Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351330 | GAU38453.1 | 69.482 | 521 | 64 | 12 | 18 | 450 | 1 | 514 | 0.0 | 662 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351330 | sp|Q9LDD4|ARID2_ARATH | 37.037 | 216 | 107 | 7 | 159 | 358 | 370 | 572 | 1.92e-23 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351330 | A0A2Z6N8Q8 | 69.482 | 521 | 64 | 12 | 18 | 450 | 1 | 514 | 0.0 | 662 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003220 | Msa0351330 | 0.815408 | 9.389186e-52 | -8.615850e-47 |
| Msa0003270 | Msa0351330 | 0.832048 | 1.180760e-55 | -8.615850e-47 |
| Msa0008220 | Msa0351330 | 0.821385 | 4.152730e-53 | -8.615850e-47 |
| Msa0010770 | Msa0351330 | 0.821486 | 3.936162e-53 | -8.615850e-47 |
| Msa0045550 | Msa0351330 | 0.802836 | 4.644191e-49 | -8.615850e-47 |
| Msa0047250 | Msa0351330 | 0.802938 | 4.424205e-49 | -8.615850e-47 |
| Msa0055070 | Msa0351330 | 0.804128 | 2.506372e-49 | -8.615850e-47 |
| Msa0057370 | Msa0351330 | 0.830697 | 2.537178e-55 | -8.615850e-47 |
| Msa0074750 | Msa0351330 | 0.801639 | 8.187774e-49 | -8.615850e-47 |
| Msa0077900 | Msa0351330 | 0.800355 | 1.498646e-48 | -8.615850e-47 |
| Msa0096580 | Msa0351330 | 0.816830 | 4.518125e-52 | -8.615850e-47 |
| Msa0101020 | Msa0351330 | 0.800775 | 1.230109e-48 | -8.615850e-47 |
| Msa0125790 | Msa0351330 | 0.809457 | 1.874705e-50 | -8.615850e-47 |
| Msa0133820 | Msa0351330 | 0.805852 | 1.093000e-49 | -8.615850e-47 |
| Msa0138210 | Msa0351330 | 0.805489 | 1.302117e-49 | -8.615850e-47 |
| Msa0145110 | Msa0351330 | 0.806055 | 9.905177e-50 | -8.615850e-47 |
| Msa0146080 | Msa0351330 | 0.800600 | 1.335541e-48 | -8.615850e-47 |
| Msa0174000 | Msa0351330 | 0.808115 | 3.628344e-50 | -8.615850e-47 |
| Msa0183420 | Msa0351330 | 0.814848 | 1.249702e-51 | -8.615850e-47 |
| Msa0193600 | Msa0351330 | 0.806497 | 7.993347e-50 | -8.615850e-47 |
| Msa0210260 | Msa0351330 | 0.815734 | 7.943200e-52 | -8.615850e-47 |
| Msa0227230 | Msa0351330 | 0.808607 | 2.850723e-50 | -8.615850e-47 |
| Msa0229940 | Msa0351330 | 0.800997 | 1.108339e-48 | -8.615850e-47 |
| Msa0238030 | Msa0351330 | 0.803056 | 4.181618e-49 | -8.615850e-47 |
| Msa0244980 | Msa0351330 | 0.804576 | 2.021318e-49 | -8.615850e-47 |
| Msa0247060 | Msa0351330 | 0.800162 | 1.640263e-48 | -8.615850e-47 |
| Msa0265600 | Msa0351330 | 0.802093 | 6.607642e-49 | -8.615850e-47 |
| Msa0271790 | Msa0351330 | 0.812982 | 3.223050e-51 | -8.615850e-47 |
| Msa0273650 | Msa0351330 | 0.804886 | 1.741586e-49 | -8.615850e-47 |
| Msa0304840 | Msa0351330 | 0.806882 | 6.627336e-50 | -8.615850e-47 |
| Msa0341230 | Msa0351330 | 0.804895 | 1.734213e-49 | -8.615850e-47 |
| Msa0347990 | Msa0351330 | 0.822575 | 2.201034e-53 | -8.615850e-47 |
| Msa0351330 | Msa0382370 | 0.820434 | 6.872866e-53 | -8.615850e-47 |
| Msa0351330 | Msa0384670 | 0.819298 | 1.249835e-52 | -8.615850e-47 |
| Msa0351330 | Msa0387050 | 0.807255 | 5.525930e-50 | -8.615850e-47 |
| Msa0351330 | Msa0388650 | 0.811208 | 7.852565e-51 | -8.615850e-47 |
| Msa0351330 | Msa0434570 | 0.819507 | 1.119936e-52 | -8.615850e-47 |
| Msa0351330 | Msa0434770 | 0.820818 | 5.609226e-53 | -8.615850e-47 |
| Msa0351330 | Msa0439890 | 0.823026 | 1.728382e-53 | -8.615850e-47 |
| Msa0351330 | Msa0442310 | 0.904465 | 1.192960e-79 | -8.615850e-47 |
| Msa0351330 | Msa0478580 | 0.821964 | 3.051195e-53 | -8.615850e-47 |
| Msa0351330 | Msa0510290 | 0.801960 | 7.034468e-49 | -8.615850e-47 |
| Msa0351330 | Msa0514610 | 0.826760 | 2.272486e-54 | -8.615850e-47 |
| Msa0351330 | Msa0537770 | 0.814731 | 1.326926e-51 | -8.615850e-47 |
| Msa0351330 | Msa0547990 | 0.816550 | 5.219642e-52 | -8.615850e-47 |
| Msa0351330 | Msa0549790 | 0.818328 | 2.075488e-52 | -8.615850e-47 |
| Msa0351330 | Msa0583500 | 0.821098 | 4.836671e-53 | -8.615850e-47 |
| Msa0351330 | Msa0585650 | -0.805581 | 1.245557e-49 | -8.615850e-47 |
| Msa0351330 | Msa0609220 | 0.800049 | 1.729661e-48 | -8.615850e-47 |
| Msa0351330 | Msa0640940 | 0.802574 | 5.259830e-49 | -8.615850e-47 |
| Msa0351330 | Msa0644030 | 0.813767 | 2.167017e-51 | -8.615850e-47 |
| Msa0351330 | Msa0647430 | 0.800630 | 1.316720e-48 | -8.615850e-47 |
| Msa0351330 | Msa0659550 | 0.802864 | 4.581472e-49 | -8.615850e-47 |
| Msa0351330 | Msa0659990 | 0.804988 | 1.658132e-49 | -8.615850e-47 |
| Msa0351330 | Msa0679100 | 0.802420 | 5.657401e-49 | -8.615850e-47 |
| Msa0351330 | Msa0687230 | 0.802297 | 5.998792e-49 | -8.615850e-47 |
| Msa0351330 | Msa0689420 | 0.806634 | 7.478405e-50 | -8.615850e-47 |
| Msa0351330 | Msa0706390 | 0.808466 | 3.055407e-50 | -8.615850e-47 |
| Msa0351330 | Msa0716860 | 0.809391 | 1.936368e-50 | -8.615850e-47 |
| Msa0351330 | Msa0743530 | 0.843986 | 9.997045e-59 | -8.615850e-47 |
| Msa0351330 | Msa0750250 | 0.804259 | 2.353892e-49 | -8.615850e-47 |
| Msa0351330 | Msa0756930 | 0.831670 | 1.463600e-55 | -8.615850e-47 |
| Msa0351330 | Msa0776750 | 0.840650 | 7.653636e-58 | -8.615850e-47 |
| Msa0351330 | Msa0789560 | 0.815141 | 1.076306e-51 | -8.615850e-47 |
| Msa0351330 | Msa0818770 | 0.809333 | 1.992584e-50 | -8.615850e-47 |
| Msa0351330 | Msa0822170 | 0.834645 | 2.659495e-56 | -8.615850e-47 |
| Msa0351330 | Msa0869010 | 0.812956 | 3.264854e-51 | -8.615850e-47 |
| Msa0351330 | Msa0870650 | 0.800993 | 1.110509e-48 | -8.615850e-47 |
| Msa0351330 | Msa0877710 | 0.811515 | 6.737369e-51 | -8.615850e-47 |
| Msa0351330 | Msa0969330 | 0.820908 | 5.349740e-53 | -8.615850e-47 |
| Msa0351330 | Msa0970320 | 0.807520 | 4.856802e-50 | -8.615850e-47 |
| Msa0351330 | Msa1036740 | 0.826419 | 2.741011e-54 | -8.615850e-47 |
| Msa0351330 | Msa1056460 | 0.801481 | 8.824714e-49 | -8.615850e-47 |
| Msa0351330 | Msa1068390 | 0.802170 | 6.371523e-49 | -8.615850e-47 |
| Msa0351330 | Msa1069820 | 0.800565 | 1.357835e-48 | -8.615850e-47 |
| Msa0351330 | Msa1073830 | 0.802324 | 5.920504e-49 | -8.615850e-47 |
| Msa0351330 | Msa1098890 | 0.805315 | 1.416847e-49 | -8.615850e-47 |
| Msa0351330 | Msa1122780 | 0.815385 | 9.498837e-52 | -8.615850e-47 |
| Msa0351330 | Msa1127430 | 0.859498 | 3.969264e-63 | -8.615850e-47 |
| Msa0351330 | Msa1154490 | 0.800319 | 1.523627e-48 | -8.615850e-47 |
| Msa0351330 | Msa1163870 | 0.811828 | 5.758161e-51 | -8.615850e-47 |
| Msa0351330 | Msa1168550 | 0.810064 | 1.388017e-50 | -8.615850e-47 |
| Msa0351330 | Msa1168590 | 0.802377 | 5.773838e-49 | -8.615850e-47 |
| Msa0351330 | Msa1188560 | 0.817389 | 3.382758e-52 | -8.615850e-47 |
| Msa0351330 | Msa1199710 | 0.825437 | 4.690682e-54 | -8.615850e-47 |
| Msa0351330 | Msa1201640 | 0.807195 | 5.691693e-50 | -8.615850e-47 |
| Msa0351330 | Msa1205480 | 0.806886 | 6.615157e-50 | -8.615850e-47 |
| Msa0351330 | Msa1211340 | 0.801086 | 1.062659e-48 | -8.615850e-47 |
| Msa0351330 | Msa1276970 | 0.809166 | 2.164352e-50 | -8.615850e-47 |
| Msa0351330 | Msa1296300 | 0.837727 | 4.382617e-57 | -8.615850e-47 |
| Msa0351330 | Msa1329450 | 0.812885 | 3.384466e-51 | -8.615850e-47 |
| Msa0351330 | Msa1329790 | 0.800769 | 1.233755e-48 | -8.615850e-47 |
| Msa0351330 | Msa1336040 | 0.824977 | 6.024471e-54 | -8.615850e-47 |
| Msa0351330 | Msa1341490 | 0.812317 | 4.505542e-51 | -8.615850e-47 |
| Msa0351330 | Msa1372290 | 0.801413 | 9.112449e-49 | -8.615850e-47 |
| Msa0351330 | Msa1381650 | 0.803000 | 4.296159e-49 | -8.615850e-47 |
| Msa0351330 | Msa1393800 | 0.802648 | 5.077444e-49 | -8.615850e-47 |
| Msa0351330 | Msa1396940 | 0.804369 | 2.233172e-49 | -8.615850e-47 |
| Msa0351330 | Msa1426910 | 0.809581 | 1.762623e-50 | -8.615850e-47 |
| Msa0351330 | Msa1454960 | 0.805518 | 1.284180e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351330 | MtrunA17_Chr3g0086341 | 91.018 | 334 | 12 | 2 | 18 | 333 | 1 | 334 | 0.0 | 623 |
| Msa0351330 | MtrunA17_Chr3g0086341 | 95.041 | 121 | 6 | 0 | 330 | 450 | 394 | 514 | 1.75e-78 | 253 |
| Msa0351330 | MtrunA17_Chr7g0248041 | 34.921 | 189 | 95 | 5 | 154 | 325 | 378 | 555 | 1.74e-24 | 106 |
| Msa0351330 | MtrunA17_Chr1g0186281 | 37.500 | 184 | 83 | 7 | 161 | 325 | 380 | 550 | 6.48e-21 | 95.5 |
| Msa0351330 | MtrunA17_Chr1g0186261 | 36.957 | 184 | 84 | 7 | 161 | 325 | 383 | 553 | 6.95e-21 | 95.5 |
| Msa0351330 | MtrunA17_Chr1g0186191 | 36.683 | 199 | 94 | 7 | 146 | 325 | 375 | 560 | 1.39e-20 | 94.4 |
| Msa0351330 | MtrunA17_Chr8g0387161 | 34.375 | 192 | 96 | 7 | 153 | 325 | 82 | 262 | 4.02e-20 | 90.5 |
| Msa0351330 | MtrunA17_Chr8g0387181 | 37.912 | 182 | 85 | 6 | 161 | 325 | 423 | 593 | 6.58e-20 | 92.4 |
| Msa0351330 | MtrunA17_Chr8g0387141 | 35.821 | 201 | 100 | 7 | 161 | 343 | 391 | 580 | 8.38e-20 | 92.0 |
| Msa0351330 | MtrunA17_Chr8g0348691 | 30.978 | 184 | 95 | 7 | 163 | 325 | 76 | 248 | 5.43e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351330 | AT1G13880.1 | 32.438 | 447 | 237 | 16 | 21 | 440 | 4 | 412 | 9.10e-57 | 194 |
| Msa0351330 | AT1G13880.2 | 32.438 | 447 | 237 | 16 | 21 | 440 | 14 | 422 | 1.16e-56 | 193 |
| Msa0351330 | AT1G13880.3 | 32.215 | 447 | 239 | 16 | 21 | 440 | 4 | 413 | 1.71e-56 | 193 |
| Msa0351330 | AT1G26580.2 | 36.471 | 340 | 170 | 10 | 18 | 328 | 1 | 323 | 4.42e-49 | 175 |
| Msa0351330 | AT1G26580.1 | 36.471 | 340 | 170 | 10 | 18 | 328 | 1 | 323 | 4.42e-49 | 175 |
| Msa0351330 | AT1G26580.3 | 42.222 | 225 | 106 | 5 | 128 | 328 | 33 | 257 | 1.27e-48 | 172 |
| Msa0351330 | AT2G03470.1 | 32.927 | 328 | 172 | 7 | 18 | 327 | 1 | 298 | 2.56e-48 | 172 |
| Msa0351330 | AT2G03470.2 | 43.590 | 195 | 91 | 2 | 148 | 327 | 107 | 297 | 4.03e-48 | 171 |
| Msa0351330 | AT4G11400.2 | 37.037 | 216 | 107 | 7 | 159 | 358 | 370 | 572 | 1.95e-24 | 106 |
| Msa0351330 | AT4G11400.1 | 37.037 | 216 | 107 | 7 | 159 | 358 | 370 | 572 | 1.95e-24 | 106 |
| Msa0351330 | AT5G04110.1 | 29.121 | 182 | 105 | 4 | 160 | 324 | 358 | 532 | 1.52e-17 | 85.5 |
| Msa0351330 | AT5G04110.3 | 29.121 | 182 | 105 | 4 | 160 | 324 | 358 | 532 | 1.52e-17 | 85.5 |
| Msa0351330 | AT5G04110.2 | 29.121 | 182 | 105 | 4 | 160 | 324 | 359 | 533 | 1.66e-17 | 85.5 |
| Msa0351330 | AT2G46040.3 | 32.597 | 181 | 90 | 7 | 165 | 325 | 362 | 530 | 6.05e-14 | 74.3 |
| Msa0351330 | AT2G46040.1 | 32.597 | 181 | 90 | 7 | 165 | 325 | 362 | 530 | 6.05e-14 | 74.3 |
| Msa0351330 | AT2G46040.2 | 32.597 | 181 | 90 | 7 | 165 | 325 | 376 | 544 | 7.25e-14 | 74.3 |
Find 124 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGAAGTACTCATGGAAAA+AGG | 0.244769 | 3_1:+17905478 | None:intergenic |
| CATCCCTCAACAAGAATTTC+TGG | 0.247523 | 3_1:-17904980 | Msa0351330:CDS |
| ATTGAGAAATTCATTGAATT+GGG | 0.268674 | 3_1:-17905089 | Msa0351330:CDS |
| CTGAAATATATTGGCCGTTC+TGG | 0.274949 | 3_1:+17905455 | None:intergenic |
| TTCATTGAATTGGGGTTTGC+TGG | 0.296184 | 3_1:-17905080 | Msa0351330:CDS |
| TATCACTATCAGCACTTAAT+AGG | 0.298492 | 3_1:+17904853 | None:intergenic |
| CATCCCAAACATGTTGGTCC+TGG | 0.308074 | 3_1:+17904556 | None:intergenic |
| CAGATTCAAACCTCAATGTT+TGG | 0.315295 | 3_1:-17905301 | Msa0351330:CDS |
| GATTGAGAAATTCATTGAAT+TGG | 0.317579 | 3_1:-17905090 | Msa0351330:CDS |
| CGCTGGGACCTGCATGCTTC+GGG | 0.328924 | 3_1:+17905869 | None:intergenic |
| AAGCCCAGGACCAACATGTT+TGG | 0.344788 | 3_1:-17904560 | Msa0351330:CDS |
| TGAATTGGGGTTTGCTGGCA+TGG | 0.361365 | 3_1:-17905075 | Msa0351330:CDS |
| CTCGTGAGTTAATGTCCTTA+TGG | 0.364804 | 3_1:+17905421 | None:intergenic |
| AGCCCAGGACCAACATGTTT+GGG | 0.368080 | 3_1:-17904559 | Msa0351330:CDS |
| AGGAGAATGTTCAAGGAGTA+TGG | 0.375340 | 3_1:+17905388 | None:intergenic |
| TCGTGAGTTAATGTCCTTAT+GGG | 0.375965 | 3_1:+17905422 | None:intergenic |
| CGTTCTGGACTGAAATATAT+TGG | 0.377694 | 3_1:+17905446 | None:intergenic |
| GCTGGGGACTCTCCTGTGAT+AGG | 0.378845 | 3_1:-17905575 | Msa0351330:CDS |
| TCGCTGGGACCTGCATGCTT+CGG | 0.383524 | 3_1:+17905868 | None:intergenic |
| AGATTCAAACCTCAATGTTT+GGG | 0.386204 | 3_1:-17905300 | Msa0351330:CDS |
| TAGGTATTCCTGCTTCTACT+TGG | 0.392488 | 3_1:-17905556 | Msa0351330:CDS |
| GAGTGGGAATGGTGATCATT+GGG | 0.407252 | 3_1:-17904466 | Msa0351330:CDS |
| AAATTCTTGTTGAGGGATGC+TGG | 0.410628 | 3_1:+17904984 | None:intergenic |
| CACCTGAAGTCTTAGCCAAA+TGG | 0.412401 | 3_1:+17905797 | None:intergenic |
| GAAAGCGAGCTGAGCAGAAC+AGG | 0.412737 | 3_1:-17904881 | Msa0351330:CDS |
| ATGTGTAAGACAACATATAA+TGG | 0.417704 | 3_1:-17905144 | Msa0351330:CDS |
| TGGGGCAGTAACTATAATAA+TGG | 0.418652 | 3_1:-17904447 | Msa0351330:CDS |
| ATCTTCTCGATCCGAGCTAA+AGG | 0.426168 | 3_1:-17906912 | Msa0351330:intron |
| AATGTCCTTATGGGTCGTTC+TGG | 0.428131 | 3_1:+17905431 | None:intergenic |
| ATCCCAAACATGTTGGTCCT+GGG | 0.430334 | 3_1:+17904557 | None:intergenic |
| GATGCACCAGGGTGGGATCC+TGG | 0.430640 | 3_1:-17904381 | Msa0351330:CDS |
| ACCCATTTGGCTAAGACTTC+AGG | 0.445192 | 3_1:-17905799 | Msa0351330:intron |
| ATGGACATCCTAGAGGGGCT+GGG | 0.451477 | 3_1:-17905592 | Msa0351330:CDS |
| AGAGTGGGAATGGTGATCAT+TGG | 0.452381 | 3_1:-17904467 | Msa0351330:CDS |
| ATCATCTTCAGAAGTGCAAC+TGG | 0.452483 | 3_1:+17905529 | None:intergenic |
| TGATCAGCTCCAACTGATAC+AGG | 0.454985 | 3_1:+17905359 | None:intergenic |
| GATGGACATCCTAGAGGGGC+TGG | 0.457386 | 3_1:-17905593 | Msa0351330:CDS |
| CCCTCATCTGATTCAAGCCC+AGG | 0.459996 | 3_1:-17904574 | Msa0351330:CDS |
| GTTCCAGAAATTCTTGTTGA+GGG | 0.466806 | 3_1:+17904977 | None:intergenic |
| ACGCTAGATAATTCCATCTC+AGG | 0.474272 | 3_1:+17905227 | None:intergenic |
| TCTAGCGTTGATGATGAAGT+TGG | 0.475559 | 3_1:-17905212 | Msa0351330:CDS |
| ACCTGAAGTCTTAGCCAAAT+GGG | 0.476227 | 3_1:+17905798 | None:intergenic |
| ATCTTGCTCTAAAAGTAAGA+TGG | 0.482487 | 3_1:-17904352 | Msa0351330:CDS |
| AGCATCTCCTCAGCATCAAA+AGG | 0.482810 | 3_1:+17905910 | None:intergenic |
| CAATGAATTTCTCAATCCCA+AGG | 0.484694 | 3_1:+17905096 | None:intergenic |
| TGATGATTGCGACACCCATT+TGG | 0.484841 | 3_1:-17905812 | Msa0351330:CDS |
| CTGGAGCATTGTGATGCACC+AGG | 0.488708 | 3_1:-17904393 | Msa0351330:CDS |
| CATCCCCATCCCAAACATTG+AGG | 0.498295 | 3_1:+17905291 | None:intergenic |
| CAAACCTCAATGTTTGGGAT+GGG | 0.499908 | 3_1:-17905295 | Msa0351330:CDS |
| CTTGATATGCATCACTCTAG+TGG | 0.500136 | 3_1:-17904600 | Msa0351330:CDS |
| TGGGTGTCGCAATCATCATC+AGG | 0.505398 | 3_1:+17905817 | None:intergenic |
| GAATTGGGGTTTGCTGGCAT+GGG | 0.506212 | 3_1:-17905074 | Msa0351330:CDS |
| ATGACATGGGAGTTGCTTCA+AGG | 0.507286 | 3_1:-17904503 | Msa0351330:CDS |
| TGTTAACGGTAGAAAATCGC+TGG | 0.507449 | 3_1:+17905852 | None:intergenic |
| TCAAGCTGATGTTCCTGCAT+GGG | 0.508514 | 3_1:-17905336 | Msa0351330:CDS |
| TGGACATCCTAGAGGGGCTG+GGG | 0.508901 | 3_1:-17905591 | Msa0351330:CDS |
| GATAATTCCATCTCAGGCAT+AGG | 0.519691 | 3_1:+17905233 | None:intergenic |
| TTGAGAAATTCATTGAATTG+GGG | 0.521028 | 3_1:-17905088 | Msa0351330:CDS |
| GTTGATGATGAAGTTGGAAA+AGG | 0.521336 | 3_1:-17905206 | Msa0351330:CDS |
| TCAAACCTCAATGTTTGGGA+TGG | 0.524692 | 3_1:-17905296 | Msa0351330:CDS |
| TTAGAGCAAGATACAAAGCC+AGG | 0.525570 | 3_1:+17904363 | None:intergenic |
| ACCATTCCCACTCTTCACCT+TGG | 0.525767 | 3_1:+17904476 | None:intergenic |
| TGATGCTGAGGAGATGCTTG+AGG | 0.526167 | 3_1:-17905905 | Msa0351330:CDS |
| CCCTCTAGGATGTCCATCAC+AGG | 0.527463 | 3_1:+17905598 | None:intergenic |
| CCTCGCAAGCCTGTATCAGT+TGG | 0.530589 | 3_1:-17905368 | Msa0351330:CDS |
| TGACATGGGAGTTGCTTCAA+GGG | 0.532666 | 3_1:-17904502 | Msa0351330:CDS |
| CCCATGTCATGTGATGTGTA+TGG | 0.535319 | 3_1:+17904516 | None:intergenic |
| CAAGCTGATGTTCCTGCATG+GGG | 0.538451 | 3_1:-17905335 | Msa0351330:CDS |
| TATTATCCCTATGCCTGAGA+TGG | 0.538511 | 3_1:-17905240 | Msa0351330:CDS |
| CTCAGGCATAGGGATAATAC+AGG | 0.539552 | 3_1:+17905244 | None:intergenic |
| TGCTTTCTTGCAGGCAACAA+TGG | 0.540913 | 3_1:-17905944 | Msa0351330:intron |
| ATAATTCCATCTCAGGCATA+GGG | 0.542120 | 3_1:+17905234 | None:intergenic |
| AAACCTCAATGTTTGGGATG+GGG | 0.542867 | 3_1:-17905294 | Msa0351330:CDS |
| GGAGAGTCCCCAGCCCCTCT+AGG | 0.543130 | 3_1:+17905584 | None:intergenic |
| ACCAAGGTGAAGAGTGGGAA+TGG | 0.543330 | 3_1:-17904477 | Msa0351330:CDS |
| TTCAAACACCCGAAGCATGC+AGG | 0.544378 | 3_1:-17905877 | Msa0351330:CDS |
| GCTTGCGAGGAGAATGTTCA+AGG | 0.553211 | 3_1:+17905381 | None:intergenic |
| TCAGTCCAGAACGACCCATA+AGG | 0.556681 | 3_1:-17905436 | Msa0351330:CDS |
| AGTTCCAGAAATTCTTGTTG+AGG | 0.557435 | 3_1:+17904976 | None:intergenic |
| ATCAAGCTGATGTTCCTGCA+TGG | 0.557524 | 3_1:-17905337 | Msa0351330:CDS |
| GAAGCAGGAATACCTATCAC+AGG | 0.558967 | 3_1:+17905563 | None:intergenic |
| GTAAGCAATGGTTACAGCCA+AGG | 0.561471 | 3_1:-17904423 | Msa0351330:CDS |
| GTTCAAGGAGTATGGAATAG+AGG | 0.561760 | 3_1:+17905396 | None:intergenic |
| TATAATAATGGAGTAAGCAA+TGG | 0.563529 | 3_1:-17904435 | Msa0351330:CDS |
| CTGGTGGGCCAAGTAGAAGC+AGG | 0.570184 | 3_1:+17905548 | None:intergenic |
| CACTATCAGCACTTAATAGG+TGG | 0.573148 | 3_1:+17904856 | None:intergenic |
| TTACAGCCAAGGGTATGTGC+TGG | 0.575897 | 3_1:-17904412 | Msa0351330:CDS |
| TCCATACACATCACATGACA+TGG | 0.582605 | 3_1:-17904517 | Msa0351330:CDS |
| CTTGCTGTTGAAACCTGTGA+TGG | 0.582868 | 3_1:-17905611 | Msa0351330:CDS |
| AATGCTCCAGCACATACCCT+TGG | 0.585409 | 3_1:+17904406 | None:intergenic |
| AGGGAGACCAAGGTGAAGAG+TGG | 0.588865 | 3_1:-17904483 | Msa0351330:CDS |
| ATCTTCAGAAGTGCAACTGG+TGG | 0.589388 | 3_1:+17905532 | None:intergenic |
| TCTTCTATCATGCTACATGT+AGG | 0.594709 | 3_1:+17904321 | None:intergenic |
| CCTGTGATGGACATCCTAGA+GGG | 0.599466 | 3_1:-17905598 | Msa0351330:CDS |
| GGGAGACCAAGGTGAAGAGT+GGG | 0.600028 | 3_1:-17904482 | Msa0351330:CDS |
| CTGATAGTGATAATGATGAA+TGG | 0.603537 | 3_1:-17904842 | Msa0351330:CDS |
| TCCTGGGCTTGAATCAGATG+AGG | 0.606024 | 3_1:+17904573 | None:intergenic |
| CCTGGGCTTGAATCAGATGA+GGG | 0.606854 | 3_1:+17904574 | None:intergenic |
| AATGAATTTCTCAATCCCAA+GGG | 0.607074 | 3_1:+17905097 | None:intergenic |
| TAAGCAATGGTTACAGCCAA+GGG | 0.614655 | 3_1:-17904422 | Msa0351330:CDS |
| TTAGCTCGGATCGAGAAGAT+CGG | 0.616739 | 3_1:+17906915 | None:intergenic |
| GATGTATAGGCTGTTCTGAA+CGG | 0.621550 | 3_1:+17905504 | None:intergenic |
| GATTGTAGCTGCGAGGACAG+TGG | 0.623911 | 3_1:-17905176 | Msa0351330:CDS |
| AGTTGCTTCAAGGGAGACCA+AGG | 0.631504 | 3_1:-17904493 | Msa0351330:CDS |
| CCAACTGATACAGGCTTGCG+AGG | 0.632606 | 3_1:+17905368 | None:intergenic |
| CGGATCGAGAAGATCGGAGA+CGG | 0.634591 | 3_1:+17906921 | None:intergenic |
| TCTTCAGAAGTGCAACTGGT+GGG | 0.643393 | 3_1:+17905533 | None:intergenic |
| GCATTGTGATGCACCAGGGT+GGG | 0.646215 | 3_1:-17904388 | Msa0351330:CDS |
| GTTAACGGTAGAAAATCGCT+GGG | 0.649982 | 3_1:+17905853 | None:intergenic |
| ACAAAGCCAGGATCCCACCC+TGG | 0.650732 | 3_1:+17904375 | None:intergenic |
| TACATGTAGCATGATAGAAG+AGG | 0.651894 | 3_1:-17904319 | Msa0351330:CDS |
| ATGAGTACTTCAGTCCAGAA+CGG | 0.667987 | 3_1:-17905469 | Msa0351330:intron |
| ACCTGTGATGGACATCCTAG+AGG | 0.674785 | 3_1:-17905599 | Msa0351330:CDS |
| CATAAGGACATTAACTCACG+AGG | 0.675682 | 3_1:-17905420 | Msa0351330:CDS |
| TGGAGCATTGTGATGCACCA+GGG | 0.681363 | 3_1:-17904392 | Msa0351330:CDS |
| CTGGGCTTGAATCAGATGAG+GGG | 0.684489 | 3_1:+17904575 | None:intergenic |
| AGTGGGAATGGTGATCATTG+GGG | 0.687140 | 3_1:-17904465 | Msa0351330:CDS |
| CCATACACATCACATGACAT+GGG | 0.689211 | 3_1:-17904516 | Msa0351330:CDS |
| AGCATTGTGATGCACCAGGG+TGG | 0.699405 | 3_1:-17904389 | Msa0351330:CDS |
| CTGTGATGGACATCCTAGAG+GGG | 0.704316 | 3_1:-17905597 | Msa0351330:CDS |
| AGTGATAATGATGAATGGCA+AGG | 0.715180 | 3_1:-17904837 | Msa0351330:CDS |
| ATAGAGGAAGGATATGCACA+AGG | 0.716188 | 3_1:-17905656 | Msa0351330:intron |
| AAGAACTGATTGTAGCTGCG+AGG | 0.720002 | 3_1:-17905183 | Msa0351330:CDS |
| GAGGAAGGATATGCACAAGG+TGG | 0.730040 | 3_1:-17905653 | Msa0351330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTCTTTAATTGATTT+GGG | - | chr3_1:17904744-17904763 | Msa0351330:intron | 10.0% |
| !!! | TTGTTTTATTGAAATTTATT+TGG | - | chr3_1:17904977-17904996 | Msa0351330:CDS | 10.0% |
| !!! | TGTTTTATTGAAATTTATTT+GGG | - | chr3_1:17904978-17904997 | Msa0351330:CDS | 10.0% |
| !!! | TTTTTTTGAAATTTATTTTC+TGG | - | chr3_1:17905203-17905222 | Msa0351330:CDS | 10.0% |
| !!! | ATTTTATTTATTTTTAGGGT+TGG | + | chr3_1:17904489-17904508 | None:intergenic | 15.0% |
| !!! | GTGGATTTTATTTATTTTTA+GGG | + | chr3_1:17904493-17904512 | None:intergenic | 15.0% |
| !!! | CAATTTTTCTTTAATTGATT+TGG | - | chr3_1:17904743-17904762 | Msa0351330:intron | 15.0% |
| !!! | GTTTTATTGAAATTTATTTG+GGG | - | chr3_1:17904979-17904998 | Msa0351330:CDS | 15.0% |
| !!! | TTTTTATTATACCTTAAACA+CGG | + | chr3_1:17905087-17905106 | None:intergenic | 15.0% |
| !!! | TTAAAAACCATTTTTTTTTG+TGG | - | chr3_1:17905152-17905171 | Msa0351330:CDS | 15.0% |
| !!! | TAAAAACCATTTTTTTTTGT+GGG | - | chr3_1:17905153-17905172 | Msa0351330:CDS | 15.0% |
| !!! | GGTGGATTTTATTTATTTTT+AGG | + | chr3_1:17904494-17904513 | None:intergenic | 20.0% |
| !! | AAATTGAAGGAAAAAGAAAA+GGG | + | chr3_1:17904569-17904588 | None:intergenic | 20.0% |
| !!! | TGTTCGATTTGAAAAAAATT+AGG | - | chr3_1:17904925-17904944 | Msa0351330:CDS | 20.0% |
| !!! | GTTCGATTTGAAAAAAATTA+GGG | - | chr3_1:17904926-17904945 | Msa0351330:CDS | 20.0% |
| !! | ATTTGAAAAAAATTAGGGTT+AGG | - | chr3_1:17904931-17904950 | Msa0351330:CDS | 20.0% |
| !! | TTTGAAAAAAATTAGGGTTA+GGG | - | chr3_1:17904932-17904951 | Msa0351330:CDS | 20.0% |
| !!! | TATTTTCTGGTTAAAAGTTT+TGG | - | chr3_1:17905216-17905235 | Msa0351330:CDS | 20.0% |
| !! | ACTATGTAATATACATTTCA+AGG | - | chr3_1:17905893-17905912 | Msa0351330:CDS | 20.0% |
| !! | AAAAAACTATTAAAAACCCT+TGG | - | chr3_1:17906516-17906535 | Msa0351330:intron | 20.0% |
| !! | AAAAACTATTAAAAACCCTT+GGG | - | chr3_1:17906517-17906536 | Msa0351330:intron | 20.0% |
| !! | ATTGAGAAATTCATTGAATT+GGG | - | chr3_1:17906540-17906559 | Msa0351330:intron | 20.0% |
| !!! | ATTTTTGAGCTTGTGAATAT+AGG | + | chr3_1:17904298-17904317 | None:intergenic | 25.0% |
| ! | AGAGATATATGAAGAGAAAA+AGG | + | chr3_1:17904392-17904411 | None:intergenic | 25.0% |
| ! | GAAATTGAAGGAAAAAGAAA+AGG | + | chr3_1:17904570-17904589 | None:intergenic | 25.0% |
| ! | AAAAATTGAAACCTTTAGCT+CGG | + | chr3_1:17904731-17904750 | None:intergenic | 25.0% |
| !! | TTTTCGTTCGAATTTTTGTT+TGG | - | chr3_1:17904838-17904857 | Msa0351330:CDS | 25.0% |
| ! | TTGTATAATTACGATTCTCT+TGG | - | chr3_1:17905016-17905035 | Msa0351330:intron | 25.0% |
| ! | TAATTGCAAATTGCTGAATT+TGG | + | chr3_1:17905052-17905071 | None:intergenic | 25.0% |
| ! | ATAGTACCCACAAAAAAAAA+TGG | + | chr3_1:17905162-17905181 | None:intergenic | 25.0% |
| !!! | TGCAAAATATCTTACTTTTG+AGG | - | chr3_1:17905465-17905484 | Msa0351330:intron | 25.0% |
| ! | ATGTGTAAGACAACATATAA+TGG | - | chr3_1:17906485-17906504 | Msa0351330:intron | 25.0% |
| ! | GATTGAGAAATTCATTGAAT+TGG | - | chr3_1:17906539-17906558 | Msa0351330:intron | 25.0% |
| ! | TTGAGAAATTCATTGAATTG+GGG | - | chr3_1:17906541-17906560 | Msa0351330:intron | 25.0% |
| ! | GATGAAAATTGTGATGTTAA+TGG | - | chr3_1:17906954-17906973 | Msa0351330:intron | 25.0% |
| !! | TATAATAATGGAGTAAGCAA+TGG | - | chr3_1:17907194-17907213 | Msa0351330:intron | 25.0% |
| TGTGGAAAAATAAACGTGTT+TGG | + | chr3_1:17904446-17904465 | None:intergenic | 30.0% | |
| GAAATTGAAGGTGAAATTGA+AGG | + | chr3_1:17904582-17904601 | None:intergenic | 30.0% | |
| AAGAAAGGAGAAGAAATTGA+AGG | + | chr3_1:17904594-17904613 | None:intergenic | 30.0% | |
| TATCAAAGGATTGAATCGAT+CGG | + | chr3_1:17904617-17904636 | None:intergenic | 30.0% | |
| AGAATTTCACGATCTATCAA+AGG | + | chr3_1:17904631-17904650 | None:intergenic | 30.0% | |
| GAATCGAATCGAACAAAATT+GGG | + | chr3_1:17904666-17904685 | None:intergenic | 30.0% | |
| TGAATCGAATCGAACAAAAT+TGG | + | chr3_1:17904667-17904686 | None:intergenic | 30.0% | |
| ! | ATTCACGTTTTCGGTTTTTA+GGG | - | chr3_1:17904682-17904701 | Msa0351330:intron | 30.0% |
| !!! | TCGATTTGTTGTTTTCGATT+TGG | - | chr3_1:17904785-17904804 | Msa0351330:intron | 30.0% |
| !!! | CGATTTGTTGTTTTCGATTT+GGG | - | chr3_1:17904786-17904805 | Msa0351330:intron | 30.0% |
| !!! | GATTTGTTGTTTTCGATTTG+GGG | - | chr3_1:17904787-17904806 | Msa0351330:intron | 30.0% |
| GTTGTAATTGTTCGTCAATT+CGG | - | chr3_1:17904885-17904904 | Msa0351330:CDS | 30.0% | |
| !!! | TAAAAGTTTTGGAAGTGATG+TGG | - | chr3_1:17905227-17905246 | Msa0351330:CDS | 30.0% |
| CATTGTATCATCATCATAGA+AGG | + | chr3_1:17905320-17905339 | None:intergenic | 30.0% | |
| TGAAGTCAGAACTTAACATA+AGG | - | chr3_1:17905388-17905407 | Msa0351330:CDS | 30.0% | |
| GAAGTCAGAACTTAACATAA+GGG | - | chr3_1:17905389-17905408 | Msa0351330:CDS | 30.0% | |
| TTTATTGAATGCTTTCTTGC+AGG | - | chr3_1:17905676-17905695 | Msa0351330:intron | 30.0% | |
| GGAAAAACAGATTCTGTTAA+CGG | + | chr3_1:17905794-17905813 | None:intergenic | 30.0% | |
| ! | GTTTTTAATCTTGTGCAGTT+TGG | - | chr3_1:17905863-17905882 | Msa0351330:CDS | 30.0% |
| GTCTACATTGTAATTCATAG+AGG | - | chr3_1:17905957-17905976 | Msa0351330:intron | 30.0% | |
| ACATTGTAATTCATAGAGGA+AGG | - | chr3_1:17905961-17905980 | Msa0351330:intron | 30.0% | |
| AGATTCAAACCTCAATGTTT+GGG | - | chr3_1:17906329-17906348 | Msa0351330:intron | 30.0% | |
| TGAAGCTGAAAAAAGAATGA+TGG | - | chr3_1:17906359-17906378 | Msa0351330:intron | 30.0% | |
| GAAGCTGAAAAAAGAATGAT+GGG | - | chr3_1:17906360-17906379 | Msa0351330:intron | 30.0% | |
| AAGCTGAAAAAAGAATGATG+GGG | - | chr3_1:17906361-17906380 | Msa0351330:intron | 30.0% | |
| AATGAATTTCTCAATCCCAA+GGG | + | chr3_1:17906535-17906554 | None:intergenic | 30.0% | |
| AGATGAACATCTATTTCACA+AGG | - | chr3_1:17906608-17906627 | Msa0351330:intron | 30.0% | |
| TATCACTATCAGCACTTAAT+AGG | + | chr3_1:17906779-17906798 | None:intergenic | 30.0% | |
| ! | CTGATAGTGATAATGATGAA+TGG | - | chr3_1:17906787-17906806 | Msa0351330:intron | 30.0% |
| CAAGTATCATCTTCATAGAT+GGG | + | chr3_1:17906876-17906895 | None:intergenic | 30.0% | |
| ACAAGTATCATCTTCATAGA+TGG | + | chr3_1:17906877-17906896 | None:intergenic | 30.0% | |
| GAATATTAGATCATACCAAG+AGG | - | chr3_1:17906976-17906995 | Msa0351330:intron | 30.0% | |
| !! | ATCTTGCTCTAAAAGTAAGA+TGG | - | chr3_1:17907277-17907296 | Msa0351330:intron | 30.0% |
| GAATATAGGTGATTTACACG+TGG | + | chr3_1:17904284-17904303 | None:intergenic | 35.0% | |
| GAAGAAAGGGGAAAAAACTA+GGG | + | chr3_1:17904520-17904539 | None:intergenic | 35.0% | |
| AGAAGAAAGGGGAAAAAACT+AGG | + | chr3_1:17904521-17904540 | None:intergenic | 35.0% | |
| !! | TTCGATTCGATTCACGTTTT+CGG | - | chr3_1:17904673-17904692 | Msa0351330:intron | 35.0% |
| ! | GATTCACGTTTTCGGTTTTT+AGG | - | chr3_1:17904681-17904700 | Msa0351330:intron | 35.0% |
| !! | TTTTCCACGGGTTTGATTTT+TGG | - | chr3_1:17904813-17904832 | Msa0351330:intron | 35.0% |
| AAATCCAAAAATCAAACCCG+TGG | + | chr3_1:17904820-17904839 | None:intergenic | 35.0% | |
| ATCATCATCATAGAAGGAGT+GGG | + | chr3_1:17905314-17905333 | None:intergenic | 35.0% | |
| TATCATCATCATAGAAGGAG+TGG | + | chr3_1:17905315-17905334 | None:intergenic | 35.0% | |
| ! | TTTGTCATGCATGTTGATGA+TGG | - | chr3_1:17905492-17905511 | Msa0351330:CDS | 35.0% |
| !! | ATGTTGATGATGGTTATGAG+TGG | - | chr3_1:17905502-17905521 | Msa0351330:CDS | 35.0% |
| AACGGAAAACACTATGAATG+AGG | + | chr3_1:17905582-17905601 | None:intergenic | 35.0% | |
| AAGTCGATGAGCTATCAAAT+TGG | - | chr3_1:17905603-17905622 | Msa0351330:CDS | 35.0% | |
| TGGAAAAAGGGAAGATGTAT+AGG | + | chr3_1:17906141-17906160 | None:intergenic | 35.0% | |
| ! | CTGAAGTACTCATGGAAAAA+GGG | + | chr3_1:17906153-17906172 | None:intergenic | 35.0% |
| ! | ACTGAAGTACTCATGGAAAA+AGG | + | chr3_1:17906154-17906173 | None:intergenic | 35.0% |
| ! | CGTTCTGGACTGAAATATAT+TGG | + | chr3_1:17906186-17906205 | None:intergenic | 35.0% |
| TCGTGAGTTAATGTCCTTAT+GGG | + | chr3_1:17906210-17906229 | None:intergenic | 35.0% | |
| CAGATTCAAACCTCAATGTT+TGG | - | chr3_1:17906328-17906347 | Msa0351330:intron | 35.0% | |
| ATAATTCCATCTCAGGCATA+GGG | + | chr3_1:17906398-17906417 | None:intergenic | 35.0% | |
| !! | GTTGATGATGAAGTTGGAAA+AGG | - | chr3_1:17906423-17906442 | Msa0351330:intron | 35.0% |
| CAATGAATTTCTCAATCCCA+AGG | + | chr3_1:17906536-17906555 | None:intergenic | 35.0% | |
| GTTCCAGAAATTCTTGTTGA+GGG | + | chr3_1:17906655-17906674 | None:intergenic | 35.0% | |
| AGTTCCAGAAATTCTTGTTG+AGG | + | chr3_1:17906656-17906675 | None:intergenic | 35.0% | |
| ! | AGTGATAATGATGAATGGCA+AGG | - | chr3_1:17906792-17906811 | Msa0351330:intron | 35.0% |
| !! | CTTTTTCATCCCAAACATGT+TGG | + | chr3_1:17907082-17907101 | None:intergenic | 35.0% |
| TGGGGCAGTAACTATAATAA+TGG | - | chr3_1:17907182-17907201 | Msa0351330:intron | 35.0% | |
| TCTTCTATCATGCTACATGT+AGG | + | chr3_1:17907311-17907330 | None:intergenic | 35.0% | |
| TACATGTAGCATGATAGAAG+AGG | - | chr3_1:17907310-17907329 | Msa0351330:intron | 35.0% | |
| ! | AGCATGATAGAAGAGGTTTT+TGG | - | chr3_1:17907317-17907336 | Msa0351330:intron | 35.0% |
| !! | ATAGAAGAGGTTTTTGGAGA+TGG | - | chr3_1:17907323-17907342 | Msa0351330:intron | 35.0% |
| CGGTATATATGGGACAGTAT+GGG | + | chr3_1:17904354-17904373 | None:intergenic | 40.0% | |
| GATGTGAGTGCGGTATATAT+GGG | + | chr3_1:17904364-17904383 | None:intergenic | 40.0% | |
| AGATGTGAGTGCGGTATATA+TGG | + | chr3_1:17904365-17904384 | None:intergenic | 40.0% | |
| AAAGGATTGAGATGTGAGTG+CGG | + | chr3_1:17904374-17904393 | None:intergenic | 40.0% | |
| AAGGGGAAAAAACTAGGGTT+AGG | + | chr3_1:17904515-17904534 | None:intergenic | 40.0% | |
| GATTGAATCGATCGGAAGAA+AGG | + | chr3_1:17904609-17904628 | None:intergenic | 40.0% | |
| !! | CGATTTGGGGAAATTTTCCA+CGG | - | chr3_1:17904800-17904819 | Msa0351330:intron | 40.0% |
| ! | GATTTGGGGAAATTTTCCAC+GGG | - | chr3_1:17904801-17904820 | Msa0351330:intron | 40.0% |
| GGTTAGGGTTTCCTGAATTT+GGG | - | chr3_1:17904947-17904966 | Msa0351330:CDS | 40.0% | |
| GTTAGGGTTTCCTGAATTTG+GGG | - | chr3_1:17904948-17904967 | Msa0351330:CDS | 40.0% | |
| ACAAGAAAAGCCCCAAATTC+AGG | + | chr3_1:17904961-17904980 | None:intergenic | 40.0% | |
| TTTGACAGAGACCGTGTTTA+AGG | - | chr3_1:17905073-17905092 | Msa0351330:CDS | 40.0% | |
| TGCATGTCCTTTCATTGAGT+AGG | - | chr3_1:17905288-17905307 | Msa0351330:CDS | 40.0% | |
| !! | TGATAGCTCATCGACTTCAA+CGG | + | chr3_1:17905600-17905619 | None:intergenic | 40.0% |
| GTTAACGGTAGAAAATCGCT+GGG | + | chr3_1:17905779-17905798 | None:intergenic | 40.0% | |
| TGTTAACGGTAGAAAATCGC+TGG | + | chr3_1:17905780-17905799 | None:intergenic | 40.0% | |
| ACCTGAAGTCTTAGCCAAAT+GGG | + | chr3_1:17905834-17905853 | None:intergenic | 40.0% | |
| ATTTGGCTAAGACTTCAGGT+GGG | - | chr3_1:17905834-17905853 | Msa0351330:CDS | 40.0% | |
| ATAGAGGAAGGATATGCACA+AGG | - | chr3_1:17905973-17905992 | Msa0351330:intron | 40.0% | |
| TAGGTATTCCTGCTTCTACT+TGG | - | chr3_1:17906073-17906092 | Msa0351330:intron | 40.0% | |
| ! | ATCATCTTCAGAAGTGCAAC+TGG | + | chr3_1:17906103-17906122 | None:intergenic | 40.0% |
| ! | GATGTATAGGCTGTTCTGAA+CGG | + | chr3_1:17906128-17906147 | None:intergenic | 40.0% |
| ATGAGTACTTCAGTCCAGAA+CGG | - | chr3_1:17906160-17906179 | Msa0351330:intron | 40.0% | |
| CTGAAATATATTGGCCGTTC+TGG | + | chr3_1:17906177-17906196 | None:intergenic | 40.0% | |
| CTCGTGAGTTAATGTCCTTA+TGG | + | chr3_1:17906211-17906230 | None:intergenic | 40.0% | |
| CATAAGGACATTAACTCACG+AGG | - | chr3_1:17906209-17906228 | Msa0351330:intron | 40.0% | |
| ! | GTTCAAGGAGTATGGAATAG+AGG | + | chr3_1:17906236-17906255 | None:intergenic | 40.0% |
| AGGAGAATGTTCAAGGAGTA+TGG | + | chr3_1:17906244-17906263 | None:intergenic | 40.0% | |
| TCAAACCTCAATGTTTGGGA+TGG | - | chr3_1:17906333-17906352 | Msa0351330:intron | 40.0% | |
| ! | CAAACCTCAATGTTTGGGAT+GGG | - | chr3_1:17906334-17906353 | Msa0351330:intron | 40.0% |
| ! | AAACCTCAATGTTTGGGATG+GGG | - | chr3_1:17906335-17906354 | Msa0351330:intron | 40.0% |
| TATTATCCCTATGCCTGAGA+TGG | - | chr3_1:17906389-17906408 | Msa0351330:intron | 40.0% | |
| GATAATTCCATCTCAGGCAT+AGG | + | chr3_1:17906399-17906418 | None:intergenic | 40.0% | |
| ACGCTAGATAATTCCATCTC+AGG | + | chr3_1:17906405-17906424 | None:intergenic | 40.0% | |
| !! | TCTAGCGTTGATGATGAAGT+TGG | - | chr3_1:17906417-17906436 | Msa0351330:intron | 40.0% |
| TTCATTGAATTGGGGTTTGC+TGG | - | chr3_1:17906549-17906568 | Msa0351330:intron | 40.0% | |
| AAATTCTTGTTGAGGGATGC+TGG | + | chr3_1:17906648-17906667 | None:intergenic | 40.0% | |
| CATCCCTCAACAAGAATTTC+TGG | - | chr3_1:17906649-17906668 | Msa0351330:intron | 40.0% | |
| ! | TTTTCCCTCACGAAGCAAAA+AGG | - | chr3_1:17906689-17906708 | Msa0351330:intron | 40.0% |
| ! | ATCTCCTTTTTGCTTCGTGA+GGG | + | chr3_1:17906696-17906715 | None:intergenic | 40.0% |
| ! | TATCTCCTTTTTGCTTCGTG+AGG | + | chr3_1:17906697-17906716 | None:intergenic | 40.0% |
| CACTATCAGCACTTAATAGG+TGG | + | chr3_1:17906776-17906795 | None:intergenic | 40.0% | |
| AGAATCCTCATCTTCCTCAT+GGG | + | chr3_1:17906841-17906860 | None:intergenic | 40.0% | |
| CCTCTAAGTGATCATCATTG+CGG | + | chr3_1:17906911-17906930 | None:intergenic | 40.0% | |
| CATACCAAGAGGAACATTGA+TGG | - | chr3_1:17906987-17907006 | Msa0351330:intron | 40.0% | |
| ATCACCATCAATGTTCCTCT+TGG | + | chr3_1:17906994-17907013 | None:intergenic | 40.0% | |
| CTTGATATGCATCACTCTAG+TGG | - | chr3_1:17907029-17907048 | Msa0351330:intron | 40.0% | |
| TCCATACACATCACATGACA+TGG | - | chr3_1:17907112-17907131 | Msa0351330:intron | 40.0% | |
| CCATACACATCACATGACAT+GGG | - | chr3_1:17907113-17907132 | Msa0351330:intron | 40.0% | |
| TAAGCAATGGTTACAGCCAA+GGG | - | chr3_1:17907207-17907226 | Msa0351330:intron | 40.0% | |
| TTAGAGCAAGATACAAAGCC+AGG | + | chr3_1:17907269-17907288 | None:intergenic | 40.0% | |
| CAGTATGGGAATGAGGTTGT+GGG | + | chr3_1:17904340-17904359 | None:intergenic | 45.0% | |
| ACAGTATGGGAATGAGGTTG+TGG | + | chr3_1:17904341-17904360 | None:intergenic | 45.0% | |
| TATGGGACAGTATGGGAATG+AGG | + | chr3_1:17904347-17904366 | None:intergenic | 45.0% | |
| GCGGTATATATGGGACAGTA+TGG | + | chr3_1:17904355-17904374 | None:intergenic | 45.0% | |
| ! | AGAGAAACGACAGCGTTTTG+TGG | + | chr3_1:17904464-17904483 | None:intergenic | 45.0% |
| GGGAAAAAACTAGGGTTAGG+TGG | + | chr3_1:17904512-17904531 | None:intergenic | 45.0% | |
| GGAATCGAGATCTGAAAACG+CGG | + | chr3_1:17904548-17904567 | None:intergenic | 45.0% | |
| TTAGCTCGGATCGAGAAGAT+CGG | + | chr3_1:17904717-17904736 | None:intergenic | 45.0% | |
| ATCTTCTCGATCCGAGCTAA+AGG | - | chr3_1:17904717-17904736 | Msa0351330:intron | 45.0% | |
| GGGTTAGGGTTTCCTGAATT+TGG | - | chr3_1:17904946-17904965 | Msa0351330:CDS | 45.0% | |
| TGCTTTCTTGCAGGCAACAA+TGG | - | chr3_1:17905685-17905704 | Msa0351330:intron | 45.0% | |
| ! | GAAACGTCCTTTTGATGCTG+AGG | - | chr3_1:17905712-17905731 | Msa0351330:intron | 45.0% |
| AGCATCTCCTCAGCATCAAA+AGG | + | chr3_1:17905722-17905741 | None:intergenic | 45.0% | |
| TGATGATTGCGACACCCATT+TGG | - | chr3_1:17905817-17905836 | Msa0351330:CDS | 45.0% | |
| ACCCATTTGGCTAAGACTTC+AGG | - | chr3_1:17905830-17905849 | Msa0351330:CDS | 45.0% | |
| CACCTGAAGTCTTAGCCAAA+TGG | + | chr3_1:17905835-17905854 | None:intergenic | 45.0% | |
| CATTTGGCTAAGACTTCAGG+TGG | - | chr3_1:17905833-17905852 | Msa0351330:CDS | 45.0% | |
| !! | CTTGCTGTTGAAACCTGTGA+TGG | - | chr3_1:17906018-17906037 | Msa0351330:intron | 45.0% |
| GAAGCAGGAATACCTATCAC+AGG | + | chr3_1:17906069-17906088 | None:intergenic | 45.0% | |
| ! | TCTTCAGAAGTGCAACTGGT+GGG | + | chr3_1:17906099-17906118 | None:intergenic | 45.0% |
| ! | ATCTTCAGAAGTGCAACTGG+TGG | + | chr3_1:17906100-17906119 | None:intergenic | 45.0% |
| ! | GTTCTGGACTGAAGTACTCA+TGG | + | chr3_1:17906161-17906180 | None:intergenic | 45.0% |
| AATGTCCTTATGGGTCGTTC+TGG | + | chr3_1:17906201-17906220 | None:intergenic | 45.0% | |
| TGATCAGCTCCAACTGATAC+AGG | + | chr3_1:17906273-17906292 | None:intergenic | 45.0% | |
| ATCAAGCTGATGTTCCTGCA+TGG | - | chr3_1:17906292-17906311 | Msa0351330:intron | 45.0% | |
| TCAAGCTGATGTTCCTGCAT+GGG | - | chr3_1:17906293-17906312 | Msa0351330:intron | 45.0% | |
| ! | TTCCTGCATGGGGTTTTTCT+GGG | - | chr3_1:17906304-17906323 | Msa0351330:intron | 45.0% |
| CTCAGGCATAGGGATAATAC+AGG | + | chr3_1:17906388-17906407 | None:intergenic | 45.0% | |
| AAGAACTGATTGTAGCTGCG+AGG | - | chr3_1:17906446-17906465 | Msa0351330:intron | 45.0% | |
| GAGAACAAGTGGCTCAAAAG+TGG | - | chr3_1:17906577-17906596 | Msa0351330:intron | 45.0% | |
| GCTTCGTGAGGGAAAAACAA+TGG | + | chr3_1:17906685-17906704 | None:intergenic | 45.0% | |
| CAGAATCCTCATCTTCCTCA+TGG | + | chr3_1:17906842-17906861 | None:intergenic | 45.0% | |
| CCGCAATGATGATCACTTAG+AGG | - | chr3_1:17906908-17906927 | Msa0351330:intron | 45.0% | |
| ATCCCAAACATGTTGGTCCT+GGG | + | chr3_1:17907075-17907094 | None:intergenic | 45.0% | |
| CCCATGTCATGTGATGTGTA+TGG | + | chr3_1:17907116-17907135 | None:intergenic | 45.0% | |
| ATGACATGGGAGTTGCTTCA+AGG | - | chr3_1:17907126-17907145 | Msa0351330:intron | 45.0% | |
| TGACATGGGAGTTGCTTCAA+GGG | - | chr3_1:17907127-17907146 | Msa0351330:intron | 45.0% | |
| AGAGTGGGAATGGTGATCAT+TGG | - | chr3_1:17907162-17907181 | Msa0351330:intron | 45.0% | |
| GAGTGGGAATGGTGATCATT+GGG | - | chr3_1:17907163-17907182 | Msa0351330:intron | 45.0% | |
| AGTGGGAATGGTGATCATTG+GGG | - | chr3_1:17907164-17907183 | Msa0351330:intron | 45.0% | |
| GTAAGCAATGGTTACAGCCA+AGG | - | chr3_1:17907206-17907225 | Msa0351330:intron | 45.0% | |
| !! | AGGTTTTTGGAGATGGACGA+AGG | - | chr3_1:17907330-17907349 | Msa0351330:intron | 45.0% |
| AAACGCGGCGGAAGAAGAAA+GGG | + | chr3_1:17904533-17904552 | None:intergenic | 50.0% | |
| AAAACGCGGCGGAAGAAGAA+AGG | + | chr3_1:17904534-17904553 | None:intergenic | 50.0% | |
| ATCGAGATCTGAAAACGCGG+CGG | + | chr3_1:17904545-17904564 | None:intergenic | 50.0% | |
| GAGTGGGCCTACTCAATGAA+AGG | + | chr3_1:17905298-17905317 | None:intergenic | 50.0% | |
| TGATGCTGAGGAGATGCTTG+AGG | - | chr3_1:17905724-17905743 | Msa0351330:intron | 50.0% | |
| TTCAAACACCCGAAGCATGC+AGG | - | chr3_1:17905752-17905771 | Msa0351330:intron | 50.0% | |
| ! | TGGGTGTCGCAATCATCATC+AGG | + | chr3_1:17905815-17905834 | None:intergenic | 50.0% |
| GAGGAAGGATATGCACAAGG+TGG | - | chr3_1:17905976-17905995 | Msa0351330:intron | 50.0% | |
| !! | ACCTGTGATGGACATCCTAG+AGG | - | chr3_1:17906030-17906049 | Msa0351330:intron | 50.0% |
| !! | CCTGTGATGGACATCCTAGA+GGG | - | chr3_1:17906031-17906050 | Msa0351330:intron | 50.0% |
| !! | CTGTGATGGACATCCTAGAG+GGG | - | chr3_1:17906032-17906051 | Msa0351330:intron | 50.0% |
| TCAGTCCAGAACGACCCATA+AGG | - | chr3_1:17906193-17906212 | Msa0351330:intron | 50.0% | |
| GCTTGCGAGGAGAATGTTCA+AGG | + | chr3_1:17906251-17906270 | None:intergenic | 50.0% | |
| CAAGCTGATGTTCCTGCATG+GGG | - | chr3_1:17906294-17906313 | Msa0351330:intron | 50.0% | |
| ! | GTTCCTGCATGGGGTTTTTC+TGG | - | chr3_1:17906303-17906322 | Msa0351330:intron | 50.0% |
| CATCCCCATCCCAAACATTG+AGG | + | chr3_1:17906341-17906360 | None:intergenic | 50.0% | |
| !! | TGAATTGGGGTTTGCTGGCA+TGG | - | chr3_1:17906554-17906573 | Msa0351330:intron | 50.0% |
| !! | GAATTGGGGTTTGCTGGCAT+GGG | - | chr3_1:17906555-17906574 | Msa0351330:intron | 50.0% |
| CAATGAAGTTGCTGCCCATG+AGG | - | chr3_1:17906824-17906843 | Msa0351330:intron | 50.0% | |
| CTGGGCTTGAATCAGATGAG+GGG | + | chr3_1:17907057-17907076 | None:intergenic | 50.0% | |
| CCTGGGCTTGAATCAGATGA+GGG | + | chr3_1:17907058-17907077 | None:intergenic | 50.0% | |
| TCCTGGGCTTGAATCAGATG+AGG | + | chr3_1:17907059-17907078 | None:intergenic | 50.0% | |
| AAGCCCAGGACCAACATGTT+TGG | - | chr3_1:17907069-17907088 | Msa0351330:intron | 50.0% | |
| AGCCCAGGACCAACATGTTT+GGG | - | chr3_1:17907070-17907089 | Msa0351330:intron | 50.0% | |
| CATCCCAAACATGTTGGTCC+TGG | + | chr3_1:17907076-17907095 | None:intergenic | 50.0% | |
| AGTTGCTTCAAGGGAGACCA+AGG | - | chr3_1:17907136-17907155 | Msa0351330:intron | 50.0% | |
| ACCAAGGTGAAGAGTGGGAA+TGG | - | chr3_1:17907152-17907171 | Msa0351330:intron | 50.0% | |
| ACCATTCCCACTCTTCACCT+TGG | + | chr3_1:17907156-17907175 | None:intergenic | 50.0% | |
| ! | TTACAGCCAAGGGTATGTGC+TGG | - | chr3_1:17907217-17907236 | Msa0351330:intron | 50.0% |
| AATGCTCCAGCACATACCCT+TGG | + | chr3_1:17907226-17907245 | None:intergenic | 50.0% | |
| !! | TGGAGCATTGTGATGCACCA+GGG | - | chr3_1:17907237-17907256 | Msa0351330:intron | 50.0% |
| AACGCGGCGGAAGAAGAAAG+GGG | + | chr3_1:17904532-17904551 | None:intergenic | 55.0% | |
| CGGATCGAGAAGATCGGAGA+CGG | + | chr3_1:17904711-17904730 | None:intergenic | 55.0% | |
| !! | CCCTCTAGGATGTCCATCAC+AGG | + | chr3_1:17906034-17906053 | None:intergenic | 55.0% |
| ATGGACATCCTAGAGGGGCT+GGG | - | chr3_1:17906037-17906056 | Msa0351330:intron | 55.0% | |
| CCAACTGATACAGGCTTGCG+AGG | + | chr3_1:17906264-17906283 | None:intergenic | 55.0% | |
| CCTCGCAAGCCTGTATCAGT+TGG | - | chr3_1:17906261-17906280 | Msa0351330:intron | 55.0% | |
| GACCCAGAAAAACCCCATGC+AGG | + | chr3_1:17906309-17906328 | None:intergenic | 55.0% | |
| GATTGTAGCTGCGAGGACAG+TGG | - | chr3_1:17906453-17906472 | Msa0351330:intron | 55.0% | |
| TGCTGGCATGGGAGAACAAG+TGG | - | chr3_1:17906566-17906585 | Msa0351330:intron | 55.0% | |
| GAAAGCGAGCTGAGCAGAAC+AGG | - | chr3_1:17906748-17906767 | Msa0351330:intron | 55.0% | |
| TGCTGCCCATGAGGAAGATG+AGG | - | chr3_1:17906833-17906852 | Msa0351330:intron | 55.0% | |
| CCCTCATCTGATTCAAGCCC+AGG | - | chr3_1:17907055-17907074 | Msa0351330:intron | 55.0% | |
| AGGGAGACCAAGGTGAAGAG+TGG | - | chr3_1:17907146-17907165 | Msa0351330:intron | 55.0% | |
| GGGAGACCAAGGTGAAGAGT+GGG | - | chr3_1:17907147-17907166 | Msa0351330:intron | 55.0% | |
| !! | CTGGAGCATTGTGATGCACC+AGG | - | chr3_1:17907236-17907255 | Msa0351330:intron | 55.0% |
| AGCATTGTGATGCACCAGGG+TGG | - | chr3_1:17907240-17907259 | Msa0351330:intron | 55.0% | |
| GCATTGTGATGCACCAGGGT+GGG | - | chr3_1:17907241-17907260 | Msa0351330:intron | 55.0% | |
| TCGCTGGGACCTGCATGCTT+CGG | + | chr3_1:17905764-17905783 | None:intergenic | 60.0% | |
| GATGGACATCCTAGAGGGGC+TGG | - | chr3_1:17906036-17906055 | Msa0351330:intron | 60.0% | |
| TGGACATCCTAGAGGGGCTG+GGG | - | chr3_1:17906038-17906057 | Msa0351330:intron | 60.0% | |
| GCTGGGGACTCTCCTGTGAT+AGG | - | chr3_1:17906054-17906073 | Msa0351330:intron | 60.0% | |
| ! | CTGGTGGGCCAAGTAGAAGC+AGG | + | chr3_1:17906084-17906103 | None:intergenic | 60.0% |
| ACAAAGCCAGGATCCCACCC+TGG | + | chr3_1:17907257-17907276 | None:intergenic | 60.0% | |
| CGCTGGGACCTGCATGCTTC+GGG | + | chr3_1:17905763-17905782 | None:intergenic | 65.0% | |
| GATGCACCAGGGTGGGATCC+TGG | - | chr3_1:17907248-17907267 | Msa0351330:intron | 65.0% | |
| GGAGAGTCCCCAGCCCCTCT+AGG | + | chr3_1:17906048-17906067 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 17904278 | 17907373 | 17904278 | ID=Msa0351330;Name=Msa0351330 |
| chr3_1 | mRNA | 17904278 | 17907373 | 17904278 | ID=Msa0351330-mRNA-1;Parent=Msa0351330;Name=Msa0351330-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.33|0.14|0.85|0.33|0.28|7|0|450 |
| chr3_1 | exon | 17907365 | 17907373 | 17907365 | ID=Msa0351330-mRNA-1:exon:4269;Parent=Msa0351330-mRNA-1 |
| chr3_1 | exon | 17906913 | 17906948 | 17906913 | ID=Msa0351330-mRNA-1:exon:4268;Parent=Msa0351330-mRNA-1 |
| chr3_1 | exon | 17905800 | 17905953 | 17905800 | ID=Msa0351330-mRNA-1:exon:4267;Parent=Msa0351330-mRNA-1 |
| chr3_1 | exon | 17905488 | 17905674 | 17905488 | ID=Msa0351330-mRNA-1:exon:4266;Parent=Msa0351330-mRNA-1 |
| chr3_1 | exon | 17905067 | 17905478 | 17905067 | ID=Msa0351330-mRNA-1:exon:4265;Parent=Msa0351330-mRNA-1 |
| chr3_1 | exon | 17904821 | 17905021 | 17904821 | ID=Msa0351330-mRNA-1:exon:4264;Parent=Msa0351330-mRNA-1 |
| chr3_1 | exon | 17904278 | 17904631 | 17904278 | ID=Msa0351330-mRNA-1:exon:4263;Parent=Msa0351330-mRNA-1 |
| chr3_1 | CDS | 17907365 | 17907373 | 17907365 | ID=Msa0351330-mRNA-1:cds;Parent=Msa0351330-mRNA-1 |
| chr3_1 | CDS | 17906913 | 17906948 | 17906913 | ID=Msa0351330-mRNA-1:cds;Parent=Msa0351330-mRNA-1 |
| chr3_1 | CDS | 17905800 | 17905953 | 17905800 | ID=Msa0351330-mRNA-1:cds;Parent=Msa0351330-mRNA-1 |
| chr3_1 | CDS | 17905488 | 17905674 | 17905488 | ID=Msa0351330-mRNA-1:cds;Parent=Msa0351330-mRNA-1 |
| chr3_1 | CDS | 17905067 | 17905478 | 17905067 | ID=Msa0351330-mRNA-1:cds;Parent=Msa0351330-mRNA-1 |
| chr3_1 | CDS | 17904821 | 17905021 | 17904821 | ID=Msa0351330-mRNA-1:cds;Parent=Msa0351330-mRNA-1 |
| chr3_1 | CDS | 17904278 | 17904631 | 17904278 | ID=Msa0351330-mRNA-1:cds;Parent=Msa0351330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
