AlfalfaGEDB | Msa1394070

M. sativa cultivar zhongmu-4 / Msa1394070

KEGG: K02707|K02713
GO: -
PFAM: PF00283.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1394070	KAH0447118.1	70.370	135	9	1	1	104	24	158	1.99e-56	182

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1394070	sp\|Q2PMR7\|PSBE_SOYBN	71.951	82	23	0	1	82	1	82	7.78e-34	115

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1394070	A0A6A5LQW0	72.527	91	18	1	1	84	1	91	7.76e-36	126

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001550	Msa1394070	0.818100	2.338026e-52	-8.615850e-47
Msa0002110	Msa1394070	0.870677	1.217766e-66	-8.615850e-47
Msa0002690	Msa1394070	0.855411	6.422560e-62	-8.615850e-47
Msa0002700	Msa1394070	0.848928	4.482638e-60	-8.615850e-47
Msa0003340	Msa1394070	0.810046	1.400379e-50	-8.615850e-47
Msa0004180	Msa1394070	0.868053	8.687140e-66	-8.615850e-47
Msa0007810	Msa1394070	0.840695	7.447124e-58	-8.615850e-47
Msa0011060	Msa1394070	0.821270	4.413385e-53	-8.615850e-47
Msa0011100	Msa1394070	0.819928	8.978428e-53	-8.615850e-47
Msa0011410	Msa1394070	0.867970	9.237906e-66	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1394070	MtrunA17_CPg0492821	70.732	82	24	0	1	82	1	82	6.38e-34	112
Msa1394070	MtrunA17_Chr4g0016851	70.732	82	24	0	1	82	1	82	6.38e-34	112
Msa1394070	MtrunA17_Chr4g0015751	70.732	82	24	0	1	82	1	82	6.38e-34	112
Msa1394070	MtrunA17_Chr4g0017011	98.148	54	1	0	1	54	1	54	2.07e-33	111
Msa1394070	MtrunA17_Chr5g0423051	96.296	54	2	0	1	54	1	54	3.52e-32	107
Msa1394070	MtrunA17_Chr4g0016841	61.538	91	21	2	14	104	9	85	4.52e-31	105
Msa1394070	MtrunA17_Chr6g0451331	90.323	31	3	0	24	54	41	71	5.28e-14	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1394070	ATCG00580.1	70.732	82	24	0	1	82	1	82	1.19e-34	114
Msa1394070	ATCG00560.1	97.297	37	1	0	68	104	2	38	3.75e-19	73.9

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Find 27 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATAATCCAGTATCGAATAC+TGG	0.423687	tig0021785:+17639	None:intergenic
AATCGTACCAGTCTCTACTG+GGG	0.711157	tig0021785:-17240	Msa1394070:CDS
ATAACCAACCCGCAATGAAT+AGG	0.348030	tig0021785:+17596	None:intergenic
ATACCCTCCCTATTCATTGC+GGG	0.391873	tig0021785:-17604	Msa1394070:CDS
ATTCGGATTAGGTTTATCGT+TGG	0.512045	tig0021785:+17311	None:intergenic
CAACCCGCAATGAATAGGGA+GGG	0.665638	tig0021785:+17601	None:intergenic
CCAACCCGCAATGAATAGGG+AGG	0.678708	tig0021785:+17600	None:intergenic
CCTCCCTATTCATTGCGGGT+TGG	0.536548	tig0021785:-17600	Msa1394070:CDS
CTCGGCATGTCTGGAAGCAC+AGG	0.508926	tig0021785:-17688	Msa1394070:exon
CTGTAAAATACTCGTTTGGA+CGG	0.550313	tig0021785:+17533	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATTACCAGTATTCGATAC+TGG	-	tig0021785:17242-17261	Msa1394070:CDS	30.0%
CTTTCTGTAAAATACTCGTT+TGG	+	tig0021785:17361-17380	None:intergenic	30.0%
CAAGGAATTCCATTAATAAC+TGG	-	tig0021785:17385-17404	Msa1394070:intron	30.0%
GTTGTTCCAAAGAATCAAAA+CGG	+	tig0021785:17411-17430	None:intergenic	30.0%
AACCATCGTACTGTAAAAAT+GGG	+	tig0021785:17490-17509	None:intergenic	30.0%
TGTAAAATACTCGTTTGGAC+GGG	+	tig0021785:17356-17375	None:intergenic	35.0%
CTGTAAAATACTCGTTTGGA+CGG	+	tig0021785:17357-17376	None:intergenic	35.0%
TCAAAACGGCCAGTTATTAA+TGG	+	tig0021785:17397-17416	None:intergenic	35.0%
TCGTACTGTAAAAATGGGAT+AGG	+	tig0021785:17485-17504	None:intergenic	35.0%
CAACCATCGTACTGTAAAAA+TGG	+	tig0021785:17491-17510	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021785	gene	17188	17721	17188	ID=Msa1394070;Name=Msa1394070
tig0021785	mRNA	17188	17721	17188	ID=Msa1394070-mRNA-1;Parent=Msa1394070;Name=Msa1394070-mRNA-1;_AED=0.22;_eAED=0.22;_QI=17\|0\|0\|1\|0\|0\|2\|0\|104
tig0021785	exon	17544	17721	17544	ID=Msa1394070-mRNA-1:exon:14245;Parent=Msa1394070-mRNA-1
tig0021785	exon	17188	17338	17188	ID=Msa1394070-mRNA-1:exon:14244;Parent=Msa1394070-mRNA-1
tig0021785	five_prime_UTR	17705	17721	17705	ID=Msa1394070-mRNA-1:five_prime_utr;Parent=Msa1394070-mRNA-1
tig0021785	CDS	17544	17704	17544	ID=Msa1394070-mRNA-1:cds;Parent=Msa1394070-mRNA-1
tig0021785	CDS	17188	17338	17188	ID=Msa1394070-mRNA-1:cds;Parent=Msa1394070-mRNA-1

Gene Sequence	>Msa1394070 ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGGATTATTCATAGCATTACTATACCCTCCCTATTCATTGCGGGTTGGTTATTTGTCAGCACGGGTTTAGCTTACGATGTATTTGGAAGTCCCCGTCCAAACGATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTACGACACAATCAAACCCAAATGAACAAAATGTTGAATTGAATCGTACCAGTCTCTACTGGGGTTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCAAATTATTTCTTCAAT
Protein sequence	>Msa1394070 MSGSTGERSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNDSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN