AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0789410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0789410 MtrunA17_Chr8g0365241 94.118 357 21 0 1 357 6 362 0.0 696
Msa0789410 MtrunA17_Chr5g0420981 94.134 358 20 1 1 357 1 358 0.0 686
Msa0789410 MtrunA17_Chr5g0420951 81.564 358 65 1 1 357 1 358 0.0 612
Msa0789410 MtrunA17_Chr5g0423191 67.898 352 112 1 6 357 1 351 0.0 509
Msa0789410 MtrunA17_Chr5g0423251 66.571 350 116 1 8 357 3 351 1.41e-176 494
Msa0789410 MtrunA17_Chr5g0421101 68.103 348 110 1 10 357 5 351 8.40e-176 492
Msa0789410 MtrunA17_Chr5g0421041 65.714 350 117 2 8 357 3 349 2.61e-175 491
Msa0789410 MtrunA17_Chr5g0420941 65.418 347 119 1 11 357 4 349 6.12e-175 489
Msa0789410 MtrunA17_Chr5g0420901 65.043 349 120 2 10 357 3 350 2.22e-173 486
Msa0789410 MtrunA17_Chr5g0423221 66.189 349 116 2 10 357 29 376 6.73e-170 478
Msa0789410 MtrunA17_Chr5g0421011 65.341 352 121 1 6 357 1 351 1.90e-168 473
Msa0789410 MtrunA17_Chr5g0423211 63.610 349 122 3 11 356 6 352 8.86e-167 469
Msa0789410 MtrunA17_Chr5g0421091 63.793 348 124 2 11 357 4 350 9.99e-167 469
Msa0789410 MtrunA17_Chr5g0423201 64.470 349 122 2 10 357 5 352 1.11e-166 469
Msa0789410 MtrunA17_Chr8g0375671 60.556 360 139 1 1 357 1 360 3.20e-163 461
Msa0789410 MtrunA17_Chr2g0314401 58.092 346 144 1 10 354 9 354 6.74e-154 436
Msa0789410 MtrunA17_Chr8g0375571 59.078 347 139 1 11 354 4 350 4.09e-151 429
Msa0789410 MtrunA17_Chr8g0375601 58.333 348 140 2 15 357 8 355 1.03e-150 429
Msa0789410 MtrunA17_Chr2g0314391 58.166 349 145 1 10 357 28 376 2.51e-150 428
Msa0789410 MtrunA17_Chr2g0314381 57.714 350 146 2 10 357 34 383 1.05e-148 424
Msa0789410 MtrunA17_Chr1g0162191 54.986 351 151 3 6 354 5 350 3.60e-137 394
Msa0789410 MtrunA17_Chr5g0420721 66.800 250 83 0 108 357 4 253 3.52e-128 368
Msa0789410 MtrunA17_Chr8g0375681 59.854 274 110 0 84 357 15 288 1.81e-123 357
Msa0789410 MtrunA17_Chr8g0375701 44.675 338 184 3 18 354 20 355 3.74e-110 325
Msa0789410 MtrunA17_Chr2g0314371 51.735 317 127 4 10 302 9 323 1.01e-109 323
Msa0789410 MtrunA17_Chr2g0296371 40.462 346 199 4 15 355 14 357 5.77e-96 290
Msa0789410 MtrunA17_Chr3g0087031 40.456 351 203 4 7 354 13 360 2.65e-95 288
Msa0789410 MtrunA17_Chr7g0239101 38.841 345 209 2 12 355 14 357 2.98e-94 285
Msa0789410 MtrunA17_Chr7g0239821 38.483 356 211 3 4 355 15 366 5.10e-94 285
Msa0789410 MtrunA17_Chr7g0239111 37.931 348 214 2 9 355 11 357 1.21e-91 278
Msa0789410 MtrunA17_Chr7g0239121 37.069 348 216 3 12 357 10 356 6.24e-87 266
Msa0789410 MtrunA17_Chr7g0242551 36.585 328 197 4 18 334 15 342 3.94e-81 251
Msa0789410 MtrunA17_Chr7g0232161 41.219 279 162 2 12 289 19 296 4.16e-81 250
Msa0789410 MtrunA17_Chr5g0420881 69.388 147 45 0 211 357 1 147 4.95e-80 241
Msa0789410 MtrunA17_Chr5g0437181 36.223 323 200 3 18 334 14 336 8.05e-80 248
Msa0789410 MtrunA17_Chr3g0113641 33.626 342 221 3 18 353 15 356 1.59e-75 237
Msa0789410 MtrunA17_Chr4g0006371 35.015 337 199 4 18 334 14 350 1.61e-75 237
Msa0789410 MtrunA17_Chr3g0145171 38.235 306 185 3 51 354 51 354 9.98e-75 235
Msa0789410 MtrunA17_Chr3g0109041 35.057 348 214 7 18 356 10 354 1.51e-71 226
Msa0789410 MtrunA17_Chr3g0128001 37.304 319 195 3 27 344 13 327 1.44e-70 223
Msa0789410 MtrunA17_Chr7g0239071 33.446 296 194 2 62 357 12 304 3.02e-69 219
Msa0789410 MtrunA17_Chr5g0426891 36.494 348 203 9 17 354 3 342 1.50e-68 218
Msa0789410 MtrunA17_Chr7g0239091 33.041 342 213 5 16 354 123 451 1.20e-66 217
Msa0789410 MtrunA17_Chr8g0370721 34.783 345 214 5 17 354 14 354 2.45e-66 213
Msa0789410 MtrunA17_Chr8g0370711 35.621 306 193 3 51 354 51 354 7.12e-65 209
Msa0789410 MtrunA17_Chr8g0345831 35.762 302 187 4 52 350 42 339 2.86e-64 207
Msa0789410 MtrunA17_Chr5g0420891 63.291 158 56 2 10 166 3 159 1.82e-63 199
Msa0789410 MtrunA17_Chr8g0375641 56.213 169 71 1 1 166 1 169 7.58e-63 198
Msa0789410 MtrunA17_Chr1g0179801 32.000 350 224 6 17 354 26 373 2.71e-62 203
Msa0789410 MtrunA17_Chr8g0375661 56.329 158 66 1 12 166 12 169 1.96e-60 192
Msa0789410 MtrunA17_Chr4g0064781 34.076 314 197 5 46 356 44 350 3.23e-60 197
Msa0789410 MtrunA17_Chr5g0398291 34.675 323 196 6 18 326 8 329 3.39e-60 197
Msa0789410 MtrunA17_Chr7g0265221 31.534 352 212 6 26 354 35 380 1.12e-58 194
Msa0789410 MtrunA17_Chr3g0114861 30.723 332 219 6 15 341 3 328 1.75e-56 187
Msa0789410 MtrunA17_Chr3g0145181 33.742 326 205 6 17 334 12 334 2.35e-56 187
Msa0789410 MtrunA17_Chr5g0424201 31.307 329 215 7 13 335 4 327 1.62e-54 182
Msa0789410 MtrunA17_Chr3g0125201 33.548 310 191 4 52 355 3 303 5.33e-54 180
Msa0789410 MtrunA17_Chr7g0266651 28.857 350 231 8 17 356 23 364 3.39e-53 179
Msa0789410 MtrunA17_Chr5g0412651 33.837 331 197 10 25 342 12 333 7.84e-53 178
Msa0789410 MtrunA17_Chr4g0050031 31.624 351 221 9 17 354 22 366 1.70e-52 177
Msa0789410 MtrunA17_Chr4g0045411 32.441 299 183 6 52 334 30 325 3.55e-52 176
Msa0789410 MtrunA17_Chr3g0145201 35.374 294 181 5 47 334 679 969 6.33e-52 185
Msa0789410 MtrunA17_Chr2g0332191 30.422 332 208 8 26 344 25 346 1.91e-51 175
Msa0789410 MtrunA17_Chr3g0121141 29.766 299 195 6 53 346 5 293 1.27e-50 171
Msa0789410 MtrunA17_Chr2g0289341 29.431 299 198 5 53 346 5 295 2.20e-50 171
Msa0789410 MtrunA17_Chr3g0126741 33.657 309 191 6 52 353 59 360 2.38e-50 172
Msa0789410 MtrunA17_Chr1g0162361 31.250 320 195 7 33 335 8 319 3.15e-50 171
Msa0789410 MtrunA17_Chr1g0187821 31.085 341 212 9 27 354 40 370 3.60e-50 172
Msa0789410 MtrunA17_Chr8g0371931 31.000 300 197 6 51 344 38 333 6.03e-50 171
Msa0789410 MtrunA17_Chr1g0187831 31.105 344 211 9 26 353 40 373 7.56e-50 171
Msa0789410 MtrunA17_Chr1g0204181 32.759 290 184 4 51 330 58 346 8.09e-50 171
Msa0789410 MtrunA17_Chr5g0412681 33.123 317 194 9 32 341 14 319 8.36e-50 170
Msa0789410 MtrunA17_Chr8g0351101 32.166 314 201 5 26 330 30 340 2.50e-49 169
Msa0789410 MtrunA17_Chr8g0371921 31.333 300 196 6 51 344 38 333 2.76e-49 169
Msa0789410 MtrunA17_Chr4g0045471 32.226 301 171 9 52 326 26 319 5.35e-49 168
Msa0789410 MtrunA17_Chr5g0439011 29.470 302 196 5 53 346 6 298 6.67e-49 167
Msa0789410 MtrunA17_Chr1g0162351 30.667 300 178 7 52 326 69 363 9.05e-49 169
Msa0789410 MtrunA17_Chr6g0474391 31.834 289 186 4 52 330 64 351 1.58e-48 167
Msa0789410 MtrunA17_Chr2g0311761 30.725 345 228 5 17 354 32 372 2.32e-48 167
Msa0789410 MtrunA17_Chr8g0336851 29.661 354 231 8 1 345 11 355 2.40e-48 167
Msa0789410 MtrunA17_Chr1g0161041 32.573 307 192 8 50 350 94 391 2.59e-48 167
Msa0789410 MtrunA17_Chr5g0424211 31.661 319 202 9 15 323 3 315 5.78e-48 165
Msa0789410 MtrunA17_Chr1g0162321 31.313 297 174 7 52 323 69 360 8.23e-48 166
Msa0789410 MtrunA17_Chr8g0354261 28.329 353 234 8 17 357 32 377 1.49e-47 165
Msa0789410 MtrunA17_Chr7g0220001 31.661 319 207 5 27 341 16 327 2.29e-47 163
Msa0789410 MtrunA17_Chr7g0250511 26.901 342 243 6 17 354 13 351 3.35e-47 163
Msa0789410 MtrunA17_Chr2g0311921 28.653 349 230 6 17 354 18 358 7.21e-47 162
Msa0789410 MtrunA17_Chr6g0455481 32.308 325 198 9 27 341 17 329 8.82e-47 162
Msa0789410 MtrunA17_Chr7g0220011 31.153 321 206 6 27 341 14 325 9.52e-47 162
Msa0789410 MtrunA17_Chr5g0405411 32.967 273 168 6 51 314 38 304 1.30e-46 162
Msa0789410 MtrunA17_Chr3g0102041 33.058 242 159 2 75 314 64 304 1.45e-46 162
Msa0789410 MtrunA17_Chr5g0412671 32.063 315 189 6 43 342 29 333 1.61e-46 161
Msa0789410 MtrunA17_Chr2g0311831 29.855 345 230 6 17 354 32 371 2.90e-46 161
Msa0789410 MtrunA17_Chr8g0336861 28.736 348 230 8 17 354 27 366 3.04e-46 161
Msa0789410 MtrunA17_Chr8g0354241 28.205 351 233 8 17 355 32 375 3.48e-46 161
Msa0789410 MtrunA17_Chr8g0336751 29.290 338 223 8 17 345 58 388 4.68e-46 161
Msa0789410 MtrunA17_Chr8g0336761 29.586 338 220 8 17 345 27 355 5.51e-46 160
Msa0789410 MtrunA17_Chr8g0336781 29.080 337 224 7 17 345 62 391 1.28e-45 160
Msa0789410 MtrunA17_Chr8g0336631 29.674 337 222 8 17 345 27 356 1.32e-45 159
Msa0789410 MtrunA17_Chr4g0045441 30.678 339 199 8 39 346 5 338 3.05e-45 158
Msa0789410 MtrunA17_Chr8g0348081 28.869 336 225 6 17 345 27 355 3.40e-45 158
Msa0789410 MtrunA17_Chr4g0055591 28.940 349 226 8 17 354 24 361 3.75e-45 158
Msa0789410 MtrunA17_Chr6g0472861 28.732 355 232 8 17 356 27 375 6.26e-45 158
Msa0789410 MtrunA17_Chr1g0187811 29.121 364 231 9 7 354 141 493 9.00e-45 160
Msa0789410 MtrunA17_Chr1g0161111 30.836 347 219 11 17 353 95 430 1.28e-44 158
Msa0789410 MtrunA17_Chr2g0311691 29.217 332 218 7 17 336 26 352 1.44e-44 157
Msa0789410 MtrunA17_Chr8g0375591 58.268 127 49 2 12 134 5 131 5.83e-44 148
Msa0789410 MtrunA17_Chr4g0045451 28.834 326 200 8 39 335 5 327 6.23e-44 155
Msa0789410 MtrunA17_Chr1g0161081 31.922 307 200 6 50 353 71 371 6.40e-44 155
Msa0789410 MtrunA17_Chr7g0265351 31.661 319 201 8 41 350 23 333 7.38e-44 154
Msa0789410 MtrunA17_Chr3g0125421 31.596 307 186 8 51 339 35 335 8.67e-44 154
Msa0789410 MtrunA17_Chr2g0311711 28.869 336 219 7 17 340 30 357 9.03e-44 155
Msa0789410 MtrunA17_Chr3g0093761 30.747 348 212 10 17 350 17 349 9.51e-44 154
Msa0789410 MtrunA17_Chr3g0130391 30.503 318 208 6 29 336 45 359 1.24e-43 155
Msa0789410 MtrunA17_Chr2g0311741 28.797 316 210 6 35 343 10 317 2.13e-43 152
Msa0789410 MtrunA17_Chr1g0184161 32.215 298 185 6 52 341 38 326 3.29e-43 152
Msa0789410 MtrunA17_Chr2g0311681 28.012 332 222 7 17 336 26 352 5.52e-43 152
Msa0789410 MtrunA17_Chr4g0066121 29.630 324 217 7 17 334 27 345 1.46e-42 151
Msa0789410 MtrunA17_Chr1g0184101 31.288 326 200 9 26 339 11 324 1.47e-42 151
Msa0789410 MtrunA17_Chr7g0235951 27.841 352 230 8 17 354 32 373 1.59e-42 151
Msa0789410 MtrunA17_Chr1g0191201 32.042 284 172 6 51 319 52 329 3.23e-42 150
Msa0789410 MtrunA17_Chr1g0184111 29.940 334 216 8 23 347 8 332 3.25e-42 150
Msa0789410 MtrunA17_Chr2g0285931 29.808 312 196 9 45 343 21 322 6.46e-42 149
Msa0789410 MtrunA17_Chr4g0068891 33.113 302 181 10 52 343 20 310 7.84e-42 148
Msa0789410 MtrunA17_Chr3g0093741 30.861 337 203 11 29 350 29 350 1.30e-41 149
Msa0789410 MtrunA17_Chr3g0093751 31.454 337 201 11 29 350 29 350 1.55e-41 148
Msa0789410 MtrunA17_Chr1g0148771 29.766 299 194 8 52 347 63 348 4.85e-41 147
Msa0789410 MtrunA17_Chr2g0311701 27.778 342 224 7 17 343 32 365 5.91e-41 147
Msa0789410 MtrunA17_Chr7g0225881 27.566 341 229 8 17 345 27 361 9.68e-41 147
Msa0789410 MtrunA17_Chr1g0184121 29.912 341 220 9 23 356 8 336 2.03e-40 145
Msa0789410 MtrunA17_Chr8g0384461 29.595 321 209 7 27 336 24 338 2.32e-40 145
Msa0789410 MtrunA17_Chr4g0045431 30.909 275 156 6 52 300 26 292 8.08e-40 144
Msa0789410 MtrunA17_Chr2g0311631 28.529 340 226 7 17 346 21 353 1.24e-39 144
Msa0789410 MtrunA17_Chr1g0184151 29.568 301 191 7 51 341 37 326 5.41e-39 141
Msa0789410 MtrunA17_Chr6g0488511 29.091 275 181 5 52 320 3 269 5.95e-39 140
Msa0789410 MtrunA17_Chr2g0319491 27.852 298 191 7 51 337 32 316 6.30e-39 141
Msa0789410 MtrunA17_Chr4g0045461 29.938 324 198 7 39 335 5 326 1.08e-37 139
Msa0789410 MtrunA17_Chr2g0311861 26.744 344 222 6 17 354 28 347 3.00e-37 137
Msa0789410 MtrunA17_Chr8g0358941 28.660 321 203 10 51 356 26 335 4.84e-37 136
Msa0789410 MtrunA17_Chr3g0114871 31.502 273 176 8 18 284 7 274 5.30e-37 134
Msa0789410 MtrunA17_Chr1g0184241 26.901 342 221 7 17 345 33 358 7.99e-37 136
Msa0789410 MtrunA17_Chr4g0066991 27.300 337 213 6 17 345 32 344 8.27e-37 136
Msa0789410 MtrunA17_Chr8g0364471 25.731 342 232 8 17 345 32 364 1.94e-36 135
Msa0789410 MtrunA17_Chr2g0313111 29.932 294 181 10 33 318 14 290 2.39e-36 134
Msa0789410 MtrunA17_Chr1g0170631 35.897 195 120 3 166 357 3 195 3.19e-36 130
Msa0789410 MtrunA17_Chr1g0167911 28.909 339 221 7 17 345 19 347 3.37e-36 134
Msa0789410 MtrunA17_Chr1g0167961 29.573 328 212 7 17 334 34 352 2.75e-35 132
Msa0789410 MtrunA17_Chr7g0236011 26.136 352 236 10 17 354 32 373 8.48e-35 131
Msa0789410 MtrunA17_Chr1g0167951 28.274 336 226 6 17 345 19 346 2.48e-34 129
Msa0789410 MtrunA17_Chr8g0375581 62.791 86 32 0 187 272 1 86 1.43e-33 119
Msa0789410 MtrunA17_Chr8g0335411 26.301 365 219 10 17 354 32 373 2.47e-33 127
Msa0789410 MtrunA17_Chr1g0167931 26.957 345 200 6 17 354 19 318 3.08e-33 125
Msa0789410 MtrunA17_Chr7g0247991 25.360 347 245 8 17 354 32 373 6.19e-33 126
Msa0789410 MtrunA17_Chr4g0052251 29.344 259 168 7 74 321 45 299 6.55e-33 125
Msa0789410 MtrunA17_Chr4g0053251 30.034 293 177 7 51 319 7 295 2.65e-32 123
Msa0789410 MtrunA17_Chr3g0105281 29.730 259 161 6 52 302 34 279 3.94e-32 122
Msa0789410 MtrunA17_Chr4g0064771 34.595 185 114 3 167 348 27 207 7.07e-32 119
Msa0789410 MtrunA17_Chr4g0075471 34.375 160 97 3 181 338 5 158 1.25e-30 114
Msa0789410 MtrunA17_Chr1g0194321 26.911 327 207 11 52 357 20 335 2.21e-30 118
Msa0789410 MtrunA17_Chr4g0011311 28.364 275 183 6 6 275 23 288 2.58e-30 117
Msa0789410 MtrunA17_Chr2g0314361 59.259 81 33 0 276 356 1 81 7.87e-30 109
Msa0789410 MtrunA17_Chr7g0235981 26.354 277 193 4 84 354 56 327 9.00e-30 116
Msa0789410 MtrunA17_Chr3g0126761 38.926 149 89 2 209 357 89 235 1.75e-29 113
Msa0789410 MtrunA17_Chr5g0420731 60.714 84 32 1 6 89 1 83 2.35e-29 109
Msa0789410 MtrunA17_Chr3g0092531 26.518 313 204 9 50 357 4 295 1.11e-28 113
Msa0789410 MtrunA17_Chr2g0293931 33.846 195 116 7 167 350 8 200 3.05e-28 109
Msa0789410 MtrunA17_Chr8g0384481 26.441 295 201 7 29 313 38 326 3.80e-28 113
Msa0789410 MtrunA17_Chr5g0394071 31.928 166 106 2 169 334 5 163 4.39e-27 105
Msa0789410 MtrunA17_Chr7g0233661 38.095 126 71 2 209 334 19 137 6.63e-27 104
Msa0789410 MtrunA17_Chr8g0336801 34.783 138 86 2 211 345 11 147 1.32e-26 103
Msa0789410 MtrunA17_Chr5g0407781 28.058 278 181 7 52 328 5 264 8.49e-26 105
Msa0789410 MtrunA17_Chr7g0247741 30.877 285 171 12 42 313 1 272 1.40e-25 105
Msa0789410 MtrunA17_Chr8g0348951 28.947 304 192 12 46 336 2 294 2.24e-25 104
Msa0789410 MtrunA17_Chr8g0362741 28.205 273 171 8 6 275 23 273 4.51e-24 100
Msa0789410 MtrunA17_Chr4g0055911 27.541 305 197 11 51 339 8 304 2.04e-23 99.0
Msa0789410 MtrunA17_Chr4g0004071 29.568 301 195 10 51 342 8 300 3.18e-23 98.2
Msa0789410 MtrunA17_Chr4g0037611 43.158 95 52 2 209 302 34 127 1.37e-22 93.6
Msa0789410 MtrunA17_Chr8g0336871 31.928 166 103 3 183 345 7 165 1.43e-22 93.2
Msa0789410 MtrunA17_Chr6g0486831 27.465 284 180 9 75 335 41 321 7.50e-22 95.1
Msa0789410 MtrunA17_Chr4g0004061 28.247 308 203 11 45 342 2 301 9.56e-22 94.4
Msa0789410 MtrunA17_Chr1g0158011 30.556 252 156 11 93 337 5 244 3.38e-21 91.7
Msa0789410 MtrunA17_Chr4g0055871 27.476 313 180 12 52 339 9 299 4.12e-21 92.4
Msa0789410 MtrunA17_Chr2g0319521 34.821 112 72 1 164 275 14 124 3.62e-20 85.5
Msa0789410 MtrunA17_Chr5g0407731 25.794 252 175 6 52 302 33 273 1.22e-19 88.6
Msa0789410 MtrunA17_Chr8g0389941 27.491 291 177 13 75 339 54 336 3.89e-19 87.4
Msa0789410 MtrunA17_Chr7g0256741 28.625 269 165 10 52 305 10 266 5.82e-18 83.6
Msa0789410 MtrunA17_Chr7g0219991 42.157 102 58 1 172 273 254 354 9.69e-18 83.2
Msa0789410 MtrunA17_Chr8g0375621 62.500 56 21 0 187 242 1 56 1.11e-17 76.3
Msa0789410 MtrunA17_Chr8g0364171 35.455 110 70 1 166 275 18 126 2.75e-17 77.8
Msa0789410 MtrunA17_Chr8g0336831 26.556 241 162 6 1 234 11 243 1.39e-15 75.9
Msa0789410 MtrunA17_Chr1g0158021 27.232 224 146 7 51 267 48 261 2.01e-15 75.5
Msa0789410 MtrunA17_Chr1g0161101 38.017 121 63 4 197 315 392 502 6.17e-15 75.9
Msa0789410 MtrunA17_Chr3g0092581 23.370 184 122 5 176 357 1 167 8.23e-15 72.0
Msa0789410 MtrunA17_Chr3g0138351 23.750 320 200 13 51 344 6 307 1.49e-14 73.6
Msa0789410 MtrunA17_Chr1g0158031 32.895 152 95 5 176 323 1 149 3.21e-14 70.1
Msa0789410 MtrunA17_Chr2g0311611 41.667 72 34 2 211 275 1 71 9.41e-14 65.9
Msa0789410 MtrunA17_Chr1g0167921 32.039 103 69 1 172 274 55 156 5.80e-13 66.6
Msa0789410 MtrunA17_Chr8g0375611 49.020 51 26 0 307 357 1 51 1.30e-12 62.4
Msa0789410 MtrunA17_Chr4g0009541 26.380 163 115 5 157 316 115 275 1.46e-12 67.8
Msa0789410 MtrunA17_Chr1g0148781 26.545 275 164 12 52 302 8 268 5.67e-12 65.9
Msa0789410 MtrunA17_Chr4g0075431 25.000 156 106 3 49 202 1 147 9.26e-12 63.2
Msa0789410 MtrunA17_Chr4g0009561 27.215 158 109 5 165 318 126 281 2.17e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0789410 AT1G17020.1 53.868 349 156 4 11 354 10 358 1.58e-138 398
Msa0789410 AT1G17010.1 53.409 352 159 4 11 357 10 361 1.42e-136 393
Msa0789410 AT4G25300.1 53.161 348 159 4 11 354 9 356 1.82e-135 390
Msa0789410 AT4G25310.1 52.874 348 157 4 11 354 9 353 1.83e-132 382
Msa0789410 AT1G78550.1 48.148 351 179 3 7 354 6 356 4.74e-123 358
Msa0789410 AT4G25310.2 46.686 347 152 4 11 354 9 325 4.56e-107 317
Msa0789410 AT1G78550.2 48.905 274 140 0 81 354 5 278 1.42e-102 303
Msa0789410 AT3G21420.1 43.020 351 191 5 15 356 14 364 3.08e-100 301
Msa0789410 AT2G38240.1 37.537 341 206 3 17 352 11 349 3.56e-86 265
Msa0789410 AT3G55970.1 35.735 347 212 5 18 353 14 360 4.39e-81 252
Msa0789410 AT5G05600.1 33.923 339 218 3 18 350 27 365 3.40e-79 247
Msa0789410 AT3G11180.1 35.882 340 210 3 18 350 56 394 3.63e-78 245
Msa0789410 AT3G11180.2 37.037 324 196 3 18 334 56 378 5.57e-78 245
Msa0789410 AT5G20400.1 37.273 330 198 6 17 338 8 336 1.42e-74 234
Msa0789410 AT4G25300.2 54.450 191 86 1 165 354 72 262 2.07e-73 229
Msa0789410 AT1G49390.1 35.802 324 193 7 17 330 8 326 2.35e-70 224
Msa0789410 AT5G54000.2 36.119 335 196 7 17 338 8 337 2.82e-70 223
Msa0789410 AT5G20550.1 36.254 331 202 7 17 339 8 337 3.13e-68 218
Msa0789410 AT5G24530.1 34.848 330 207 4 27 352 13 338 1.93e-66 213
Msa0789410 AT5G05600.2 35.985 264 163 3 18 275 27 290 2.88e-63 204
Msa0789410 AT1G49390.2 36.842 247 155 1 85 330 1 247 3.65e-62 200
Msa0789410 AT5G54000.1 36.965 257 159 2 85 338 1 257 1.04e-61 199
Msa0789410 AT3G55970.2 37.546 269 157 5 18 275 14 282 1.66e-61 199
Msa0789410 AT4G16330.2 34.853 307 185 6 51 352 66 362 1.68e-61 201
Msa0789410 AT4G10490.1 31.714 350 225 7 10 353 3 344 3.12e-61 200
Msa0789410 AT2G36690.2 32.471 348 225 6 17 356 20 365 6.61e-61 200
Msa0789410 AT2G36690.1 32.471 348 225 6 17 356 20 365 6.61e-61 200
Msa0789410 AT4G22880.1 32.523 329 206 6 13 326 2 329 4.57e-58 192
Msa0789410 AT4G22880.2 32.523 329 206 6 13 326 2 329 4.57e-58 192
Msa0789410 AT4G22880.3 32.523 329 206 6 13 326 2 329 4.57e-58 192
Msa0789410 AT4G10500.1 29.888 358 233 7 1 353 1 345 1.34e-57 191
Msa0789410 AT3G60290.1 34.286 350 212 11 17 356 15 356 1.69e-56 188
Msa0789410 AT2G44800.1 33.528 343 218 8 17 353 15 353 7.57e-56 186
Msa0789410 AT1G55290.1 34.012 344 206 10 17 350 25 357 5.12e-55 184
Msa0789410 AT3G13610.1 33.333 351 206 13 17 354 26 361 1.10e-54 183
Msa0789410 AT3G19000.1 33.770 305 176 7 51 335 31 329 3.39e-53 179
Msa0789410 AT3G19010.1 32.121 330 191 7 51 355 27 348 6.91e-53 178
Msa0789410 AT3G19010.4 32.121 330 191 7 51 355 27 348 6.91e-53 178
Msa0789410 AT5G08640.2 31.232 349 215 10 1 343 1 330 1.47e-51 174
Msa0789410 AT5G08640.1 31.232 349 215 10 1 343 1 330 1.47e-51 174
Msa0789410 AT4G16330.1 35.178 253 155 4 104 352 9 256 1.24e-50 170
Msa0789410 AT5G59540.1 30.747 348 224 7 18 354 25 366 1.37e-49 170
Msa0789410 AT1G12010.1 30.921 304 188 7 51 346 6 295 1.87e-49 169
Msa0789410 AT3G51240.1 29.412 323 220 5 27 344 13 332 2.64e-49 169
Msa0789410 AT1G77330.1 36.131 274 153 7 52 314 3 265 3.26e-49 167
Msa0789410 AT1G15550.1 29.503 322 207 9 26 336 27 339 1.77e-48 167
Msa0789410 AT1G62380.1 31.387 274 172 5 51 318 6 269 2.98e-48 166
Msa0789410 AT5G63590.1 35.764 288 169 8 52 328 14 296 3.18e-48 165
Msa0789410 AT5G43450.1 30.523 344 219 8 17 349 23 357 3.40e-48 166
Msa0789410 AT5G07480.1 30.395 329 189 8 52 356 44 356 3.61e-48 166
Msa0789410 AT1G05010.1 30.741 270 176 4 53 318 5 267 6.90e-48 165
Msa0789410 AT1G04380.1 32.573 307 197 5 52 354 45 345 2.92e-47 164
Msa0789410 AT4G25420.1 31.613 310 196 4 52 352 61 363 4.09e-47 164
Msa0789410 AT1G06620.1 31.105 344 209 8 17 345 26 356 8.53e-47 163
Msa0789410 AT1G80340.1 31.104 299 192 5 28 320 26 316 1.46e-46 162
Msa0789410 AT5G59530.1 30.000 350 223 8 18 354 24 364 1.62e-46 162
Msa0789410 AT1G06640.1 29.775 356 221 9 17 354 25 369 7.67e-46 160
Msa0789410 AT2G30830.1 31.361 338 215 8 17 345 20 349 9.38e-46 160
Msa0789410 AT2G19590.1 30.292 274 178 4 51 320 10 274 1.21e-45 158
Msa0789410 AT5G43440.1 30.519 308 205 5 52 354 62 365 1.22e-45 160
Msa0789410 AT3G19010.3 31.731 312 186 8 51 355 27 318 2.39e-45 158
Msa0789410 AT1G04350.1 30.000 350 223 9 17 354 21 360 4.06e-45 158
Msa0789410 AT1G60980.1 32.558 301 181 7 29 313 36 330 7.32e-45 158
Msa0789410 AT5G51810.1 34.050 279 169 6 52 321 63 335 1.81e-44 157
Msa0789410 AT1G06650.2 29.143 350 213 10 17 345 25 360 2.10e-44 157
Msa0789410 AT3G19000.2 33.469 245 137 7 51 275 31 269 1.32e-42 149
Msa0789410 AT5G07200.1 31.511 311 197 7 20 318 28 334 3.07e-42 151
Msa0789410 AT3G12900.1 27.966 354 219 6 17 353 21 355 5.62e-42 150
Msa0789410 AT2G30840.1 28.857 350 230 8 17 354 20 362 7.18e-42 150
Msa0789410 AT1G03400.1 29.532 342 211 9 17 345 19 343 8.75e-42 149
Msa0789410 AT1G78440.1 30.619 307 187 10 52 344 18 312 1.89e-41 148
Msa0789410 AT1G06645.1 28.406 345 219 10 17 345 38 370 1.23e-40 147
Msa0789410 AT1G80330.1 30.068 296 189 9 51 336 48 335 1.64e-40 146
Msa0789410 AT1G03410.2 30.464 302 193 7 52 343 57 351 4.03e-40 145
Msa0789410 AT3G19010.2 32.932 249 138 6 51 278 27 267 6.37e-40 143
Msa0789410 AT1G03410.1 30.464 302 193 7 52 343 94 388 6.66e-40 145
Msa0789410 AT5G63600.1 32.180 289 186 7 48 334 29 309 7.35e-40 144
Msa0789410 AT4G21200.1 32.028 281 170 7 40 311 28 296 7.90e-40 144
Msa0789410 AT3G61400.1 29.885 348 212 12 17 343 24 360 8.97e-40 144
Msa0789410 AT5G63600.2 32.069 290 186 8 48 334 29 310 6.55e-39 141
Msa0789410 AT1G44090.1 31.071 280 175 6 52 318 63 337 1.11e-38 142
Msa0789410 AT3G51240.2 30.522 249 167 4 99 344 3 248 2.35e-38 138
Msa0789410 AT2G30840.3 28.000 350 227 9 17 354 20 356 1.38e-37 138
Msa0789410 AT2G34555.1 32.180 289 174 9 52 330 27 303 2.33e-37 137
Msa0789410 AT1G30040.1 27.410 332 219 9 21 343 3 321 4.06e-37 137
Msa0789410 AT4G21690.1 28.182 330 208 9 29 343 29 344 6.20e-37 136
Msa0789410 AT3G49620.1 32.203 295 175 8 42 314 26 317 1.33e-36 135
Msa0789410 AT3G50210.4 31.488 289 172 7 52 314 8 296 4.79e-36 134
Msa0789410 AT3G50210.1 31.488 289 172 7 52 314 8 296 4.79e-36 134
Msa0789410 AT3G50210.3 31.488 289 172 7 52 314 8 296 4.79e-36 134
Msa0789410 AT5G07480.2 32.057 209 132 4 156 356 41 247 5.21e-36 131
Msa0789410 AT1G03400.2 27.297 370 211 10 17 345 19 371 5.80e-36 134
Msa0789410 AT4G25420.2 32.189 233 148 3 52 275 61 292 1.10e-35 132
Msa0789410 AT2G25450.1 28.035 346 235 7 17 354 20 359 1.38e-35 133
Msa0789410 AT1G02400.1 29.755 326 206 12 34 344 2 319 4.78e-35 131
Msa0789410 AT2G19590.2 27.881 269 175 5 82 346 26 279 1.08e-34 129
Msa0789410 AT5G51810.2 33.051 236 144 5 52 278 63 293 1.32e-34 129
Msa0789410 AT5G63595.1 32.463 268 151 8 36 298 7 249 1.41e-34 128
Msa0789410 AT1G06640.2 32.721 272 158 7 17 274 25 285 1.64e-34 129
Msa0789410 AT5G12270.1 27.811 338 227 7 26 354 30 359 1.93e-34 130
Msa0789410 AT1G06640.3 32.234 273 160 7 17 275 25 286 2.09e-34 128
Msa0789410 AT1G06650.1 30.605 281 164 8 17 280 25 291 4.12e-33 125
Msa0789410 AT5G43935.1 28.966 290 175 9 51 334 18 282 8.15e-33 124
Msa0789410 AT1G47990.1 27.564 312 190 11 52 344 15 309 1.16e-32 124
Msa0789410 AT1G50960.1 31.538 260 160 7 51 302 39 288 1.22e-32 125
Msa0789410 AT1G06620.2 31.481 270 160 7 17 274 26 282 5.14e-32 122
Msa0789410 AT5G59540.2 31.461 267 169 6 17 275 24 284 6.80e-32 121
Msa0789410 AT3G49630.1 30.435 299 175 11 42 314 1 292 1.25e-31 122
Msa0789410 AT5G43450.2 30.827 266 167 7 17 274 23 279 1.27e-30 118
Msa0789410 AT3G49630.3 30.515 272 166 9 61 314 22 288 1.94e-30 119
Msa0789410 AT1G04380.2 33.040 227 145 4 52 277 45 265 3.23e-29 114
Msa0789410 AT5G63580.2 32.751 229 138 8 52 273 19 238 9.94e-29 112
Msa0789410 AT5G63580.1 33.040 227 140 7 52 273 19 238 1.58e-28 111
Msa0789410 AT2G30840.2 28.464 267 175 6 17 274 20 279 6.22e-28 111
Msa0789410 AT5G43440.2 31.111 225 149 4 52 274 62 282 7.39e-28 110
Msa0789410 AT3G61400.2 30.435 276 164 10 17 275 24 288 2.98e-27 109
Msa0789410 AT3G47190.1 26.667 270 163 8 52 302 32 285 4.27e-26 107
Msa0789410 AT3G46500.5 28.947 304 185 14 44 325 9 303 1.12e-24 102
Msa0789410 AT1G30040.2 28.030 264 168 9 21 275 3 253 2.60e-24 100
Msa0789410 AT4G23340.1 30.037 273 164 10 43 302 1 259 3.51e-22 95.9
Msa0789410 AT3G50210.2 32.804 189 115 4 138 314 26 214 4.38e-22 94.4
Msa0789410 AT3G46500.7 28.364 275 170 13 44 300 9 274 8.39e-22 94.4
Msa0789410 AT5G51310.1 27.036 307 191 13 51 336 4 298 2.93e-21 93.6
Msa0789410 AT1G02400.2 29.921 254 152 12 40 277 8 251 9.03e-21 90.9
Msa0789410 AT5G58660.1 25.874 286 160 10 52 302 34 302 9.93e-21 92.4
Msa0789410 AT3G49630.2 33.136 169 102 5 152 314 56 219 2.29e-20 89.7
Msa0789410 AT1G14130.1 28.070 285 189 7 52 332 9 281 2.58e-20 90.5
Msa0789410 AT3G46490.2 28.571 308 172 15 46 318 3 297 4.84e-19 87.0
Msa0789410 AT1G35190.1 28.014 282 164 11 75 325 32 305 8.36e-18 83.6
Msa0789410 AT1G52820.1 26.948 308 205 13 44 340 3 301 9.05e-18 83.6
Msa0789410 AT1G35190.2 27.500 280 145 12 75 325 32 282 7.88e-17 80.5
Msa0789410 AT3G46500.10 31.667 180 107 7 159 325 53 229 1.01e-16 79.3
Msa0789410 AT3G46500.1 31.667 180 107 7 159 325 53 229 1.01e-16 79.3
Msa0789410 AT1G14120.2 25.974 308 192 6 52 345 8 293 1.21e-16 80.1
Msa0789410 AT1G14120.1 25.974 308 192 6 52 345 8 293 1.21e-16 80.1
Msa0789410 AT1G14120.3 25.974 308 192 6 52 345 8 293 1.21e-16 80.1
Msa0789410 AT3G46500.4 32.941 170 98 7 169 325 1 167 4.34e-16 76.3
Msa0789410 AT4G22870.1 35.849 106 59 2 244 348 2 99 4.52e-16 73.9
Msa0789410 AT4G23340.2 39.583 96 53 3 211 302 47 141 1.65e-14 72.0
Msa0789410 AT2G06960.1 32.432 148 85 5 195 342 14 146 2.28e-14 70.1
Msa0789410 AT4G22870.2 40.230 87 48 2 244 326 40 126 3.17e-14 70.1
Msa0789410 AT3G46500.3 31.788 151 91 6 159 300 53 200 4.97e-14 71.2
Msa0789410 AT4G16765.6 28.218 202 124 7 153 339 45 240 1.65e-13 70.1
Msa0789410 AT4G16765.1 28.218 202 124 7 153 339 45 240 1.65e-13 70.1
Msa0789410 AT4G16765.2 28.218 202 124 7 153 339 45 240 1.65e-13 70.1
Msa0789410 AT3G46500.6 31.250 160 95 7 153 300 13 169 1.90e-13 68.9
Msa0789410 AT3G46500.8 31.250 160 95 7 153 300 13 169 1.90e-13 68.9
Msa0789410 AT1G52800.1 24.579 297 203 12 51 335 9 296 4.99e-13 69.3
Msa0789410 AT4G16765.3 30.303 165 94 7 153 302 45 203 4.36e-12 65.9
Msa0789410 AT3G46480.1 30.058 173 107 6 165 325 93 263 1.86e-11 64.7
Msa0789410 AT4G03070.1 25.862 174 122 3 167 334 128 300 2.05e-11 64.7
Msa0789410 AT3G46500.2 31.579 133 80 5 159 282 53 183 2.91e-11 62.4
Msa0789410 AT1G52820.2 28.395 243 154 13 44 275 3 236 7.31e-11 62.4

Find 73 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGAATGGGGTTTCTTTC+AGG 0.083963 5_2:+77715845 Msa0789410:CDS
TCACGGAGTCAATCCTTTAT+TGG 0.222974 5_2:+77716753 Msa0789410:CDS
GCATTTGTTAGAGGCTTAAT+AGG 0.242773 5_2:-77717366 None:intergenic
ATTCTAGCAATTCATTGTTT+TGG 0.253002 5_2:-77717176 None:intergenic
CTAGTATTCCCCAACAATTC+AGG 0.279797 5_2:+77716971 Msa0789410:CDS
GGAATACTAGGAAATAAGTT+TGG 0.339541 5_2:-77716958 None:intergenic
ATCTCAGAAACCAGGTGATA+TGG 0.344452 5_2:+77716840 Msa0789410:CDS
CTGAATTGTTGGGGAATACT+AGG 0.351495 5_2:-77716970 None:intergenic
CCAGGTGATATGGAAGGTTT+TGG 0.352253 5_2:+77716850 Msa0789410:CDS
ATAACAAAAGCATTTGTTAG+AGG 0.355038 5_2:-77717375 None:intergenic
AACATATCGTTCTGGAACTT+TGG 0.375956 5_2:-77715697 None:intergenic
TCTCTTGGTGCCTTCTGTCC+AGG 0.394890 5_2:+77715653 Msa0789410:CDS
CTCCAACTCAATGAAATAGA+AGG 0.399689 5_2:+77717312 Msa0789410:CDS
AGTAATTCATCCTCATTGAT+TGG 0.400642 5_2:-77717215 None:intergenic
GGTATCAGAGGATCACAAAT+TGG 0.402340 5_2:+77716885 Msa0789410:CDS
GGCCTTCTATTTCATTGAGT+TGG 0.410796 5_2:-77717314 None:intergenic
TGCAGCAATGGATTCAGAAA+TGG 0.417088 5_2:+77715611 None:intergenic
TGATCATGCCTGCAGAGAAT+GGG 0.418939 5_2:+77715833 Msa0789410:CDS
TTGATCATGCCTGCAGAGAA+TGG 0.426303 5_2:+77715832 Msa0789410:CDS
TTGAGTCCAATGACTTTGTC+TGG 0.427085 5_2:-77717255 None:intergenic
GGGAAAGAACCTGAATTGTT+GGG 0.431712 5_2:-77716980 None:intergenic
TTCATTGAGTTGGAGAAGAA+TGG 0.432192 5_2:-77717304 None:intergenic
TGGGTTGCTTTACTATCTCC+TGG 0.435852 5_2:-77715671 None:intergenic
AGGGAAAGAACCTGAATTGT+TGG 0.436427 5_2:-77716981 None:intergenic
GGAGTAATAAGGCTTGGTAC+TGG 0.450966 5_2:-77717871 None:intergenic
TATTTCTCACGCCAGCTTGA+AGG 0.471903 5_2:+77717946 Msa0789410:CDS
TCGTTCTGGAACTTTGGTGA+TGG 0.474377 5_2:-77715691 None:intergenic
CCTCAACCAGACAAAGTCAT+TGG 0.479363 5_2:+77717249 Msa0789410:CDS
CTAATGTCGTTGAACACTGC+AGG 0.481272 5_2:-77717901 None:intergenic
TAGATACAACTAGAGGGTCT+TGG 0.489914 5_2:-77715728 None:intergenic
CCAATGACTTTGTCTGGTTG+AGG 0.496976 5_2:-77717249 None:intergenic
TCAGAAATGGTAAAGAAGCT+TGG 0.500619 5_2:+77715624 Msa0789410:CDS
TTTGGATTTCTCATGTATGA+TGG 0.500988 5_2:-77716940 None:intergenic
ACTTTGTCTGGTTGAGGACA+AGG 0.502854 5_2:-77717243 None:intergenic
AGTGTGGAAGATTTCTTCAA+AGG 0.508864 5_2:+77717922 Msa0789410:CDS
AAAGAAACCCCATTCTCTGC+AGG 0.510694 5_2:-77715841 None:intergenic
GAAGCTTGGAAGCTCTCTCT+TGG 0.514547 5_2:+77715638 Msa0789410:CDS
CGTTCTGGAACTTTGGTGAT+GGG 0.517955 5_2:-77715690 None:intergenic
AGAGGATCACAAATTGGAAT+GGG 0.518486 5_2:+77716891 Msa0789410:CDS
CCAAAACCTTCCATATCACC+TGG 0.521789 5_2:-77716850 None:intergenic
CAGAGGATCACAAATTGGAA+TGG 0.527609 5_2:+77716890 Msa0789410:CDS
AACTTATTCAAATCGATGAC+TGG 0.529324 5_2:-77715774 None:intergenic
TGAGTTGGAGAAGAATGGTA+AGG 0.545815 5_2:-77717299 None:intergenic
CGGAGTCAATCCTTTATTGG+TGG 0.547582 5_2:+77716756 Msa0789410:CDS
TTTACTATCTCCTGGACAGA+AGG 0.556430 5_2:-77715663 None:intergenic
GGACTCAATCCTCATTCTGA+TGG 0.574193 5_2:+77717270 Msa0789410:CDS
CTAGAATTATTTGAAGAGGT+AGG 0.576333 5_2:+77717192 Msa0789410:CDS
ATTGCTAGAATTATTTGAAG+AGG 0.576668 5_2:+77717188 Msa0789410:CDS
TAATGTCGTTGAACACTGCA+GGG 0.582551 5_2:-77717900 None:intergenic
CAATCTAGCACTGTGAAATG+TGG 0.587201 5_2:-77717833 None:intergenic
TATTGGCAGCTGATTAATCA+CGG 0.589335 5_2:+77716736 Msa0789410:intron
CGATTAACTCAGAGAAGGAG+AGG 0.590103 5_2:+77717800 Msa0789410:CDS
GATCATGCCTGCAGAGAATG+GGG 0.590145 5_2:+77715834 Msa0789410:CDS
TCAACTGTTTGTGGTATCAG+AGG 0.600452 5_2:+77716873 Msa0789410:CDS
CAGAAACCAGGTGATATGGA+AGG 0.617232 5_2:+77716844 Msa0789410:CDS
AAATCGATGACTGGAACTTG+TGG 0.617267 5_2:-77715765 None:intergenic
TTTGTGCTAGATACAACTAG+AGG 0.618176 5_2:-77715735 None:intergenic
GAGTTGGAGAAGAATGGTAA+GGG 0.618943 5_2:-77717298 None:intergenic
AAGTTGTTGTCAGAAGAAGA+TGG 0.623206 5_2:+77715792 Msa0789410:CDS
AGCACTGTGAAATGTGGCAA+TGG 0.625118 5_2:-77717827 None:intergenic
GTTTGACAGATAATGACGAA+TGG 0.632619 5_2:+77717748 Msa0789410:intron
GGAAAGAACCTGAATTGTTG+GGG 0.633271 5_2:-77716979 None:intergenic
TTGTGCTAGATACAACTAGA+GGG 0.634845 5_2:-77715734 None:intergenic
AGACTTCTTCAATCTACCAG+TGG 0.636943 5_2:+77716801 Msa0789410:CDS
AGCAACGATTAACTCAGAGA+AGG 0.647001 5_2:+77717795 Msa0789410:CDS
AGGGCAGTACCATCAGAATG+AGG 0.647525 5_2:-77717279 None:intergenic
AAATGTACATTGATGACATG+AGG 0.655321 5_2:+77717971 Msa0789410:CDS
AAAATATTATCTCAGAAACC+AGG 0.664490 5_2:+77716832 Msa0789410:CDS
AAGAGGTAGGCCAATCAATG+AGG 0.665167 5_2:+77717205 Msa0789410:CDS
CAACATTGGAGACATGCTAG+AGG 0.685085 5_2:+77717398 Msa0789410:CDS
AATGTCGTTGAACACTGCAG+GGG 0.691919 5_2:-77717899 None:intergenic
TTGTCTGGTTGAGGACAAGG+AGG 0.705398 5_2:-77717240 None:intergenic
AGTGTTCAACGACATTAGTG+TGG 0.716232 5_2:+77717906 Msa0789410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG - chr5_2:77715885-77715904 None:intergenic 0.0%
!! AAAAAAAAAAAAAAAAAAAA+AGG - chr5_2:77715885-77715904 None:intergenic 0.0%
!! AAAAAAAAAAAAAAAGGAGA+CGG - chr5_2:77715880-77715899 None:intergenic 15.0%
!! ATTTAGAAAATAGCAAAATA+AGG + chr5_2:77715996-77716015 Msa0789410:intron 15.0%
!!! TGATATTTCTAATTATTAGT+GGG - chr5_2:77716044-77716063 None:intergenic 15.0%
!!! ATGATATTTCTAATTATTAG+TGG - chr5_2:77716045-77716064 None:intergenic 15.0%
!! TAGAAATATATGTTAATAAG+TGG + chr5_2:77716070-77716089 Msa0789410:intron 15.0%
!!! ATTAATGATCGAAATTTTTT+AGG + chr5_2:77716123-77716142 Msa0789410:intron 15.0%
!!! TTAATGATCGAAATTTTTTA+GGG + chr5_2:77716124-77716143 Msa0789410:intron 15.0%
!!! TCATACTTCATTATTTTAAA+AGG - chr5_2:77716163-77716182 None:intergenic 15.0%
!!! AGTTCATGAAATATATATTT+TGG + chr5_2:77716203-77716222 Msa0789410:intron 15.0%
!!! TTTTAGTTGTATCATATTTA+TGG + chr5_2:77716226-77716245 Msa0789410:intron 15.0%
!! AAAATAATCCATAAATATCT+CGG - chr5_2:77716315-77716334 None:intergenic 15.0%
!!! ATTGATATAGACTTATTTTT+TGG + chr5_2:77716613-77716632 Msa0789410:intron 15.0%
!!! ATTATGGTTTTATTGTAATT+TGG + chr5_2:77716672-77716691 Msa0789410:intron 15.0%
!!! TTATGGTTTTATTGTAATTT+GGG + chr5_2:77716673-77716692 Msa0789410:intron 15.0%
!! GTTTCATTTAAATTTATTGT+TGG - chr5_2:77717574-77717593 None:intergenic 15.0%
!! AAAAAAAAAAAAAAAGGAGA+CGG - chr5_2:77715880-77715899 None:intergenic 15.0%
!! ATTTAGAAAATAGCAAAATA+AGG + chr5_2:77715996-77716015 Msa0789410:intron 15.0%
!!! TGATATTTCTAATTATTAGT+GGG - chr5_2:77716044-77716063 None:intergenic 15.0%
!!! ATGATATTTCTAATTATTAG+TGG - chr5_2:77716045-77716064 None:intergenic 15.0%
!! TAGAAATATATGTTAATAAG+TGG + chr5_2:77716070-77716089 Msa0789410:intron 15.0%
!!! ATTAATGATCGAAATTTTTT+AGG + chr5_2:77716123-77716142 Msa0789410:intron 15.0%
!!! TTAATGATCGAAATTTTTTA+GGG + chr5_2:77716124-77716143 Msa0789410:intron 15.0%
!!! TCATACTTCATTATTTTAAA+AGG - chr5_2:77716163-77716182 None:intergenic 15.0%
!!! AGTTCATGAAATATATATTT+TGG + chr5_2:77716203-77716222 Msa0789410:intron 15.0%
!!! TTTTAGTTGTATCATATTTA+TGG + chr5_2:77716226-77716245 Msa0789410:intron 15.0%
!! AAAATAATCCATAAATATCT+CGG - chr5_2:77716315-77716334 None:intergenic 15.0%
!!! ATTGATATAGACTTATTTTT+TGG + chr5_2:77716613-77716632 Msa0789410:intron 15.0%
!!! ATTATGGTTTTATTGTAATT+TGG + chr5_2:77716672-77716691 Msa0789410:intron 15.0%
!!! TTATGGTTTTATTGTAATTT+GGG + chr5_2:77716673-77716692 Msa0789410:intron 15.0%
!! GTTTCATTTAAATTTATTGT+TGG - chr5_2:77717574-77717593 None:intergenic 15.0%
!!! TTTTCACTTATTCAAAAGAA+CGG + chr5_2:77715911-77715930 Msa0789410:intron 20.0%
!! TTTATAACCAAAATTTATCG+AGG + chr5_2:77716255-77716274 Msa0789410:intron 20.0%
!!! CCGTTCTAAAATTTATATTT+CGG - chr5_2:77716396-77716415 None:intergenic 20.0%
!!! CCGAAATATAAATTTTAGAA+CGG + chr5_2:77716393-77716412 Msa0789410:intron 20.0%
!!! AATTTGTTCTACTTTGTAAA+CGG + chr5_2:77716450-77716469 Msa0789410:intron 20.0%
!! AAAATCATGGTTTATGTTAT+GGG - chr5_2:77716711-77716730 None:intergenic 20.0%
!!! AACCATGATTTTGAAATTAT+TGG + chr5_2:77716719-77716738 Msa0789410:intron 20.0%
!!! TTAAAATTTTCCACCAATAA+AGG - chr5_2:77716769-77716788 None:intergenic 20.0%
!!! TTCCATCTTTTTTTATTTGA+AGG - chr5_2:77717338-77717357 None:intergenic 20.0%
!! AAATAAAAAAAGATGGAATG+TGG + chr5_2:77717340-77717359 Msa0789410:CDS 20.0%
!! TATAAAACTTTCTATTGGAA+CGG - chr5_2:77717459-77717478 None:intergenic 20.0%
!! GACAATATAAAACTTTCTAT+TGG - chr5_2:77717464-77717483 None:intergenic 20.0%
!! TTACTAAATGTAACATGAAA+AGG - chr5_2:77717623-77717642 None:intergenic 20.0%
!!! TTTTCACTTATTCAAAAGAA+CGG + chr5_2:77715911-77715930 Msa0789410:intron 20.0%
!! TTTATAACCAAAATTTATCG+AGG + chr5_2:77716255-77716274 Msa0789410:intron 20.0%
!!! CCGTTCTAAAATTTATATTT+CGG - chr5_2:77716396-77716415 None:intergenic 20.0%
!!! CCGAAATATAAATTTTAGAA+CGG + chr5_2:77716393-77716412 Msa0789410:intron 20.0%
!!! AATTTGTTCTACTTTGTAAA+CGG + chr5_2:77716450-77716469 Msa0789410:intron 20.0%
!! AAAATCATGGTTTATGTTAT+GGG - chr5_2:77716711-77716730 None:intergenic 20.0%
!!! AACCATGATTTTGAAATTAT+TGG + chr5_2:77716719-77716738 Msa0789410:intron 20.0%
!!! TTAAAATTTTCCACCAATAA+AGG - chr5_2:77716769-77716788 None:intergenic 20.0%
!!! TTCCATCTTTTTTTATTTGA+AGG - chr5_2:77717338-77717357 None:intergenic 20.0%
!! AAATAAAAAAAGATGGAATG+TGG + chr5_2:77717340-77717359 Msa0789410:CDS 20.0%
!! TATAAAACTTTCTATTGGAA+CGG - chr5_2:77717459-77717478 None:intergenic 20.0%
!! GACAATATAAAACTTTCTAT+TGG - chr5_2:77717464-77717483 None:intergenic 20.0%
!! TTACTAAATGTAACATGAAA+AGG - chr5_2:77717623-77717642 None:intergenic 20.0%
!!! AATGGTTTTGAAAGAAAGAT+TGG + chr5_2:77715966-77715985 Msa0789410:intron 25.0%
! TCTCAATGGTTACATAATTA+TGG + chr5_2:77716656-77716675 Msa0789410:intron 25.0%
! CAAAATCATGGTTTATGTTA+TGG - chr5_2:77716712-77716731 None:intergenic 25.0%
! TGCCAATAATTTCAAAATCA+TGG - chr5_2:77716724-77716743 None:intergenic 25.0%
! AAAATATTATCTCAGAAACC+AGG + chr5_2:77716832-77716851 Msa0789410:CDS 25.0%
! ATCAGACATATACAAATAGA+AGG - chr5_2:77717007-77717026 None:intergenic 25.0%
!! ATTCTAGCAATTCATTGTTT+TGG - chr5_2:77717179-77717198 None:intergenic 25.0%
! ATTGCTAGAATTATTTGAAG+AGG + chr5_2:77717188-77717207 Msa0789410:CDS 25.0%
!!! ATAACAAAAGCATTTGTTAG+AGG - chr5_2:77717378-77717397 None:intergenic 25.0%
!!! AATGCTTTTGTTATCAACAT+TGG + chr5_2:77717384-77717403 Msa0789410:CDS 25.0%
!!! AATGGTTTTGAAAGAAAGAT+TGG + chr5_2:77715966-77715985 Msa0789410:intron 25.0%
! TCTCAATGGTTACATAATTA+TGG + chr5_2:77716656-77716675 Msa0789410:intron 25.0%
! CAAAATCATGGTTTATGTTA+TGG - chr5_2:77716712-77716731 None:intergenic 25.0%
! TGCCAATAATTTCAAAATCA+TGG - chr5_2:77716724-77716743 None:intergenic 25.0%
! AAAATATTATCTCAGAAACC+AGG + chr5_2:77716832-77716851 Msa0789410:CDS 25.0%
! ATCAGACATATACAAATAGA+AGG - chr5_2:77717007-77717026 None:intergenic 25.0%
!! ATTCTAGCAATTCATTGTTT+TGG - chr5_2:77717179-77717198 None:intergenic 25.0%
! ATTGCTAGAATTATTTGAAG+AGG + chr5_2:77717188-77717207 Msa0789410:CDS 25.0%
!!! ATAACAAAAGCATTTGTTAG+AGG - chr5_2:77717378-77717397 None:intergenic 25.0%
!!! AATGCTTTTGTTATCAACAT+TGG + chr5_2:77717384-77717403 Msa0789410:CDS 25.0%
AACTTATTCAAATCGATGAC+TGG - chr5_2:77715777-77715796 None:intergenic 30.0%
AAGGACATTGTCTAAAAGAA+TGG + chr5_2:77715948-77715967 Msa0789410:intron 30.0%
AAGCTAAACATTCAAAGACT+TGG + chr5_2:77716340-77716359 Msa0789410:intron 30.0%
ATTTACAACAGTAGAAAGAG+AGG + chr5_2:77716420-77716439 Msa0789410:intron 30.0%
GTTTGAGTCATACTTCATAA+GGG + chr5_2:77716472-77716491 Msa0789410:intron 30.0%
TTATAAATACCCATCGCTTT+CGG + chr5_2:77716546-77716565 Msa0789410:intron 30.0%
AGAGACTTATGTAATCTCAA+TGG + chr5_2:77716642-77716661 Msa0789410:intron 30.0%
! AATATTTTCTTCTCTTCCAC+TGG - chr5_2:77716820-77716839 None:intergenic 30.0%
TTTGGATTTCTCATGTATGA+TGG - chr5_2:77716943-77716962 None:intergenic 30.0%
GGAATACTAGGAAATAAGTT+TGG - chr5_2:77716961-77716980 None:intergenic 30.0%
GACATATACAAATAGAAGGA+GGG - chr5_2:77717003-77717022 None:intergenic 30.0%
AGACATATACAAATAGAAGG+AGG - chr5_2:77717004-77717023 None:intergenic 30.0%
CTAGAATTATTTGAAGAGGT+AGG + chr5_2:77717192-77717211 Msa0789410:CDS 30.0%
AGTAATTCATCCTCATTGAT+TGG - chr5_2:77717218-77717237 None:intergenic 30.0%
GGCCTTCAAATAAAAAAAGA+TGG + chr5_2:77717333-77717352 Msa0789410:CDS 30.0%
ACATTGTCAATCAATCGTAA+TGG - chr5_2:77717536-77717555 None:intergenic 30.0%
!!! TTCTGATTTGTTTTTCTCGA+AGG - chr5_2:77717684-77717703 None:intergenic 30.0%
! AAATGTACATTGATGACATG+AGG + chr5_2:77717971-77717990 Msa0789410:CDS 30.0%
AACTTATTCAAATCGATGAC+TGG - chr5_2:77715777-77715796 None:intergenic 30.0%
AAGGACATTGTCTAAAAGAA+TGG + chr5_2:77715948-77715967 Msa0789410:intron 30.0%
AAGCTAAACATTCAAAGACT+TGG + chr5_2:77716340-77716359 Msa0789410:intron 30.0%
ATTTACAACAGTAGAAAGAG+AGG + chr5_2:77716420-77716439 Msa0789410:intron 30.0%
GTTTGAGTCATACTTCATAA+GGG + chr5_2:77716472-77716491 Msa0789410:intron 30.0%
TTATAAATACCCATCGCTTT+CGG + chr5_2:77716546-77716565 Msa0789410:intron 30.0%
AGAGACTTATGTAATCTCAA+TGG + chr5_2:77716642-77716661 Msa0789410:intron 30.0%
! AATATTTTCTTCTCTTCCAC+TGG - chr5_2:77716820-77716839 None:intergenic 30.0%
TTTGGATTTCTCATGTATGA+TGG - chr5_2:77716943-77716962 None:intergenic 30.0%
GGAATACTAGGAAATAAGTT+TGG - chr5_2:77716961-77716980 None:intergenic 30.0%
GACATATACAAATAGAAGGA+GGG - chr5_2:77717003-77717022 None:intergenic 30.0%
AGACATATACAAATAGAAGG+AGG - chr5_2:77717004-77717023 None:intergenic 30.0%
CTAGAATTATTTGAAGAGGT+AGG + chr5_2:77717192-77717211 Msa0789410:CDS 30.0%
AGTAATTCATCCTCATTGAT+TGG - chr5_2:77717218-77717237 None:intergenic 30.0%
GGCCTTCAAATAAAAAAAGA+TGG + chr5_2:77717333-77717352 Msa0789410:CDS 30.0%
ACATTGTCAATCAATCGTAA+TGG - chr5_2:77717536-77717555 None:intergenic 30.0%
!!! TTCTGATTTGTTTTTCTCGA+AGG - chr5_2:77717684-77717703 None:intergenic 30.0%
! AAATGTACATTGATGACATG+AGG + chr5_2:77717971-77717990 Msa0789410:CDS 30.0%
TCAGAAATGGTAAAGAAGCT+TGG + chr5_2:77715624-77715643 Msa0789410:CDS 35.0%
!! AACATATCGTTCTGGAACTT+TGG - chr5_2:77715700-77715719 None:intergenic 35.0%
! TTTTGCTGAACATATCGTTC+TGG - chr5_2:77715708-77715727 None:intergenic 35.0%
TTGTGCTAGATACAACTAGA+GGG - chr5_2:77715737-77715756 None:intergenic 35.0%
TTTGTGCTAGATACAACTAG+AGG - chr5_2:77715738-77715757 None:intergenic 35.0%
AAGTTGTTGTCAGAAGAAGA+TGG + chr5_2:77715792-77715811 Msa0789410:CDS 35.0%
AATACGCTCCGAGATATTTA+TGG + chr5_2:77716304-77716323 Msa0789410:intron 35.0%
GGTTTGAGTCATACTTCATA+AGG + chr5_2:77716471-77716490 Msa0789410:intron 35.0%
TTTGATATTCCGAAAGCGAT+GGG - chr5_2:77716558-77716577 None:intergenic 35.0%
! TTTTGATATTCCGAAAGCGA+TGG - chr5_2:77716559-77716578 None:intergenic 35.0%
TATTGGCAGCTGATTAATCA+CGG + chr5_2:77716736-77716755 Msa0789410:intron 35.0%
AGAGGATCACAAATTGGAAT+GGG + chr5_2:77716891-77716910 Msa0789410:CDS 35.0%
!! TTCATTGAGTTGGAGAAGAA+TGG - chr5_2:77717307-77717326 None:intergenic 35.0%
CTCCAACTCAATGAAATAGA+AGG + chr5_2:77717312-77717331 Msa0789410:CDS 35.0%
! GCATTTGTTAGAGGCTTAAT+AGG - chr5_2:77717369-77717388 None:intergenic 35.0%
! ACTTTTCTCACCACTTCTAA+CGG - chr5_2:77717492-77717511 None:intergenic 35.0%
GTTTGACAGATAATGACGAA+TGG + chr5_2:77717748-77717767 Msa0789410:intron 35.0%
!!! GTTTTAGGAGTAATAAGGCT+TGG - chr5_2:77717880-77717899 None:intergenic 35.0%
AGTGTGGAAGATTTCTTCAA+AGG + chr5_2:77717922-77717941 Msa0789410:CDS 35.0%
! TGTACATTTTTCCTTCAAGC+TGG - chr5_2:77717960-77717979 None:intergenic 35.0%
TCAGAAATGGTAAAGAAGCT+TGG + chr5_2:77715624-77715643 Msa0789410:CDS 35.0%
!! AACATATCGTTCTGGAACTT+TGG - chr5_2:77715700-77715719 None:intergenic 35.0%
! TTTTGCTGAACATATCGTTC+TGG - chr5_2:77715708-77715727 None:intergenic 35.0%
TTGTGCTAGATACAACTAGA+GGG - chr5_2:77715737-77715756 None:intergenic 35.0%
TTTGTGCTAGATACAACTAG+AGG - chr5_2:77715738-77715757 None:intergenic 35.0%
AAGTTGTTGTCAGAAGAAGA+TGG + chr5_2:77715792-77715811 Msa0789410:CDS 35.0%
AATACGCTCCGAGATATTTA+TGG + chr5_2:77716304-77716323 Msa0789410:intron 35.0%
GGTTTGAGTCATACTTCATA+AGG + chr5_2:77716471-77716490 Msa0789410:intron 35.0%
TTTGATATTCCGAAAGCGAT+GGG - chr5_2:77716558-77716577 None:intergenic 35.0%
! TTTTGATATTCCGAAAGCGA+TGG - chr5_2:77716559-77716578 None:intergenic 35.0%
TATTGGCAGCTGATTAATCA+CGG + chr5_2:77716736-77716755 Msa0789410:intron 35.0%
AGAGGATCACAAATTGGAAT+GGG + chr5_2:77716891-77716910 Msa0789410:CDS 35.0%
!! TTCATTGAGTTGGAGAAGAA+TGG - chr5_2:77717307-77717326 None:intergenic 35.0%
CTCCAACTCAATGAAATAGA+AGG + chr5_2:77717312-77717331 Msa0789410:CDS 35.0%
! GCATTTGTTAGAGGCTTAAT+AGG - chr5_2:77717369-77717388 None:intergenic 35.0%
! ACTTTTCTCACCACTTCTAA+CGG - chr5_2:77717492-77717511 None:intergenic 35.0%
GTTTGACAGATAATGACGAA+TGG + chr5_2:77717748-77717767 Msa0789410:intron 35.0%
!!! GTTTTAGGAGTAATAAGGCT+TGG - chr5_2:77717880-77717899 None:intergenic 35.0%
AGTGTGGAAGATTTCTTCAA+AGG + chr5_2:77717922-77717941 Msa0789410:CDS 35.0%
! TGTACATTTTTCCTTCAAGC+TGG - chr5_2:77717960-77717979 None:intergenic 35.0%
TTTACTATCTCCTGGACAGA+AGG - chr5_2:77715666-77715685 None:intergenic 40.0%
TAGATACAACTAGAGGGTCT+TGG - chr5_2:77715731-77715750 None:intergenic 40.0%
AAATCGATGACTGGAACTTG+TGG - chr5_2:77715768-77715787 None:intergenic 40.0%
AACGGTTGTGTGTTTGACAA+AGG + chr5_2:77715929-77715948 Msa0789410:intron 40.0%
! TGCTCGTCCTCGATAAATTT+TGG - chr5_2:77716265-77716284 None:intergenic 40.0%
TCACGGAGTCAATCCTTTAT+TGG + chr5_2:77716753-77716772 Msa0789410:CDS 40.0%
AGACTTCTTCAATCTACCAG+TGG + chr5_2:77716801-77716820 Msa0789410:CDS 40.0%
ATCTCAGAAACCAGGTGATA+TGG + chr5_2:77716840-77716859 Msa0789410:CDS 40.0%
!! AGGTTTTGGTCAACTGTTTG+TGG + chr5_2:77716864-77716883 Msa0789410:CDS 40.0%
TCAACTGTTTGTGGTATCAG+AGG + chr5_2:77716873-77716892 Msa0789410:CDS 40.0%
GGTATCAGAGGATCACAAAT+TGG + chr5_2:77716885-77716904 Msa0789410:CDS 40.0%
CAGAGGATCACAAATTGGAA+TGG + chr5_2:77716890-77716909 Msa0789410:CDS 40.0%
CTGAATTGTTGGGGAATACT+AGG - chr5_2:77716973-77716992 None:intergenic 40.0%
CTAGTATTCCCCAACAATTC+AGG + chr5_2:77716971-77716990 Msa0789410:CDS 40.0%
GGAAAGAACCTGAATTGTTG+GGG - chr5_2:77716982-77717001 None:intergenic 40.0%
GGGAAAGAACCTGAATTGTT+GGG - chr5_2:77716983-77717002 None:intergenic 40.0%
AGGGAAAGAACCTGAATTGT+TGG - chr5_2:77716984-77717003 None:intergenic 40.0%
TTGAGTCCAATGACTTTGTC+TGG - chr5_2:77717258-77717277 None:intergenic 40.0%
GAGTTGGAGAAGAATGGTAA+GGG - chr5_2:77717301-77717320 None:intergenic 40.0%
! TGAGTTGGAGAAGAATGGTA+AGG - chr5_2:77717302-77717321 None:intergenic 40.0%
GGCCTTCTATTTCATTGAGT+TGG - chr5_2:77717317-77717336 None:intergenic 40.0%
AGCAACGATTAACTCAGAGA+AGG + chr5_2:77717795-77717814 Msa0789410:CDS 40.0%
CAATCTAGCACTGTGAAATG+TGG - chr5_2:77717836-77717855 None:intergenic 40.0%
!!! CAGGGGTTTTAGGAGTAATA+AGG - chr5_2:77717885-77717904 None:intergenic 40.0%
TAATGTCGTTGAACACTGCA+GGG - chr5_2:77717903-77717922 None:intergenic 40.0%
AGTGTTCAACGACATTAGTG+TGG + chr5_2:77717906-77717925 Msa0789410:CDS 40.0%
TTTACTATCTCCTGGACAGA+AGG - chr5_2:77715666-77715685 None:intergenic 40.0%
TAGATACAACTAGAGGGTCT+TGG - chr5_2:77715731-77715750 None:intergenic 40.0%
AAATCGATGACTGGAACTTG+TGG - chr5_2:77715768-77715787 None:intergenic 40.0%
AACGGTTGTGTGTTTGACAA+AGG + chr5_2:77715929-77715948 Msa0789410:intron 40.0%
! TGCTCGTCCTCGATAAATTT+TGG - chr5_2:77716265-77716284 None:intergenic 40.0%
TCACGGAGTCAATCCTTTAT+TGG + chr5_2:77716753-77716772 Msa0789410:CDS 40.0%
AGACTTCTTCAATCTACCAG+TGG + chr5_2:77716801-77716820 Msa0789410:CDS 40.0%
ATCTCAGAAACCAGGTGATA+TGG + chr5_2:77716840-77716859 Msa0789410:CDS 40.0%
!! AGGTTTTGGTCAACTGTTTG+TGG + chr5_2:77716864-77716883 Msa0789410:CDS 40.0%
TCAACTGTTTGTGGTATCAG+AGG + chr5_2:77716873-77716892 Msa0789410:CDS 40.0%
GGTATCAGAGGATCACAAAT+TGG + chr5_2:77716885-77716904 Msa0789410:CDS 40.0%
CAGAGGATCACAAATTGGAA+TGG + chr5_2:77716890-77716909 Msa0789410:CDS 40.0%
CTGAATTGTTGGGGAATACT+AGG - chr5_2:77716973-77716992 None:intergenic 40.0%
CTAGTATTCCCCAACAATTC+AGG + chr5_2:77716971-77716990 Msa0789410:CDS 40.0%
GGAAAGAACCTGAATTGTTG+GGG - chr5_2:77716982-77717001 None:intergenic 40.0%
GGGAAAGAACCTGAATTGTT+GGG - chr5_2:77716983-77717002 None:intergenic 40.0%
AGGGAAAGAACCTGAATTGT+TGG - chr5_2:77716984-77717003 None:intergenic 40.0%
TTGAGTCCAATGACTTTGTC+TGG - chr5_2:77717258-77717277 None:intergenic 40.0%
GAGTTGGAGAAGAATGGTAA+GGG - chr5_2:77717301-77717320 None:intergenic 40.0%
! TGAGTTGGAGAAGAATGGTA+AGG - chr5_2:77717302-77717321 None:intergenic 40.0%
GGCCTTCTATTTCATTGAGT+TGG - chr5_2:77717317-77717336 None:intergenic 40.0%
AGCAACGATTAACTCAGAGA+AGG + chr5_2:77717795-77717814 Msa0789410:CDS 40.0%
CAATCTAGCACTGTGAAATG+TGG - chr5_2:77717836-77717855 None:intergenic 40.0%
!!! CAGGGGTTTTAGGAGTAATA+AGG - chr5_2:77717885-77717904 None:intergenic 40.0%
TAATGTCGTTGAACACTGCA+GGG - chr5_2:77717903-77717922 None:intergenic 40.0%
AGTGTTCAACGACATTAGTG+TGG + chr5_2:77717906-77717925 Msa0789410:CDS 40.0%
! TGGGTTGCTTTACTATCTCC+TGG - chr5_2:77715674-77715693 None:intergenic 45.0%
!! CGTTCTGGAACTTTGGTGAT+GGG - chr5_2:77715693-77715712 None:intergenic 45.0%
!! TCGTTCTGGAACTTTGGTGA+TGG - chr5_2:77715694-77715713 None:intergenic 45.0%
TTGATCATGCCTGCAGAGAA+TGG + chr5_2:77715832-77715851 Msa0789410:CDS 45.0%
TGATCATGCCTGCAGAGAAT+GGG + chr5_2:77715833-77715852 Msa0789410:CDS 45.0%
AAAGAAACCCCATTCTCTGC+AGG - chr5_2:77715844-77715863 None:intergenic 45.0%
CAGAGAATGGGGTTTCTTTC+AGG + chr5_2:77715845-77715864 Msa0789410:CDS 45.0%
GGTGCGATGCTATCATTAGT+TGG + chr5_2:77716519-77716538 Msa0789410:intron 45.0%
CGGAGTCAATCCTTTATTGG+TGG + chr5_2:77716756-77716775 Msa0789410:CDS 45.0%
CAGAAACCAGGTGATATGGA+AGG + chr5_2:77716844-77716863 Msa0789410:CDS 45.0%
CCAAAACCTTCCATATCACC+TGG - chr5_2:77716853-77716872 None:intergenic 45.0%
! CCAGGTGATATGGAAGGTTT+TGG + chr5_2:77716850-77716869 Msa0789410:CDS 45.0%
AAGAGGTAGGCCAATCAATG+AGG + chr5_2:77717205-77717224 Msa0789410:CDS 45.0%
ACTTTGTCTGGTTGAGGACA+AGG - chr5_2:77717246-77717265 None:intergenic 45.0%
CCAATGACTTTGTCTGGTTG+AGG - chr5_2:77717252-77717271 None:intergenic 45.0%
CCTCAACCAGACAAAGTCAT+TGG + chr5_2:77717249-77717268 Msa0789410:CDS 45.0%
GGACTCAATCCTCATTCTGA+TGG + chr5_2:77717270-77717289 Msa0789410:CDS 45.0%
CAACATTGGAGACATGCTAG+AGG + chr5_2:77717398-77717417 Msa0789410:CDS 45.0%
CGATTAACTCAGAGAAGGAG+AGG + chr5_2:77717800-77717819 Msa0789410:CDS 45.0%
AGCACTGTGAAATGTGGCAA+TGG - chr5_2:77717830-77717849 None:intergenic 45.0%
! GGAGTAATAAGGCTTGGTAC+TGG - chr5_2:77717874-77717893 None:intergenic 45.0%
! TTGAACACTGCAGGGGTTTT+AGG - chr5_2:77717895-77717914 None:intergenic 45.0%
AATGTCGTTGAACACTGCAG+GGG - chr5_2:77717902-77717921 None:intergenic 45.0%
CTAATGTCGTTGAACACTGC+AGG - chr5_2:77717904-77717923 None:intergenic 45.0%
TATTTCTCACGCCAGCTTGA+AGG + chr5_2:77717946-77717965 Msa0789410:CDS 45.0%
! TGGGTTGCTTTACTATCTCC+TGG - chr5_2:77715674-77715693 None:intergenic 45.0%
!! CGTTCTGGAACTTTGGTGAT+GGG - chr5_2:77715693-77715712 None:intergenic 45.0%
!! TCGTTCTGGAACTTTGGTGA+TGG - chr5_2:77715694-77715713 None:intergenic 45.0%
TTGATCATGCCTGCAGAGAA+TGG + chr5_2:77715832-77715851 Msa0789410:CDS 45.0%
TGATCATGCCTGCAGAGAAT+GGG + chr5_2:77715833-77715852 Msa0789410:CDS 45.0%
AAAGAAACCCCATTCTCTGC+AGG - chr5_2:77715844-77715863 None:intergenic 45.0%
CAGAGAATGGGGTTTCTTTC+AGG + chr5_2:77715845-77715864 Msa0789410:CDS 45.0%
GGTGCGATGCTATCATTAGT+TGG + chr5_2:77716519-77716538 Msa0789410:intron 45.0%
CGGAGTCAATCCTTTATTGG+TGG + chr5_2:77716756-77716775 Msa0789410:CDS 45.0%
CAGAAACCAGGTGATATGGA+AGG + chr5_2:77716844-77716863 Msa0789410:CDS 45.0%
CCAAAACCTTCCATATCACC+TGG - chr5_2:77716853-77716872 None:intergenic 45.0%
! CCAGGTGATATGGAAGGTTT+TGG + chr5_2:77716850-77716869 Msa0789410:CDS 45.0%
AAGAGGTAGGCCAATCAATG+AGG + chr5_2:77717205-77717224 Msa0789410:CDS 45.0%
ACTTTGTCTGGTTGAGGACA+AGG - chr5_2:77717246-77717265 None:intergenic 45.0%
CCAATGACTTTGTCTGGTTG+AGG - chr5_2:77717252-77717271 None:intergenic 45.0%
CCTCAACCAGACAAAGTCAT+TGG + chr5_2:77717249-77717268 Msa0789410:CDS 45.0%
GGACTCAATCCTCATTCTGA+TGG + chr5_2:77717270-77717289 Msa0789410:CDS 45.0%
CAACATTGGAGACATGCTAG+AGG + chr5_2:77717398-77717417 Msa0789410:CDS 45.0%
CGATTAACTCAGAGAAGGAG+AGG + chr5_2:77717800-77717819 Msa0789410:CDS 45.0%
AGCACTGTGAAATGTGGCAA+TGG - chr5_2:77717830-77717849 None:intergenic 45.0%
! GGAGTAATAAGGCTTGGTAC+TGG - chr5_2:77717874-77717893 None:intergenic 45.0%
! TTGAACACTGCAGGGGTTTT+AGG - chr5_2:77717895-77717914 None:intergenic 45.0%
AATGTCGTTGAACACTGCAG+GGG - chr5_2:77717902-77717921 None:intergenic 45.0%
CTAATGTCGTTGAACACTGC+AGG - chr5_2:77717904-77717923 None:intergenic 45.0%
TATTTCTCACGCCAGCTTGA+AGG + chr5_2:77717946-77717965 Msa0789410:CDS 45.0%
GAAGCTTGGAAGCTCTCTCT+TGG + chr5_2:77715638-77715657 Msa0789410:CDS 50.0%
GATCATGCCTGCAGAGAATG+GGG + chr5_2:77715834-77715853 Msa0789410:CDS 50.0%
GAGTTCAACTCTCGTTGCTC+TGG + chr5_2:77716498-77716517 Msa0789410:intron 50.0%
TTGTCTGGTTGAGGACAAGG+AGG - chr5_2:77717243-77717262 None:intergenic 50.0%
AGGGCAGTACCATCAGAATG+AGG - chr5_2:77717282-77717301 None:intergenic 50.0%
TTGTCGTGCACCGTTAGAAG+TGG + chr5_2:77717479-77717498 Msa0789410:intron 50.0%
GAAGCTTGGAAGCTCTCTCT+TGG + chr5_2:77715638-77715657 Msa0789410:CDS 50.0%
GATCATGCCTGCAGAGAATG+GGG + chr5_2:77715834-77715853 Msa0789410:CDS 50.0%
GAGTTCAACTCTCGTTGCTC+TGG + chr5_2:77716498-77716517 Msa0789410:intron 50.0%
TTGTCTGGTTGAGGACAAGG+AGG - chr5_2:77717243-77717262 None:intergenic 50.0%
AGGGCAGTACCATCAGAATG+AGG - chr5_2:77717282-77717301 None:intergenic 50.0%
TTGTCGTGCACCGTTAGAAG+TGG + chr5_2:77717479-77717498 Msa0789410:intron 50.0%
!! TCTCTTGGTGCCTTCTGTCC+AGG + chr5_2:77715653-77715672 Msa0789410:CDS 55.0%
!! TCTCTTGGTGCCTTCTGTCC+AGG + chr5_2:77715653-77715672 Msa0789410:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 77715618 77718008 77715618 ID=Msa0789410;Name=Msa0789410
chr5_2 mRNA 77715618 77718008 77715618 ID=Msa0789410-mRNA-1;Parent=Msa0789410;Name=Msa0789410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.33|0|1|1|1|4|0|357
chr5_2 exon 77715618 77715866 77715618 ID=Msa0789410-mRNA-1:exon:23540;Parent=Msa0789410-mRNA-1
chr5_2 exon 77716745 77716992 77716745 ID=Msa0789410-mRNA-1:exon:23541;Parent=Msa0789410-mRNA-1
chr5_2 exon 77717095 77717419 77717095 ID=Msa0789410-mRNA-1:exon:23542;Parent=Msa0789410-mRNA-1
chr5_2 exon 77717757 77718008 77717757 ID=Msa0789410-mRNA-1:exon:23543;Parent=Msa0789410-mRNA-1
chr5_2 CDS 77715618 77715866 77715618 ID=Msa0789410-mRNA-1:cds;Parent=Msa0789410-mRNA-1
chr5_2 CDS 77716745 77716992 77716745 ID=Msa0789410-mRNA-1:cds;Parent=Msa0789410-mRNA-1
chr5_2 CDS 77717095 77717419 77717095 ID=Msa0789410-mRNA-1:cds;Parent=Msa0789410-mRNA-1
chr5_2 CDS 77717757 77718008 77717757 ID=Msa0789410-mRNA-1:cds;Parent=Msa0789410-mRNA-1
Gene Sequence

>Msa0789410

ATGGATTCAGAAATGGTAAAGAAGCTTGGAAGCTCTCTCTTGGTGCCTTCTGTCCAGGAGATAGTAAAGCAACCCATCACCAAAGTTCCAGAACGATATGTTCAGCAAAACCAAGACCCTCTAGTTGTATCTAGCACAAAATCTTTACCACAAGTTCCAGTCATCGATTTGAATAAGTTGTTGTCAGAAGAAGATGGAACTGAACTACAAAAGTTTGATCATGCCTGCAGAGAATGGGGTTTCTTTCAGCTGATTAATCACGGAGTCAATCCTTTATTGGTGGAAAATTTTAAAAAACTTGTTCAAGACTTCTTCAATCTACCAGTGGAAGAGAAGAAAATATTATCTCAGAAACCAGGTGATATGGAAGGTTTTGGTCAACTGTTTGTGGTATCAGAGGATCACAAATTGGAATGGGCAGATTTATTCTACATTATCACTCAACCATCATACATGAGAAATCCAAACTTATTTCCTAGTATTCCCCAACAATTCAGAGAAAATCTAGAGATGTACTCTTTAGAACTGAAAAAGCTATGTGTGACGATCATTGAATTTATGTCAAAAGCATTAAAGATCCAAAACAATGAATTGCTAGAATTATTTGAAGAGGTAGGCCAATCAATGAGGATGAATTACTATCCTCCTTGTCCTCAACCAGACAAAGTCATTGGACTCAATCCTCATTCTGATGGTACTGCCCTTACCATTCTTCTCCAACTCAATGAAATAGAAGGCCTTCAAATAAAAAAAGATGGAATGTGGATTCCTATTAAGCCTCTAACAAATGCTTTTGTTATCAACATTGGAGACATGCTAGAGATAATGACGAATGGTATTTATCGAAGTATTGAACATCGAGCAACGATTAACTCAGAGAAGGAGAGGATTTCCATTGCCACATTTCACAGTGCTAGATTGAATGCAATTCTTGCTCCAGTACCAAGCCTTATTACTCCTAAAACCCCTGCAGTGTTCAACGACATTAGTGTGGAAGATTTCTTCAAAGGATATTTCTCACGCCAGCTTGAAGGAAAAATGTACATTGATGACATGAGGATGAAAAATGAGTGA

Protein sequence

>Msa0789410

MDSEMVKKLGSSLLVPSVQEIVKQPITKVPERYVQQNQDPLVVSSTKSLPQVPVIDLNKLLSEEDGTELQKFDHACREWGFFQLINHGVNPLLVENFKKLVQDFFNLPVEEKKILSQKPGDMEGFGQLFVVSEDHKLEWADLFYIITQPSYMRNPNLFPSIPQQFRENLEMYSLELKKLCVTIIEFMSKALKIQNNELLELFEEVGQSMRMNYYPPCPQPDKVIGLNPHSDGTALTILLQLNEIEGLQIKKDGMWIPIKPLTNAFVINIGDMLEIMTNGIYRSIEHRATINSEKERISIATFHSARLNAILAPVPSLITPKTPAVFNDISVEDFFKGYFSRQLEGKMYIDDMRMKNE*