AlfalfaGEDB | Msa0269080

M. sativa cultivar zhongmu-4 / Msa0269080

KEGG: K02707|K02713
GO: -
PFAM: PF00283.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0269080	AES88212.1	75.735	136	1	1	1	104	1	136	2.57e-61	193

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0269080	sp\|Q2PMR7\|PSBE_SOYBN	71.951	82	23	0	1	82	1	82	7.78e-34	115

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0269080	A0A6A5LQW0	72.527	91	18	1	1	84	1	91	7.76e-36	126

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001550	Msa0269080	0.805645	1.208080e-49	-8.615850e-47
Msa0002110	Msa0269080	0.867485	1.321727e-65	-8.615850e-47
Msa0002690	Msa0269080	0.849107	3.998816e-60	-8.615850e-47
Msa0002700	Msa0269080	0.842895	1.955349e-58	-8.615850e-47
Msa0003340	Msa0269080	0.826850	2.163679e-54	-8.615850e-47
Msa0004180	Msa0269080	0.870100	1.882330e-66	-8.615850e-47
Msa0007810	Msa0269080	0.838979	2.083654e-57	-8.615850e-47
Msa0011060	Msa0269080	0.819036	1.434010e-52	-8.615850e-47
Msa0011100	Msa0269080	0.823965	1.042382e-53	-8.615850e-47
Msa0011410	Msa0269080	0.855464	6.200434e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0269080	MtrunA17_CPg0492821	70.732	82	24	0	1	82	1	82	6.38e-34	112
Msa0269080	MtrunA17_Chr4g0016851	70.732	82	24	0	1	82	1	82	6.38e-34	112
Msa0269080	MtrunA17_Chr4g0015751	70.732	82	24	0	1	82	1	82	6.38e-34	112
Msa0269080	MtrunA17_Chr4g0017011	98.148	54	1	0	1	54	1	54	2.07e-33	111
Msa0269080	MtrunA17_Chr5g0423051	96.296	54	2	0	1	54	1	54	3.52e-32	107
Msa0269080	MtrunA17_Chr4g0016841	61.538	91	21	2	14	104	9	85	4.52e-31	105
Msa0269080	MtrunA17_Chr6g0451331	90.323	31	3	0	24	54	41	71	5.28e-14	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0269080	ATCG00580.1	70.732	82	24	0	1	82	1	82	1.19e-34	114
Msa0269080	ATCG00560.1	97.297	37	1	0	68	104	2	38	3.75e-19	73.9

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Find 27 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATAATCCAGTATCGAATAC+TGG	0.423687	2_2:+70503737	None:intergenic
AATCGTACCAGTCTCTACTG+GGG	0.711157	2_2:-70503338	Msa0269080:CDS
ATAACCAACCCGCAATGAAT+AGG	0.348030	2_2:+70503694	None:intergenic
ATACCCTCCCTATTCATTGC+GGG	0.391873	2_2:-70503702	Msa0269080:CDS
ATTCGGATTAGGTTTATCGT+TGG	0.512045	2_2:+70503409	None:intergenic
CAACCCGCAATGAATAGGGA+GGG	0.665638	2_2:+70503699	None:intergenic
CCAACCCGCAATGAATAGGG+AGG	0.678708	2_2:+70503698	None:intergenic
CCTCCCTATTCATTGCGGGT+TGG	0.536548	2_2:-70503698	Msa0269080:CDS
CTCGGCATGTCTGGAAGCAC+AGG	0.508926	2_2:-70503786	Msa0269080:exon
CTGTAAAATACTCGTTTGGA+CGG	0.550313	2_2:+70503631	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATTACCAGTATTCGATAC+TGG	-	chr2_2:70503340-70503359	Msa0269080:CDS	30.0%
CTTTCTGTAAAATACTCGTT+TGG	+	chr2_2:70503459-70503478	None:intergenic	30.0%
CAAGGAATTCCATTAATAAC+TGG	-	chr2_2:70503483-70503502	Msa0269080:intron	30.0%
GTTGTTCCAAAGAATCAAAA+CGG	+	chr2_2:70503509-70503528	None:intergenic	30.0%
AACCATCGTACTGTAAAAAT+GGG	+	chr2_2:70503588-70503607	None:intergenic	30.0%
TGTAAAATACTCGTTTGGAC+GGG	+	chr2_2:70503454-70503473	None:intergenic	35.0%
CTGTAAAATACTCGTTTGGA+CGG	+	chr2_2:70503455-70503474	None:intergenic	35.0%
TCAAAACGGCCAGTTATTAA+TGG	+	chr2_2:70503495-70503514	None:intergenic	35.0%
TCGTACTGTAAAAATGGGAT+AGG	+	chr2_2:70503583-70503602	None:intergenic	35.0%
CAACCATCGTACTGTAAAAA+TGG	+	chr2_2:70503589-70503608	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	70503286	70503819	70503286	ID=Msa0269080;Name=Msa0269080
chr2_2	mRNA	70503286	70503819	70503286	ID=Msa0269080-mRNA-1;Parent=Msa0269080;Name=Msa0269080-mRNA-1;_AED=0.22;_eAED=0.22;_QI=17\|0\|0\|1\|0\|0\|2\|0\|104
chr2_2	exon	70503642	70503819	70503642	ID=Msa0269080-mRNA-1:exon:22770;Parent=Msa0269080-mRNA-1
chr2_2	exon	70503286	70503436	70503286	ID=Msa0269080-mRNA-1:exon:22769;Parent=Msa0269080-mRNA-1
chr2_2	five_prime_UTR	70503803	70503819	70503803	ID=Msa0269080-mRNA-1:five_prime_utr;Parent=Msa0269080-mRNA-1
chr2_2	CDS	70503642	70503802	70503642	ID=Msa0269080-mRNA-1:cds;Parent=Msa0269080-mRNA-1
chr2_2	CDS	70503286	70503436	70503286	ID=Msa0269080-mRNA-1:cds;Parent=Msa0269080-mRNA-1

Gene Sequence	>Msa0269080 ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGGATTATTCATAGCATTACTATACCCTCCCTATTCATTGCGGGTTGGTTATTTGTCAGCACGGGTTTAGCTTACGATGTATTTGGAAGTCCCCGTCCAAACGATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTACGACACAATCAAACCCAAATGAACAAAATGTTGAATTGAATCGTACCAGTCTCTACTGGGGTTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCAAATTATTTCTTCAAT
Protein sequence	>Msa0269080 MSGSTGERSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNDSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN