3_4:72895693-72895712 Msa0520320:CDS 30.0%
! ACGTGTGTGTCTTTGTTTAT+TGG - chr3_4:72892829-72892848 Msa0520320:intron 35.0%
! AGAAAGTACAGTGAGCAAAT+TGG + chr3_4:72893091-72893110 None:intergenic 35.0%
AAGAACCAGCTTAAAGAAAG+AGG + chr3_4:72893259-72893278 None:intergenic 35.0%
! TCTTTCTTTAAGCTGGTTCT+TGG - chr3_4:72893258-72893277 Msa0520320:three_prime_UTR 35.0%
TTGGAAACAACCTCAAATAC+AGG - chr3_4:72893277-72893296 Msa0520320:exon 35.0%
TGCAGTTAAGCTATACACAA+AGG + chr3_4:72893403-72893422 None:intergenic 35.0%
TGTGTATAGCTTAACTGCAT+TGG - chr3_4:72893404-72893423 Msa0520320:CDS 35.0%
GTGTATAGCTTAACTGCATT+GGG - chr3_4:72893405-72893424 Msa0520320:CDS 35.0%
AAAACACCTGTGAGACTATT+AGG + chr3_4:72893664-72893683 None:intergenic 35.0%
CGGACTATCTTTAACGAATA+TGG - chr3_4:72893718-72893737 Msa0520320:intron 35.0%
TCTTTAACGAATATGGTGGT+AGG - chr3_4:72893725-72893744 Msa0520320:intron 35.0%
CTTTAACGAATATGGTGGTA+GGG - chr3_4:72893726-72893745 Msa0520320:intron 35.0%
CAAGAATTACATCAGTTCCA+GGG - chr3_4:72894085-72894104 Msa0520320:CDS 35.0%
! CTTTTATTGAGGAGAAATGC+CGG - chr3_4:72894141-72894160 Msa0520320:intron 35.0%
TTCTCAAGAAGATATCCAAC+TGG - chr3_4:72894529-72894548 Msa0520320:CDS 35.0%
CAAACTGAGATAGTCAACTA+AGG + chr3_4:72894638-72894657 None:intergenic 35.0%
!! TACGTGCTACTTATACATGT+AGG - chr3_4:72894740-72894759 Msa0520320:intron 35.0%
!! TAAAGAAGTAGATTTGCTGC+AGG + chr3_4:72894819-72894838 None:intergenic 35.0%
GGTACTACTGCAATACTATT+GGG + chr3_4:72894888-72894907 None:intergenic 35.0%
!! AATTCTTTGGTGATGTGTGA+AGG - chr3_4:72894966-72894985 Msa0520320:intron 35.0%
ATGTTACTGTTGTCAACCAT+TGG - chr3_4:72894992-72895011 Msa0520320:intron 35.0%
CAATTATGCATATTCCAACC+TGG + chr3_4:72895046-72895065 None:intergenic 35.0%
!!! ATTTATTTTGCAGCGAAGAG+TGG - chr3_4:72895152-72895171 Msa0520320:intron 35.0%
GACTTTCATCAAGCCAATTA+TGG - chr3_4:72895198-72895217 Msa0520320:intron 35.0%
ATAGCTGTAGCAGAACTATT+TGG - chr3_4:72895280-72895299 Msa0520320:intron 35.0%
CAATAATGGTGAAGAATGGA+TGG - chr3_4:72895306-72895325 Msa0520320:intron 35.0%
ATCAGAGTGAAATCTTCACT+TGG - chr3_4:72895515-72895534 Msa0520320:intron 35.0%
TTAAAGACTTGAGTGTACTC+GGG - chr3_4:72895653-72895672 Msa0520320:CDS 35.0%
!!! CGTTGTGGTAGTCTTGTTTT+CGG + chr3_4:72892808-72892827 None:intergenic 40.0%
!! TGTGACTTGTTCTGTTCTTG+TGG + chr3_4:72892858-72892877 None:intergenic 40.0%
!! GTGGTAGTTGATGGAAAAGA+TGG - chr3_4:72892896-72892915 Msa0520320:intron 40.0%
AAGGCTTGTAAGAAGAACGA+AGG + chr3_4:72893040-72893059 None:intergenic 40.0%
GAAAGCTGAAGTTCAGAAGA+AGG + chr3_4:72893059-72893078 None:intergenic 40.0%
!! ACATCAGTACTGACAGCAAT+AGG + chr3_4:72893207-72893226 None:intergenic 40.0%
ACCTACCTCTTTCTTTAAGC+TGG - chr3_4:72893251-72893270 Msa0520320:three_prime_UTR 40.0%
ACCAGCTTAAAGAAAGAGGT+AGG + chr3_4:72893255-72893274 None:intergenic 40.0%
ACGGTTTATGGACATGTCAT+AGG - chr3_4:72893620-72893639 Msa0520320:CDS 40.0%
GTTTCATGGATGCAGTTTGT+TGG - chr3_4:72893825-72893844 Msa0520320:CDS 40.0%
GAGAGATCAAACCTGAAAGA+TGG - chr3_4:72894008-72894027 Msa0520320:intron 40.0%
GAACTGTATGACCATCTTTC+AGG + chr3_4:72894022-72894041 None:intergenic 40.0%
GGTCATACAGTTCTTGATGT+CGG - chr3_4:72894029-72894048 Msa0520320:CDS 40.0%
CCTGGAACTGATGTAATTCT+TGG + chr3_4:72894087-72894106 None:intergenic 40.0%
CCAAGAATTACATCAGTTCC+AGG - chr3_4:72894084-72894103 Msa0520320:CDS 40.0%
AACAAACAGCTCTTCTTGCA+TGG - chr3_4:72894234-72894253 Msa0520320:CDS 40.0%
GTTCTTCATATGCTGTGTCA+TGG + chr3_4:72894499-72894518 None:intergenic 40.0%
GATATCCAACTGGATGAAAG+TGG - chr3_4:72894539-72894558 Msa0520320:CDS 40.0%
GAAGTTTACCTCAAAGTGGT+AGG + chr3_4:72894607-72894626 None:intergenic 40.0%
ACAAGATACTTCTTTACCGG+AGG - chr3_4:72894786-72894805 Msa0520320:intron 40.0%
CGGTACTACTGCAATACTAT+TGG + chr3_4:72894889-72894908 None:intergenic 40.0%
! TCAACCATTGGCTGGTAAAT+GGG - chr3_4:72895004-72895023 Msa0520320:intron 40.0%
GCAAAGATTCAGCTACCAAA+TGG - chr3_4:72895233-72895252 Msa0520320:intron 40.0%
GAAAACAGACCAATGCCAAA+TGG - chr3_4:72895537-72895556 Msa0520320:intron 40.0%
! TCCTTTTGTGTCAACTACGA+CGG + chr3_4:72895563-72895582 None:intergenic 40.0%
AACACTCTCATTCTAGCACT+GGG + chr3_4:72895760-72895779 None:intergenic 40.0%
AAAGACACACACGTACGTTG+TGG + chr3_4:72892823-72892842 None:intergenic 45.0%
GTCACAGAAGTCAAGAAGTG+TGG - chr3_4:72892872-72892891 Msa0520320:intron 45.0%
! AGAAGTCAAGAAGTGTGGTG+TGG - chr3_4:72892877-72892896 Msa0520320:intron 45.0%
AAGTGTGGTGTGGTAGTTGA+TGG - chr3_4:72892887-72892906 Msa0520320:intron 45.0%
TGAACCAAGCATCAGCTTCA+CGG + chr3_4:72892952-72892971 None:intergenic 45.0%
! ACTGATTCATCAAGGGTGTG+TGG - chr3_4:72893347-72893366 Msa0520320:CDS 45.0%
! CTGATTCATCAAGGGTGTGT+GGG - chr3_4:72893348-72893367 Msa0520320:CDS 45.0%
GTGTGGGATGAATGAATGGT+AGG - chr3_4:72893364-72893383 Msa0520320:CDS 45.0%
GTTCTGCCTAATAGTCTCAC+AGG - chr3_4:72893655-72893674 Msa0520320:intron 45.0%
CGAATATGGTGGTAGGGTAA+AGG - chr3_4:72893732-72893751 Msa0520320:intron 45.0%
CTCTTCTGCCTCAAAGACAT+TGG - chr3_4:72893950-72893969 Msa0520320:intron 45.0%
TGCCTCAAAGACATTGGAAG+AGG - chr3_4:72893956-72893975 Msa0520320:intron 45.0%
AGCCTCTTCCAATGTCTTTG+AGG + chr3_4:72893961-72893980 None:intergenic 45.0%
ACAGTTCTTGATGTCGGATG+CGG - chr3_4:72894035-72894054 Msa0520320:CDS 45.0%
TACATCAGTTCCAGGGTTAC+AGG - chr3_4:72894092-72894111 Msa0520320:CDS 45.0%
ATTGCAGATTCCTGTAACCC+TGG + chr3_4:72894105-72894124 None:intergenic 45.0%
TCCAACTGGATGAAAGTGGA+TGG - chr3_4:72894543-72894562 Msa0520320:CDS 45.0%
AGTGGTAGGCAAATGCTTTG+TGG + chr3_4:72894593-72894612 None:intergenic 45.0%
AGCATTTGCCTACCACTTTG+AGG - chr3_4:72894596-72894615 Msa0520320:CDS 45.0%
TACTGTTGTCAACCATTGGC+TGG - chr3_4:72894996-72895015 Msa0520320:intron 45.0%
! GTCAACCATTGGCTGGTAAA+TGG - chr3_4:72895003-72895022 Msa0520320:intron 45.0%
GTTTCCCATTTACCAGCCAA+TGG + chr3_4:72895011-72895030 None:intergenic 45.0%
CGAAGAGTGGCTCAAAAGAA+TGG - chr3_4:72895165-72895184 Msa0520320:intron 45.0%
!! CTACCAAATGGACTGTCTAC+TGG - chr3_4:72895245-72895264 Msa0520320:intron 45.0%
TCTCCAGTAGACAGTCCATT+TGG + chr3_4:72895251-72895270 None:intergenic 45.0%
CAACACTCTCATTCTAGCAC+TGG + chr3_4:72895761-72895780 None:intergenic 45.0%
! GAATTTTCTGCTAGAGCTCC+AGG - chr3_4:72895799-72895818 Msa0520320:five_prime_UTR 45.0%
!! AGCTTCACGGTGGTGTTGTA+AGG + chr3_4:72892939-72892958 None:intergenic 50.0%
ACGTGTGAGTCTCCTGATGA+CGG + chr3_4:72893000-72893019 None:intergenic 50.0%
GGGTGTGTGGGATGAATGAA+TGG - chr3_4:72893360-72893379 Msa0520320:CDS 50.0%
!! CTCACAGGTGTTTTTGTCCG+TGG - chr3_4:72893670-72893689 Msa0520320:intron 50.0%
TTCTTGATGTCGGATGCGGT+TGG - chr3_4:72894039-72894058 Msa0520320:CDS 50.0%
TCTTGATGTCGGATGCGGTT+GGG - chr3_4:72894040-72894059 Msa0520320:CDS 50.0%
! TTTTTCACTGCCCCCTTGTC+AGG - chr3_4:72894308-72894327 Msa0520320:intron 50.0%
! TTTTCACTGCCCCCTTGTCA+GGG - chr3_4:72894309-72894328 Msa0520320:intron 50.0%
GCCATCCACTTTCATCCAGT+TGG + chr3_4:72894547-72894566 None:intergenic 50.0%
GGAAACACTACGCACAAACC+AGG - chr3_4:72895025-72895044 Msa0520320:intron 50.0%
ACACTACGCACAAACCAGGT+TGG - chr3_4:72895029-72895048 Msa0520320:intron 50.0%
TGTCAACTACGACGGCCATT+TGG + chr3_4:72895555-72895574 None:intergenic 50.0%
GCCGTCGTAGTTGACACAAA+AGG - chr3_4:72895559-72895578 Msa0520320:CDS 50.0%
AAGACTTGAGTGTACTCGGG+TGG - chr3_4:72895656-72895675 Msa0520320:CDS 50.0%
ACCACCGTGAAGCTGATGCT+TGG - chr3_4:72892945-72892964 Msa0520320:intron 55.0%
ACCAAGCATCAGCTTCACGG+TGG + chr3_4:72892949-72892968 None:intergenic 55.0%
!! GTCTCCTGATGACGGCATCA+GGG + chr3_4:72892992-72893011 None:intergenic 55.0%
!! AGTCTCCTGATGACGGCATC+AGG + chr3_4:72892993-72893012 None:intergenic 55.0%
CTTGATGTCGGATGCGGTTG+GGG - chr3_4:72894041-72894060 Msa0520320:CDS 55.0%
TTGATGTCGGATGCGGTTGG+GGG - chr3_4:72894042-72894061 Msa0520320:CDS 55.0%
GGAGCTGCAGCTGCAAAATG+TGG - chr3_4:72894330-72894349 Msa0520320:intron 55.0%
TGCTGCAGGCATAGTTCCTC+CGG + chr3_4:72894805-72894824 None:intergenic 55.0%
CTACGACGGCCATTTGGCAT+TGG + chr3_4:72895549-72895568 None:intergenic 55.0%
! CTGCTAGAGCTCCAGGTTGA+TGG - chr3_4:72895806-72895825 Msa0520320:five_prime_UTR 55.0%
!! CTCCAGGTTGATGGCGAAGA+GGG - chr3_4:72895815-72895834 Msa0520320:five_prime_UTR 55.0%
TTCCCTCTTCGCCATCAACC+TGG + chr3_4:72895820-72895839 None:intergenic 55.0%
!! AGGTTGATGGCGAAGAGGGA+AGG - chr3_4:72895819-72895838 Msa0520320:five_prime_UTR 55.0%
!! GGTTGATGGCGAAGAGGGAA+GGG - chr3_4:72895820-72895839 Msa0520320:five_prime_UTR 55.0%
!! GTTGATGGCGAAGAGGGAAG+GGG - chr3_4:72895821-72895840 Msa0520320:five_prime_UTR 55.0%
!! TTGATGGCGAAGAGGGAAGG+GGG - chr3_4:72895822-72895841 Msa0520320:five_prime_UTR 55.0%
TGCTCCCTGATGCCGTCATC+AGG - chr3_4:72892985-72893004 Msa0520320:intron 60.0%
AGCTGCAGCTCCCTGACAAG+GGG + chr3_4:72894322-72894341 None:intergenic 60.0%
CAGCTGCAGCTCCCTGACAA+GGG + chr3_4:72894323-72894342 None:intergenic 60.0%
!! GCTCCAGGTTGATGGCGAAG+AGG - chr3_4:72895814-72895833 Msa0520320:five_prime_UTR 60.0%
GCTGCAGCTCCCTGACAAGG+GGG + chr3_4:72894321-72894340 None:intergenic 65.0%
GCAGCTGCAGCTCCCTGACA+AGG + chr3_4:72894324-72894343 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 72892777 72895868 72892777 ID=Msa0520320;Name=Msa0520320
chr3_4 mRNA 72892777 72895868 72892777 ID=Msa0520320-mRNA-1;Parent=Msa0520320;Name=Msa0520320-mRNA-1;_AED=0.13;_eAED=0.13;_QI=129|1|1|1|0.87|0.77|9|303|358
chr3_4 exon 72892777 72892792 72892777 ID=Msa0520320-mRNA-1:exon:20316;Parent=Msa0520320-mRNA-1
chr3_4 exon 72893001 72893480 72893001 ID=Msa0520320-mRNA-1:exon:20315;Parent=Msa0520320-mRNA-1
chr3_4 exon 72893599 72893657 72893599 ID=Msa0520320-mRNA-1:exon:20314;Parent=Msa0520320-mRNA-1
chr3_4 exon 72893800 72893883 72893800 ID=Msa0520320-mRNA-1:exon:20313;Parent=Msa0520320-mRNA-1
chr3_4 exon 72894028 72894138 72894028 ID=Msa0520320-mRNA-1:exon:20312;Parent=Msa0520320-mRNA-1
chr3_4 exon 72894216 72894315 72894216 ID=Msa0520320-mRNA-1:exon:20311;Parent=Msa0520320-mRNA-1
chr3_4 exon 72894483 72894707 72894483 ID=Msa0520320-mRNA-1:exon:20310;Parent=Msa0520320-mRNA-1
chr3_4 exon 72895347 72895455 72895347 ID=Msa0520320-mRNA-1:exon:20309;Parent=Msa0520320-mRNA-1
chr3_4 exon 72895544 72895868 72895544 ID=Msa0520320-mRNA-1:exon:20308;Parent=Msa0520320-mRNA-1
chr3_4 five_prime_UTR 72895740 72895868 72895740 ID=Msa0520320-mRNA-1:five_prime_utr;Parent=Msa0520320-mRNA-1
chr3_4 CDS 72895544 72895739 72895544 ID=Msa0520320-mRNA-1:cds;Parent=Msa0520320-mRNA-1
chr3_4 CDS 72895347 72895455 72895347 ID=Msa0520320-mRNA-1:cds;Parent=Msa0520320-mRNA-1
chr3_4 CDS 72894483 72894707 72894483 ID=Msa0520320-mRNA-1:cds;Parent=Msa0520320-mRNA-1
chr3_4 CDS 72894216 72894315 72894216 ID=Msa0520320-mRNA-1:cds;Parent=Msa0520320-mRNA-1
chr3_4 CDS 72894028 72894138 72894028 ID=Msa0520320-mRNA-1:cds;Parent=Msa0520320-mRNA-1
chr3_4 CDS 72893800 72893883 72893800 ID=Msa0520320-mRNA-1:cds;Parent=Msa0520320-mRNA-1
chr3_4 CDS 72893599 72893657 72893599 ID=Msa0520320-mRNA-1:cds;Parent=Msa0520320-mRNA-1
chr3_4 CDS 72893288 72893480 72893288 ID=Msa0520320-mRNA-1:cds;Parent=Msa0520320-mRNA-1
chr3_4 three_prime_UTR 72893001 72893287 72893001 ID=Msa0520320-mRNA-1:three_prime_utr;Parent=Msa0520320-mRNA-1
chr3_4 three_prime_UTR 72892777 72892792 72892777 ID=Msa0520320-mRNA-1:three_prime_utr;Parent=Msa0520320-mRNA-1
Gene Sequence

>Msa0520320

ATGGAAAAGATGGAAGAGATGATGCAGCTGCCTTACAACACCACCGTGAAGCTGATGCTTGGTTCACTCGAACGCAATTTGCTCCCTGATGCCGTCATCAGGAGACTCACACGTTTGCTTTTGTCAACTCGCCTTCGTTCTTCTTACAAGCCTTCTTCTGAACTTCAGCTTTCTGATCTTCTCCAATTTGCTCACTCTTTACAAGAGATGCCTATTGCTGTCAGTACTGATGTCCCAAAATCTCAACATTACGAATTACCTACCTCTTTCTTTAAGCTGGTTCTTGGAAACAACCTCAAATACAGTTCGTGTTATTTCTCTTCTGCCTCAAAGACATTGGAAGAGGCTGAAGAAGAAATGTTGAAACTGTATTGCGAGAGATCAAACCTGAAAGATGGTCATACAGTTCTTGATGTCGGATGCGGTTGGGGGTCACTGACTTTATACATTGCCAAGAATTACATCAGTTCCAGGGTTACAGGAATCTGCAATTCCACGACTCAAAAAGCTTTTATTGAGGAGAAATGCCGGGAGCTGCAGCTGCAAAATGTGGATATCATTGTTGCAGACATTAGTACATTTGAAATGGAAGCTTCTTATGACAGAATATTTTCCATAGAAATGTTTGAGCATATGAAGAACTATAAAGATCTTCTCAAGAAGATATCCAACTGGATGAAAGTGGATGGCCTTTTATTCGTTCATCATTTCTGCCACAAAGCATTTGCCTACCACTTTGAGGACAAAAATGAAGATGATTGGATTACAAGATACTTCTTTACCGGAGGAACTATGCCTGCAGCAAATCTACTTCTTTATTTCCAAGATGATGTTACTGTTGTCAACCATTGGCTGGTAAATGGGAAACACTACGCACAAACCAGCGAAGAGTGGCTCAAAAGAATGGATAAGAACAAGACTTTCATCAAGCCAATTATGGAATCAACATATGGCAAAGATTCAGCTACCAAATGGACTGTCTACTGGAGAACGTTTTTCATAGCTGTAGCAGAACTATTTGGATACAATAATGGTGAAGAATGGATGGTTGCACACTTTCTTTTGAAAAAGAAATAA

Protein sequence

>Msa0520320

MEKMEEMMQLPYNTTVKLMLGSLERNLLPDAVIRRLTRLLLSTRLRSSYKPSSELQLSDLLQFAHSLQEMPIAVSTDVPKSQHYELPTSFFKLVLGNNLKYSSCYFSSASKTLEEAEEEMLKLYCERSNLKDGHTVLDVGCGWGSLTLYIAKNYISSRVTGICNSTTQKAFIEEKCRELQLQNVDIIVADISTFEMEASYDRIFSIEMFEHMKNYKDLLKKISNWMKVDGLLFVHHFCHKAFAYHFEDKNEDDWITRYFFTGGTMPAANLLLYFQDDVTVVNHWLVNGKHYAQTSEEWLKRMDKNKTFIKPIMESTYGKDSATKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLLKKK*