AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0105140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105140 MtrunA17_Chr1g0159921 99.216 255 2 0 200 454 277 531 0.0 547
Msa0105140 MtrunA17_Chr1g0159921 99.000 200 2 0 1 200 1 200 6.18e-132 391
Msa0105140 MtrunA17_Chr3g0136771 25.000 284 164 15 200 454 166 429 8.65e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105140 AT1G44446.4 82.072 251 45 0 200 450 183 433 2.47e-154 445
Msa0105140 AT1G44446.4 66.981 106 35 0 95 200 1 106 1.78e-35 136
Msa0105140 AT1G44446.1 82.072 251 45 0 200 450 285 535 1.84e-153 446
Msa0105140 AT1G44446.1 65.366 205 64 2 3 200 4 208 7.96e-77 249
Msa0105140 AT1G44446.2 83.920 199 32 0 200 398 285 483 7.05e-119 357
Msa0105140 AT1G44446.2 65.385 208 64 3 1 200 1 208 2.90e-77 250
Msa0105140 AT1G44446.3 65.385 208 64 3 1 200 1 208 3.83e-78 250
Msa0105140 AT1G44446.3 80.392 102 20 0 200 301 285 386 2.51e-47 169
Msa0105140 AT2G24820.1 24.632 272 162 12 200 443 152 408 1.73e-11 66.6

Find 135 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACAACAATCCCCTTTA+AGG 0.138946 1_3:+13404041 None:intergenic
CAGGGTTTGAAAGGTAAATT+TGG 0.219218 1_3:-13407905 Msa0105140:CDS
ACAGTGTTAAATCCAATTTA+TGG 0.235520 1_3:-13404099 Msa0105140:three_prime_UTR
GCTTTGTCCTTTCAATTTCC+CGG 0.258774 1_3:+13405182 None:intergenic
CTCCATAGATGTTCCATAAA+AGG 0.264680 1_3:+13405042 None:intergenic
CAGGTGTGTTGAACATTCTT+TGG 0.268435 1_3:+13405158 None:intergenic
TGGTATAACCACACCCTTAA+AGG 0.278106 1_3:-13404055 Msa0105140:three_prime_UTR
GGTTGAACACGGATTACTTT+TGG 0.283837 1_3:-13405935 Msa0105140:CDS
CATCTGGTCTGCAAGGATAT+TGG 0.286825 1_3:-13405275 Msa0105140:CDS
CTTTATTCATTCTCTCTTGT+TGG 0.291005 1_3:+13404472 None:intergenic
CCTTCTTTACTACCTCCTTC+TGG 0.291205 1_3:-13406127 Msa0105140:CDS
CTTAGTGGCGCTTTAGATCT+TGG 0.291618 1_3:+13407815 None:intergenic
AAGATGGTGAAACCATAAAT+TGG 0.296753 1_3:+13404087 None:intergenic
TATGGTTTCACCATCTTAGA+TGG 0.312209 1_3:-13404081 Msa0105140:three_prime_UTR
GTCGATTGGCACCATGAAAA+AGG 0.314224 1_3:-13407148 Msa0105140:CDS
AATGTCGAAGTATGAGTAAA+AGG 0.321362 1_3:+13405886 None:intergenic
AAACTCTTGCTTCAGATATA+TGG 0.329301 1_3:+13406984 None:intergenic
ATCTGGTCTGCAAGGATATT+GGG 0.329604 1_3:-13405274 Msa0105140:CDS
AGCAAGAGTTTCTACTGCTT+TGG 0.334343 1_3:-13406972 Msa0105140:CDS
ACATTTAGCATTCGAGTAGA+TGG 0.343874 1_3:+13406232 None:intergenic
AACCTTGCATTAGAACTTCA+TGG 0.356961 1_3:-13404244 Msa0105140:three_prime_UTR
AAAGGATCTAGCTGGGTTGC+AGG 0.360380 1_3:-13407130 Msa0105140:CDS
ACAGATTGTCATGGAACTTC+CGG 0.364114 1_3:-13405956 Msa0105140:intron
ACACTGTACACAAATTTAAG+AGG 0.365108 1_3:+13404115 None:intergenic
ACTAAGTAAAGGAAAAGTTT+TGG 0.365161 1_3:-13407798 Msa0105140:CDS
TTTGGAGTGTTTGCTGTGTT+TGG 0.368010 1_3:-13407887 Msa0105140:CDS
ATGCTTCTTAAGATCCAATA+AGG 0.383649 1_3:-13404298 Msa0105140:three_prime_UTR
AAGAAAAGCTTAAATGTATC+AGG 0.384915 1_3:-13406815 Msa0105140:intron
ACTCGCTTACATGGAAGAAT+TGG 0.386034 1_3:-13406945 Msa0105140:CDS
CATACAACAATCCCCTTTAA+GGG 0.387303 1_3:+13404042 None:intergenic
ATCATGCCTAGCTACTTCTA+TGG 0.388459 1_3:+13407763 None:intergenic
AAGAAGGGATGATCTGGATT+TGG 0.390925 1_3:-13406180 Msa0105140:CDS
GGATCCCTATCCGATTGATA+TGG 0.397893 1_3:-13405253 Msa0105140:CDS
GGTATAACCACACCCTTAAA+GGG 0.399225 1_3:-13404054 Msa0105140:three_prime_UTR
CCAAGCTTGTCATAGGTAAC+TGG 0.399584 1_3:+13404429 None:intergenic
CTTCCAAGCTTGACACCAAA+AGG 0.403732 1_3:-13408900 Msa0105140:CDS
TGAATAAAGGTGCAAATGTA+TGG 0.404916 1_3:-13404458 Msa0105140:CDS
GGAGTTTCGACCACCTTGTA+TGG 0.406336 1_3:-13405232 Msa0105140:CDS
TTGAGAAAGAAGGGATGATC+TGG 0.411706 1_3:-13406186 Msa0105140:CDS
TTGGAGGGATGCATTGGAAA+AGG 0.412803 1_3:-13404391 Msa0105140:CDS
CTAAGGGATGGAGTGTTCCT+AGG 0.413929 1_3:-13405861 Msa0105140:intron
CCTTACTCCAAGCTTGTCAT+AGG 0.414297 1_3:+13404422 None:intergenic
AGCAGTAGCTATGGCATTCA+TGG 0.421129 1_3:+13408954 None:intergenic
TTGGAGTAAGGTATAGGCTT+TGG 0.424370 1_3:-13404410 Msa0105140:CDS
AAGAAAGAGAGGTACCCTTT+TGG 0.427629 1_3:+13408885 None:intergenic
GTATGGTTCTATCAACCATT+GGG 0.429913 1_3:-13405215 Msa0105140:CDS
TTGGAAGTTCTACAAAAGAT+AGG 0.437166 1_3:+13408916 None:intergenic
TCATATCAACACAACATTCC+CGG 0.445027 1_3:+13404196 None:intergenic
TTAATTATTGTGTGTGTTGA+AGG 0.445378 1_3:+13404353 None:intergenic
ACAAGCTTGGAGTAAGGTAT+AGG 0.446291 1_3:-13404416 Msa0105140:CDS
AAAAGTAATCCGTGTTCAAC+CGG 0.447132 1_3:+13405937 None:intergenic
CTTTGTCCTTTCAATTTCCC+GGG 0.450716 1_3:+13405183 None:intergenic
CCAGAAGGAGGTAGTAAAGA+AGG 0.468373 1_3:+13406127 None:intergenic
TAAAAGGCATATGCTTAAGA+AGG 0.468665 1_3:+13405058 None:intergenic
CAACAAGAGAGAATGAATAA+AGG 0.472000 1_3:-13404471 Msa0105140:CDS
ATGTCGAAGTATGAGTAAAA+GGG 0.472157 1_3:+13405887 None:intergenic
ATGATATTGAGTACTTAGAT+TGG 0.472398 1_3:-13407745 Msa0105140:CDS
TGTATGGTTCTATCAACCAT+TGG 0.476351 1_3:-13405216 Msa0105140:CDS
CATCATGCTCCTCCATGAAA+AGG 0.476387 1_3:-13407699 Msa0105140:intron
TAAAGCAGAAGCAGTAGCTA+TGG 0.478061 1_3:+13408945 None:intergenic
GGGTGCAATATTTGATGTAC+AGG 0.479113 1_3:-13407840 Msa0105140:CDS
ATCCCTTCTTTCTCAAAACA+TGG 0.488856 1_3:+13406193 None:intergenic
AACAATCCCCTTTAAGGGTG+TGG 0.490466 1_3:+13404047 None:intergenic
TAGGCTTTGGAGGGATGCAT+TGG 0.491835 1_3:-13404397 Msa0105140:CDS
GAGTAAGGTATAGGCTTTGG+AGG 0.496119 1_3:-13404407 Msa0105140:CDS
ACCATTGGGATTTCGAAGCC+CGG 0.501562 1_3:-13405201 Msa0105140:CDS
TTTGGATAAACTCGCTTACA+TGG 0.502971 1_3:-13406954 Msa0105140:CDS
TGGAGGGATGCATTGGAAAA+GGG 0.507380 1_3:-13404390 Msa0105140:CDS
TTCACCATCTTAGATGGTGG+TGG 0.507584 1_3:-13404075 Msa0105140:three_prime_UTR
CTATGAAAGTGATGAGAAGA+AGG 0.513839 1_3:+13408977 None:intergenic
ACAGATTTATCAGAAGTACT+TGG 0.516953 1_3:+13406863 None:intergenic
GATTGTAACTCAAACCAGTC+AGG 0.519297 1_3:+13403987 None:intergenic
AAACTCCATATCAATCGGAT+AGG 0.523237 1_3:+13405248 None:intergenic
TCATACTTCGACATTTGCTA+AGG 0.523457 1_3:-13405878 Msa0105140:CDS
ATCAACCTAGTGAAGCTACC+CGG 0.523575 1_3:-13404215 Msa0105140:three_prime_UTR
AGCAGACATGTAGTTGGTGC+AGG 0.524754 1_3:+13405139 None:intergenic
ATTGCTATATAGAATGTCAC+TGG 0.528652 1_3:-13405091 Msa0105140:CDS
GGTCGAAACTCCATATCAAT+CGG 0.530169 1_3:+13405243 None:intergenic
GTTGATTAAGAATTCCTGAC+TGG 0.530223 1_3:-13404001 Msa0105140:three_prime_UTR
AAGAAGGAAGTGATGCTGCT+GGG 0.530413 1_3:+13406143 None:intergenic
TTTCACAAAACAGATTGTCA+TGG 0.531019 1_3:-13405965 Msa0105140:intron
TCTAAAGCGCCACTAAGTAA+AGG 0.531979 1_3:-13407809 Msa0105140:CDS
TCGAAGCCCGGGAAATTGAA+AGG 0.535602 1_3:-13405189 Msa0105140:CDS
CATTCCCGGGTAGCTTCACT+AGG 0.537575 1_3:+13404210 None:intergenic
AGTACTTAGATTGGCGAGCT+CGG 0.538321 1_3:-13407736 Msa0105140:CDS
AAAGAAGGAAGTGATGCTGC+TGG 0.539768 1_3:+13406142 None:intergenic
CCTATGACAAGCTTGGAGTA+AGG 0.541938 1_3:-13404422 Msa0105140:CDS
GGTTTCACCATCTTAGATGG+TGG 0.543297 1_3:-13404078 Msa0105140:three_prime_UTR
CCAGTTACCTATGACAAGCT+TGG 0.543997 1_3:-13404429 Msa0105140:CDS
AGGGTAAGCAGACATGTAGT+TGG 0.544078 1_3:+13405133 None:intergenic
CCATTGGGATTTCGAAGCCC+GGG 0.544164 1_3:-13405200 Msa0105140:CDS
TGGAAGAATTGGTAAATGAC+AGG 0.544909 1_3:-13406934 Msa0105140:CDS
GGGATGATCTGGATTTGGCC+TGG 0.548326 1_3:-13406175 Msa0105140:CDS
CATACTTCGACATTTGCTAA+GGG 0.548563 1_3:-13405877 Msa0105140:CDS
CATATCAACACAACATTCCC+GGG 0.548627 1_3:+13404197 None:intergenic
AACTCCATATCAATCGGATA+GGG 0.548896 1_3:+13405249 None:intergenic
CCCGGGCTTCGAAATCCCAA+TGG 0.553272 1_3:+13405200 None:intergenic
CTTCGACATTTGCTAAGGGA+TGG 0.553640 1_3:-13405873 Msa0105140:CDS
AAAAGGCATATGCTTAAGAA+GGG 0.554581 1_3:+13405059 None:intergenic
ATCAGAAGTACTTGGAGAAG+AGG 0.554772 1_3:+13406871 None:intergenic
CTGTACATACTGAAAGAAGA+AGG 0.555644 1_3:-13406844 Msa0105140:CDS
GCTCGTGAATTCAAGTCGAT+TGG 0.558329 1_3:-13407162 Msa0105140:CDS
ATTAGCAGAAGCACACAGAC+AGG 0.563331 1_3:-13407103 Msa0105140:intron
TATACCACCACCATCTAAGA+TGG 0.570781 1_3:+13404071 None:intergenic
GAGGATCTACGGCTAGTAGT+TGG 0.571790 1_3:-13404495 Msa0105140:CDS
AGAAGGAAGTGATGCTGCTG+GGG 0.573018 1_3:+13406144 None:intergenic
GGCTGGGAATATACGACAGA+CGG 0.577816 1_3:-13406271 Msa0105140:CDS
TTCCAAGCTTGACACCAAAA+GGG 0.583881 1_3:-13408899 Msa0105140:intron
AGCAGACAAGAAAAGTGCGT+GGG 0.586221 1_3:-13407861 Msa0105140:CDS
TTCAAGCCATAGAAGTAGCT+AGG 0.586372 1_3:-13407769 Msa0105140:CDS
TATCCTTGCAGACCAGATGC+CGG 0.588286 1_3:+13405279 None:intergenic
ACTTATTAAATACCTCGGCA+TGG 0.591232 1_3:+13406095 None:intergenic
AGCCATGAAGTTCTAATGCA+AGG 0.595362 1_3:+13404242 None:intergenic
TCAACCTAGTGAAGCTACCC+GGG 0.600321 1_3:-13404214 Msa0105140:three_prime_UTR
GGGCGTGCGCAAGATCCAAA+AGG 0.603628 1_3:+13405908 None:intergenic
GACTTGAATTCACGAGCTAG+AGG 0.604846 1_3:+13407168 None:intergenic
ATGGAACTTCCGGTTGAACA+CGG 0.610594 1_3:-13405946 Msa0105140:CDS
ACACCGGCATCTGGTCTGCA+AGG 0.613320 1_3:-13405282 Msa0105140:CDS
TAATTATTGTGTGTGTTGAA+GGG 0.617559 1_3:+13404354 None:intergenic
TGTTCCTTTGTAGAATGACA+AGG 0.617585 1_3:-13404170 Msa0105140:three_prime_UTR
TGTCGAAGTATGAGTAAAAG+GGG 0.625361 1_3:+13405888 None:intergenic
ACTTGGAGAAGAGGACGTCT+CGG 0.627193 1_3:+13406880 None:intergenic
ATGGTTGATAGAACCATACA+AGG 0.639943 1_3:+13405219 None:intergenic
AGTAAGGTATAGGCTTTGGA+GGG 0.643282 1_3:-13404406 Msa0105140:CDS
AAAGGCATATGCTTAAGAAG+GGG 0.645865 1_3:+13405060 None:intergenic
TGGATTTATAGTCCATGCCG+AGG 0.645907 1_3:-13406107 Msa0105140:intron
GCATGGACTATAAATCCAGA+AGG 0.652893 1_3:+13406112 None:intergenic
GTATAACCACACCCTTAAAG+GGG 0.658662 1_3:-13404053 Msa0105140:three_prime_UTR
GAAGGAAGTGATGCTGCTGG+GGG 0.661858 1_3:+13406145 None:intergenic
ACAACCTTGTCATTCTACAA+AGG 0.662518 1_3:+13404166 None:intergenic
TGGACTATAAATCCAGAAGG+AGG 0.679360 1_3:+13406115 None:intergenic
AAGCAGACAAGAAAAGTGCG+TGG 0.679985 1_3:-13407862 Msa0105140:CDS
AATGACAAGGTTGTACTCTG+AGG 0.680999 1_3:-13404157 Msa0105140:three_prime_UTR
GCAGACAAGAAAAGTGCGTG+GGG 0.696719 1_3:-13407860 Msa0105140:CDS
GTTGATAGAACCATACAAGG+TGG 0.758266 1_3:+13405222 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATCTAAATTTAATAG+CGG + chr1_3:13404617-13404636 None:intergenic 10.0%
!! ATTAAGTTTAAATTTAACAA+TGG + chr1_3:13404942-13404961 None:intergenic 10.0%
!! TATAAATTTAGTCACTATTT+AGG - chr1_3:13404364-13404383 Msa0105140:CDS 15.0%
!! TTATGAAATGATAGATTTAT+AGG - chr1_3:13407645-13407664 Msa0105140:intron 15.0%
!!! TATCATACATTGTTTCTTTT+AGG - chr1_3:13404569-13404588 Msa0105140:intron 20.0%
!!! GTTTCTTTTAGGTTTTTAAT+AGG - chr1_3:13404580-13404599 Msa0105140:intron 20.0%
!!! TTTATGTTTTTTGTGTAAAC+TGG - chr1_3:13404639-13404658 Msa0105140:intron 20.0%
!!! TTCTTTAGCTTATACTTTTT+TGG - chr1_3:13405057-13405076 Msa0105140:CDS 20.0%
!!! TCTTTAGCTTATACTTTTTT+GGG - chr1_3:13405058-13405077 Msa0105140:CDS 20.0%
!! TGATTATTAAGATAAGCAAA+TGG + chr1_3:13405775-13405794 None:intergenic 20.0%
!! TCTTAATAATCAGAAACTAT+TGG - chr1_3:13405783-13405802 Msa0105140:intron 20.0%
!! AGAAATTCTTTAAATTAGGA+TGG + chr1_3:13406223-13406242 None:intergenic 20.0%
!! ATCCTAATTTAAAGAATTTC+TGG - chr1_3:13406222-13406241 Msa0105140:CDS 20.0%
!! TACCAGAAATTCTTTAAATT+AGG + chr1_3:13406227-13406246 None:intergenic 20.0%
!! ACTATACTTATTAAATACCT+CGG + chr1_3:13406910-13406929 None:intergenic 20.0%
!! AAAAAAGAAGATAAAAGTCA+TGG - chr1_3:13406992-13407011 Msa0105140:intron 20.0%
!! TTGAATCATATCACTTATAA+GGG + chr1_3:13407177-13407196 None:intergenic 20.0%
!! ATTGAATCATATCACTTATA+AGG + chr1_3:13407178-13407197 None:intergenic 20.0%
!! TTCATGTATCATAATAACTT+GGG - chr1_3:13407309-13407328 Msa0105140:intron 20.0%
!! TCAAATAAGCAAATTAAAAC+AGG + chr1_3:13407336-13407355 None:intergenic 20.0%
!! TGTTTAAATTGATGAGTATA+TGG - chr1_3:13408128-13408147 Msa0105140:intron 20.0%
!!! ATTTTTCTGAAATCAAGTTA+TGG + chr1_3:13408315-13408334 None:intergenic 20.0%
!! AAAGAGAAAAATATCCTTAT+TGG + chr1_3:13408716-13408735 None:intergenic 20.0%
!! TTCAAACTCGAATTCTAAAA+TGG + chr1_3:13404506-13404525 None:intergenic 25.0%
!! AATATTATGTCCTTTTACTC+TGG - chr1_3:13404811-13404830 Msa0105140:intron 25.0%
! AAACCATACTCTTTCATATA+TGG + chr1_3:13405033-13405052 None:intergenic 25.0%
!! AAAACTTTTCCTTTACTTAG+TGG + chr1_3:13405200-13405219 None:intergenic 25.0%
!! ACTAAGTAAAGGAAAAGTTT+TGG - chr1_3:13405199-13405218 Msa0105140:CDS 25.0%
! ATGATATTGAGTACTTAGAT+TGG - chr1_3:13405252-13405271 Msa0105140:CDS 25.0%
!! GGTACTATATAACTTTTGAT+TGG - chr1_3:13405421-13405440 Msa0105140:intron 25.0%
! TCAATTCAAACAAACATAGA+TGG + chr1_3:13405450-13405469 None:intergenic 25.0%
! TATTAAGATAAGCAAATGGT+GGG + chr1_3:13405771-13405790 None:intergenic 25.0%
! TTATTAAGATAAGCAAATGG+TGG + chr1_3:13405772-13405791 None:intergenic 25.0%
! ATAAGTTAATGAATTACTGC+AGG - chr1_3:13405989-13406008 Msa0105140:intron 25.0%
!! GATACATTTAAGCTTTTCTT+CGG + chr1_3:13406182-13406201 None:intergenic 25.0%
! AAGAAAAGCTTAAATGTATC+AGG - chr1_3:13406182-13406201 Msa0105140:CDS 25.0%
! CAAAAAATGGTATATTTGCA+AGG + chr1_3:13406348-13406367 None:intergenic 25.0%
! AAAGGACTAAAAGCAAAAAA+TGG + chr1_3:13406361-13406380 None:intergenic 25.0%
! AGACGACAAATATCTTTAAA+AGG + chr1_3:13406379-13406398 None:intergenic 25.0%
! TCTCATAGAAATAAATCTGT+TGG + chr1_3:13406673-13406692 None:intergenic 25.0%
! TCAATATGCGAAAATGAAAT+TGG - chr1_3:13407193-13407212 Msa0105140:intron 25.0%
! GTTCATGTATCATAATAACT+TGG - chr1_3:13407308-13407327 Msa0105140:intron 25.0%
! TCATGTATCATAATAACTTG+GGG - chr1_3:13407310-13407329 Msa0105140:intron 25.0%
! AATAAGCAGAAAACAACTTA+TGG + chr1_3:13407428-13407447 None:intergenic 25.0%
!!! CTTGTTTTATCTTTTGAAGA+GGG + chr1_3:13407886-13407905 None:intergenic 25.0%
!!! TCTTGTTTTATCTTTTGAAG+AGG + chr1_3:13407887-13407906 None:intergenic 25.0%
! TTGTGAATTGACATCAAAAA+GGG + chr1_3:13408012-13408031 None:intergenic 25.0%
! ATTGTGAATTGACATCAAAA+AGG + chr1_3:13408013-13408032 None:intergenic 25.0%
!! CTTCAAAAGGAACAAATTTT+GGG - chr1_3:13408078-13408097 Msa0105140:intron 25.0%
!!! GAACAAATTTTGGGTATTTA+TGG - chr1_3:13408087-13408106 Msa0105140:intron 25.0%
! GATTATTAACTACTCAACAT+TGG - chr1_3:13408250-13408269 Msa0105140:intron 25.0%
! CAAGAAAGATTTATCTTAAC+AGG + chr1_3:13408385-13408404 None:intergenic 25.0%
!!! ATCTTTCTTGTGTTTGTTTT+TGG - chr1_3:13408395-13408414 Msa0105140:intron 25.0%
! TGTTGATATTTCCATACTTT+AGG - chr1_3:13408471-13408490 Msa0105140:intron 25.0%
! TAATTATTGTGTGTGTTGAA+GGG + chr1_3:13408646-13408665 None:intergenic 25.0%
! TTAATTATTGTGTGTGTTGA+AGG + chr1_3:13408647-13408666 None:intergenic 25.0%
! ACAGTGTTAAATCCAATTTA+TGG - chr1_3:13408898-13408917 Msa0105140:intron 25.0%
TTGGAAGTTCTACAAAAGAT+AGG + chr1_3:13404084-13404103 None:intergenic 30.0%
!!! GATTAGTTGCTTGTTTTGTA+AGG - chr1_3:13404178-13404197 Msa0105140:three_prime_UTR 30.0%
!! GTAAACTTAGCTTTTAGTCT+TGG - chr1_3:13404276-13404295 Msa0105140:three_prime_UTR 30.0%
!! TGACTTTAAGTTGACTTGTA+AGG - chr1_3:13404312-13404331 Msa0105140:three_prime_UTR 30.0%
!! TTAAGTTGACTTGTAAGGTA+AGG - chr1_3:13404317-13404336 Msa0105140:three_prime_UTR 30.0%
!! TAAGTTGACTTGTAAGGTAA+GGG - chr1_3:13404318-13404337 Msa0105140:three_prime_UTR 30.0%
! CAATTGATCTAAGATAGGTT+CGG - chr1_3:13404477-13404496 Msa0105140:CDS 30.0%
TCTAAATTTAATAGCGGCAT+AGG + chr1_3:13404611-13404630 None:intergenic 30.0%
! GAACTTAGAGAAACGAATTT+TGG - chr1_3:13404768-13404787 Msa0105140:intron 30.0%
! TAAAAGTACACCAGAGTAAA+AGG + chr1_3:13404824-13404843 None:intergenic 30.0%
ATACTCTTTCATATATGGAC+CGG + chr1_3:13405028-13405047 None:intergenic 30.0%
! AATTAGCTGAAACCTTTTCA+TGG + chr1_3:13405313-13405332 None:intergenic 30.0%
GACATATTTGAGCTTATCTA+TGG - chr1_3:13405468-13405487 Msa0105140:intron 30.0%
CTTATTTCCATAAACTCTCT+AGG - chr1_3:13405564-13405583 Msa0105140:intron 30.0%
ATATAGGGAGAATACAACAA+CGG + chr1_3:13405734-13405753 None:intergenic 30.0%
GATGCTTTATAGCACATATA+GGG + chr1_3:13405749-13405768 None:intergenic 30.0%
TAATCAGAAACTATTGGTGT+AGG - chr1_3:13405789-13405808 Msa0105140:intron 30.0%
! CAAATACGAATTTGAAGCTT+TGG + chr1_3:13405955-13405974 None:intergenic 30.0%
AAACTCTTGCTTCAGATATA+TGG + chr1_3:13406016-13406035 None:intergenic 30.0%
!! ACAGATTTATCAGAAGTACT+TGG + chr1_3:13406137-13406156 None:intergenic 30.0%
CAGAAACTGAAATTTCCTAA+TGG - chr1_3:13406693-13406712 Msa0105140:intron 30.0%
AACTGAAATTTCCTAATGGT+TGG - chr1_3:13406697-13406716 Msa0105140:intron 30.0%
!!! ATTCCATGTTTTGAGAAAGA+AGG - chr1_3:13406801-13406820 Msa0105140:intron 30.0%
!!! TTCCATGTTTTGAGAAAGAA+GGG - chr1_3:13406802-13406821 Msa0105140:intron 30.0%
TAAGTATAGTCTGTCCTAAT+AGG - chr1_3:13406920-13406939 Msa0105140:CDS 30.0%
CATAGCTTAGAATACCTATT+AGG + chr1_3:13406937-13406956 None:intergenic 30.0%
! TCTGTTTTGTGAAAAGATAC+CGG + chr1_3:13407026-13407045 None:intergenic 30.0%
TTTCACAAAACAGATTGTCA+TGG - chr1_3:13407032-13407051 Msa0105140:intron 30.0%
!! ATTACTTTTGGACAACCTTT+TGG - chr1_3:13407074-13407093 Msa0105140:intron 30.0%
ATGTCGAAGTATGAGTAAAA+GGG + chr1_3:13407113-13407132 None:intergenic 30.0%
AATGTCGAAGTATGAGTAAA+AGG + chr1_3:13407114-13407133 None:intergenic 30.0%
! GAAGTCTTTTTCTTTTGACA+AGG - chr1_3:13407255-13407274 Msa0105140:intron 30.0%
CTTATTTGAGCTTATTTACC+TGG - chr1_3:13407347-13407366 Msa0105140:intron 30.0%
! ATGATATGCTTTTATGATGC+AGG - chr1_3:13407540-13407559 Msa0105140:intron 30.0%
!!! CTTTGTGAATTTTTTGACAC+CGG - chr1_3:13407699-13407718 Msa0105140:intron 30.0%
ATTGCTATATAGAATGTCAC+TGG - chr1_3:13407906-13407925 Msa0105140:intron 30.0%
! AAAAGGCATATGCTTAAGAA+GGG + chr1_3:13407941-13407960 None:intergenic 30.0%
! TAAAAGGCATATGCTTAAGA+AGG + chr1_3:13407942-13407961 None:intergenic 30.0%
! TCTTAAGCATATGCCTTTTA+TGG - chr1_3:13407942-13407961 Msa0105140:intron 30.0%
!!! TTTTGAAGCGTAACTCATTT+TGG + chr1_3:13408066-13408085 None:intergenic 30.0%
AAAATGAGTTACGCTTCAAA+AGG - chr1_3:13408065-13408084 Msa0105140:intron 30.0%
! GCTTCAAAAGGAACAAATTT+TGG - chr1_3:13408077-13408096 Msa0105140:intron 30.0%
! TATCTGATTTTCTAACCACT+CGG + chr1_3:13408174-13408193 None:intergenic 30.0%
AATCAGATACCATAAGAAAG+TGG - chr1_3:13408185-13408204 Msa0105140:intron 30.0%
ATTCATCATATGTGCCTAAT+TGG - chr1_3:13408215-13408234 Msa0105140:intron 30.0%
GCACATATGATGAATAGTTA+TGG + chr1_3:13408293-13408312 None:intergenic 30.0%
! CTCGTTTAAAACCTAAAGTA+TGG + chr1_3:13408485-13408504 None:intergenic 30.0%
!!! CATACTTTAGGTTTTAAACG+AGG - chr1_3:13408483-13408502 Msa0105140:intron 30.0%
CTTTATTCATTCTCTCTTGT+TGG + chr1_3:13408528-13408547 None:intergenic 30.0%
CAACAAGAGAGAATGAATAA+AGG - chr1_3:13408526-13408545 Msa0105140:intron 30.0%
! TGAATAAAGGTGCAAATGTA+TGG - chr1_3:13408539-13408558 Msa0105140:intron 30.0%
ATGCTTCTTAAGATCCAATA+AGG - chr1_3:13408699-13408718 Msa0105140:intron 30.0%
ACACTGTACACAAATTTAAG+AGG + chr1_3:13408885-13408904 None:intergenic 30.0%
AAGATGGTGAAACCATAAAT+TGG + chr1_3:13408913-13408932 None:intergenic 30.0%
CTATGAAAGTGATGAGAAGA+AGG + chr1_3:13404023-13404042 None:intergenic 35.0%
AGAAGAAGAAGAAGAAAGAG+AGG + chr1_3:13404126-13404145 None:intergenic 35.0%
! TGGCTCAATTGATCTAAGAT+AGG - chr1_3:13404472-13404491 Msa0105140:CDS 35.0%
TGAACATAACTCGACAAAGT+TGG - chr1_3:13404522-13404541 Msa0105140:intron 35.0%
! TGACAACTTGTCATCCATTT+TGG + chr1_3:13404708-13404727 None:intergenic 35.0%
AACACTTCGTACAAAACTGT+AGG + chr1_3:13404896-13404915 None:intergenic 35.0%
AAGAAAGTTTCTCCTGTGTA+GGG - chr1_3:13404992-13405011 Msa0105140:intron 35.0%
GGTCCATATATGAAAGAGTA+TGG - chr1_3:13405027-13405046 Msa0105140:CDS 35.0%
!!! GCTTATACTTTTTTGGGTTG+TGG - chr1_3:13405064-13405083 Msa0105140:CDS 35.0%
!!! TTTTTGGGTTGTGGATTTTC+AGG - chr1_3:13405073-13405092 Msa0105140:CDS 35.0%
!!! TTTTGGGTTGTGGATTTTCA+GGG - chr1_3:13405074-13405093 Msa0105140:CDS 35.0%
CAGGGTTTGAAAGGTAAATT+TGG - chr1_3:13405092-13405111 Msa0105140:CDS 35.0%
GTTGGATCAAATTAGAGACT+TGG - chr1_3:13405400-13405419 Msa0105140:intron 35.0%
AATAAGCTGAAAGCAGCTTA+TGG + chr1_3:13405550-13405569 None:intergenic 35.0%
AAGCTATCCTAGAGAGTTTA+TGG + chr1_3:13405574-13405593 None:intergenic 35.0%
AAGCTGTTTATCCAAACAAG+TGG - chr1_3:13405696-13405715 Msa0105140:intron 35.0%
AGCTGTTTATCCAAACAAGT+GGG - chr1_3:13405697-13405716 Msa0105140:intron 35.0%
CAAACTTTATCCCACTTGTT+TGG + chr1_3:13405710-13405729 None:intergenic 35.0%
CAAACAAGTGGGATAAAGTT+TGG - chr1_3:13405708-13405727 Msa0105140:intron 35.0%
GGATGCTTTATAGCACATAT+AGG + chr1_3:13405750-13405769 None:intergenic 35.0%
! ATACGAATTTGAAGCTTTGG+TGG + chr1_3:13405952-13405971 None:intergenic 35.0%
TTTGGATAAACTCGCTTACA+TGG - chr1_3:13406043-13406062 Msa0105140:intron 35.0%
TGGAAGAATTGGTAAATGAC+AGG - chr1_3:13406063-13406082 Msa0105140:intron 35.0%
CTGTACATACTGAAAGAAGA+AGG - chr1_3:13406153-13406172 Msa0105140:CDS 35.0%
TGACTTAAAGGATGATTCCA+TGG - chr1_3:13406265-13406284 Msa0105140:CDS 35.0%
GTTCCTCAAAACATTCCATT+GGG + chr1_3:13406441-13406460 None:intergenic 35.0%
! GTTATCTTTAGGGGTAAAGA+TGG - chr1_3:13406466-13406485 Msa0105140:intron 35.0%
!! CATGTATTTTGAACACATCC+AGG + chr1_3:13406496-13406515 None:intergenic 35.0%
ATTTACAGAGCCAAGATGAA+GGG + chr1_3:13406536-13406555 None:intergenic 35.0%
TAGTAGTGAGTTACATGACA+TGG - chr1_3:13406647-13406666 Msa0105140:intron 35.0%
TTTCCTAATGGTTGGATATC+AGG - chr1_3:13406705-13406724 Msa0105140:intron 35.0%
ACATTTAGCATTCGAGTAGA+TGG + chr1_3:13406768-13406787 None:intergenic 35.0%
ATCCCTTCTTTCTCAAAACA+TGG + chr1_3:13406807-13406826 None:intergenic 35.0%
ACTTATTAAATACCTCGGCA+TGG + chr1_3:13406905-13406924 None:intergenic 35.0%
AAAAGTCATGGTTTCTTACC+CGG - chr1_3:13407004-13407023 Msa0105140:intron 35.0%
! CTGTTTTGTGAAAAGATACC+GGG + chr1_3:13407025-13407044 None:intergenic 35.0%
AAAAGTAATCCGTGTTCAAC+CGG + chr1_3:13407063-13407082 None:intergenic 35.0%
TGTCGAAGTATGAGTAAAAG+GGG + chr1_3:13407112-13407131 None:intergenic 35.0%
! TCATACTTCGACATTTGCTA+AGG - chr1_3:13407119-13407138 Msa0105140:CDS 35.0%
! CATACTTCGACATTTGCTAA+GGG - chr1_3:13407120-13407139 Msa0105140:CDS 35.0%
GGTATAAACGAAACAAACCT+AGG + chr1_3:13407156-13407175 None:intergenic 35.0%
TTATTTCCATGAGTTCTCCA+AGG - chr1_3:13407443-13407462 Msa0105140:intron 35.0%
ATTTACATAAGCTGCTACCT+TGG + chr1_3:13407463-13407482 None:intergenic 35.0%
GCGCAAATCAGAAATATCTA+AGG + chr1_3:13407586-13407605 None:intergenic 35.0%
AACTCCATATCAATCGGATA+GGG + chr1_3:13407751-13407770 None:intergenic 35.0%
AAACTCCATATCAATCGGAT+AGG + chr1_3:13407752-13407771 None:intergenic 35.0%
!! ATGGTTGATAGAACCATACA+AGG + chr1_3:13407781-13407800 None:intergenic 35.0%
! TGTATGGTTCTATCAACCAT+TGG - chr1_3:13407781-13407800 Msa0105140:CDS 35.0%
! GTATGGTTCTATCAACCATT+GGG - chr1_3:13407782-13407801 Msa0105140:CDS 35.0%
! AAAGGCATATGCTTAAGAAG+GGG + chr1_3:13407940-13407959 None:intergenic 35.0%
! TGCCTTTTATGGAACATCTA+TGG - chr1_3:13407953-13407972 Msa0105140:intron 35.0%
CTCCATAGATGTTCCATAAA+AGG + chr1_3:13407958-13407977 None:intergenic 35.0%
! CTTTTATGGAACATCTATGG+AGG - chr1_3:13407956-13407975 Msa0105140:intron 35.0%
CAATTGATTGTGTTTGAGCA+AGG - chr1_3:13408029-13408048 Msa0105140:intron 35.0%
GTGTTTGAGCAAGGAATAAA+AGG - chr1_3:13408038-13408057 Msa0105140:intron 35.0%
!! ATACTCTTGCCACTTTCTTA+TGG + chr1_3:13408197-13408216 None:intergenic 35.0%
!!! AGGTTTTAAACGAGGATCTA+CGG - chr1_3:13408491-13408510 Msa0105140:intron 35.0%
AACCTTGCATTAGAACTTCA+TGG - chr1_3:13408753-13408772 Msa0105140:intron 35.0%
TCATATCAACACAACATTCC+CGG + chr1_3:13408804-13408823 None:intergenic 35.0%
TGTTCCTTTGTAGAATGACA+AGG - chr1_3:13408827-13408846 Msa0105140:intron 35.0%
ACAACCTTGTCATTCTACAA+AGG + chr1_3:13408834-13408853 None:intergenic 35.0%
TATGGTTTCACCATCTTAGA+TGG - chr1_3:13408916-13408935 Msa0105140:CDS 35.0%
CATACAACAATCCCCTTTAA+GGG + chr1_3:13408958-13408977 None:intergenic 35.0%
TCATACAACAATCCCCTTTA+AGG + chr1_3:13408959-13408978 None:intergenic 35.0%
GTTGATTAAGAATTCCTGAC+TGG - chr1_3:13408996-13409015 Msa0105140:five_prime_UTR 35.0%
TAAAGCAGAAGCAGTAGCTA+TGG + chr1_3:13404055-13404074 None:intergenic 40.0%
TTCCAAGCTTGACACCAAAA+GGG - chr1_3:13404098-13404117 Msa0105140:three_prime_UTR 40.0%
!!! AAGAAAGAGAGGTACCCTTT+TGG + chr1_3:13404115-13404134 None:intergenic 40.0%
!!! GTCACAGGTTTTGAGATTGA+GGG + chr1_3:13404428-13404447 None:intergenic 40.0%
!!! AGTCACAGGTTTTGAGATTG+AGG + chr1_3:13404429-13404448 None:intergenic 40.0%
CAATCTCAAAACCTGTGACT+CGG - chr1_3:13404429-13404448 Msa0105140:CDS 40.0%
AATCTCAAAACCTGTGACTC+GGG - chr1_3:13404430-13404449 Msa0105140:CDS 40.0%
GTGAGTGGTTTAATGATAGG+TGG - chr1_3:13404452-13404471 Msa0105140:CDS 40.0%
ACATAACTCGACAAAGTTGG+AGG - chr1_3:13404525-13404544 Msa0105140:intron 40.0%
ACCCTAATTTGAGCATGCAA+CGG + chr1_3:13404746-13404765 None:intergenic 40.0%
GAAGAAAGTTTCTCCTGTGT+AGG - chr1_3:13404991-13405010 Msa0105140:intron 40.0%
!! GTGGATTTTCAGGGTTTGAA+AGG - chr1_3:13405083-13405102 Msa0105140:CDS 40.0%
!! TTTGGAGTGTTTGCTGTGTT+TGG - chr1_3:13405110-13405129 Msa0105140:CDS 40.0%
GGGTGCAATATTTGATGTAC+AGG - chr1_3:13405157-13405176 Msa0105140:CDS 40.0%
! TCTAAAGCGCCACTAAGTAA+AGG - chr1_3:13405188-13405207 Msa0105140:CDS 40.0%
TTCAAGCCATAGAAGTAGCT+AGG - chr1_3:13405228-13405247 Msa0105140:CDS 40.0%
ATCATGCCTAGCTACTTCTA+TGG + chr1_3:13405237-13405256 None:intergenic 40.0%
! TAGCTGAAACCTTTTCATGG+AGG + chr1_3:13405310-13405329 None:intergenic 40.0%
GTCTCTAATTTGATCCAACG+AGG + chr1_3:13405399-13405418 None:intergenic 40.0%
TAAGCCCTTGTGAGACTATT+TGG - chr1_3:13405494-13405513 Msa0105140:intron 40.0%
AAGCCCTTGTGAGACTATTT+GGG - chr1_3:13405495-13405514 Msa0105140:intron 40.0%
TCTCCCAAATAGTCTCACAA+GGG + chr1_3:13405501-13405520 None:intergenic 40.0%
TCAGAAACTATTGGTGTAGG+TGG - chr1_3:13405792-13405811 Msa0105140:intron 40.0%
ACCATGAAAAAGGATCTAGC+TGG - chr1_3:13405859-13405878 Msa0105140:intron 40.0%
CCATGAAAAAGGATCTAGCT+GGG - chr1_3:13405860-13405879 Msa0105140:intron 40.0%
AGCAAGAGTTTCTACTGCTT+TGG - chr1_3:13406025-13406044 Msa0105140:intron 40.0%
ACTCGCTTACATGGAAGAAT+TGG - chr1_3:13406052-13406071 Msa0105140:intron 40.0%
!! ATCAGAAGTACTTGGAGAAG+AGG + chr1_3:13406129-13406148 None:intergenic 40.0%
TTAGGATGGTATGACTGAAC+TGG + chr1_3:13406209-13406228 None:intergenic 40.0%
!! TGCTTTCTCTGCTGACTTAA+AGG - chr1_3:13406253-13406272 Msa0105140:CDS 40.0%
GGATTGATATCGACATACCA+TGG + chr1_3:13406285-13406304 None:intergenic 40.0%
! TTCCATTGGGATCTGGAATA+GGG + chr1_3:13406428-13406447 None:intergenic 40.0%
! ATTCCATTGGGATCTGGAAT+AGG + chr1_3:13406429-13406448 None:intergenic 40.0%
CAAAACATTCCATTGGGATC+TGG + chr1_3:13406435-13406454 None:intergenic 40.0%
! GATCCCAATGGAATGTTTTG+AGG - chr1_3:13406435-13406454 Msa0105140:intron 40.0%
GGTTCCTCAAAACATTCCAT+TGG + chr1_3:13406442-13406461 None:intergenic 40.0%
!!! TGGAATGTTTTGAGGAACCA+TGG - chr1_3:13406443-13406462 Msa0105140:intron 40.0%
!!! GGAATGTTTTGAGGAACCAT+GGG - chr1_3:13406444-13406463 Msa0105140:intron 40.0%
! AGGAACCATGGGTTATCTTT+AGG - chr1_3:13406455-13406474 Msa0105140:intron 40.0%
! GGAACCATGGGTTATCTTTA+GGG - chr1_3:13406456-13406475 Msa0105140:intron 40.0%
! GAACCATGGGTTATCTTTAG+GGG - chr1_3:13406457-13406476 Msa0105140:intron 40.0%
TTACCCCTAAAGATAACCCA+TGG + chr1_3:13406463-13406482 None:intergenic 40.0%
TTTACAGAGCCAAGATGAAG+GGG + chr1_3:13406535-13406554 None:intergenic 40.0%
CATTTACAGAGCCAAGATGA+AGG + chr1_3:13406537-13406556 None:intergenic 40.0%
!! TCATCTTGGCTCTGTAAATG+AGG - chr1_3:13406537-13406556 Msa0105140:intron 40.0%
!! CATCTTGGCTCTGTAAATGA+GGG - chr1_3:13406538-13406557 Msa0105140:intron 40.0%
GATGAATACTAACCGTGGTA+GGG + chr1_3:13406577-13406596 None:intergenic 40.0%
CTACCACGGTTAGTATTCAT+CGG - chr1_3:13406576-13406595 Msa0105140:intron 40.0%
TAATGGTTGGATATCAGGCT+GGG - chr1_3:13406710-13406729 Msa0105140:intron 40.0%
TTGAGAAAGAAGGGATGATC+TGG - chr1_3:13406811-13406830 Msa0105140:intron 40.0%
AAGAAGGGATGATCTGGATT+TGG - chr1_3:13406817-13406836 Msa0105140:CDS 40.0%
TGGACTATAAATCCAGAAGG+AGG + chr1_3:13406885-13406904 None:intergenic 40.0%
! GCATGGACTATAAATCCAGA+AGG + chr1_3:13406888-13406907 None:intergenic 40.0%
ACAGATTGTCATGGAACTTC+CGG - chr1_3:13407041-13407060 Msa0105140:intron 40.0%
!! GGTTGAACACGGATTACTTT+TGG - chr1_3:13407062-13407081 Msa0105140:intron 40.0%
!!! AATTTTTTGACACCGGCATC+TGG - chr1_3:13407706-13407725 Msa0105140:CDS 40.0%
ATCTGGTCTGCAAGGATATT+GGG - chr1_3:13407723-13407742 Msa0105140:CDS 40.0%
GGTCGAAACTCCATATCAAT+CGG + chr1_3:13407757-13407776 None:intergenic 40.0%
! GTTGATAGAACCATACAAGG+TGG + chr1_3:13407778-13407797 None:intergenic 40.0%
CTTTGTCCTTTCAATTTCCC+GGG + chr1_3:13407817-13407836 None:intergenic 40.0%
GCTTTGTCCTTTCAATTTCC+CGG + chr1_3:13407818-13407837 None:intergenic 40.0%
CAGGTGTGTTGAACATTCTT+TGG + chr1_3:13407842-13407861 None:intergenic 40.0%
TCTCCATCGAAGAACCAATT+AGG + chr1_3:13408232-13408251 None:intergenic 40.0%
ACAAGCTTGGAGTAAGGTAT+AGG - chr1_3:13408581-13408600 Msa0105140:intron 40.0%
TTGGAGTAAGGTATAGGCTT+TGG - chr1_3:13408587-13408606 Msa0105140:intron 40.0%
!! AGTAAGGTATAGGCTTTGGA+GGG - chr1_3:13408591-13408610 Msa0105140:intron 40.0%
! AGCCATGAAGTTCTAATGCA+AGG + chr1_3:13408758-13408777 None:intergenic 40.0%
CATATCAACACAACATTCCC+GGG + chr1_3:13408803-13408822 None:intergenic 40.0%
AATGACAAGGTTGTACTCTG+AGG - chr1_3:13408840-13408859 Msa0105140:intron 40.0%
TATACCACCACCATCTAAGA+TGG + chr1_3:13408929-13408948 None:intergenic 40.0%
TGGTATAACCACACCCTTAA+AGG - chr1_3:13408942-13408961 Msa0105140:CDS 40.0%
GGTATAACCACACCCTTAAA+GGG - chr1_3:13408943-13408962 Msa0105140:CDS 40.0%
GTATAACCACACCCTTAAAG+GGG - chr1_3:13408944-13408963 Msa0105140:CDS 40.0%
GATTGTAACTCAAACCAGTC+AGG + chr1_3:13409013-13409032 None:intergenic 40.0%
AGCAGTAGCTATGGCATTCA+TGG + chr1_3:13404046-13404065 None:intergenic 45.0%
CTTCCAAGCTTGACACCAAA+AGG - chr1_3:13404097-13404116 Msa0105140:three_prime_UTR 45.0%
!!! TACCCTTTTGGTGTCAAGCT+TGG + chr1_3:13404103-13404122 None:intergenic 45.0%
CGGGTGAGTGGTTTAATGAT+AGG - chr1_3:13404449-13404468 Msa0105140:CDS 45.0%
!! TCATCCATTTTGGTCCCACA+AGG + chr1_3:13404698-13404717 None:intergenic 45.0%
TGCAACGGCGTTAAAACTCT+TGG + chr1_3:13404731-13404750 None:intergenic 45.0%
GCCGTTGCATGCTCAAATTA+GGG - chr1_3:13404742-13404761 Msa0105140:intron 45.0%
TGTGTAGGGTCTACATCTTC+CGG - chr1_3:13405006-13405025 Msa0105140:intron 45.0%
! AAGCAGACAAGAAAAGTGCG+TGG - chr1_3:13405135-13405154 Msa0105140:CDS 45.0%
! AGCAGACAAGAAAAGTGCGT+GGG - chr1_3:13405136-13405155 Msa0105140:CDS 45.0%
! CTTAGTGGCGCTTTAGATCT+TGG + chr1_3:13405185-13405204 None:intergenic 45.0%
AGTACTTAGATTGGCGAGCT+CGG - chr1_3:13405261-13405280 Msa0105140:CDS 45.0%
!! CTTTTCATGGAGGAGCATGA+TGG + chr1_3:13405300-13405319 None:intergenic 45.0%
CATCATGCTCCTCCATGAAA+AGG - chr1_3:13405298-13405317 Msa0105140:CDS 45.0%
CTCTCCCAAATAGTCTCACA+AGG + chr1_3:13405502-13405521 None:intergenic 45.0%
GACTTGAATTCACGAGCTAG+AGG + chr1_3:13405832-13405851 None:intergenic 45.0%
GCTCGTGAATTCAAGTCGAT+TGG - chr1_3:13405835-13405854 Msa0105140:intron 45.0%
GTCGATTGGCACCATGAAAA+AGG - chr1_3:13405849-13405868 Msa0105140:intron 45.0%
!! CCCAGCTAGATCCTTTTTCA+TGG + chr1_3:13405863-13405882 None:intergenic 45.0%
! ATTAGCAGAAGCACACAGAC+AGG - chr1_3:13405894-13405913 Msa0105140:CDS 45.0%
AAGTCAGCAGAGAAAGCAAC+AGG + chr1_3:13406251-13406270 None:intergenic 45.0%
! ATTGGGATCTGGAATAGGGA+AGG + chr1_3:13406424-13406443 None:intergenic 45.0%
TTCCCTATTCCAGATCCCAA+TGG - chr1_3:13406423-13406442 Msa0105140:intron 45.0%
CGATGAATACTAACCGTGGT+AGG + chr1_3:13406578-13406597 None:intergenic 45.0%
GTTCCGATGAATACTAACCG+TGG + chr1_3:13406582-13406601 None:intergenic 45.0%
CAGCCTGATATCCAACCATT+AGG + chr1_3:13406711-13406730 None:intergenic 45.0%
CTAATGGTTGGATATCAGGC+TGG - chr1_3:13406709-13406728 Msa0105140:intron 45.0%
AAGAAGGAAGTGATGCTGCT+GGG + chr1_3:13406857-13406876 None:intergenic 45.0%
AAAGAAGGAAGTGATGCTGC+TGG + chr1_3:13406858-13406877 None:intergenic 45.0%
CCAGAAGGAGGTAGTAAAGA+AGG + chr1_3:13406873-13406892 None:intergenic 45.0%
CCTTCTTTACTACCTCCTTC+TGG - chr1_3:13406870-13406889 Msa0105140:CDS 45.0%
TGGATTTATAGTCCATGCCG+AGG - chr1_3:13406890-13406909 Msa0105140:CDS 45.0%
ATGGAACTTCCGGTTGAACA+CGG - chr1_3:13407051-13407070 Msa0105140:intron 45.0%
! CTTCGACATTTGCTAAGGGA+TGG - chr1_3:13407124-13407143 Msa0105140:CDS 45.0%
TTACCTGGCATAAGCACTTG+TGG - chr1_3:13407362-13407381 Msa0105140:intron 45.0%
TACCTGGCATAAGCACTTGT+GGG - chr1_3:13407363-13407382 Msa0105140:intron 45.0%
TAAGCACTTGTGGGACTGTT+TGG - chr1_3:13407372-13407391 Msa0105140:intron 45.0%
CATCTGGTCTGCAAGGATAT+TGG - chr1_3:13407722-13407741 Msa0105140:CDS 45.0%
GGATCCCTATCCGATTGATA+TGG - chr1_3:13407744-13407763 Msa0105140:CDS 45.0%
AGGGTAAGCAGACATGTAGT+TGG + chr1_3:13407867-13407886 None:intergenic 45.0%
!!! ATGGAGGCATTTTGCAGAAC+AGG - chr1_3:13407972-13407991 Msa0105140:intron 45.0%
TAACCACTCGGACAAATCAC+AGG + chr1_3:13408162-13408181 None:intergenic 45.0%
! GTGCCTAATTGGTTCTTCGA+TGG - chr1_3:13408226-13408245 Msa0105140:intron 45.0%
CCAAGCTTGTCATAGGTAAC+TGG + chr1_3:13408571-13408590 None:intergenic 45.0%
CCAGTTACCTATGACAAGCT+TGG - chr1_3:13408568-13408587 Msa0105140:intron 45.0%
CCTTACTCCAAGCTTGTCAT+AGG + chr1_3:13408578-13408597 None:intergenic 45.0%
CCTATGACAAGCTTGGAGTA+AGG - chr1_3:13408575-13408594 Msa0105140:intron 45.0%
! GAGTAAGGTATAGGCTTTGG+AGG - chr1_3:13408590-13408609 Msa0105140:intron 45.0%
TTGGAGGGATGCATTGGAAA+AGG - chr1_3:13408606-13408625 Msa0105140:intron 45.0%
TGGAGGGATGCATTGGAAAA+GGG - chr1_3:13408607-13408626 Msa0105140:intron 45.0%
ATCAACCTAGTGAAGCTACC+CGG - chr1_3:13408782-13408801 Msa0105140:intron 45.0%
GGTTTCACCATCTTAGATGG+TGG - chr1_3:13408919-13408938 Msa0105140:CDS 45.0%
! TTCACCATCTTAGATGGTGG+TGG - chr1_3:13408922-13408941 Msa0105140:CDS 45.0%
! AACAATCCCCTTTAAGGGTG+TGG + chr1_3:13408953-13408972 None:intergenic 45.0%
!! AAAATAACAAAAAAAAAAAA+AGG + chr1_3:13404158-13404177 None:intergenic 5.0%
!!! ATCATTTTTTTTAAATAAAA+AGG + chr1_3:13406306-13406325 None:intergenic 5.0%
ACTCGACAAAGTTGGAGGTG+TGG - chr1_3:13404530-13404549 Msa0105140:intron 50.0%
CGCCGTTGCATGCTCAAATT+AGG - chr1_3:13404741-13404760 Msa0105140:intron 50.0%
GGAAGATGTAGACCCTACAC+AGG + chr1_3:13405007-13405026 None:intergenic 50.0%
! GCAGACAAGAAAAGTGCGTG+GGG - chr1_3:13405137-13405156 Msa0105140:CDS 50.0%
AAAGGATCTAGCTGGGTTGC+AGG - chr1_3:13405867-13405886 Msa0105140:CDS 50.0%
ACTTGGAGAAGAGGACGTCT+CGG + chr1_3:13406120-13406139 None:intergenic 50.0%
AGGGGTAAAGATGGCAAACC+TGG - chr1_3:13406475-13406494 Msa0105140:intron 50.0%
AGAGCATGTCCCCTTCATCT+TGG - chr1_3:13406523-13406542 Msa0105140:intron 50.0%
GGCTGGGAATATACGACAGA+CGG - chr1_3:13406726-13406745 Msa0105140:intron 50.0%
AGAAGGAAGTGATGCTGCTG+GGG + chr1_3:13406856-13406875 None:intergenic 50.0%
! CTAAGGGATGGAGTGTTCCT+AGG - chr1_3:13407136-13407155 Msa0105140:CDS 50.0%
CTGCTACCTTGGAGAACTCA+TGG + chr1_3:13407452-13407471 None:intergenic 50.0%
TATCCTTGCAGACCAGATGC+CGG + chr1_3:13407721-13407740 None:intergenic 50.0%
GGAGTTTCGACCACCTTGTA+TGG - chr1_3:13407765-13407784 Msa0105140:CDS 50.0%
ACCATTGGGATTTCGAAGCC+CGG - chr1_3:13407796-13407815 Msa0105140:CDS 50.0%
TCGAAGCCCGGGAAATTGAA+AGG - chr1_3:13407808-13407827 Msa0105140:CDS 50.0%
! AGCAGACATGTAGTTGGTGC+AGG + chr1_3:13407861-13407880 None:intergenic 50.0%
CACTCGGACAAATCACAGGT+TGG + chr1_3:13408158-13408177 None:intergenic 50.0%
! CAACCTGTGATTTGTCCGAG+TGG - chr1_3:13408156-13408175 Msa0105140:intron 50.0%
GAGGATCTACGGCTAGTAGT+TGG - chr1_3:13408502-13408521 Msa0105140:intron 50.0%
!! TAGGCTTTGGAGGGATGCAT+TGG - chr1_3:13408600-13408619 Msa0105140:intron 50.0%
TCAACCTAGTGAAGCTACCC+GGG - chr1_3:13408783-13408802 Msa0105140:intron 50.0%
! AAACCTGTGACTCGGGTGAG+TGG - chr1_3:13404437-13404456 Msa0105140:CDS 55.0%
AAACCACTCACCCGAGTCAC+AGG + chr1_3:13404443-13404462 None:intergenic 55.0%
GATTACGCAGTTGCGTGCGA+AGG + chr1_3:13404668-13404687 None:intergenic 55.0%
! CGTAATCCCTCGAGCCTTGT+GGG - chr1_3:13404681-13404700 Msa0105140:intron 55.0%
TTTGGTCCCACAAGGCTCGA+GGG + chr1_3:13404690-13404709 None:intergenic 55.0%
! TTTTGGTCCCACAAGGCTCG+AGG + chr1_3:13404691-13404710 None:intergenic 55.0%
! CGAGCCTTGTGGGACCAAAA+TGG - chr1_3:13404691-13404710 Msa0105140:intron 55.0%
CAGACATGCATGCACCTCGT+TGG - chr1_3:13405382-13405401 Msa0105140:intron 55.0%
CGTATCGCATGTCCCTACCA+CGG - chr1_3:13406562-13406581 Msa0105140:intron 55.0%
GGGATGATCTGGATTTGGCC+TGG - chr1_3:13406822-13406841 Msa0105140:CDS 55.0%
GAAGGAAGTGATGCTGCTGG+GGG + chr1_3:13406855-13406874 None:intergenic 55.0%
GTCCCACAAGTGCTTATGCC+AGG + chr1_3:13407368-13407387 None:intergenic 55.0%
CCATTGGGATTTCGAAGCCC+GGG - chr1_3:13407797-13407816 Msa0105140:CDS 55.0%
CATTCCCGGGTAGCTTCACT+AGG + chr1_3:13408790-13408809 None:intergenic 55.0%
GCGTAATCCCTCGAGCCTTG+TGG - chr1_3:13404680-13404699 Msa0105140:intron 60.0%
GGGCGTGCGCAAGATCCAAA+AGG + chr1_3:13407092-13407111 None:intergenic 60.0%
ACACCGGCATCTGGTCTGCA+AGG - chr1_3:13407715-13407734 Msa0105140:CDS 60.0%
CCCGGGCTTCGAAATCCCAA+TGG + chr1_3:13407800-13407819 None:intergenic 60.0%
GCTGCTGGGGGATCACTGCC+AGG + chr1_3:13406843-13406862 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 13403963 13409056 13403963 ID=Msa0105140;Name=Msa0105140
chr1_3 mRNA 13403963 13409056 13403963 ID=Msa0105140-mRNA-1;Parent=Msa0105140;Name=Msa0105140-mRNA-1;_AED=0.14;_eAED=0.14;_QI=82|0.85|0.87|1|1|1|8|390|454
chr1_3 exon 13403963 13404526 13403963 ID=Msa0105140-mRNA-1:exon:5299;Parent=Msa0105140-mRNA-1
chr1_3 exon 13405026 13405320 13405026 ID=Msa0105140-mRNA-1:exon:5298;Parent=Msa0105140-mRNA-1
chr1_3 exon 13405862 13405974 13405862 ID=Msa0105140-mRNA-1:exon:5297;Parent=Msa0105140-mRNA-1
chr1_3 exon 13406108 13406292 13406108 ID=Msa0105140-mRNA-1:exon:5296;Parent=Msa0105140-mRNA-1
chr1_3 exon 13406816 13407008 13406816 ID=Msa0105140-mRNA-1:exon:5295;Parent=Msa0105140-mRNA-1
chr1_3 exon 13407104 13407208 13407104 ID=Msa0105140-mRNA-1:exon:5294;Parent=Msa0105140-mRNA-1
chr1_3 exon 13407700 13407924 13407700 ID=Msa0105140-mRNA-1:exon:5293;Parent=Msa0105140-mRNA-1
chr1_3 exon 13408900 13409056 13408900 ID=Msa0105140-mRNA-1:exon:5292;Parent=Msa0105140-mRNA-1
chr1_3 five_prime_UTR 13408975 13409056 13408975 ID=Msa0105140-mRNA-1:five_prime_utr;Parent=Msa0105140-mRNA-1
chr1_3 CDS 13408900 13408974 13408900 ID=Msa0105140-mRNA-1:cds;Parent=Msa0105140-mRNA-1
chr1_3 CDS 13407700 13407924 13407700 ID=Msa0105140-mRNA-1:cds;Parent=Msa0105140-mRNA-1
chr1_3 CDS 13407104 13407208 13407104 ID=Msa0105140-mRNA-1:cds;Parent=Msa0105140-mRNA-1
chr1_3 CDS 13406816 13407008 13406816 ID=Msa0105140-mRNA-1:cds;Parent=Msa0105140-mRNA-1
chr1_3 CDS 13406108 13406292 13406108 ID=Msa0105140-mRNA-1:cds;Parent=Msa0105140-mRNA-1
chr1_3 CDS 13405862 13405974 13405862 ID=Msa0105140-mRNA-1:cds;Parent=Msa0105140-mRNA-1
chr1_3 CDS 13405026 13405320 13405026 ID=Msa0105140-mRNA-1:cds;Parent=Msa0105140-mRNA-1
chr1_3 CDS 13404353 13404526 13404353 ID=Msa0105140-mRNA-1:cds;Parent=Msa0105140-mRNA-1
chr1_3 three_prime_UTR 13403963 13404352 13403963 ID=Msa0105140-mRNA-1:three_prime_utr;Parent=Msa0105140-mRNA-1
Gene Sequence

>Msa0105140

ATGAATGCCATAGCTACTGCTTCTGCTTTATCTCTTCCTATCTTTTGTAGAACTTCCAAGCTTGACACCAAAAGGGGTTTGAAAGGTAAATTTGGAGTGTTTGCTGTGTTTGGAGAAGCAGACAAGAAAAGTGCGTGGGGTGCAATATTTGATGTACAGGATCCAAGATCTAAAGCGCCACTAAGTAAAGGAAAAGTTTTGGATGTATTTCAAGCCATAGAAGTAGCTAGGCATGATATTGAGTACTTAGATTGGCGAGCTCGGCAAGATGTGCTTACCATCATGCTCCTCCATGAAAAGGTGGTTGAAGTTCTTAATCCTCTAGCTCGTGAATTCAAGTCGATTGGCACCATGAAAAAGGATCTAGCTGGGTTGCAGGACGAATTAGCAGAAGCACACAGACAGGTCCATATATCTGAAGCAAGAGTTTCTACTGCTTTGGATAAACTCGCTTACATGGAAGAATTGGTAAATGACAGGCTATTGCAAGACAGAAGCACAGCTGAAGTTGCCGAGACGTCCTCTTCTCCAAGTACTTCTGATAAATCTGTACATACTGAAAGAAGAAGGAAGCCGAAGAAAAGCTTAAATGTATCAGGCTGGGAATATACGACAGACGGAAAATGCGAGAAAATGCCATCTACTCGAATGCTAAATGTAAAGATAAAGTCAATTCCATGTTTTGAGAAAGAAGGGATGATCTGGATTTGGCCTGGCAGTGATCCCCCAGCAGCATCACTTCCTTCTTTACTACCTCCTTCTGGATTTATAGTCCATGCCGAGATTGTCATGGAACTTCCGGTTGAACACGGATTACTTTTGGACAACCTTTTGGATCTTGCGCACGCCCCTTTTACTCATACTTCGACATTTGCTAAGGGATGGAGTGTTCCTAGCTTTGTGAATTTTTTGACACCGGCATCTGGTCTGCAAGGATATTGGGATCCCTATCCGATTGATATGGAGTTTCGACCACCTTGTATGGTTCTATCAACCATTGGGATTTCGAAGCCCGGGAAATTGAAAGGACAAAGCACCAAAGAATGTTCAACACACCTGCACCAACTACATGTCTGCTTACCCTCTTCAAAAGATAAAACAAGATTGCTATATAGAATGTCACTGGATTTCGCTCCCCTTCTTAAGCATATGCCTTTTATGGAACATCTATGGAGGCATTTTGCAGAACAGGTTTTAAACGAGGATCTACGGCTAGTAGTTGGCCAACAAGAGAGAATGAATAAAGGTGCAAATGTATGGAATGTGCCAGTTACCTATGACAAGCTTGGAGTAAGGTATAGGCTTTGGAGGGATGCATTGGAAAAGGGAGATAAGCAACTACCCTTCAACACACACAATAATTAA
Protein sequence

>Msa0105140

MNAIATASALSLPIFCRTSKLDTKRGLKGKFGVFAVFGEADKKSAWGAIFDVQDPRSKAPLSKGKVLDVFQAIEVARHDIEYLDWRARQDVLTIMLLHEKVVEVLNPLAREFKSIGTMKKDLAGLQDELAEAHRQVHISEARVSTALDKLAYMEELVNDRLLQDRSTAEVAETSSSPSTSDKSVHTERRRKPKKSLNVSGWEYTTDGKCEKMPSTRMLNVKIKSIPCFEKEGMIWIWPGSDPPAASLPSLLPPSGFIVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSFVNFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLKGQSTKECSTHLHQLHVCLPSSKDKTRLLYRMSLDFAPLLKHMPFMEHLWRHFAEQVLNEDLRLVVGQQERMNKGANVWNVPVTYDKLGVRYRLWRDALEKGDKQLPFNTHNN*