AlfalfaGEDB | Msa0465940

M. sativa cultivar zhongmu-4 / Msa0465940

KEGG: K21374
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465940	XP_013461083.2	95.597	477	21	0	1	477	1	477	0.0	962

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465940	sp\|G3FIN9\|UGTK5_MANES	58.403	476	193	4	5	478	10	482	0.0	602

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465940	A0A396ITI9	95.597	477	21	0	1	477	1	477	0.0	962

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0465940	0.822317	2.526895e-53	-8.615850e-47
Msa0006070	Msa0465940	0.816917	4.318738e-52	-8.615850e-47
Msa0006110	Msa0465940	0.814290	1.661567e-51	-8.615850e-47
Msa0017510	Msa0465940	0.837086	6.395161e-57	-8.615850e-47
Msa0061380	Msa0465940	0.811102	8.279595e-51	-8.615850e-47
Msa0080090	Msa0465940	0.804104	2.534756e-49	-8.615850e-47
Msa0089630	Msa0465940	0.817444	3.286650e-52	-8.615850e-47
Msa0091210	Msa0465940	-0.800295	1.540929e-48	-8.615850e-47
Msa0105070	Msa0465940	0.803874	2.830389e-49	-8.615850e-47
Msa0115000	Msa0465940	0.802434	5.620546e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0465940	MtrunA17_Chr3g0118671	95.597	477	21	0	1	477	1	477	962
Msa0465940	MtrunA17_Chr3g0118771	81.342	477	89	0	3	479	18	494	834
Msa0465940	MtrunA17_Chr3g0118691	78.288	479	104	0	1	479	10	488	818
Msa0465940	MtrunA17_Chr3g0118711	78.992	476	100	0	3	478	10	485	816
Msa0465940	MtrunA17_Chr3g0118701	76.200	479	114	0	1	479	10	488	794
Msa0465940	MtrunA17_Chr3g0118751	77.871	479	77	2	1	479	1	450	779
Msa0465940	MtrunA17_Chr3g0118661	62.683	477	177	1	3	479	10	485	626
Msa0465940	MtrunA17_Chr5g0426431	53.503	471	213	5	6	474	12	478	545
Msa0465940	MtrunA17_Chr3g0092641	53.814	472	212	5	5	474	11	478	539
Msa0465940	MtrunA17_Chr3g0078841	50.104	479	235	3	2	478	6	482	520

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465940	AT1G22380.1	51.477	474	228	2	2	474	9	481	0.0	535
Msa0465940	AT1G22360.1	49.894	473	235	2	3	474	7	478	0.0	521
Msa0465940	AT1G22340.1	48.109	476	246	1	3	477	10	485	0.0	516
Msa0465940	AT1G22400.1	48.734	474	240	3	3	474	10	482	3.30e-180	514
Msa0465940	AT1G22370.2	50.317	473	228	3	3	474	10	476	2.18e-178	509
Msa0465940	AT1G22360.2	48.414	473	230	3	3	474	7	466	1.49e-174	499
Msa0465940	AT1G78270.1	47.182	479	249	4	3	479	10	486	3.10e-161	466
Msa0465940	AT1G22370.1	49.013	304	153	2	172	474	4	306	2.36e-101	306
Msa0465940	AT3G46660.1	34.801	477	274	13	1	470	6	452	2.56e-84	267
Msa0465940	AT5G59590.1	34.244	476	269	12	3	470	7	446	4.24e-83	264

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Find 101 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTTTGGTAAACTCTCT+TGG	0.416123	3_3:+66438621	Msa0465940:CDS
AACCCTAACATATATAGCAT+TGG	0.520257	3_3:+66441732	Msa0465940:CDS
AAGAAAGGCCAACAAATAGT+AGG	0.483470	3_3:-66442170	None:intergenic
AAGAACTTGTACAATGGTTG+TGG	0.513656	3_3:-66438376	None:intergenic
AATGAGACCAGATGTAGTAA+TGG	0.544388	3_3:+66441980	Msa0465940:CDS
AATGCAAATAACTGGAATAT+GGG	0.393531	3_3:-66438814	None:intergenic
ACAAGTTTAGATTGGATCTC+AGG	0.425213	3_3:+66441534	Msa0465940:CDS
ACAATTGAAACCATTTCTTC+AGG	0.342589	3_3:+66442143	Msa0465940:CDS
ACATGACCCTGTGCTGGGTA+TGG	0.576356	3_3:-66438519	None:intergenic
ACCACTTGAAAGAATTTGCA+TGG	0.503004	3_3:+66441922	Msa0465940:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGTTTGTGAATTATAGGC+TGG	-	chr3_3:66438404-66438423	None:intergenic	30.0%
TATGGTACAAATACAACATG+TGG	-	chr3_3:66438504-66438523	None:intergenic	30.0%
TGTGTTGCATCCTTATTAAA+AGG	-	chr3_3:66438708-66438727	None:intergenic	30.0%
ATGCAAATAACTGGAATATG+GGG	-	chr3_3:66438816-66438835	None:intergenic	30.0%
TCAGCAATAATGCAAATAAC+TGG	-	chr3_3:66438825-66438844	None:intergenic	30.0%
GTTATTTGCATTATTGCTGA+TGG	+	chr3_3:66438825-66438844	Msa0465940:CDS	30.0%
CCAATAAAATTCAGCTTGTA+TGG	-	chr3_3:66439081-66439100	None:intergenic	30.0%
AGCAAGTTGTAATTATGCTT+TGG	+	chr3_3:66439427-66439446	Msa0465940:intron	30.0%
TTGAGTTATACTCATTGGAT+TGG	-	chr3_3:66439468-66439487	None:intergenic	30.0%
ACATGAGCTTCAATTTGATT+TGG	-	chr3_3:66439694-66439713	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	66438360	66442699	66438360	ID=Msa0465940;Name=Msa0465940
chr3_3	mRNA	66438360	66442699	66438360	ID=Msa0465940-mRNA-1;Parent=Msa0465940;Name=Msa0465940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=129\|1\|1\|1\|1\|1\|2\|254\|479
chr3_3	exon	66438360	66438984	66438360	ID=Msa0465940-mRNA-1:exon:15047;Parent=Msa0465940-mRNA-1
chr3_3	exon	66441502	66442699	66441502	ID=Msa0465940-mRNA-1:exon:15048;Parent=Msa0465940-mRNA-1
chr3_3	five_prime_UTR	66438360	66438488	66438360	ID=Msa0465940-mRNA-1:five_prime_utr;Parent=Msa0465940-mRNA-1
chr3_3	CDS	66438489	66438984	66438489	ID=Msa0465940-mRNA-1:cds;Parent=Msa0465940-mRNA-1
chr3_3	CDS	66441502	66442445	66441502	ID=Msa0465940-mRNA-1:cds;Parent=Msa0465940-mRNA-1
chr3_3	three_prime_UTR	66442446	66442699	66442446	ID=Msa0465940-mRNA-1:three_prime_utr;Parent=Msa0465940-mRNA-1

Gene Sequence

>Msa0465940

ATGGACCAAAAGCCACATGTTGTATTTGTACCATACCCAGCACAGGGTCATGTTAATCCCTTAATGCAACTGGCTAAACTCCTACGTTGCAACGGTTTCCACATAACCTTTGTGAACACTGAATTCAACCACAAACGTTTGGTAAACTCTCTTGGACAAGACTATATGAATGGTCTATCAGATTTTCAATTTGAGACCATACCTGATGGTTTGCCTCCTTTTAATAAGGATGCAACACAAGATATTCCAACGTTGTGTGACGCAACTAGGAAAAATTGTTATGCTCCTTTCAAAGAGCTTATCAATAAGCTTAATACTTCATCACCCCATATTCCAGTTATTTGCATTATTGCTGATGGTCTTTTTGGTTTTGCTGGAAGAGTAGCAAGAGATTTGGGCATTCAAGAAATACAGTTTTGGACTGCTTCTGCTTGTGGCTTTGTGGGATATTTGCATTATGATGAGCTTGTTAAGAGAGGCATTCTTCCATTCCAAGATGAAAATTTTGTTTGCGATGGCACCTTGGAAACAAGTTTAGATTGGATCTCAGGAATGAAAGATATCAAATTAAAAGACCTTCCAAGCTTCATGAGAGTTACTGATTTAAATGATATTATGTTTGATTTCATGGGTTCTGAGGCACAAAACTGTTTGAGATCATCAACAATTATAATCAACACATTTGAAGAATTAGAAGATGAAGTGCTTGCCACCCTTAGGACCAAAAACCCTAACATATATAGCATTGGTCCACTTCACATGCTTGGTAGAAACTTTCCCAAAAAGGAACATGGTTTTAAGGCCAATGGTTCAAGTTTATGGAAAAGTGACCCAGAATGCACAAAATGGTTGAATAAATGGAAACCTAGCTCAGTTTTGTACGTTAATTATGGAAGTGTAACTGTTATGACAGATCACCACTTGAAAGAATTTGCATGGGGAATAGCAAATAGTAAGTTACCATTTCTATGGATAATGAGACCAGATGTAGTAATGGGTGAAGAAATTTCAACTTTGCCACAAGATTTTCTAGATGAAGTTAAGGATAGAGGATACATAACAAGTTGGTGCATGCAAGACCAAGTGCTTGCTCATCCATCAGTTGGGGTTTTTCTAACTCATTGCGGTTGGAATTCTACAATTGAAACCATTTCTTCAGGTGTTCCTACTATTTGTTGGCCTTTCTTTGCTGAGCAACAAACAAATTGTAGGTATTTATGCAACACTTGGAAAGTAGGAATGGAAATTAACAATGATGTTAAAAGAGAGGAGATAACAGAACTTGTACTAGAAATGATGAAAGGAGAAAAAGGAAGAGAAATGAAACAAAAGAGCTTAGAGTGGAAGAATAAAGCTAAAAAGGCTAATGATTTTGGAGGATCATCATACACTAATTTCCATAAGTTAATTGCAGAGGTTCTTCGTCACAATAATATTTAA

Protein sequence

>Msa0465940

MDQKPHVVFVPYPAQGHVNPLMQLAKLLRCNGFHITFVNTEFNHKRLVNSLGQDYMNGLSDFQFETIPDGLPPFNKDATQDIPTLCDATRKNCYAPFKELINKLNTSSPHIPVICIIADGLFGFAGRVARDLGIQEIQFWTASACGFVGYLHYDELVKRGILPFQDENFVCDGTLETSLDWISGMKDIKLKDLPSFMRVTDLNDIMFDFMGSEAQNCLRSSTIIINTFEELEDEVLATLRTKNPNIYSIGPLHMLGRNFPKKEHGFKANGSSLWKSDPECTKWLNKWKPSSVLYVNYGSVTVMTDHHLKEFAWGIANSKLPFLWIMRPDVVMGEEISTLPQDFLDEVKDRGYITSWCMQDQVLAHPSVGVFLTHCGWNSTIETISSGVPTICWPFFAEQQTNCRYLCNTWKVGMEINNDVKREEITELVLEMMKGEKGREMKQKSLEWKNKAKKANDFGGSSYTNFHKLIAEVLRHNNI*