Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843950 | XP_003613392.1 | 74.510 | 102 | 17 | 2 | 1 | 94 | 1 | 101 | 5.60e-37 | 143 |
| Msa0843950 | XP_003613392.1 | 94.624 | 186 | 10 | 0 | 74 | 259 | 137 | 322 | 5.18e-126 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843950 | sp|O04529|2MMP_ARATH | 44.907 | 216 | 83 | 9 | 73 | 258 | 117 | 326 | 3.05e-44 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843950 | G7K5I7 | 74.510 | 102 | 17 | 2 | 1 | 94 | 1 | 101 | 2.68e-37 | 143 |
| Msa0843950 | G7K5I7 | 94.624 | 186 | 10 | 0 | 74 | 259 | 137 | 322 | 2.47e-126 | 370 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014280 | Msa0843950 | 0.818689 | 1.719747e-52 | -8.615850e-47 |
| Msa0031410 | Msa0843950 | 0.803985 | 2.684396e-49 | -8.615850e-47 |
| Msa0078210 | Msa0843950 | 0.809175 | 2.154799e-50 | -8.615850e-47 |
| Msa0107830 | Msa0843950 | 0.834929 | 2.255899e-56 | -8.615850e-47 |
| Msa0603300 | Msa0843950 | 0.810250 | 1.265718e-50 | -8.615850e-47 |
| Msa0619030 | Msa0843950 | -0.809229 | 2.098123e-50 | -8.615850e-47 |
| Msa0631130 | Msa0843950 | 0.807275 | 5.472831e-50 | -8.615850e-47 |
| Msa0652590 | Msa0843950 | 0.817423 | 3.323238e-52 | -8.615850e-47 |
| Msa0657340 | Msa0843950 | 0.836376 | 9.701987e-57 | -8.615850e-47 |
| Msa0669350 | Msa0843950 | 0.820106 | 8.170695e-53 | -8.615850e-47 |
| Msa0699170 | Msa0843950 | 0.801187 | 1.013263e-48 | -8.615850e-47 |
| Msa0701430 | Msa0843950 | 0.826540 | 2.565236e-54 | -8.615850e-47 |
| Msa0704560 | Msa0843950 | 0.812999 | 3.195051e-51 | -8.615850e-47 |
| Msa0716620 | Msa0843950 | 0.806842 | 6.758968e-50 | -8.615850e-47 |
| Msa0723770 | Msa0843950 | 0.851247 | 1.005007e-60 | -8.615850e-47 |
| Msa0731580 | Msa0843950 | 0.840180 | 1.015640e-57 | -8.615850e-47 |
| Msa0738680 | Msa0843950 | 0.801799 | 7.593270e-49 | -8.615850e-47 |
| Msa0744550 | Msa0843950 | 0.808510 | 2.989341e-50 | -8.615850e-47 |
| Msa0744710 | Msa0843950 | 0.836859 | 7.311260e-57 | -8.615850e-47 |
| Msa0750830 | Msa0843950 | 0.803481 | 3.414664e-49 | -8.615850e-47 |
| Msa0758520 | Msa0843950 | 0.814994 | 1.160373e-51 | -8.615850e-47 |
| Msa0758570 | Msa0843950 | 0.808654 | 2.784696e-50 | -8.615850e-47 |
| Msa0765140 | Msa0843950 | 0.806176 | 9.342790e-50 | -8.615850e-47 |
| Msa0771810 | Msa0843950 | 0.827573 | 1.451751e-54 | -8.615850e-47 |
| Msa0789780 | Msa0843950 | 0.818642 | 1.761835e-52 | -8.615850e-47 |
| Msa0794200 | Msa0843950 | 0.830616 | 2.656382e-55 | -8.615850e-47 |
| Msa0795320 | Msa0843950 | 0.819140 | 1.358064e-52 | -8.615850e-47 |
| Msa0809920 | Msa0843950 | 0.825114 | 5.591282e-54 | -8.615850e-47 |
| Msa0826240 | Msa0843950 | 0.839119 | 1.916812e-57 | -8.615850e-47 |
| Msa0838870 | Msa0843950 | 0.819807 | 9.568345e-53 | -8.615850e-47 |
| Msa0129770 | Msa0843950 | 0.807702 | 4.442006e-50 | -8.615850e-47 |
| Msa0143640 | Msa0843950 | 0.822629 | 2.138182e-53 | -8.615850e-47 |
| Msa0150620 | Msa0843950 | 0.804365 | 2.237321e-49 | -8.615850e-47 |
| Msa0161230 | Msa0843950 | 0.816476 | 5.422259e-52 | -8.615850e-47 |
| Msa0185040 | Msa0843950 | 0.806039 | 9.982006e-50 | -8.615850e-47 |
| Msa0185100 | Msa0843950 | 0.806779 | 6.969429e-50 | -8.615850e-47 |
| Msa0186240 | Msa0843950 | 0.827223 | 1.761405e-54 | -8.615850e-47 |
| Msa0204140 | Msa0843950 | 0.803077 | 4.141408e-49 | -8.615850e-47 |
| Msa0378320 | Msa0843950 | 0.816574 | 5.154205e-52 | -8.615850e-47 |
| Msa0383900 | Msa0843950 | 0.804613 | 1.986358e-49 | -8.615850e-47 |
| Msa0390160 | Msa0843950 | 0.810106 | 1.359567e-50 | -8.615850e-47 |
| Msa0390170 | Msa0843950 | 0.803672 | 3.117275e-49 | -8.615850e-47 |
| Msa0390200 | Msa0843950 | 0.835939 | 1.253130e-56 | -8.615850e-47 |
| Msa0393100 | Msa0843950 | 0.829573 | 4.773047e-55 | -8.615850e-47 |
| Msa0405200 | Msa0843950 | 0.804094 | 2.547660e-49 | -8.615850e-47 |
| Msa0405210 | Msa0843950 | 0.823086 | 1.674003e-53 | -8.615850e-47 |
| Msa0427660 | Msa0843950 | 0.822621 | 2.148231e-53 | -8.615850e-47 |
| Msa0434300 | Msa0843950 | 0.826294 | 2.935004e-54 | -8.615850e-47 |
| Msa0434400 | Msa0843950 | 0.820088 | 8.251463e-53 | -8.615850e-47 |
| Msa0449490 | Msa0843950 | 0.821263 | 4.430733e-53 | -8.615850e-47 |
| Msa0460600 | Msa0843950 | 0.811523 | 6.709536e-51 | -8.615850e-47 |
| Msa0478080 | Msa0843950 | 0.826902 | 2.102274e-54 | -8.615850e-47 |
| Msa0480540 | Msa0843950 | 0.808492 | 3.016714e-50 | -8.615850e-47 |
| Msa0242720 | Msa0843950 | 0.815534 | 8.801400e-52 | -8.615850e-47 |
| Msa0246140 | Msa0843950 | 0.814763 | 1.305601e-51 | -8.615850e-47 |
| Msa0257760 | Msa0843950 | 0.800581 | 1.347822e-48 | -8.615850e-47 |
| Msa0267700 | Msa0843950 | 0.816408 | 5.615010e-52 | -8.615850e-47 |
| Msa0267900 | Msa0843950 | 0.805493 | 1.299878e-49 | -8.615850e-47 |
| Msa0269710 | Msa0843950 | 0.800487 | 1.408357e-48 | -8.615850e-47 |
| Msa0271700 | Msa0843950 | 0.834830 | 2.388352e-56 | -8.615850e-47 |
| Msa0271720 | Msa0843950 | 0.829809 | 4.182501e-55 | -8.615850e-47 |
| Msa0273070 | Msa0843950 | 0.804776 | 1.836830e-49 | -8.615850e-47 |
| Msa0275730 | Msa0843950 | 0.811812 | 5.806312e-51 | -8.615850e-47 |
| Msa0284730 | Msa0843950 | 0.803227 | 3.854314e-49 | -8.615850e-47 |
| Msa0306310 | Msa0843950 | 0.806813 | 6.853906e-50 | -8.615850e-47 |
| Msa0310190 | Msa0843950 | 0.812280 | 4.590157e-51 | -8.615850e-47 |
| Msa0319680 | Msa0843950 | 0.817555 | 3.103553e-52 | -8.615850e-47 |
| Msa0320170 | Msa0843950 | 0.831241 | 1.866133e-55 | -8.615850e-47 |
| Msa0324810 | Msa0843950 | 0.809987 | 1.442135e-50 | -8.615850e-47 |
| Msa0340370 | Msa0843950 | 0.803731 | 3.030651e-49 | -8.615850e-47 |
| Msa0345890 | Msa0843950 | 0.850383 | 1.759447e-60 | -8.615850e-47 |
| Msa0345980 | Msa0843950 | 0.816882 | 4.397759e-52 | -8.615850e-47 |
| Msa0488580 | Msa0843950 | 0.819547 | 1.096667e-52 | -8.615850e-47 |
| Msa0490100 | Msa0843950 | 0.808641 | 2.803617e-50 | -8.615850e-47 |
| Msa0493870 | Msa0843950 | 0.818144 | 2.285290e-52 | -8.615850e-47 |
| Msa0497680 | Msa0843950 | 0.805632 | 1.215525e-49 | -8.615850e-47 |
| Msa0497690 | Msa0843950 | 0.844424 | 7.626614e-59 | -8.615850e-47 |
| Msa0510870 | Msa0843950 | 0.837723 | 4.392877e-57 | -8.615850e-47 |
| Msa0518490 | Msa0843950 | 0.805314 | 1.417507e-49 | -8.615850e-47 |
| Msa0522140 | Msa0843950 | 0.830207 | 3.344747e-55 | -8.615850e-47 |
| Msa0522170 | Msa0843950 | 0.831434 | 1.672947e-55 | -8.615850e-47 |
| Msa0534610 | Msa0843950 | 0.818077 | 2.365478e-52 | -8.615850e-47 |
| Msa0557240 | Msa0843950 | 0.810610 | 1.058298e-50 | -8.615850e-47 |
| Msa0561830 | Msa0843950 | 0.801210 | 1.002673e-48 | -8.615850e-47 |
| Msa0565120 | Msa0843950 | 0.805700 | 1.176131e-49 | -8.615850e-47 |
| Msa0565180 | Msa0843950 | 0.845321 | 4.369442e-59 | -8.615850e-47 |
| Msa0566530 | Msa0843950 | 0.833707 | 4.569333e-56 | -8.615850e-47 |
| Msa0580840 | Msa0843950 | 0.820808 | 5.638976e-53 | -8.615850e-47 |
| Msa0590810 | Msa0843950 | 0.820196 | 7.793156e-53 | -8.615850e-47 |
| Msa0843950 | Msa0850480 | 0.828360 | 9.388010e-55 | -8.615850e-47 |
| Msa0843950 | Msa0865830 | 0.805006 | 1.644323e-49 | -8.615850e-47 |
| Msa0843950 | Msa0874750 | 0.824337 | 8.525420e-54 | -8.615850e-47 |
| Msa0843950 | Msa0966580 | 0.801032 | 1.089992e-48 | -8.615850e-47 |
| Msa0843950 | Msa0976400 | 0.809922 | 1.489236e-50 | -8.615850e-47 |
| Msa0843950 | Msa1001120 | 0.809554 | 1.786647e-50 | -8.615850e-47 |
| Msa0843950 | Msa1003730 | 0.819625 | 1.052675e-52 | -8.615850e-47 |
| Msa0843950 | Msa1003920 | 0.836113 | 1.132098e-56 | -8.615850e-47 |
| Msa0843950 | Msa1026890 | 0.810885 | 9.226403e-51 | -8.615850e-47 |
| Msa0843950 | Msa1027910 | 0.800206 | 1.606634e-48 | -8.615850e-47 |
| Msa0843950 | Msa1030210 | 0.841852 | 3.696253e-58 | -8.615850e-47 |
| Msa0843950 | Msa1030240 | 0.808811 | 2.578397e-50 | -8.615850e-47 |
| Msa0843950 | Msa1035050 | 0.840837 | 6.836874e-58 | -8.615850e-47 |
| Msa0843950 | Msa1057400 | 0.809990 | 1.439453e-50 | -8.615850e-47 |
| Msa0843950 | Msa1061840 | 0.829339 | 5.439269e-55 | -8.615850e-47 |
| Msa0843950 | Msa1069250 | 0.839068 | 1.976896e-57 | -8.615850e-47 |
| Msa0843950 | Msa1071350 | 0.810678 | 1.022675e-50 | -8.615850e-47 |
| Msa0843950 | Msa1075090 | 0.857377 | 1.701437e-62 | -8.615850e-47 |
| Msa0843950 | Msa1077970 | 0.827391 | 1.605865e-54 | -8.615850e-47 |
| Msa0843950 | Msa1095590 | 0.831928 | 1.264226e-55 | -8.615850e-47 |
| Msa0843950 | Msa1102210 | 0.816186 | 6.296541e-52 | -8.615850e-47 |
| Msa0843950 | Msa1110900 | 0.813515 | 2.461614e-51 | -8.615850e-47 |
| Msa0843950 | Msa1111860 | 0.818017 | 2.440755e-52 | -8.615850e-47 |
| Msa0843950 | Msa1115980 | 0.843403 | 1.431472e-58 | -8.615850e-47 |
| Msa0843950 | Msa1120580 | 0.819112 | 1.377681e-52 | -8.615850e-47 |
| Msa0843950 | Msa1131120 | 0.821136 | 4.739276e-53 | -8.615850e-47 |
| Msa0843950 | Msa1137750 | 0.820018 | 8.562362e-53 | -8.615850e-47 |
| Msa0843950 | Msa1142390 | 0.811135 | 8.144456e-51 | -8.615850e-47 |
| Msa0843950 | Msa1157110 | 0.817305 | 3.533053e-52 | -8.615850e-47 |
| Msa0843950 | Msa1162430 | 0.810744 | 9.899945e-51 | -8.615850e-47 |
| Msa0843950 | Msa1174280 | 0.826864 | 2.146287e-54 | -8.615850e-47 |
| Msa0843950 | Msa1185270 | 0.811648 | 6.303424e-51 | -8.615850e-47 |
| Msa0843950 | Msa1202110 | 0.834984 | 2.183992e-56 | -8.615850e-47 |
| Msa0843950 | Msa1211610 | 0.837652 | 4.581192e-57 | -8.615850e-47 |
| Msa0843950 | Msa1239210 | 0.803919 | 2.769827e-49 | -8.615850e-47 |
| Msa0843950 | Msa1239940 | 0.807954 | 3.927694e-50 | -8.615850e-47 |
| Msa0843950 | Msa1254870 | 0.833419 | 5.391096e-56 | -8.615850e-47 |
| Msa0843950 | Msa1262540 | 0.805684 | 1.185530e-49 | -8.615850e-47 |
| Msa0843950 | Msa1299480 | 0.835955 | 1.241275e-56 | -8.615850e-47 |
| Msa0843950 | Msa1320160 | 0.816481 | 5.408553e-52 | -8.615850e-47 |
| Msa0843950 | Msa1328430 | 0.834746 | 2.507372e-56 | -8.615850e-47 |
| Msa0843950 | Msa1357570 | 0.815904 | 7.278012e-52 | -8.615850e-47 |
| Msa0843950 | Msa1382740 | 0.801741 | 7.803285e-49 | -8.615850e-47 |
| Msa0843950 | Msa1395250 | 0.802215 | 6.235822e-49 | -8.615850e-47 |
| Msa0843950 | Msa1398120 | 0.810988 | 8.764780e-51 | -8.615850e-47 |
| Msa0843950 | Msa1404050 | 0.801440 | 8.997427e-49 | -8.615850e-47 |
| Msa0843950 | Msa1405530 | 0.816825 | 4.530040e-52 | -8.615850e-47 |
| Msa0843950 | Msa1427000 | 0.819496 | 1.126679e-52 | -8.615850e-47 |
| Msa0843950 | Msa1438160 | 0.814007 | 1.917665e-51 | -8.615850e-47 |
| Msa0843950 | Msa1439780 | 0.813399 | 2.610319e-51 | -8.615850e-47 |
| Msa0843950 | Msa1459920 | 0.803315 | 3.696766e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843950 | MtrunA17_Chr5g0414641 | 94.624 | 186 | 10 | 0 | 74 | 259 | 137 | 322 | 4.76e-130 | 370 |
| Msa0843950 | MtrunA17_Chr5g0414641 | 74.510 | 102 | 17 | 2 | 1 | 94 | 1 | 101 | 5.15e-41 | 143 |
| Msa0843950 | MtrunA17_Chr8g0364281 | 43.256 | 215 | 88 | 6 | 73 | 258 | 156 | 365 | 5.80e-45 | 155 |
| Msa0843950 | MtrunA17_Chr5g0414891 | 43.750 | 208 | 89 | 7 | 74 | 258 | 126 | 328 | 1.90e-44 | 153 |
| Msa0843950 | MtrunA17_Chr5g0414657 | 39.130 | 207 | 104 | 8 | 65 | 255 | 112 | 312 | 6.75e-36 | 130 |
| Msa0843950 | MtrunA17_Chr5g0414821 | 36.364 | 220 | 119 | 8 | 51 | 259 | 147 | 356 | 2.67e-35 | 130 |
| Msa0843950 | MtrunA17_Chr5g0414791 | 38.235 | 204 | 107 | 8 | 66 | 259 | 139 | 333 | 1.35e-34 | 127 |
| Msa0843950 | MtrunA17_Chr8g0334661 | 35.468 | 203 | 111 | 5 | 74 | 258 | 109 | 309 | 4.82e-32 | 120 |
| Msa0843950 | MtrunA17_Chr5g0414661 | 33.803 | 213 | 114 | 7 | 66 | 259 | 84 | 288 | 2.66e-31 | 117 |
| Msa0843950 | MtrunA17_Chr5g0399301 | 36.548 | 197 | 109 | 7 | 74 | 258 | 123 | 315 | 7.90e-30 | 114 |
| Msa0843950 | MtrunA17_Chr5g0414771 | 36.364 | 209 | 102 | 9 | 66 | 255 | 56 | 252 | 1.12e-28 | 110 |
| Msa0843950 | MtrunA17_Chr5g0414654 | 36.735 | 196 | 94 | 8 | 73 | 259 | 103 | 277 | 1.39e-27 | 108 |
| Msa0843950 | MtrunA17_Chr5g0414831 | 37.405 | 131 | 69 | 4 | 125 | 242 | 1 | 131 | 1.08e-21 | 87.8 |
| Msa0843950 | MtrunA17_Chr6g0451671 | 27.111 | 225 | 119 | 9 | 68 | 255 | 113 | 329 | 1.18e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843950 | AT1G70170.1 | 44.907 | 216 | 83 | 9 | 73 | 258 | 117 | 326 | 3.10e-45 | 156 |
| Msa0843950 | AT1G59970.1 | 41.584 | 202 | 93 | 7 | 74 | 255 | 117 | 313 | 8.73e-42 | 146 |
| Msa0843950 | AT1G24140.1 | 38.249 | 217 | 98 | 7 | 73 | 258 | 120 | 331 | 2.81e-40 | 143 |
| Msa0843950 | AT2G45040.1 | 36.364 | 198 | 112 | 5 | 73 | 258 | 103 | 298 | 7.12e-30 | 115 |
| Msa0843950 | AT4G16640.1 | 36.408 | 206 | 100 | 10 | 73 | 258 | 127 | 321 | 4.76e-29 | 113 |
Find 50 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGGATTCAGGAAATTTA+TGG | 0.186644 | 5_4:-21883545 | Msa0843950:CDS |
| ATTGAGACAACATCGTTTAA+TGG | 0.186863 | 5_4:-21883857 | Msa0843950:CDS |
| TTCCTCCACCACGGTTTAAA+TGG | 0.210107 | 5_4:+21883998 | None:intergenic |
| TGATGATTTGCAAAGGATTC+AGG | 0.269973 | 5_4:-21883555 | Msa0843950:CDS |
| CATCAGGTTGGTCATTTACT+AGG | 0.272161 | 5_4:-21883656 | Msa0843950:CDS |
| AGTTATGCGTTTAAGATAGA+AGG | 0.301172 | 5_4:+21884852 | None:intergenic |
| GTTGGTGAAGTTGTTCTTCA+TGG | 0.302002 | 5_4:+21884030 | None:intergenic |
| GTTGGTCATTTACTAGGGTT+GGG | 0.310483 | 5_4:-21883650 | Msa0843950:CDS |
| GGTTGGTCATTTACTAGGGT+TGG | 0.365107 | 5_4:-21883651 | Msa0843950:CDS |
| CTAACTATTAATCCAATTGC+TGG | 0.408047 | 5_4:+21884886 | None:intergenic |
| CTTGAGTTTATTCCAGATGC+TGG | 0.411033 | 5_4:+21884813 | None:intergenic |
| TTCAACAAAGCTCTAGAGAT+TGG | 0.411452 | 5_4:-21884784 | Msa0843950:CDS |
| AATTGCTGGTGCAAAAGAAA+TGG | 0.419697 | 5_4:+21884900 | None:intergenic |
| TAATGTTGGCAGTGTATACT+TGG | 0.438145 | 5_4:-21883756 | Msa0843950:CDS |
| GTGGTTCCATTGATTATGTC+GGG | 0.454466 | 5_4:+21884055 | None:intergenic |
| GATGGAAAAGGTGGAACGGT+TGG | 0.463287 | 5_4:-21883803 | Msa0843950:CDS |
| GTTGGGGCATTCTTCTGTTG+AGG | 0.484015 | 5_4:-21883633 | Msa0843950:CDS |
| TAGTGAAAATGTTGTTAAAG+AGG | 0.489343 | 5_4:-21883708 | Msa0843950:CDS |
| TAAAGAGGATGATGTGGATC+TGG | 0.490948 | 5_4:-21883693 | Msa0843950:CDS |
| TAATACTAAGAGAAACATAT+AGG | 0.496205 | 5_4:+21884951 | None:intergenic |
| TCGTCTGTGACGTTATTCTC+TGG | 0.500385 | 5_4:+21883941 | None:intergenic |
| GGAAAAGGTGGAACGGTTGG+AGG | 0.500795 | 5_4:-21883800 | Msa0843950:CDS |
| TTGGTCATTTACTAGGGTTG+GGG | 0.511212 | 5_4:-21883649 | Msa0843950:CDS |
| GGGGCATTCTTCTGTTGAGG+AGG | 0.515125 | 5_4:-21883630 | Msa0843950:CDS |
| GTTATGCGTTTAAGATAGAA+GGG | 0.525080 | 5_4:+21884853 | None:intergenic |
| ATCAGGTTGGTCATTTACTA+GGG | 0.525281 | 5_4:-21883655 | Msa0843950:CDS |
| GAAGTTGTTCTTCATGGTGG+TGG | 0.525941 | 5_4:+21884036 | None:intergenic |
| TGGTGCAAAAGAAATGGATT+CGG | 0.529226 | 5_4:+21884906 | None:intergenic |
| ATAAACAATAGTGTTAATGT+TGG | 0.540054 | 5_4:-21883770 | Msa0843950:CDS |
| GGAATCTGTTGTGATGCATC+AGG | 0.540684 | 5_4:-21883672 | Msa0843950:CDS |
| GTCCATTTAAACCGTGGTGG+AGG | 0.548682 | 5_4:-21884000 | Msa0843950:CDS |
| TTCAAGACGCGTTTAACCGT+TGG | 0.554534 | 5_4:-21883904 | Msa0843950:CDS |
| ATGCAGTTGCATTTGACCAA+CGG | 0.555946 | 5_4:+21883888 | None:intergenic |
| GGTGTTCCCGACATAATCAA+TGG | 0.556418 | 5_4:-21884061 | Msa0843950:CDS |
| GGTGGTTCCATTGATTATGT+CGG | 0.558548 | 5_4:+21884054 | None:intergenic |
| TTGACGTTGGATGGAAAAGG+TGG | 0.581789 | 5_4:-21883812 | Msa0843950:CDS |
| TTCTCCACATTCCTCCACCA+CGG | 0.583327 | 5_4:+21883989 | None:intergenic |
| GCAAGAAAAGAAGATTGAGT+TGG | 0.588378 | 5_4:-21883585 | Msa0843950:CDS |
| TGTTGTTAAAGAGGATGATG+TGG | 0.602800 | 5_4:-21883699 | Msa0843950:CDS |
| TAAACCGTGGTGGAGGAATG+TGG | 0.614425 | 5_4:-21883993 | Msa0843950:CDS |
| ATTATTTCAAAGCCACGTTG+TGG | 0.619324 | 5_4:-21884082 | Msa0843950:intron |
| TGAATGATGATGATTTGCAA+AGG | 0.623412 | 5_4:-21883562 | Msa0843950:CDS |
| GGTGAAGTTGTTCTTCATGG+TGG | 0.629170 | 5_4:+21884033 | None:intergenic |
| CAAGTCCATTTAAACCGTGG+TGG | 0.655517 | 5_4:-21884003 | Msa0843950:CDS |
| TCTGTTGTGATGCATCAGGT+TGG | 0.665536 | 5_4:-21883668 | Msa0843950:CDS |
| CTTGGATGCAGATGAACAGT+GGG | 0.669119 | 5_4:-21883738 | Msa0843950:CDS |
| ACTTGGATGCAGATGAACAG+TGG | 0.694860 | 5_4:-21883739 | Msa0843950:CDS |
| AAACAAGTCCATTTAAACCG+TGG | 0.711128 | 5_4:-21884006 | Msa0843950:CDS |
| GTTGGATGGAAAAGGTGGAA+CGG | 0.714060 | 5_4:-21883807 | Msa0843950:CDS |
| ATGTCGGGAACACCACAACG+TGG | 0.747885 | 5_4:+21884070 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTTAAAAGTTATATTT+TGG | - | chr5_4:21884032-21884051 | Msa0843950:CDS | 10.0% |
| !!! | TAGTTTTAAAAGTTATATTT+TGG | - | chr5_4:21884032-21884051 | Msa0843950:CDS | 10.0% |
| !! | TTGTAAATATTCTTTCAAAT+CGG | + | chr5_4:21883767-21883786 | None:intergenic | 15.0% |
| !! | AAAGAATATTTACAATTCTT+CGG | - | chr5_4:21883772-21883791 | Msa0843950:CDS | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr5_4:21884009-21884028 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr5_4:21884008-21884027 | Msa0843950:CDS | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | - | chr5_4:21884135-21884154 | Msa0843950:intron | 15.0% |
| !! | TTGTAAATATTCTTTCAAAT+CGG | + | chr5_4:21883767-21883786 | None:intergenic | 15.0% |
| !! | AAAGAATATTTACAATTCTT+CGG | - | chr5_4:21883772-21883791 | Msa0843950:CDS | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr5_4:21884009-21884028 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr5_4:21884008-21884027 | Msa0843950:CDS | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | - | chr5_4:21884135-21884154 | Msa0843950:intron | 15.0% |
| !! | TAATACTAAGAGAAACATAT+AGG | + | chr5_4:21883557-21883576 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr5_4:21884018-21884037 | None:intergenic | 20.0% |
| !!! | CGTATCTAAATGATTTTTTT+TGG | + | chr5_4:21884208-21884227 | None:intergenic | 20.0% |
| !! | ATAAACAATAGTGTTAATGT+TGG | - | chr5_4:21884735-21884754 | Msa0843950:intron | 20.0% |
| !! | TAATACTAAGAGAAACATAT+AGG | + | chr5_4:21883557-21883576 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr5_4:21884018-21884037 | None:intergenic | 20.0% |
| !!! | CGTATCTAAATGATTTTTTT+TGG | + | chr5_4:21884208-21884227 | None:intergenic | 20.0% |
| !! | ATAAACAATAGTGTTAATGT+TGG | - | chr5_4:21884735-21884754 | Msa0843950:intron | 20.0% |
| ! | AATTTCAATCTCAATACTAC+AGG | - | chr5_4:21883880-21883899 | Msa0843950:CDS | 25.0% |
| ! | AATGATTAAGAGAAAGAGAA+TGG | - | chr5_4:21883975-21883994 | Msa0843950:CDS | 25.0% |
| !!! | CTAAATGATTTTTTTTGGAC+CGG | + | chr5_4:21884203-21884222 | None:intergenic | 25.0% |
| !!! | TTTAAATGGACTTGTTTTGT+TGG | + | chr5_4:21884496-21884515 | None:intergenic | 25.0% |
| !! | TCTTTAACAACATTTTCACT+AGG | + | chr5_4:21884798-21884817 | None:intergenic | 25.0% |
| ! | TAGTGAAAATGTTGTTAAAG+AGG | - | chr5_4:21884797-21884816 | Msa0843950:CDS | 25.0% |
| ! | AATTTCAATCTCAATACTAC+AGG | - | chr5_4:21883880-21883899 | Msa0843950:CDS | 25.0% |
| ! | AATGATTAAGAGAAAGAGAA+TGG | - | chr5_4:21883975-21883994 | Msa0843950:CDS | 25.0% |
| !!! | CTAAATGATTTTTTTTGGAC+CGG | + | chr5_4:21884203-21884222 | None:intergenic | 25.0% |
| !!! | TTTAAATGGACTTGTTTTGT+TGG | + | chr5_4:21884496-21884515 | None:intergenic | 25.0% |
| !! | TCTTTAACAACATTTTCACT+AGG | + | chr5_4:21884798-21884817 | None:intergenic | 25.0% |
| ! | TAGTGAAAATGTTGTTAAAG+AGG | - | chr5_4:21884797-21884816 | Msa0843950:CDS | 25.0% |
| CTAACTATTAATCCAATTGC+TGG | + | chr5_4:21883622-21883641 | None:intergenic | 30.0% | |
| ! | GTTATGCGTTTAAGATAGAA+GGG | + | chr5_4:21883655-21883674 | None:intergenic | 30.0% |
| ! | AGTTATGCGTTTAAGATAGA+AGG | + | chr5_4:21883656-21883675 | None:intergenic | 30.0% |
| ! | GTAAATTATTTTCCAGCATC+TGG | - | chr5_4:21883680-21883699 | Msa0843950:CDS | 30.0% |
| AATGCAAAGTTGAAGAGTTT+AGG | + | chr5_4:21883801-21883820 | None:intergenic | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr5_4:21883926-21883945 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr5_4:21883927-21883946 | Msa0843950:CDS | 30.0% |
| ATTGAGACAACATCGTTTAA+TGG | - | chr5_4:21884648-21884667 | Msa0843950:intron | 30.0% | |
| ! | TTCTTTTCTTGCAACACAAT+CGG | + | chr5_4:21884912-21884931 | None:intergenic | 30.0% |
| ! | TGAATGATGATGATTTGCAA+AGG | - | chr5_4:21884943-21884962 | Msa0843950:CDS | 30.0% |
| CAAAGGATTCAGGAAATTTA+TGG | - | chr5_4:21884960-21884979 | Msa0843950:CDS | 30.0% | |
| CTAACTATTAATCCAATTGC+TGG | + | chr5_4:21883622-21883641 | None:intergenic | 30.0% | |
| ! | GTTATGCGTTTAAGATAGAA+GGG | + | chr5_4:21883655-21883674 | None:intergenic | 30.0% |
| ! | AGTTATGCGTTTAAGATAGA+AGG | + | chr5_4:21883656-21883675 | None:intergenic | 30.0% |
| ! | GTAAATTATTTTCCAGCATC+TGG | - | chr5_4:21883680-21883699 | Msa0843950:CDS | 30.0% |
| AATGCAAAGTTGAAGAGTTT+AGG | + | chr5_4:21883801-21883820 | None:intergenic | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr5_4:21883926-21883945 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr5_4:21883927-21883946 | Msa0843950:CDS | 30.0% |
| ATTGAGACAACATCGTTTAA+TGG | - | chr5_4:21884648-21884667 | Msa0843950:intron | 30.0% | |
| ! | TTCTTTTCTTGCAACACAAT+CGG | + | chr5_4:21884912-21884931 | None:intergenic | 30.0% |
| ! | TGAATGATGATGATTTGCAA+AGG | - | chr5_4:21884943-21884962 | Msa0843950:CDS | 30.0% |
| CAAAGGATTCAGGAAATTTA+TGG | - | chr5_4:21884960-21884979 | Msa0843950:CDS | 30.0% | |
| ! | TGGTGCAAAAGAAATGGATT+CGG | + | chr5_4:21883602-21883621 | None:intergenic | 35.0% |
| AATTGCTGGTGCAAAAGAAA+TGG | + | chr5_4:21883608-21883627 | None:intergenic | 35.0% | |
| ! | ATTTCTTTTGCACCAGCAAT+TGG | - | chr5_4:21883607-21883626 | Msa0843950:CDS | 35.0% |
| !! | TTCAACAAAGCTCTAGAGAT+TGG | - | chr5_4:21883721-21883740 | Msa0843950:CDS | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr5_4:21884057-21884076 | Msa0843950:CDS | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr5_4:21884061-21884080 | Msa0843950:CDS | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr5_4:21884125-21884144 | Msa0843950:intron | 35.0% |
| ATTATTTCAAAGCCACGTTG+TGG | - | chr5_4:21884423-21884442 | Msa0843950:intron | 35.0% | |
| AAACAAGTCCATTTAAACCG+TGG | - | chr5_4:21884499-21884518 | Msa0843950:intron | 35.0% | |
| ! | TTTTTGACGTTGGATGGAAA+AGG | - | chr5_4:21884690-21884709 | Msa0843950:intron | 35.0% |
| TAATGTTGGCAGTGTATACT+TGG | - | chr5_4:21884749-21884768 | Msa0843950:intron | 35.0% | |
| TGTTGTTAAAGAGGATGATG+TGG | - | chr5_4:21884806-21884825 | Msa0843950:CDS | 35.0% | |
| !! | ATCAGGTTGGTCATTTACTA+GGG | - | chr5_4:21884850-21884869 | Msa0843950:CDS | 35.0% |
| GCAAGAAAAGAAGATTGAGT+TGG | - | chr5_4:21884920-21884939 | Msa0843950:CDS | 35.0% | |
| ! | TGATGATTTGCAAAGGATTC+AGG | - | chr5_4:21884950-21884969 | Msa0843950:CDS | 35.0% |
| ! | TGGTGCAAAAGAAATGGATT+CGG | + | chr5_4:21883602-21883621 | None:intergenic | 35.0% |
| AATTGCTGGTGCAAAAGAAA+TGG | + | chr5_4:21883608-21883627 | None:intergenic | 35.0% | |
| ! | ATTTCTTTTGCACCAGCAAT+TGG | - | chr5_4:21883607-21883626 | Msa0843950:CDS | 35.0% |
| !! | TTCAACAAAGCTCTAGAGAT+TGG | - | chr5_4:21883721-21883740 | Msa0843950:CDS | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr5_4:21884057-21884076 | Msa0843950:CDS | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr5_4:21884061-21884080 | Msa0843950:CDS | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr5_4:21884125-21884144 | Msa0843950:intron | 35.0% |
| ATTATTTCAAAGCCACGTTG+TGG | - | chr5_4:21884423-21884442 | Msa0843950:intron | 35.0% | |
| AAACAAGTCCATTTAAACCG+TGG | - | chr5_4:21884499-21884518 | Msa0843950:intron | 35.0% | |
| ! | TTTTTGACGTTGGATGGAAA+AGG | - | chr5_4:21884690-21884709 | Msa0843950:intron | 35.0% |
| TAATGTTGGCAGTGTATACT+TGG | - | chr5_4:21884749-21884768 | Msa0843950:intron | 35.0% | |
| TGTTGTTAAAGAGGATGATG+TGG | - | chr5_4:21884806-21884825 | Msa0843950:CDS | 35.0% | |
| !! | ATCAGGTTGGTCATTTACTA+GGG | - | chr5_4:21884850-21884869 | Msa0843950:CDS | 35.0% |
| GCAAGAAAAGAAGATTGAGT+TGG | - | chr5_4:21884920-21884939 | Msa0843950:CDS | 35.0% | |
| ! | TGATGATTTGCAAAGGATTC+AGG | - | chr5_4:21884950-21884969 | Msa0843950:CDS | 35.0% |
| CTTGAGTTTATTCCAGATGC+TGG | + | chr5_4:21883695-21883714 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr5_4:21884165-21884184 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr5_4:21884060-21884079 | Msa0843950:CDS | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr5_4:21884165-21884184 | Msa0843950:intron | 40.0% |
| ! | CCTGTGGAGAAAAACTTGTT+TGG | + | chr5_4:21884378-21884397 | None:intergenic | 40.0% |
| ! | CCAAACAAGTTTTTCTCCAC+AGG | - | chr5_4:21884375-21884394 | Msa0843950:intron | 40.0% |
| !! | ATCTTGATCAAGTTGACCTG+TGG | + | chr5_4:21884394-21884413 | None:intergenic | 40.0% |
| ! | GTGGTTCCATTGATTATGTC+GGG | + | chr5_4:21884453-21884472 | None:intergenic | 40.0% |
| ! | GGTGGTTCCATTGATTATGT+CGG | + | chr5_4:21884454-21884473 | None:intergenic | 40.0% |
| ! | GTTGGTGAAGTTGTTCTTCA+TGG | + | chr5_4:21884478-21884497 | None:intergenic | 40.0% |
| ATGCAGTTGCATTTGACCAA+CGG | + | chr5_4:21884620-21884639 | None:intergenic | 40.0% | |
| ! | TCGTATAGCGTTTTTGACGT+TGG | - | chr5_4:21884680-21884699 | Msa0843950:intron | 40.0% |
| ! | ATAGCGTTTTTGACGTTGGA+TGG | - | chr5_4:21884684-21884703 | Msa0843950:intron | 40.0% |
| TAAAGAGGATGATGTGGATC+TGG | - | chr5_4:21884812-21884831 | Msa0843950:CDS | 40.0% | |
| !! | CATCAGGTTGGTCATTTACT+AGG | - | chr5_4:21884849-21884868 | Msa0843950:CDS | 40.0% |
| GTTGGTCATTTACTAGGGTT+GGG | - | chr5_4:21884855-21884874 | Msa0843950:CDS | 40.0% | |
| TTGGTCATTTACTAGGGTTG+GGG | - | chr5_4:21884856-21884875 | Msa0843950:CDS | 40.0% | |
| CTTGAGTTTATTCCAGATGC+TGG | + | chr5_4:21883695-21883714 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr5_4:21884165-21884184 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr5_4:21884060-21884079 | Msa0843950:CDS | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr5_4:21884165-21884184 | Msa0843950:intron | 40.0% |
| ! | CCTGTGGAGAAAAACTTGTT+TGG | + | chr5_4:21884378-21884397 | None:intergenic | 40.0% |
| ! | CCAAACAAGTTTTTCTCCAC+AGG | - | chr5_4:21884375-21884394 | Msa0843950:intron | 40.0% |
| !! | ATCTTGATCAAGTTGACCTG+TGG | + | chr5_4:21884394-21884413 | None:intergenic | 40.0% |
| ! | GTGGTTCCATTGATTATGTC+GGG | + | chr5_4:21884453-21884472 | None:intergenic | 40.0% |
| ! | GGTGGTTCCATTGATTATGT+CGG | + | chr5_4:21884454-21884473 | None:intergenic | 40.0% |
| ! | GTTGGTGAAGTTGTTCTTCA+TGG | + | chr5_4:21884478-21884497 | None:intergenic | 40.0% |
| ATGCAGTTGCATTTGACCAA+CGG | + | chr5_4:21884620-21884639 | None:intergenic | 40.0% | |
| ! | TCGTATAGCGTTTTTGACGT+TGG | - | chr5_4:21884680-21884699 | Msa0843950:intron | 40.0% |
| ! | ATAGCGTTTTTGACGTTGGA+TGG | - | chr5_4:21884684-21884703 | Msa0843950:intron | 40.0% |
| TAAAGAGGATGATGTGGATC+TGG | - | chr5_4:21884812-21884831 | Msa0843950:CDS | 40.0% | |
| !! | CATCAGGTTGGTCATTTACT+AGG | - | chr5_4:21884849-21884868 | Msa0843950:CDS | 40.0% |
| GTTGGTCATTTACTAGGGTT+GGG | - | chr5_4:21884855-21884874 | Msa0843950:CDS | 40.0% | |
| TTGGTCATTTACTAGGGTTG+GGG | - | chr5_4:21884856-21884875 | Msa0843950:CDS | 40.0% | |
| GAGATTGGAGACATCGTTAG+CGG | - | chr5_4:21883736-21883755 | Msa0843950:CDS | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr5_4:21884164-21884183 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr5_4:21884164-21884183 | Msa0843950:intron | 45.0% |
| GGTGTTCCCGACATAATCAA+TGG | - | chr5_4:21884444-21884463 | Msa0843950:intron | 45.0% | |
| GAAGTTGTTCTTCATGGTGG+TGG | + | chr5_4:21884472-21884491 | None:intergenic | 45.0% | |
| GGTGAAGTTGTTCTTCATGG+TGG | + | chr5_4:21884475-21884494 | None:intergenic | 45.0% | |
| CAAGTCCATTTAAACCGTGG+TGG | - | chr5_4:21884502-21884521 | Msa0843950:intron | 45.0% | |
| TTCCTCCACCACGGTTTAAA+TGG | + | chr5_4:21884510-21884529 | None:intergenic | 45.0% | |
| TCGTCTGTGACGTTATTCTC+TGG | + | chr5_4:21884567-21884586 | None:intergenic | 45.0% | |
| TTCAAGACGCGTTTAACCGT+TGG | - | chr5_4:21884601-21884620 | Msa0843950:intron | 45.0% | |
| TTGACGTTGGATGGAAAAGG+TGG | - | chr5_4:21884693-21884712 | Msa0843950:intron | 45.0% | |
| GTTGGATGGAAAAGGTGGAA+CGG | - | chr5_4:21884698-21884717 | Msa0843950:intron | 45.0% | |
| ACTTGGATGCAGATGAACAG+TGG | - | chr5_4:21884766-21884785 | Msa0843950:intron | 45.0% | |
| CTTGGATGCAGATGAACAGT+GGG | - | chr5_4:21884767-21884786 | Msa0843950:intron | 45.0% | |
| GGAATCTGTTGTGATGCATC+AGG | - | chr5_4:21884833-21884852 | Msa0843950:CDS | 45.0% | |
| TCTGTTGTGATGCATCAGGT+TGG | - | chr5_4:21884837-21884856 | Msa0843950:CDS | 45.0% | |
| ! | GGTTGGTCATTTACTAGGGT+TGG | - | chr5_4:21884854-21884873 | Msa0843950:CDS | 45.0% |
| GAGATTGGAGACATCGTTAG+CGG | - | chr5_4:21883736-21883755 | Msa0843950:CDS | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr5_4:21884164-21884183 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr5_4:21884164-21884183 | Msa0843950:intron | 45.0% |
| GGTGTTCCCGACATAATCAA+TGG | - | chr5_4:21884444-21884463 | Msa0843950:intron | 45.0% | |
| GAAGTTGTTCTTCATGGTGG+TGG | + | chr5_4:21884472-21884491 | None:intergenic | 45.0% | |
| GGTGAAGTTGTTCTTCATGG+TGG | + | chr5_4:21884475-21884494 | None:intergenic | 45.0% | |
| CAAGTCCATTTAAACCGTGG+TGG | - | chr5_4:21884502-21884521 | Msa0843950:intron | 45.0% | |
| TTCCTCCACCACGGTTTAAA+TGG | + | chr5_4:21884510-21884529 | None:intergenic | 45.0% | |
| TCGTCTGTGACGTTATTCTC+TGG | + | chr5_4:21884567-21884586 | None:intergenic | 45.0% | |
| TTCAAGACGCGTTTAACCGT+TGG | - | chr5_4:21884601-21884620 | Msa0843950:intron | 45.0% | |
| TTGACGTTGGATGGAAAAGG+TGG | - | chr5_4:21884693-21884712 | Msa0843950:intron | 45.0% | |
| GTTGGATGGAAAAGGTGGAA+CGG | - | chr5_4:21884698-21884717 | Msa0843950:intron | 45.0% | |
| ACTTGGATGCAGATGAACAG+TGG | - | chr5_4:21884766-21884785 | Msa0843950:intron | 45.0% | |
| CTTGGATGCAGATGAACAGT+GGG | - | chr5_4:21884767-21884786 | Msa0843950:intron | 45.0% | |
| GGAATCTGTTGTGATGCATC+AGG | - | chr5_4:21884833-21884852 | Msa0843950:CDS | 45.0% | |
| TCTGTTGTGATGCATCAGGT+TGG | - | chr5_4:21884837-21884856 | Msa0843950:CDS | 45.0% | |
| ! | GGTTGGTCATTTACTAGGGT+TGG | - | chr5_4:21884854-21884873 | Msa0843950:CDS | 45.0% |
| ! | CGGAGGGAGTATATAGTGAC+CGG | - | chr5_4:21884181-21884200 | Msa0843950:intron | 50.0% |
| GTCCATTTAAACCGTGGTGG+AGG | - | chr5_4:21884505-21884524 | Msa0843950:intron | 50.0% | |
| ! | TAAACCGTGGTGGAGGAATG+TGG | - | chr5_4:21884512-21884531 | Msa0843950:intron | 50.0% |
| TTCTCCACATTCCTCCACCA+CGG | + | chr5_4:21884519-21884538 | None:intergenic | 50.0% | |
| GATGGAAAAGGTGGAACGGT+TGG | - | chr5_4:21884702-21884721 | Msa0843950:intron | 50.0% | |
| ! | GTTGGGGCATTCTTCTGTTG+AGG | - | chr5_4:21884872-21884891 | Msa0843950:CDS | 50.0% |
| ! | CGGAGGGAGTATATAGTGAC+CGG | - | chr5_4:21884181-21884200 | Msa0843950:intron | 50.0% |
| GTCCATTTAAACCGTGGTGG+AGG | - | chr5_4:21884505-21884524 | Msa0843950:intron | 50.0% | |
| ! | TAAACCGTGGTGGAGGAATG+TGG | - | chr5_4:21884512-21884531 | Msa0843950:intron | 50.0% |
| TTCTCCACATTCCTCCACCA+CGG | + | chr5_4:21884519-21884538 | None:intergenic | 50.0% | |
| GATGGAAAAGGTGGAACGGT+TGG | - | chr5_4:21884702-21884721 | Msa0843950:intron | 50.0% | |
| ! | GTTGGGGCATTCTTCTGTTG+AGG | - | chr5_4:21884872-21884891 | Msa0843950:CDS | 50.0% |
| ATGTCGGGAACACCACAACG+TGG | + | chr5_4:21884438-21884457 | None:intergenic | 55.0% | |
| GGAAAAGGTGGAACGGTTGG+AGG | - | chr5_4:21884705-21884724 | Msa0843950:intron | 55.0% | |
| ! | GGGGCATTCTTCTGTTGAGG+AGG | - | chr5_4:21884875-21884894 | Msa0843950:CDS | 55.0% |
| ATGTCGGGAACACCACAACG+TGG | + | chr5_4:21884438-21884457 | None:intergenic | 55.0% | |
| GGAAAAGGTGGAACGGTTGG+AGG | - | chr5_4:21884705-21884724 | Msa0843950:intron | 55.0% | |
| ! | GGGGCATTCTTCTGTTGAGG+AGG | - | chr5_4:21884875-21884894 | Msa0843950:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 21883532 | 21884995 | 21883532 | ID=Msa0843950;Name=Msa0843950 |
| chr5_4 | mRNA | 21883532 | 21884995 | 21883532 | ID=Msa0843950-mRNA-1;Parent=Msa0843950;Name=Msa0843950-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|0|0|2|0|259 |
| chr5_4 | exon | 21884777 | 21884995 | 21884777 | ID=Msa0843950-mRNA-1:exon:9064;Parent=Msa0843950-mRNA-1 |
| chr5_4 | exon | 21883532 | 21884092 | 21883532 | ID=Msa0843950-mRNA-1:exon:9063;Parent=Msa0843950-mRNA-1 |
| chr5_4 | CDS | 21884777 | 21884995 | 21884777 | ID=Msa0843950-mRNA-1:cds;Parent=Msa0843950-mRNA-1 |
| chr5_4 | CDS | 21883532 | 21884092 | 21883532 | ID=Msa0843950-mRNA-1:cds;Parent=Msa0843950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
