AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0004990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004990 MtrunA17_Chr1g0151781 98.547 344 5 0 1 344 1 344 0.0 708
Msa0004990 MtrunA17_Chr7g0249421 46.687 332 148 4 33 335 60 391 3.67e-98 299
Msa0004990 MtrunA17_Chr4g0022171 47.284 313 151 3 33 331 61 373 8.00e-98 297
Msa0004990 MtrunA17_Chr7g0243571 46.278 309 153 3 37 332 60 368 5.84e-97 294
Msa0004990 MtrunA17_Chr2g0324061 48.077 312 149 3 33 331 55 366 3.78e-95 290
Msa0004990 MtrunA17_Chr7g0221691 47.799 318 142 6 33 328 93 408 1.02e-94 289
Msa0004990 MtrunA17_Chr4g0004971 45.902 305 155 5 40 336 49 351 2.43e-87 267
Msa0004990 MtrunA17_Chr1g0192421 44.108 297 164 2 35 329 55 351 6.54e-86 263
Msa0004990 MtrunA17_Chr8g0342431 44.578 332 141 6 33 329 50 373 8.29e-84 259
Msa0004990 MtrunA17_Chr4g0067711 41.049 324 181 6 21 337 41 361 4.05e-83 256
Msa0004990 MtrunA17_Chr2g0295401 41.875 320 178 5 21 334 42 359 6.96e-83 255
Msa0004990 MtrunA17_Chr7g0272061 42.345 307 158 5 38 329 60 362 4.89e-82 254
Msa0004990 MtrunA17_Chr4g0066371 27.304 293 170 7 51 324 68 336 1.50e-31 122
Msa0004990 MtrunA17_Chr6g0486661 29.180 305 170 8 42 324 97 377 2.97e-30 121
Msa0004990 MtrunA17_Chr3g0136711 35.398 226 115 8 114 331 82 284 2.94e-27 108
Msa0004990 MtrunA17_Chr2g0286951 28.364 275 155 5 68 324 87 337 2.07e-26 108
Msa0004990 MtrunA17_Chr1g0150451 32.911 237 119 6 70 305 110 307 6.64e-26 105
Msa0004990 MtrunA17_Chr5g0396731 34.361 227 108 8 68 288 107 298 3.47e-23 98.6
Msa0004990 MtrunA17_Chr4g0070871 32.618 233 126 8 57 287 242 445 3.90e-22 97.1
Msa0004990 MtrunA17_Chr3g0135961 32.231 242 135 8 49 287 269 484 2.20e-21 95.1
Msa0004990 MtrunA17_Chr5g0435721 31.660 259 126 9 46 290 200 421 1.07e-20 92.8
Msa0004990 MtrunA17_Chr4g0051661 29.151 271 149 9 39 307 154 383 3.72e-20 90.5
Msa0004990 MtrunA17_Chr1g0212961 30.000 240 124 8 67 305 125 321 4.57e-20 89.7
Msa0004990 MtrunA17_Chr6g0483411 31.120 241 109 6 67 288 78 280 6.87e-20 89.0
Msa0004990 MtrunA17_Chr3g0112291 32.203 236 112 10 68 290 123 323 1.28e-19 89.0
Msa0004990 MtrunA17_Chr1g0194191 30.736 231 122 9 64 288 114 312 1.14e-18 86.3
Msa0004990 MtrunA17_Chr1g0158781 30.081 246 134 7 46 288 120 330 1.45e-18 85.9
Msa0004990 MtrunA17_Chr3g0136811 28.929 280 145 10 43 288 28 287 1.52e-18 85.5
Msa0004990 MtrunA17_Chr8g0389921 31.818 220 119 7 68 287 198 386 3.15e-18 85.5
Msa0004990 MtrunA17_Chr3g0138281 28.986 276 147 10 67 335 120 353 7.58e-18 83.6
Msa0004990 MtrunA17_Chr5g0407161 29.515 227 114 9 67 288 123 308 8.87e-18 83.6
Msa0004990 MtrunA17_Chr2g0299981 29.915 234 122 6 68 283 267 476 9.82e-18 84.3
Msa0004990 MtrunA17_Chr1g0150781 31.250 224 125 8 68 287 290 488 1.26e-17 84.0
Msa0004990 MtrunA17_Chr1g0150071 28.571 280 146 10 43 288 28 287 5.61e-17 80.9
Msa0004990 MtrunA17_Chr5g0426141 30.952 252 133 10 55 305 54 265 1.57e-16 78.6
Msa0004990 MtrunA17_Chr3g0126511 30.380 237 125 6 70 305 127 324 4.56e-16 78.6
Msa0004990 MtrunA17_Chr3g0105371 30.279 251 131 12 40 287 89 298 6.63e-16 77.8
Msa0004990 MtrunA17_Chr3g0144111 33.333 165 87 5 128 287 43 189 9.19e-16 76.3
Msa0004990 MtrunA17_Chr4g0001761 27.857 280 148 10 43 288 28 287 9.22e-16 77.4
Msa0004990 MtrunA17_Chr7g0256751 29.278 263 138 9 51 288 51 290 9.39e-16 77.8
Msa0004990 MtrunA17_Chr4g0050381 29.960 247 128 13 62 305 56 260 1.04e-15 76.3
Msa0004990 MtrunA17_Chr2g0317021 29.596 223 126 10 115 329 134 333 1.12e-15 77.0
Msa0004990 MtrunA17_Chr2g0293811 26.638 229 128 8 67 288 99 294 1.13e-15 77.4
Msa0004990 MtrunA17_Chr4g0067301 28.053 303 147 11 68 310 164 455 1.95e-15 77.0
Msa0004990 MtrunA17_Chr2g0295991 27.925 265 136 9 68 288 166 419 3.68e-15 76.3
Msa0004990 MtrunA17_Chr3g0115851 28.807 243 133 9 64 305 62 265 4.15e-15 74.7
Msa0004990 MtrunA17_Chr3g0105351 30.120 249 134 11 40 287 65 274 5.05e-15 74.7
Msa0004990 MtrunA17_Chr3g0089711 29.260 311 148 14 65 330 65 348 6.49e-15 75.1
Msa0004990 MtrunA17_Chr3g0089721 29.450 309 150 14 65 330 65 348 9.11e-15 74.7
Msa0004990 MtrunA17_Chr8g0360351 28.000 250 121 11 66 305 65 265 2.34e-14 72.4
Msa0004990 MtrunA17_Chr2g0279151 27.881 269 153 10 38 305 36 264 2.59e-14 72.4
Msa0004990 MtrunA17_Chr4g0063051 25.568 352 191 13 19 337 10 323 2.60e-14 73.2
Msa0004990 MtrunA17_Chr7g0256771 28.295 258 120 12 64 288 66 291 7.61e-14 71.2
Msa0004990 MtrunA17_Chr1g0213351 27.742 310 166 13 62 340 74 356 9.78e-14 71.6
Msa0004990 MtrunA17_Chr7g0238501 24.834 302 175 11 40 312 238 516 1.34e-13 71.6
Msa0004990 MtrunA17_Chr4g0039061 26.119 268 158 8 68 312 202 452 2.72e-13 70.5
Msa0004990 MtrunA17_Chr5g0430481 29.134 254 130 10 40 287 125 334 3.50e-13 69.7
Msa0004990 MtrunA17_Chr4g0065141 23.827 277 155 8 67 332 123 354 6.41e-13 69.3
Msa0004990 MtrunA17_Chr7g0263281 27.170 265 136 10 53 288 56 292 1.37e-12 68.2
Msa0004990 MtrunA17_Chr3g0089691 30.000 230 102 10 163 343 62 281 2.83e-12 66.6
Msa0004990 MtrunA17_Chr1g0193691 31.788 151 72 4 184 312 712 853 4.38e-11 64.3
Msa0004990 MtrunA17_Chr1g0171571 26.471 272 160 10 61 329 411 645 6.68e-11 63.5
Msa0004990 MtrunA17_Chr7g0250061 28.364 275 141 12 66 312 74 320 9.77e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004990 AT5G26010.1 53.824 340 139 8 1 333 1 329 3.70e-107 317
Msa0004990 AT4G32950.1 49.271 343 144 7 1 333 1 323 2.23e-102 304
Msa0004990 AT5G36250.1 46.061 330 151 5 33 335 62 391 1.14e-100 304
Msa0004990 AT1G16220.1 48.910 321 142 5 31 329 57 377 1.51e-99 303
Msa0004990 AT1G79630.1 44.022 368 156 5 11 336 48 407 4.33e-99 302
Msa0004990 AT1G79630.8 44.022 368 156 5 11 336 44 403 4.36e-99 302
Msa0004990 AT1G03590.1 46.398 347 166 4 1 331 23 365 5.99e-99 300
Msa0004990 AT5G36250.2 44.477 344 150 6 33 335 62 405 1.26e-96 294
Msa0004990 AT4G03415.1 48.039 306 144 5 41 331 70 375 1.74e-92 284
Msa0004990 AT4G03415.3 48.039 306 144 5 41 331 70 375 1.74e-92 284
Msa0004990 AT4G03415.2 48.039 306 144 5 41 331 70 375 1.74e-92 284
Msa0004990 AT3G02750.2 45.322 342 146 4 33 334 59 399 4.70e-92 283
Msa0004990 AT3G02750.1 45.322 342 146 4 33 334 59 399 4.70e-92 283
Msa0004990 AT1G79630.2 46.326 313 127 3 65 336 25 337 1.19e-90 278
Msa0004990 AT1G79630.7 46.326 313 127 3 65 336 25 337 1.19e-90 278
Msa0004990 AT5G01700.1 45.151 299 152 4 44 336 4 296 7.81e-88 268
Msa0004990 AT5G01700.2 44.884 303 155 4 40 336 49 345 3.29e-87 268
Msa0004990 AT3G02750.3 41.114 377 146 5 33 334 59 434 1.05e-84 266
Msa0004990 AT3G05640.2 44.407 295 155 5 38 329 62 350 3.44e-82 254
Msa0004990 AT3G05640.1 44.407 295 155 5 38 329 62 350 3.44e-82 254
Msa0004990 AT3G05640.3 44.407 295 155 5 38 329 62 350 3.44e-82 254
Msa0004990 AT1G79630.6 56.279 215 93 1 116 329 76 290 4.78e-82 254
Msa0004990 AT1G79630.3 56.279 215 93 1 116 329 76 290 4.78e-82 254
Msa0004990 AT1G79630.4 56.279 215 93 1 116 329 76 290 4.78e-82 254
Msa0004990 AT1G79630.5 56.279 215 93 1 116 329 76 290 4.78e-82 254
Msa0004990 AT5G27930.1 42.662 293 165 3 38 327 61 353 1.46e-79 248
Msa0004990 AT5G27930.2 42.662 293 165 3 38 327 61 353 1.46e-79 248
Msa0004990 AT4G32950.2 47.350 283 121 6 1 275 1 263 8.56e-78 240
Msa0004990 AT5G36250.3 44.322 273 125 5 33 278 62 334 2.70e-76 238
Msa0004990 AT3G16800.2 39.262 298 171 4 35 329 59 349 1.87e-74 234
Msa0004990 AT3G16800.1 39.262 298 171 4 35 329 59 349 1.87e-74 234
Msa0004990 AT3G16800.3 39.262 298 171 4 35 329 59 349 1.87e-74 234
Msa0004990 AT3G16800.4 38.697 261 151 3 71 329 1 254 4.45e-64 204
Msa0004990 AT3G16800.6 38.697 261 151 3 71 329 1 254 4.45e-64 204
Msa0004990 AT5G27930.3 42.739 241 135 3 38 275 61 301 1.44e-63 205
Msa0004990 AT2G20050.1 30.645 310 167 8 39 324 108 393 3.66e-34 133
Msa0004990 AT2G20050.2 30.645 310 167 8 39 324 108 393 3.83e-34 133
Msa0004990 AT3G16800.5 36.310 168 97 4 35 199 59 219 1.00e-29 114
Msa0004990 AT3G06270.1 26.756 299 176 7 51 330 70 344 4.84e-28 112
Msa0004990 AT5G10740.1 31.321 265 134 8 67 329 63 281 7.45e-26 106
Msa0004990 AT5G10740.2 31.321 265 134 8 67 329 63 281 7.45e-26 106
Msa0004990 AT4G31750.1 36.036 222 112 7 114 327 81 280 1.10e-25 105
Msa0004990 AT4G31750.3 36.036 222 112 7 114 327 81 280 1.10e-25 105
Msa0004990 AT4G31750.2 36.036 222 112 7 114 327 81 280 1.44e-25 104
Msa0004990 AT1G07430.1 31.900 279 156 11 22 290 102 356 2.45e-25 106
Msa0004990 AT5G59220.1 32.342 269 125 9 41 290 114 344 6.40e-25 104
Msa0004990 AT5G24940.1 31.061 264 134 8 68 329 64 281 1.08e-24 104
Msa0004990 AT1G43900.1 32.231 242 123 7 67 307 153 354 6.61e-22 95.9
Msa0004990 AT3G11410.1 30.855 269 126 11 46 290 112 344 2.24e-20 91.7
Msa0004990 AT1G72770.4 31.064 235 125 7 66 287 236 446 1.28e-19 90.1
Msa0004990 AT1G72770.1 31.064 235 125 7 66 287 236 446 1.28e-19 90.1
Msa0004990 AT1G72770.3 31.064 235 125 7 66 287 236 446 1.28e-19 90.1
Msa0004990 AT2G20630.2 29.577 284 134 13 65 337 60 288 2.24e-19 87.4
Msa0004990 AT2G20630.1 30.159 252 120 10 65 307 60 264 5.68e-19 85.9
Msa0004990 AT4G28400.3 29.730 259 125 10 62 311 40 250 7.38e-19 85.5
Msa0004990 AT4G28400.1 29.730 259 125 10 62 311 62 272 1.15e-18 85.1
Msa0004990 AT2G29380.1 29.297 256 152 10 41 290 80 312 2.02e-18 85.5
Msa0004990 AT5G53140.1 29.412 272 134 10 70 334 134 354 3.26e-18 85.5
Msa0004990 AT5G53140.2 29.412 272 134 10 70 334 134 354 3.26e-18 85.5
Msa0004990 AT2G33700.1 30.142 282 137 12 66 336 121 353 6.65e-18 84.3
Msa0004990 AT2G25620.1 29.137 278 141 11 67 332 127 360 8.56e-18 84.0
Msa0004990 AT2G25620.2 29.137 278 141 11 67 332 127 360 8.56e-18 84.0
Msa0004990 AT5G57050.2 30.909 220 124 6 68 287 120 311 1.16e-17 83.6
Msa0004990 AT5G57050.1 30.909 220 124 6 68 287 160 351 1.50e-17 83.6
Msa0004990 AT4G26080.1 31.797 217 116 8 68 283 172 357 1.68e-17 83.6
Msa0004990 AT5G51760.2 30.417 240 131 7 68 295 114 329 1.88e-17 83.2
Msa0004990 AT5G51760.1 30.417 240 131 7 68 295 144 359 2.11e-17 83.2
Msa0004990 AT2G34740.1 31.955 266 131 13 67 329 118 336 3.22e-17 82.0
Msa0004990 AT3G62260.3 29.310 232 125 8 64 288 23 222 4.94e-17 80.9
Msa0004990 AT1G17550.1 30.493 223 131 6 68 283 237 442 9.51e-17 81.6
Msa0004990 AT1G17550.2 30.493 223 131 6 68 283 237 442 9.51e-17 81.6
Msa0004990 AT4G31860.1 27.857 280 148 10 43 288 28 287 1.14e-16 80.5
Msa0004990 AT3G62260.2 29.310 232 125 8 64 288 113 312 1.33e-16 80.5
Msa0004990 AT3G62260.1 29.310 232 125 8 64 288 112 311 1.44e-16 80.5
Msa0004990 AT1G78200.5 32.804 189 97 5 126 305 54 221 1.89e-16 78.2
Msa0004990 AT1G78200.4 32.804 189 97 5 126 305 54 221 1.89e-16 78.2
Msa0004990 AT1G67820.2 29.766 299 170 9 41 337 87 347 2.21e-16 80.1
Msa0004990 AT1G67820.1 29.766 299 170 9 41 337 123 383 3.26e-16 79.7
Msa0004990 AT1G78200.1 33.516 182 105 5 126 305 99 266 3.42e-16 78.2
Msa0004990 AT1G78200.3 33.516 182 105 5 126 305 99 266 3.42e-16 78.2
Msa0004990 AT1G78200.2 33.516 182 105 5 126 305 99 266 3.42e-16 78.2
Msa0004990 AT1G22280.3 31.250 256 123 14 59 305 59 270 3.46e-16 78.2
Msa0004990 AT3G51470.2 27.848 237 125 8 57 288 51 246 5.67e-16 78.2
Msa0004990 AT3G51470.1 28.270 237 124 9 57 288 95 290 6.71e-16 78.2
Msa0004990 AT2G40180.1 29.368 269 142 10 28 288 118 346 9.93e-16 78.2
Msa0004990 AT3G17250.1 26.957 230 130 8 67 288 157 356 2.02e-15 77.4
Msa0004990 AT1G18030.1 29.060 234 123 5 67 288 108 310 2.05e-15 76.6
Msa0004990 AT1G18030.2 29.437 231 106 5 67 278 108 300 2.18e-15 76.3
Msa0004990 AT1G07160.1 27.891 294 170 10 40 328 124 380 7.74e-15 75.1
Msa0004990 AT2G30020.1 28.287 251 138 9 40 287 141 352 2.25e-14 73.9
Msa0004990 AT1G34750.2 28.866 194 95 7 126 305 101 265 5.61e-14 71.6
Msa0004990 AT1G34750.1 28.866 194 95 7 126 305 101 265 5.61e-14 71.6
Msa0004990 AT1G34750.3 28.866 194 95 7 126 305 101 265 5.61e-14 71.6
Msa0004990 AT1G22280.1 32.673 202 106 10 115 305 82 264 8.43e-14 71.2
Msa0004990 AT3G16560.3 25.087 287 162 9 68 312 175 450 1.89e-13 71.6
Msa0004990 AT3G16560.1 25.087 287 162 9 68 312 175 450 2.57e-13 71.2
Msa0004990 AT3G16560.4 25.087 287 162 9 68 312 175 450 2.57e-13 71.2
Msa0004990 AT3G16560.2 25.087 287 162 9 68 312 175 450 2.57e-13 71.2
Msa0004990 AT4G28400.2 30.088 226 101 10 62 278 62 239 3.94e-13 68.9
Msa0004990 AT1G48040.1 28.509 228 127 9 67 288 115 312 4.90e-13 70.1
Msa0004990 AT3G55050.1 26.207 290 158 13 50 312 68 328 1.49e-12 68.6
Msa0004990 AT3G55050.2 26.207 290 158 13 50 312 68 328 1.49e-12 68.6
Msa0004990 AT3G15260.2 29.231 195 102 8 125 307 104 274 6.12e-12 65.9
Msa0004990 AT3G15260.1 29.231 195 102 8 125 307 104 274 6.12e-12 65.9
Msa0004990 AT3G12620.2 27.500 280 137 12 66 312 81 327 7.42e-12 66.2
Msa0004990 AT3G12620.1 27.500 280 137 12 66 312 81 327 7.42e-12 66.2
Msa0004990 AT5G06750.3 26.855 283 156 10 58 312 71 330 2.06e-11 65.1
Msa0004990 AT5G06750.1 26.855 283 156 10 58 312 71 330 2.06e-11 65.1
Msa0004990 AT4G27800.2 31.282 195 88 7 126 288 131 311 4.01e-11 63.9
Msa0004990 AT4G27800.3 31.282 195 88 7 126 288 131 311 4.42e-11 63.5
Msa0004990 AT4G27800.1 31.282 195 88 7 126 288 131 311 5.76e-11 63.5
Msa0004990 AT2G34740.2 33.889 180 93 10 112 282 147 309 6.77e-11 63.2
Msa0004990 AT2G34740.3 31.193 218 108 11 67 282 114 291 7.23e-11 62.8

Find 78 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTTGTGTTTATGCGTTAA+AGG 0.236530 1_1:-7429991 Msa0004990:CDS
TTATTGCTACACCAGATATT+TGG 0.238563 1_1:-7429869 Msa0004990:CDS
ACCACAAAACTTGGAGTATA+TGG 0.271089 1_1:-7429542 Msa0004990:CDS
AAAGTCTCTTAGTCTCATTT+TGG 0.297664 1_1:+7431818 None:intergenic
TCTCCTCAAGGGCATTCTTT+TGG 0.300576 1_1:+7431031 None:intergenic
TATATGGACAGTGGAAAATT+AGG 0.305057 1_1:-7429526 Msa0004990:CDS
CAGGCGAAGCAAAGAGAATA+AGG 0.327044 1_1:-7430022 Msa0004990:CDS
TCTTGGAGCTTTCAATGTAA+TGG 0.363239 1_1:-7430932 Msa0004990:CDS
CTAGCCATGTCTCGAGCTTT+CGG 0.377337 1_1:-7429918 Msa0004990:CDS
GGTGACTCAAGAGCAATATT+AGG 0.378928 1_1:-7430726 Msa0004990:CDS
AGATGGAAAGAAGCTATTCT+TGG 0.379447 1_1:-7430949 Msa0004990:CDS
AAACGGTGATACCAAATATC+TGG 0.385349 1_1:+7429858 None:intergenic
GTGGTTTCTTCTGCAGGAAA+TGG 0.397763 1_1:+7429560 None:intergenic
CACTTGCAAGAACAATAAAT+TGG 0.399587 1_1:+7429823 None:intergenic
AGTACCTTGTTTAGAGTAAA+CGG 0.400838 1_1:+7431792 None:intergenic
TAGGCCAGGGTAGTTCTCAT+TGG 0.416310 1_1:+7429938 None:intergenic
TTTCAAACAACTATCTAAGA+TGG 0.418400 1_1:-7430966 Msa0004990:CDS
CAAATCAGTGGTCAATTGAA+TGG 0.418841 1_1:+7430677 None:intergenic
ATTGGTCACTTGATGTTAAA+CGG 0.419251 1_1:+7429841 None:intergenic
TTACTCTAAACAAGGTACTA+AGG 0.430230 1_1:-7431788 Msa0004990:CDS
AACCACATGTCCAACGAGTA+TGG 0.432459 1_1:-7429965 Msa0004990:CDS
GTTGCATCTTCAGAGATTCA+TGG 0.433464 1_1:-7431892 Msa0004990:CDS
TTTATTGTTCTTGCAAGTGA+TGG 0.439321 1_1:-7429819 Msa0004990:CDS
GCAGAAGAAACCACAAAACT+TGG 0.461758 1_1:-7429551 Msa0004990:CDS
TTGACCACTGATTTGAAGCC+GGG 0.462099 1_1:-7430669 Msa0004990:CDS
CTTCTTTGCCCATGCAGCTG+TGG 0.475385 1_1:+7429621 None:intergenic
CATTCTCATCATGAACTTGA+GGG 0.480118 1_1:+7431866 None:intergenic
AAGGATTATGGGATGAAAGA+TGG 0.481239 1_1:-7431144 Msa0004990:CDS
AGGCCAGGGTAGTTCTCATT+GGG 0.484559 1_1:+7429939 None:intergenic
TTATTGTTCTTGCAAGTGAT+GGG 0.484730 1_1:-7429818 Msa0004990:CDS
GGAAGCAGCCACAGCTGCAT+GGG 0.485485 1_1:-7429629 Msa0004990:CDS
GCTCGAGACATGGCTAGGCC+AGG 0.488145 1_1:+7429924 None:intergenic
GGAAGCTGCAAGGGCAGTGG+TGG 0.495822 1_1:-7429650 Msa0004990:CDS
GAGTGAAGAGGAAGCTGCAA+GGG 0.496594 1_1:-7429659 Msa0004990:CDS
CAAAGAAGTTTCCTTCCTCT+AGG 0.507704 1_1:-7429606 Msa0004990:CDS
GGTGAAGAGAAGCAGCATCT+TGG 0.517349 1_1:+7431758 None:intergenic
AGATGCTGCTTCTCTTCACC+AGG 0.518124 1_1:-7431755 Msa0004990:intron
ATTGACCACTGATTTGAAGC+CGG 0.518210 1_1:-7430670 Msa0004990:CDS
TGCTGTAGTTGTCATAAGAC+AGG 0.527202 1_1:-7430857 Msa0004990:intron
TGGAAGCAGCCACAGCTGCA+TGG 0.533129 1_1:-7429630 Msa0004990:CDS
AATCTAGATTGTTCTTGTAG+TGG 0.537196 1_1:-7430886 Msa0004990:CDS
TACTCTAAACAAGGTACTAA+GGG 0.539094 1_1:-7431787 Msa0004990:CDS
AGAATCTTACAAGGCAATCC+CGG 0.541715 1_1:+7430651 None:intergenic
TTGTTGTATTAATCTCCTCA+AGG 0.549692 1_1:+7431019 None:intergenic
ACATTCTCATCATGAACTTG+AGG 0.551482 1_1:+7431865 None:intergenic
TGTTGTATTAATCTCCTCAA+GGG 0.556478 1_1:+7431020 None:intergenic
GGTCTTATCATAGTTAACCT+TGG 0.561803 1_1:-7430747 Msa0004990:CDS
AAAGAAGTTTCCTTCCTCTA+GGG 0.562358 1_1:-7429605 Msa0004990:CDS
AACCATACTCGTTGGACATG+TGG 0.563398 1_1:+7429963 None:intergenic
CATTGGGCAACCATACTCGT+TGG 0.565790 1_1:+7429955 None:intergenic
CGAAAGCTCGAGACATGGCT+AGG 0.567459 1_1:+7429919 None:intergenic
TTTCAATGTAATGGATGAAG+AGG 0.572129 1_1:-7430923 Msa0004990:CDS
CATGATATTTGAAGCAAGCA+AGG 0.574257 1_1:-7431842 Msa0004990:CDS
AGAGGAAGCTGCAAGGGCAG+TGG 0.574488 1_1:-7429653 Msa0004990:CDS
CTCGAGACATGGCTAGGCCA+GGG 0.576527 1_1:+7429925 None:intergenic
TTGCCCAATGAGAACTACCC+TGG 0.599999 1_1:-7429942 Msa0004990:CDS
CAATCATCTACCCTAGAGGA+AGG 0.600898 1_1:+7429595 None:intergenic
ATGAATCTCTGAAGATGCAA+CGG 0.607268 1_1:+7431894 None:intergenic
GAGCCAAAAGAATGCCCTTG+AGG 0.608848 1_1:-7431034 Msa0004990:CDS
AGAGTGAAGAGGAAGCTGCA+AGG 0.613435 1_1:-7429660 Msa0004990:CDS
TGCTCCGTTTACTCTAAACA+AGG 0.613627 1_1:-7431796 Msa0004990:CDS
TATTGTTCTTGCAAGTGATG+GGG 0.615238 1_1:-7429817 Msa0004990:intron
ATCTCCGAAAGCTCGAGACA+TGG 0.616410 1_1:+7429914 None:intergenic
GAACAATATAAACAGGGTGA+AGG 0.617168 1_1:-7430768 Msa0004990:intron
TGTGGTGTTTATGATGGACA+TGG 0.621779 1_1:-7431114 Msa0004990:CDS
GGTTGCATCAATTGTGTGGA+TGG 0.622975 1_1:-7429686 Msa0004990:CDS
GATTTCATACTTAAAGACCA+TGG 0.635074 1_1:-7429894 Msa0004990:CDS
CAATCCCGGCTTCAAATCAG+TGG 0.636969 1_1:+7430665 None:intergenic
GTGGATGGTAGAGAGTGAAG+AGG 0.644994 1_1:-7429671 Msa0004990:CDS
AAGAGGTTGCATCAATTGTG+TGG 0.658363 1_1:-7429690 Msa0004990:CDS
AAGAGAATAAGGAGTTGCAA+CGG 0.664540 1_1:-7430011 Msa0004990:CDS
AACTTGGAGTATATGGACAG+TGG 0.675658 1_1:-7429535 Msa0004990:CDS
GGATGTACTAAGTAATGAAG+AGG 0.676441 1_1:-7429707 Msa0004990:CDS
ATATTGCTCTTGAGTCACCA+AGG 0.689464 1_1:+7430730 None:intergenic
CTGCAGGAAATGGCAAACCA+CGG 0.691531 1_1:+7429570 None:intergenic
GGTGCAATCATCTACCCTAG+AGG 0.703711 1_1:+7429591 None:intergenic
CTGGTGTAGCAATAACACCA+TGG 0.708013 1_1:+7429877 None:intergenic
TAGGGTAGATGATTGCACCG+TGG 0.761662 1_1:-7429587 Msa0004990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAATATTATTATATT+TGG + chr1_1:7431163-7431182 None:intergenic 0.0%
!! TATTAAAATATTATTATATT+TGG + chr1_1:7431163-7431182 None:intergenic 0.0%
!! AAAAAAAAAAAAAACTTTGA+TGG - chr1_1:7430014-7430033 Msa0004990:CDS 10.0%
!! TATCTTAAATTACTAAAAAA+AGG + chr1_1:7430064-7430083 None:intergenic 10.0%
!!! ATCATTTTCTAAAAAAAAAA+AGG - chr1_1:7431095-7431114 Msa0004990:CDS 10.0%
!! AAAAAAAAAAAAAACTTTGA+TGG - chr1_1:7430014-7430033 Msa0004990:CDS 10.0%
!! TATCTTAAATTACTAAAAAA+AGG + chr1_1:7430064-7430083 None:intergenic 10.0%
!!! ATCATTTTCTAAAAAAAAAA+AGG - chr1_1:7431095-7431114 Msa0004990:CDS 10.0%
!!! AATTTAAGATATCATGATTA+TGG - chr1_1:7430073-7430092 Msa0004990:intron 15.0%
!!! ATTTTCTAAAAAAAAAAAGG+TGG - chr1_1:7431098-7431117 Msa0004990:CDS 15.0%
!! TATTTGTATCTAAACTAAAT+TGG - chr1_1:7431383-7431402 Msa0004990:intron 15.0%
!!! AATTTAAGATATCATGATTA+TGG - chr1_1:7430073-7430092 Msa0004990:intron 15.0%
!!! ATTTTCTAAAAAAAAAAAGG+TGG - chr1_1:7431098-7431117 Msa0004990:CDS 15.0%
!! TATTTGTATCTAAACTAAAT+TGG - chr1_1:7431383-7431402 Msa0004990:intron 15.0%
!!! TAACCTTTAAATAATTTGCA+TGG - chr1_1:7429719-7429738 Msa0004990:intron 20.0%
!!! AATTTGAAGATAATTTTGCA+TGG - chr1_1:7429858-7429877 Msa0004990:CDS 20.0%
!! TGTTGTGATCTTTAATATTA+AGG - chr1_1:7429916-7429935 Msa0004990:CDS 20.0%
!! AAGTACATGACTTTATAAAA+AGG + chr1_1:7430196-7430215 None:intergenic 20.0%
!! TTAAGGAAAAAGAAACAAAA+GGG + chr1_1:7430268-7430287 None:intergenic 20.0%
!! TTTAAGGAAAAAGAAACAAA+AGG + chr1_1:7430269-7430288 None:intergenic 20.0%
!!! TTTGTTTCTTTTTCCTTAAA+AGG - chr1_1:7430269-7430288 Msa0004990:intron 20.0%
!!! TTTTTCCTTAAAAGGATTAT+GGG - chr1_1:7430277-7430296 Msa0004990:intron 20.0%
!! GAGATTAATACAACAAAAAA+TGG - chr1_1:7430420-7430439 Msa0004990:intron 20.0%
!! ATAACAAGAACAATATAAAC+AGG - chr1_1:7430657-7430676 Msa0004990:intron 20.0%
!! TAACAAGAACAATATAAACA+GGG - chr1_1:7430658-7430677 Msa0004990:intron 20.0%
!! TTCATATAACTGTTAAACTA+AGG + chr1_1:7431020-7431039 None:intergenic 20.0%
!! ATATTTGGATTAAAATACGT+CGG + chr1_1:7431148-7431167 None:intergenic 20.0%
!!! AATGGCTTTATCATTATTTA+TGG - chr1_1:7431680-7431699 Msa0004990:intron 20.0%
!!! TATGGATATTTTTTGCTTAT+AGG - chr1_1:7431698-7431717 Msa0004990:intron 20.0%
!!! TAACCTTTAAATAATTTGCA+TGG - chr1_1:7429719-7429738 Msa0004990:intron 20.0%
!!! AATTTGAAGATAATTTTGCA+TGG - chr1_1:7429858-7429877 Msa0004990:CDS 20.0%
!! TGTTGTGATCTTTAATATTA+AGG - chr1_1:7429916-7429935 Msa0004990:CDS 20.0%
!! AAGTACATGACTTTATAAAA+AGG + chr1_1:7430196-7430215 None:intergenic 20.0%
!! TTAAGGAAAAAGAAACAAAA+GGG + chr1_1:7430268-7430287 None:intergenic 20.0%
!! TTTAAGGAAAAAGAAACAAA+AGG + chr1_1:7430269-7430288 None:intergenic 20.0%
!!! TTTGTTTCTTTTTCCTTAAA+AGG - chr1_1:7430269-7430288 Msa0004990:intron 20.0%
!!! TTTTTCCTTAAAAGGATTAT+GGG - chr1_1:7430277-7430296 Msa0004990:intron 20.0%
!! GAGATTAATACAACAAAAAA+TGG - chr1_1:7430420-7430439 Msa0004990:intron 20.0%
!! ATAACAAGAACAATATAAAC+AGG - chr1_1:7430657-7430676 Msa0004990:intron 20.0%
!! TAACAAGAACAATATAAACA+GGG - chr1_1:7430658-7430677 Msa0004990:intron 20.0%
!! TTCATATAACTGTTAAACTA+AGG + chr1_1:7431020-7431039 None:intergenic 20.0%
!! ATATTTGGATTAAAATACGT+CGG + chr1_1:7431148-7431167 None:intergenic 20.0%
!!! AATGGCTTTATCATTATTTA+TGG - chr1_1:7431680-7431699 Msa0004990:intron 20.0%
!!! TATGGATATTTTTTGCTTAT+AGG - chr1_1:7431698-7431717 Msa0004990:intron 20.0%
!! CTTTTTCCTTAAAAGGATTA+TGG - chr1_1:7430276-7430295 Msa0004990:intron 25.0%
! TTTCAAACAACTATCTAAGA+TGG - chr1_1:7430466-7430485 Msa0004990:intron 25.0%
! TTTATGAGAAGAATCTTACA+AGG + chr1_1:7430793-7430812 None:intergenic 25.0%
!!! CTTTTCAATTATTGGTTTGA+CGG - chr1_1:7430827-7430846 Msa0004990:intron 25.0%
!!! ATATTTTTTGCTTATAGGTG+TGG - chr1_1:7431703-7431722 Msa0004990:intron 25.0%
!!! TATTTTTTGCTTATAGGTGT+GGG - chr1_1:7431704-7431723 Msa0004990:intron 25.0%
!! CTTTTTCCTTAAAAGGATTA+TGG - chr1_1:7430276-7430295 Msa0004990:intron 25.0%
! TTTCAAACAACTATCTAAGA+TGG - chr1_1:7430466-7430485 Msa0004990:intron 25.0%
! TTTATGAGAAGAATCTTACA+AGG + chr1_1:7430793-7430812 None:intergenic 25.0%
!!! CTTTTCAATTATTGGTTTGA+CGG - chr1_1:7430827-7430846 Msa0004990:intron 25.0%
!!! ATATTTTTTGCTTATAGGTG+TGG - chr1_1:7431703-7431722 Msa0004990:intron 25.0%
!!! TATTTTTTGCTTATAGGTGT+GGG - chr1_1:7431704-7431723 Msa0004990:intron 25.0%
! AAAGTCTCTTAGTCTCATTT+TGG + chr1_1:7429617-7429636 None:intergenic 30.0%
! AGTACCTTGTTTAGAGTAAA+CGG + chr1_1:7429643-7429662 None:intergenic 30.0%
! TTACTCTAAACAAGGTACTA+AGG - chr1_1:7429644-7429663 Msa0004990:CDS 30.0%
! TACTCTAAACAAGGTACTAA+GGG - chr1_1:7429645-7429664 Msa0004990:CDS 30.0%
TGGCCATGCAAATTATTTAA+AGG + chr1_1:7429725-7429744 None:intergenic 30.0%
ATGAGAGAATTAAAACCTTG+TGG + chr1_1:7429745-7429764 None:intergenic 30.0%
!!! ACAAGGTTTTAATTCTCTCA+TGG - chr1_1:7429744-7429763 Msa0004990:intron 30.0%
TCTTCAAATTCTACACAACT+TGG + chr1_1:7429848-7429867 None:intergenic 30.0%
CAATCTGAGTCAAGATATTA+AGG + chr1_1:7430163-7430182 None:intergenic 30.0%
AGAAACAAAAGGGAGATATA+TGG + chr1_1:7430258-7430277 None:intergenic 30.0%
! TTCATCCCATAATCCTTTTA+AGG + chr1_1:7430285-7430304 None:intergenic 30.0%
!! TATGATGGACATGGAAAAAA+TGG - chr1_1:7430327-7430346 Msa0004990:intron 30.0%
TGTTGTATTAATCTCCTCAA+GGG + chr1_1:7430415-7430434 None:intergenic 30.0%
TTGTTGTATTAATCTCCTCA+AGG + chr1_1:7430416-7430435 None:intergenic 30.0%
!! TTTCAATGTAATGGATGAAG+AGG - chr1_1:7430509-7430528 Msa0004990:intron 30.0%
AATCTAGATTGTTCTTGTAG+TGG - chr1_1:7430546-7430565 Msa0004990:intron 30.0%
!!! TGGCTTTTAGTTTTTCATCT+TGG + chr1_1:7430738-7430757 None:intergenic 30.0%
ATAATTGAAAAGAAGCTGCA+TGG + chr1_1:7430819-7430838 None:intergenic 30.0%
! TGCAGCTTCTTTTCAATTAT+TGG - chr1_1:7430819-7430838 Msa0004990:intron 30.0%
AACTGTTAAACTAAGGTGTA+TGG + chr1_1:7431013-7431032 None:intergenic 30.0%
CAAATAAGAGACTTCTAGAT+AGG - chr1_1:7431069-7431088 Msa0004990:CDS 30.0%
! TGTGTCATTATTGACGTTTA+AGG + chr1_1:7431218-7431237 None:intergenic 30.0%
TTAAACGTCAATAATGACAC+AGG - chr1_1:7431217-7431236 Msa0004990:intron 30.0%
TAAACGTCAATAATGACACA+GGG - chr1_1:7431218-7431237 Msa0004990:intron 30.0%
TCTAAACTAAATTGGAATGC+AGG - chr1_1:7431391-7431410 Msa0004990:intron 30.0%
GATTTCATACTTAAAGACCA+TGG - chr1_1:7431538-7431557 Msa0004990:intron 30.0%
TTATTGCTACACCAGATATT+TGG - chr1_1:7431563-7431582 Msa0004990:intron 30.0%
ATTGGTCACTTGATGTTAAA+CGG + chr1_1:7431594-7431613 None:intergenic 30.0%
CACTTGCAAGAACAATAAAT+TGG + chr1_1:7431612-7431631 None:intergenic 30.0%
TTTATTGTTCTTGCAAGTGA+TGG - chr1_1:7431613-7431632 Msa0004990:intron 30.0%
TTATTGTTCTTGCAAGTGAT+GGG - chr1_1:7431614-7431633 Msa0004990:intron 30.0%
CTTGCATACAACAATTTCAA+TGG - chr1_1:7431662-7431681 Msa0004990:intron 30.0%
TATATGGACAGTGGAAAATT+AGG - chr1_1:7431906-7431925 Msa0004990:CDS 30.0%
! AAAGTCTCTTAGTCTCATTT+TGG + chr1_1:7429617-7429636 None:intergenic 30.0%
! AGTACCTTGTTTAGAGTAAA+CGG + chr1_1:7429643-7429662 None:intergenic 30.0%
! TTACTCTAAACAAGGTACTA+AGG - chr1_1:7429644-7429663 Msa0004990:CDS 30.0%
! TACTCTAAACAAGGTACTAA+GGG - chr1_1:7429645-7429664 Msa0004990:CDS 30.0%
TGGCCATGCAAATTATTTAA+AGG + chr1_1:7429725-7429744 None:intergenic 30.0%
ATGAGAGAATTAAAACCTTG+TGG + chr1_1:7429745-7429764 None:intergenic 30.0%
!!! ACAAGGTTTTAATTCTCTCA+TGG - chr1_1:7429744-7429763 Msa0004990:intron 30.0%
TCTTCAAATTCTACACAACT+TGG + chr1_1:7429848-7429867 None:intergenic 30.0%
CAATCTGAGTCAAGATATTA+AGG + chr1_1:7430163-7430182 None:intergenic 30.0%
AGAAACAAAAGGGAGATATA+TGG + chr1_1:7430258-7430277 None:intergenic 30.0%
! TTCATCCCATAATCCTTTTA+AGG + chr1_1:7430285-7430304 None:intergenic 30.0%
!! TATGATGGACATGGAAAAAA+TGG - chr1_1:7430327-7430346 Msa0004990:intron 30.0%
TGTTGTATTAATCTCCTCAA+GGG + chr1_1:7430415-7430434 None:intergenic 30.0%
TTGTTGTATTAATCTCCTCA+AGG + chr1_1:7430416-7430435 None:intergenic 30.0%
!! TTTCAATGTAATGGATGAAG+AGG - chr1_1:7430509-7430528 Msa0004990:intron 30.0%
AATCTAGATTGTTCTTGTAG+TGG - chr1_1:7430546-7430565 Msa0004990:intron 30.0%
!!! TGGCTTTTAGTTTTTCATCT+TGG + chr1_1:7430738-7430757 None:intergenic 30.0%
ATAATTGAAAAGAAGCTGCA+TGG + chr1_1:7430819-7430838 None:intergenic 30.0%
! TGCAGCTTCTTTTCAATTAT+TGG - chr1_1:7430819-7430838 Msa0004990:intron 30.0%
AACTGTTAAACTAAGGTGTA+TGG + chr1_1:7431013-7431032 None:intergenic 30.0%
CAAATAAGAGACTTCTAGAT+AGG - chr1_1:7431069-7431088 Msa0004990:CDS 30.0%
! TGTGTCATTATTGACGTTTA+AGG + chr1_1:7431218-7431237 None:intergenic 30.0%
TTAAACGTCAATAATGACAC+AGG - chr1_1:7431217-7431236 Msa0004990:intron 30.0%
TAAACGTCAATAATGACACA+GGG - chr1_1:7431218-7431237 Msa0004990:intron 30.0%
TCTAAACTAAATTGGAATGC+AGG - chr1_1:7431391-7431410 Msa0004990:intron 30.0%
GATTTCATACTTAAAGACCA+TGG - chr1_1:7431538-7431557 Msa0004990:intron 30.0%
TTATTGCTACACCAGATATT+TGG - chr1_1:7431563-7431582 Msa0004990:intron 30.0%
ATTGGTCACTTGATGTTAAA+CGG + chr1_1:7431594-7431613 None:intergenic 30.0%
CACTTGCAAGAACAATAAAT+TGG + chr1_1:7431612-7431631 None:intergenic 30.0%
TTTATTGTTCTTGCAAGTGA+TGG - chr1_1:7431613-7431632 Msa0004990:intron 30.0%
TTATTGTTCTTGCAAGTGAT+GGG - chr1_1:7431614-7431633 Msa0004990:intron 30.0%
CTTGCATACAACAATTTCAA+TGG - chr1_1:7431662-7431681 Msa0004990:intron 30.0%
TATATGGACAGTGGAAAATT+AGG - chr1_1:7431906-7431925 Msa0004990:CDS 30.0%
! ATGAATCTCTGAAGATGCAA+CGG + chr1_1:7429541-7429560 None:intergenic 35.0%
CATTCTCATCATGAACTTGA+GGG + chr1_1:7429569-7429588 None:intergenic 35.0%
ACATTCTCATCATGAACTTG+AGG + chr1_1:7429570-7429589 None:intergenic 35.0%
! CATGATATTTGAAGCAAGCA+AGG - chr1_1:7429590-7429609 Msa0004990:CDS 35.0%
! AAATAATTTGCATGGCCACA+AGG - chr1_1:7429727-7429746 Msa0004990:intron 35.0%
ATGGTAATCACGAACAAATG+TGG - chr1_1:7430092-7430111 Msa0004990:intron 35.0%
AAGGATTATGGGATGAAAGA+TGG - chr1_1:7430288-7430307 Msa0004990:intron 35.0%
!! ATGAAAGATGGAGCATTTTG+TGG - chr1_1:7430300-7430319 Msa0004990:intron 35.0%
! GCATTTTGTGGTGTTTATGA+TGG - chr1_1:7430312-7430331 Msa0004990:intron 35.0%
!!! TTTTGGCTCAAAATGAGAGA+TGG + chr1_1:7430387-7430406 None:intergenic 35.0%
AGATGGAAAGAAGCTATTCT+TGG - chr1_1:7430483-7430502 Msa0004990:intron 35.0%
TCTTGGAGCTTTCAATGTAA+TGG - chr1_1:7430500-7430519 Msa0004990:intron 35.0%
GAACAATATAAACAGGGTGA+AGG - chr1_1:7430664-7430683 Msa0004990:CDS 35.0%
! GGTCTTATCATAGTTAACCT+TGG - chr1_1:7430685-7430704 Msa0004990:CDS 35.0%
CAAATCAGTGGTCAATTGAA+TGG + chr1_1:7430758-7430777 None:intergenic 35.0%
ATAAGAGACTTCTAGATAGG+TGG - chr1_1:7431072-7431091 Msa0004990:CDS 35.0%
!! AAGAGCGATGCTATTTCTAA+CGG + chr1_1:7431359-7431378 None:intergenic 35.0%
AAGAGAATAAGGAGTTGCAA+CGG - chr1_1:7431421-7431440 Msa0004990:intron 35.0%
AAACGGTGATACCAAATATC+TGG + chr1_1:7431577-7431596 None:intergenic 35.0%
TATTGTTCTTGCAAGTGATG+GGG - chr1_1:7431615-7431634 Msa0004990:intron 35.0%
GGATGTACTAAGTAATGAAG+AGG - chr1_1:7431725-7431744 Msa0004990:intron 35.0%
AAAGAAGTTTCCTTCCTCTA+GGG - chr1_1:7431827-7431846 Msa0004990:CDS 35.0%
ACCACAAAACTTGGAGTATA+TGG - chr1_1:7431890-7431909 Msa0004990:CDS 35.0%
! TCCATATACTCCAAGTTTTG+TGG + chr1_1:7431894-7431913 None:intergenic 35.0%
! ATGAATCTCTGAAGATGCAA+CGG + chr1_1:7429541-7429560 None:intergenic 35.0%
CATTCTCATCATGAACTTGA+GGG + chr1_1:7429569-7429588 None:intergenic 35.0%
ACATTCTCATCATGAACTTG+AGG + chr1_1:7429570-7429589 None:intergenic 35.0%
! CATGATATTTGAAGCAAGCA+AGG - chr1_1:7429590-7429609 Msa0004990:CDS 35.0%
! AAATAATTTGCATGGCCACA+AGG - chr1_1:7429727-7429746 Msa0004990:intron 35.0%
ATGGTAATCACGAACAAATG+TGG - chr1_1:7430092-7430111 Msa0004990:intron 35.0%
AAGGATTATGGGATGAAAGA+TGG - chr1_1:7430288-7430307 Msa0004990:intron 35.0%
!! ATGAAAGATGGAGCATTTTG+TGG - chr1_1:7430300-7430319 Msa0004990:intron 35.0%
! GCATTTTGTGGTGTTTATGA+TGG - chr1_1:7430312-7430331 Msa0004990:intron 35.0%
!!! TTTTGGCTCAAAATGAGAGA+TGG + chr1_1:7430387-7430406 None:intergenic 35.0%
AGATGGAAAGAAGCTATTCT+TGG - chr1_1:7430483-7430502 Msa0004990:intron 35.0%
TCTTGGAGCTTTCAATGTAA+TGG - chr1_1:7430500-7430519 Msa0004990:intron 35.0%
GAACAATATAAACAGGGTGA+AGG - chr1_1:7430664-7430683 Msa0004990:CDS 35.0%
! GGTCTTATCATAGTTAACCT+TGG - chr1_1:7430685-7430704 Msa0004990:CDS 35.0%
CAAATCAGTGGTCAATTGAA+TGG + chr1_1:7430758-7430777 None:intergenic 35.0%
ATAAGAGACTTCTAGATAGG+TGG - chr1_1:7431072-7431091 Msa0004990:CDS 35.0%
!! AAGAGCGATGCTATTTCTAA+CGG + chr1_1:7431359-7431378 None:intergenic 35.0%
AAGAGAATAAGGAGTTGCAA+CGG - chr1_1:7431421-7431440 Msa0004990:intron 35.0%
AAACGGTGATACCAAATATC+TGG + chr1_1:7431577-7431596 None:intergenic 35.0%
TATTGTTCTTGCAAGTGATG+GGG - chr1_1:7431615-7431634 Msa0004990:intron 35.0%
GGATGTACTAAGTAATGAAG+AGG - chr1_1:7431725-7431744 Msa0004990:intron 35.0%
AAAGAAGTTTCCTTCCTCTA+GGG - chr1_1:7431827-7431846 Msa0004990:CDS 35.0%
ACCACAAAACTTGGAGTATA+TGG - chr1_1:7431890-7431909 Msa0004990:CDS 35.0%
! TCCATATACTCCAAGTTTTG+TGG + chr1_1:7431894-7431913 None:intergenic 35.0%
GTTGCATCTTCAGAGATTCA+TGG - chr1_1:7429540-7429559 Msa0004990:CDS 40.0%
TGCTCCGTTTACTCTAAACA+AGG - chr1_1:7429636-7429655 Msa0004990:CDS 40.0%
TCATGATTGAGAGACAAACC+TGG + chr1_1:7429698-7429717 None:intergenic 40.0%
GCAACATTAGTCGCATTTGA+TGG + chr1_1:7429809-7429828 None:intergenic 40.0%
! TTTTGCATGGCTACACTACA+AGG - chr1_1:7429871-7429890 Msa0004990:CDS 40.0%
ATTTCTTGCTTGAATCGCGT+TGG - chr1_1:7430118-7430137 Msa0004990:intron 40.0%
!! TGTGGTGTTTATGATGGACA+TGG - chr1_1:7430318-7430337 Msa0004990:intron 40.0%
TGCTGTAGTTGTCATAAGAC+AGG - chr1_1:7430575-7430594 Msa0004990:intron 40.0%
ATATTGCTCTTGAGTCACCA+AGG + chr1_1:7430705-7430724 None:intergenic 40.0%
GGTGACTCAAGAGCAATATT+AGG - chr1_1:7430706-7430725 Msa0004990:CDS 40.0%
!! ATTGACCACTGATTTGAAGC+CGG - chr1_1:7430762-7430781 Msa0004990:intron 40.0%
AGAATCTTACAAGGCAATCC+CGG + chr1_1:7430784-7430803 None:intergenic 40.0%
TTAAGCTGCTGATGTCTTCA+AGG - chr1_1:7430973-7430992 Msa0004990:CDS 40.0%
! ACTAGTCTATCGTGATGCTT+TGG + chr1_1:7431305-7431324 None:intergenic 40.0%
ATAGACTAGTGAAACTGCAG+CGG - chr1_1:7431315-7431334 Msa0004990:intron 40.0%
CGGTTGTGTTTATGCGTTAA+AGG - chr1_1:7431441-7431460 Msa0004990:intron 40.0%
AAGAGGTTGCATCAATTGTG+TGG - chr1_1:7431742-7431761 Msa0004990:intron 40.0%
CAAAGAAGTTTCCTTCCTCT+AGG - chr1_1:7431826-7431845 Msa0004990:CDS 40.0%
!! AGTTTTGTGGTTTCTTCTGC+AGG + chr1_1:7431881-7431900 None:intergenic 40.0%
GCAGAAGAAACCACAAAACT+TGG - chr1_1:7431881-7431900 Msa0004990:CDS 40.0%
AACTTGGAGTATATGGACAG+TGG - chr1_1:7431897-7431916 Msa0004990:CDS 40.0%
GTTGCATCTTCAGAGATTCA+TGG - chr1_1:7429540-7429559 Msa0004990:CDS 40.0%
TGCTCCGTTTACTCTAAACA+AGG - chr1_1:7429636-7429655 Msa0004990:CDS 40.0%
TCATGATTGAGAGACAAACC+TGG + chr1_1:7429698-7429717 None:intergenic 40.0%
GCAACATTAGTCGCATTTGA+TGG + chr1_1:7429809-7429828 None:intergenic 40.0%
! TTTTGCATGGCTACACTACA+AGG - chr1_1:7429871-7429890 Msa0004990:CDS 40.0%
ATTTCTTGCTTGAATCGCGT+TGG - chr1_1:7430118-7430137 Msa0004990:intron 40.0%
!! TGTGGTGTTTATGATGGACA+TGG - chr1_1:7430318-7430337 Msa0004990:intron 40.0%
TGCTGTAGTTGTCATAAGAC+AGG - chr1_1:7430575-7430594 Msa0004990:intron 40.0%
ATATTGCTCTTGAGTCACCA+AGG + chr1_1:7430705-7430724 None:intergenic 40.0%
GGTGACTCAAGAGCAATATT+AGG - chr1_1:7430706-7430725 Msa0004990:CDS 40.0%
!! ATTGACCACTGATTTGAAGC+CGG - chr1_1:7430762-7430781 Msa0004990:intron 40.0%
AGAATCTTACAAGGCAATCC+CGG + chr1_1:7430784-7430803 None:intergenic 40.0%
TTAAGCTGCTGATGTCTTCA+AGG - chr1_1:7430973-7430992 Msa0004990:CDS 40.0%
! ACTAGTCTATCGTGATGCTT+TGG + chr1_1:7431305-7431324 None:intergenic 40.0%
ATAGACTAGTGAAACTGCAG+CGG - chr1_1:7431315-7431334 Msa0004990:intron 40.0%
CGGTTGTGTTTATGCGTTAA+AGG - chr1_1:7431441-7431460 Msa0004990:intron 40.0%
AAGAGGTTGCATCAATTGTG+TGG - chr1_1:7431742-7431761 Msa0004990:intron 40.0%
CAAAGAAGTTTCCTTCCTCT+AGG - chr1_1:7431826-7431845 Msa0004990:CDS 40.0%
!! AGTTTTGTGGTTTCTTCTGC+AGG + chr1_1:7431881-7431900 None:intergenic 40.0%
GCAGAAGAAACCACAAAACT+TGG - chr1_1:7431881-7431900 Msa0004990:CDS 40.0%
AACTTGGAGTATATGGACAG+TGG - chr1_1:7431897-7431916 Msa0004990:CDS 40.0%
!!! TCTCCTCAAGGGCATTCTTT+TGG + chr1_1:7430404-7430423 None:intergenic 45.0%
!! TTGACCACTGATTTGAAGCC+GGG - chr1_1:7430763-7430782 Msa0004990:intron 45.0%
CAGGCGAAGCAAAGAGAATA+AGG - chr1_1:7431410-7431429 Msa0004990:intron 45.0%
AACCACATGTCCAACGAGTA+TGG - chr1_1:7431467-7431486 Msa0004990:intron 45.0%
AACCATACTCGTTGGACATG+TGG + chr1_1:7431472-7431491 None:intergenic 45.0%
CTGGTGTAGCAATAACACCA+TGG + chr1_1:7431558-7431577 None:intergenic 45.0%
GGTTGCATCAATTGTGTGGA+TGG - chr1_1:7431746-7431765 Msa0004990:intron 45.0%
CAATCATCTACCCTAGAGGA+AGG + chr1_1:7431840-7431859 None:intergenic 45.0%
GTGGTTTCTTCTGCAGGAAA+TGG + chr1_1:7431875-7431894 None:intergenic 45.0%
!!! TCTCCTCAAGGGCATTCTTT+TGG + chr1_1:7430404-7430423 None:intergenic 45.0%
!! TTGACCACTGATTTGAAGCC+GGG - chr1_1:7430763-7430782 Msa0004990:intron 45.0%
CAGGCGAAGCAAAGAGAATA+AGG - chr1_1:7431410-7431429 Msa0004990:intron 45.0%
AACCACATGTCCAACGAGTA+TGG - chr1_1:7431467-7431486 Msa0004990:intron 45.0%
AACCATACTCGTTGGACATG+TGG + chr1_1:7431472-7431491 None:intergenic 45.0%
CTGGTGTAGCAATAACACCA+TGG + chr1_1:7431558-7431577 None:intergenic 45.0%
GGTTGCATCAATTGTGTGGA+TGG - chr1_1:7431746-7431765 Msa0004990:intron 45.0%
CAATCATCTACCCTAGAGGA+AGG + chr1_1:7431840-7431859 None:intergenic 45.0%
GTGGTTTCTTCTGCAGGAAA+TGG + chr1_1:7431875-7431894 None:intergenic 45.0%
GGTGAAGAGAAGCAGCATCT+TGG + chr1_1:7429677-7429696 None:intergenic 50.0%
! AGATGCTGCTTCTCTTCACC+AGG - chr1_1:7429677-7429696 Msa0004990:CDS 50.0%
GAGCCAAAAGAATGCCCTTG+AGG - chr1_1:7430398-7430417 Msa0004990:intron 50.0%
CAATCCCGGCTTCAAATCAG+TGG + chr1_1:7430770-7430789 None:intergenic 50.0%
CATTGGGCAACCATACTCGT+TGG + chr1_1:7431480-7431499 None:intergenic 50.0%
TTGCCCAATGAGAACTACCC+TGG - chr1_1:7431490-7431509 Msa0004990:intron 50.0%
AGGCCAGGGTAGTTCTCATT+GGG + chr1_1:7431496-7431515 None:intergenic 50.0%
TAGGCCAGGGTAGTTCTCAT+TGG + chr1_1:7431497-7431516 None:intergenic 50.0%
CTAGCCATGTCTCGAGCTTT+CGG - chr1_1:7431514-7431533 Msa0004990:intron 50.0%
ATCTCCGAAAGCTCGAGACA+TGG + chr1_1:7431521-7431540 None:intergenic 50.0%
GTGGATGGTAGAGAGTGAAG+AGG - chr1_1:7431761-7431780 Msa0004990:CDS 50.0%
AGAGTGAAGAGGAAGCTGCA+AGG - chr1_1:7431772-7431791 Msa0004990:CDS 50.0%
GAGTGAAGAGGAAGCTGCAA+GGG - chr1_1:7431773-7431792 Msa0004990:CDS 50.0%
GGTGCAATCATCTACCCTAG+AGG + chr1_1:7431844-7431863 None:intergenic 50.0%
TAGGGTAGATGATTGCACCG+TGG - chr1_1:7431845-7431864 Msa0004990:CDS 50.0%
CTGCAGGAAATGGCAAACCA+CGG + chr1_1:7431865-7431884 None:intergenic 50.0%
GGTGAAGAGAAGCAGCATCT+TGG + chr1_1:7429677-7429696 None:intergenic 50.0%
! AGATGCTGCTTCTCTTCACC+AGG - chr1_1:7429677-7429696 Msa0004990:CDS 50.0%
GAGCCAAAAGAATGCCCTTG+AGG - chr1_1:7430398-7430417 Msa0004990:intron 50.0%
CAATCCCGGCTTCAAATCAG+TGG + chr1_1:7430770-7430789 None:intergenic 50.0%
CATTGGGCAACCATACTCGT+TGG + chr1_1:7431480-7431499 None:intergenic 50.0%
TTGCCCAATGAGAACTACCC+TGG - chr1_1:7431490-7431509 Msa0004990:intron 50.0%
AGGCCAGGGTAGTTCTCATT+GGG + chr1_1:7431496-7431515 None:intergenic 50.0%
TAGGCCAGGGTAGTTCTCAT+TGG + chr1_1:7431497-7431516 None:intergenic 50.0%
CTAGCCATGTCTCGAGCTTT+CGG - chr1_1:7431514-7431533 Msa0004990:intron 50.0%
ATCTCCGAAAGCTCGAGACA+TGG + chr1_1:7431521-7431540 None:intergenic 50.0%
GTGGATGGTAGAGAGTGAAG+AGG - chr1_1:7431761-7431780 Msa0004990:CDS 50.0%
AGAGTGAAGAGGAAGCTGCA+AGG - chr1_1:7431772-7431791 Msa0004990:CDS 50.0%
GAGTGAAGAGGAAGCTGCAA+GGG - chr1_1:7431773-7431792 Msa0004990:CDS 50.0%
GGTGCAATCATCTACCCTAG+AGG + chr1_1:7431844-7431863 None:intergenic 50.0%
TAGGGTAGATGATTGCACCG+TGG - chr1_1:7431845-7431864 Msa0004990:CDS 50.0%
CTGCAGGAAATGGCAAACCA+CGG + chr1_1:7431865-7431884 None:intergenic 50.0%
CGAAAGCTCGAGACATGGCT+AGG + chr1_1:7431516-7431535 None:intergenic 55.0%
CTTCTTTGCCCATGCAGCTG+TGG + chr1_1:7431814-7431833 None:intergenic 55.0%
CGAAAGCTCGAGACATGGCT+AGG + chr1_1:7431516-7431535 None:intergenic 55.0%
CTTCTTTGCCCATGCAGCTG+TGG + chr1_1:7431814-7431833 None:intergenic 55.0%
CTCGAGACATGGCTAGGCCA+GGG + chr1_1:7431510-7431529 None:intergenic 60.0%
AGAGGAAGCTGCAAGGGCAG+TGG - chr1_1:7431779-7431798 Msa0004990:CDS 60.0%
TGGAAGCAGCCACAGCTGCA+TGG - chr1_1:7431802-7431821 Msa0004990:CDS 60.0%
GGAAGCAGCCACAGCTGCAT+GGG - chr1_1:7431803-7431822 Msa0004990:CDS 60.0%
CTCGAGACATGGCTAGGCCA+GGG + chr1_1:7431510-7431529 None:intergenic 60.0%
AGAGGAAGCTGCAAGGGCAG+TGG - chr1_1:7431779-7431798 Msa0004990:CDS 60.0%
TGGAAGCAGCCACAGCTGCA+TGG - chr1_1:7431802-7431821 Msa0004990:CDS 60.0%
GGAAGCAGCCACAGCTGCAT+GGG - chr1_1:7431803-7431822 Msa0004990:CDS 60.0%
GCTCGAGACATGGCTAGGCC+AGG + chr1_1:7431511-7431530 None:intergenic 65.0%
GGAAGCTGCAAGGGCAGTGG+TGG - chr1_1:7431782-7431801 Msa0004990:CDS 65.0%
GCTCGAGACATGGCTAGGCC+AGG + chr1_1:7431511-7431530 None:intergenic 65.0%
GGAAGCTGCAAGGGCAGTGG+TGG - chr1_1:7431782-7431801 Msa0004990:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 7429522 7431932 7429522 ID=Msa0004990;Name=Msa0004990
chr1_1 mRNA 7429522 7431932 7429522 ID=Msa0004990-mRNA-1;Parent=Msa0004990;Name=Msa0004990-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|5|0|344
chr1_1 exon 7431756 7431932 7431756 ID=Msa0004990-mRNA-1:exon:2631;Parent=Msa0004990-mRNA-1
chr1_1 exon 7430858 7431163 7430858 ID=Msa0004990-mRNA-1:exon:2630;Parent=Msa0004990-mRNA-1
chr1_1 exon 7430661 7430775 7430661 ID=Msa0004990-mRNA-1:exon:2629;Parent=Msa0004990-mRNA-1
chr1_1 exon 7429818 7430041 7429818 ID=Msa0004990-mRNA-1:exon:2628;Parent=Msa0004990-mRNA-1
chr1_1 exon 7429522 7429734 7429522 ID=Msa0004990-mRNA-1:exon:2627;Parent=Msa0004990-mRNA-1
chr1_1 CDS 7431756 7431932 7431756 ID=Msa0004990-mRNA-1:cds;Parent=Msa0004990-mRNA-1
chr1_1 CDS 7430858 7431163 7430858 ID=Msa0004990-mRNA-1:cds;Parent=Msa0004990-mRNA-1
chr1_1 CDS 7430661 7430775 7430661 ID=Msa0004990-mRNA-1:cds;Parent=Msa0004990-mRNA-1
chr1_1 CDS 7429818 7430041 7429818 ID=Msa0004990-mRNA-1:cds;Parent=Msa0004990-mRNA-1
chr1_1 CDS 7429522 7429734 7429522 ID=Msa0004990-mRNA-1:cds;Parent=Msa0004990-mRNA-1
Gene Sequence

>Msa0004990

ATGGGTATCTGCATATCCGTTGCATCTTCAGAGATTCATGGAATCCCTCAAGTTCATGATGAGAATGTCATGATATTTGAAGCAAGCAAGGTCCAAAATGAGACTAAGAGACTTTGCTCCGTTTACTCTAAACAAGGTACTAAGGGTCTCAACCAAGATGCTGCTTCTCTTCACCAGGATTATGGGATGAAAGATGGAGCATTTTGTGGTGTTTATGATGGACATGGAAAAAATGGACATATAGTGAGCAAAATAGTAAACAATACTTTACCATCTCTCATTTTGAGCCAAAAGAATGCCCTTGAGGAGATTAATACAACAAAAAATGGTGTTGACAACAAACAAAACAAATTTTCAAACAACTATCTAAGATGGAAAGAAGCTATTCTTGGAGCTTTCAATGTAATGGATGAAGAGGTGAAGCAACAAGAGAATCTAGATTGTTCTTGTAGTGGAACTACTGCTGTAGTTGTCATAAGACAGGGTGAAGGTCTTATCATAGTTAACCTTGGTGACTCAAGAGCAATATTAGGAACAATCCAAGATGAAAAACTAAAAGCCATTCAATTGACCACTGATTTGAAGCCGGGATTGCCTTGCGAAGCAAAGAGAATAAGGAGTTGCAACGGTTGTGTTTATGCGTTAAAGGAAGAACCACATGTCCAACGAGTATGGTTGCCCAATGAGAACTACCCTGGCCTAGCCATGTCTCGAGCTTTCGGAGATTTCATACTTAAAGACCATGGTGTTATTGCTACACCAGATATTTGGTATCACCGTTTAACATCAAGTGACCAATTTATTGTTCTTGCAAGTGATGGGGTGTGGGATGTACTAAGTAATGAAGAGGTTGCATCAATTGTGTGGATGGTAGAGAGTGAAGAGGAAGCTGCAAGGGCAGTGGTGGAAGCAGCCACAGCTGCATGGGCAAAGAAGTTTCCTTCCTCTAGGGTAGATGATTGCACCGTGGTTTGCCATTTCCTGCAGAAGAAACCACAAAACTTGGAGTATATGGACAGTGGAAAATTAGGTTAA

Protein sequence

>Msa0004990

MGICISVASSEIHGIPQVHDENVMIFEASKVQNETKRLCSVYSKQGTKGLNQDAASLHQDYGMKDGAFCGVYDGHGKNGHIVSKIVNNTLPSLILSQKNALEEINTTKNGVDNKQNKFSNNYLRWKEAILGAFNVMDEEVKQQENLDCSCSGTTAVVVIRQGEGLIIVNLGDSRAILGTIQDEKLKAIQLTTDLKPGLPCEAKRIRSCNGCVYALKEEPHVQRVWLPNENYPGLAMSRAFGDFILKDHGVIATPDIWYHRLTSSDQFIVLASDGVWDVLSNEEVASIVWMVESEEEAARAVVEAATAAWAKKFPSSRVDDCTVVCHFLQKKPQNLEYMDSGKLG*