AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1038610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038610 MtrunA17_Chr7g0273731 94.558 147 8 0 1 147 84 230 8.86e-99 294
Msa1038610 MtrunA17_Chr7g0273791 85.806 155 18 1 1 151 1 155 6.64e-92 275
Msa1038610 MtrunA17_Chr5g0433641 84.516 155 20 1 1 151 1 155 3.36e-91 273
Msa1038610 MtrunA17_Chr7g0273781 81.935 155 24 1 1 151 34 188 1.72e-88 267
Msa1038610 MtrunA17_Chr7g0273721 81.169 154 25 1 2 151 3 156 9.16e-88 264
Msa1038610 MtrunA17_Chr7g0273741 82.313 147 26 0 1 147 1 147 3.46e-87 252
Msa1038610 MtrunA17_Chr3g0098961 76.190 147 35 0 1 147 4 150 3.18e-81 238
Msa1038610 MtrunA17_Chr7g0273761 75.484 155 33 2 2 151 374 528 8.45e-76 241
Msa1038610 MtrunA17_Chr6g0471371 62.759 145 54 0 6 150 5 149 6.05e-67 201
Msa1038610 MtrunA17_Chr1g0165741 62.676 142 53 0 6 147 5 146 1.56e-65 197
Msa1038610 MtrunA17_Chr1g0165671 62.000 150 53 1 6 151 23 172 2.11e-64 204
Msa1038610 MtrunA17_Chr1g0165661 58.667 150 58 1 6 151 5 154 1.38e-61 196
Msa1038610 MtrunA17_Chr1g0165711 59.333 150 57 1 6 151 5 154 1.08e-59 191
Msa1038610 MtrunA17_Chr1g0165681 56.667 150 61 1 6 151 5 154 4.55e-59 190
Msa1038610 MtrunA17_Chr8g0353421 62.205 127 48 0 3 129 2 128 7.97e-58 177
Msa1038610 MtrunA17_Chr1g0191081 57.792 154 59 3 3 151 11 163 8.58e-56 181
Msa1038610 MtrunA17_Chr7g0273681 90.385 52 5 0 92 143 1 52 2.25e-29 102
Msa1038610 MtrunA17_Chr7g0224391 34.615 130 82 2 13 142 19 145 1.32e-22 93.2
Msa1038610 MtrunA17_Chr8g0386141 31.757 148 94 3 8 151 5 149 8.76e-22 90.9
Msa1038610 MtrunA17_Chr7g0273671 88.372 43 5 0 1 43 1 43 3.60e-20 78.6
Msa1038610 MtrunA17_Chr3g0132001 34.694 147 87 3 10 151 14 156 1.13e-19 84.7
Msa1038610 MtrunA17_Chr7g0270771 39.423 104 58 1 9 112 4 102 2.60e-18 79.3
Msa1038610 MtrunA17_Chr3g0141851 32.593 135 79 3 18 147 20 147 5.53e-18 80.1
Msa1038610 MtrunA17_Chr4g0027071 35.484 124 74 2 17 136 19 140 2.91e-16 75.1
Msa1038610 MtrunA17_Chr4g0004691 37.374 99 56 2 18 116 12 104 3.74e-16 72.0
Msa1038610 MtrunA17_Chr6g0471981 65.957 47 16 0 101 147 1 47 4.59e-16 68.9
Msa1038610 MtrunA17_Chr5g0414431 53.571 56 21 1 52 107 2 52 7.21e-15 65.5
Msa1038610 MtrunA17_Chr3g0113821 36.937 111 68 2 9 117 4 114 8.02e-14 68.2
Msa1038610 MtrunA17_Chr2g0334001 30.000 150 95 5 6 151 1 144 8.95e-13 65.1
Msa1038610 MtrunA17_Chr7g0253531 30.128 156 97 6 17 166 9 158 2.20e-12 63.9
Msa1038610 MtrunA17_Chr7g0253501 30.128 156 97 6 17 166 9 158 2.67e-12 63.9
Msa1038610 MtrunA17_Chr2g0311411 31.532 111 72 3 6 116 1 107 5.15e-12 60.5
Msa1038610 MtrunA17_Chr4g0001861 33.913 115 69 3 41 151 33 144 5.24e-12 62.8
Msa1038610 MtrunA17_Chr8g0371821 31.532 111 72 3 6 116 1 107 8.20e-12 62.4
Msa1038610 MtrunA17_Chr3g0087401 34.343 99 62 2 18 116 10 105 1.00e-11 62.0
Msa1038610 MtrunA17_Chr2g0306321 29.032 155 93 6 8 151 24 172 2.35e-11 61.2
Msa1038610 MtrunA17_Chr5g0438701 33.043 115 65 4 16 123 9 118 8.64e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038610 AT5G17540.1 59.355 155 56 3 3 151 2 155 2.29e-57 186
Msa1038610 AT3G03480.1 56.410 156 61 3 2 151 11 165 5.29e-51 169
Msa1038610 AT3G48720.1 34.228 149 90 4 8 151 7 152 1.24e-22 93.6
Msa1038610 AT5G41040.1 35.338 133 83 2 10 142 33 162 1.73e-21 90.5
Msa1038610 AT5G41040.2 35.338 133 83 2 10 142 17 146 2.11e-21 90.1
Msa1038610 AT5G63560.1 34.667 150 85 4 10 151 9 153 8.10e-21 88.6
Msa1038610 AT1G27620.1 38.235 136 76 4 13 147 12 140 1.67e-20 87.4
Msa1038610 AT5G57840.1 35.514 107 65 2 10 115 3 106 5.11e-15 72.0
Msa1038610 AT2G19070.1 33.577 137 83 3 36 168 29 161 3.57e-13 66.6
Msa1038610 AT5G48930.1 31.690 142 89 4 17 154 10 147 3.94e-13 66.6
Msa1038610 AT3G62160.1 34.234 111 67 2 6 115 1 106 6.52e-13 65.9
Msa1038610 AT2G40230.1 37.500 104 58 3 10 109 5 105 9.18e-13 65.5
Msa1038610 AT3G47170.1 34.513 113 69 3 8 115 10 122 1.32e-12 65.1
Msa1038610 AT5G07080.1 34.483 116 73 3 3 115 7 122 1.52e-12 65.1

Find 137 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTCTGTAATGGTATT+TGG 0.142330 7_1:+75506055 None:intergenic
TCTATAAATGTTGATGTATT+TGG 0.151948 7_1:+75505222 None:intergenic
AAACTTGCACATGAAATTTA+AGG 0.187512 7_1:+75509712 None:intergenic
GCATGTCTAAGAACTTTAAT+AGG 0.218647 7_1:+75509303 None:intergenic
CTGTTCCTGCTCTGCTGCTT+GGG 0.220945 7_1:+75507134 None:intergenic
AGCAGATCTTATGGTTATTA+AGG 0.242062 7_1:-75505666 Msa1038610:three_prime_UTR
AAGTTCAAAGAAGTGGATTT+TGG 0.248604 7_1:-75505587 Msa1038610:three_prime_UTR
ATGTAACACTTGATCAATTT+GGG 0.256344 7_1:-75509161 Msa1038610:CDS
AAATTTGTTCGTATTCAAAA+TGG 0.285497 7_1:+75506083 None:intergenic
ATCCCACATAAGAATGTAAA+AGG 0.288527 7_1:-75505494 Msa1038610:three_prime_UTR
GATGTAACACTTGATCAATT+TGG 0.298925 7_1:-75509162 Msa1038610:CDS
TCCCCACTTGTTGGATATTA+CGG 0.303989 7_1:-75505815 Msa1038610:three_prime_UTR
TGCTTGGCAACGACACAATA+AGG 0.312592 7_1:-75509647 Msa1038610:five_prime_UTR
ATCCATTTGCAGGAAGGATT+AGG 0.320371 7_1:-75509254 Msa1038610:CDS
CCATTCAACCTGTATGGAAT+AGG 0.323735 7_1:-75506147 Msa1038610:three_prime_UTR
GCATTCTGTAGCAGATCTTA+TGG 0.324794 7_1:-75505675 Msa1038610:three_prime_UTR
TCCATTTGCAGGAAGGATTA+GGG 0.331515 7_1:-75509253 Msa1038610:CDS
TTTGGGTGATGAATATTATT+GGG 0.337019 7_1:+75509688 None:intergenic
AAGCTTTGTGGAAACTCATT+AGG 0.345233 7_1:-75505752 Msa1038610:three_prime_UTR
AACTAGGAACCATTTGCTTT+AGG 0.348486 7_1:+75505377 None:intergenic
CCCGCGGTGGTGACAGCTGC+CGG 0.349688 7_1:+75505776 None:intergenic
GCAGCTGGTGGCACCAGCTC+TGG 0.355758 7_1:+75509441 None:intergenic
GTGTATTACTATCCATTTGC+AGG 0.355829 7_1:-75509264 Msa1038610:CDS
TCTGTTCCTGCTCTGCTGCT+TGG 0.356452 7_1:+75507133 None:intergenic
CACAAAAGCATTGCAGTTAG+AGG 0.365161 7_1:-75505900 Msa1038610:three_prime_UTR
ATTCTTATGTGGGATGATAT+AGG 0.365851 7_1:+75505502 None:intergenic
GGATGGGGTGAGGCGGTGTA+TGG 0.375232 7_1:-75505566 Msa1038610:three_prime_UTR
CATAGCCACGCTTCGTCTCT+TGG 0.377968 7_1:-75505987 Msa1038610:three_prime_UTR
CATGAATGCCTGGGCAGAAA+TGG 0.382624 7_1:-75506191 Msa1038610:three_prime_UTR
CTCCGCACTGTGAACAATAA+TGG 0.390252 7_1:+75509471 None:intergenic
CTCTAAAGAAGAAAGATTGA+TGG 0.391556 7_1:+75506017 None:intergenic
CATGTCTAAGAACTTTAATA+GGG 0.395837 7_1:+75509304 None:intergenic
AGGAACAGATTCAGAAGATT+AGG 0.404003 7_1:-75507119 Msa1038610:exon
TGCTAATGAAAGAATTGTTC+TGG 0.406569 7_1:-75507178 Msa1038610:intron
CATTCAACCTGTATGGAATA+GGG 0.408225 7_1:-75506146 Msa1038610:three_prime_UTR
TATTCATGAACACGTGGAAT+AGG 0.410021 7_1:+75509763 None:intergenic
TCCCTAATCCTTCCTGCAAA+TGG 0.413944 7_1:+75509252 None:intergenic
GTTCTTTGAAGCATGGGAAT+GGG 0.414516 7_1:+75509124 None:intergenic
AACCTTCCATTCAACCTGTA+TGG 0.427456 7_1:-75506153 Msa1038610:three_prime_UTR
GGAAGGATTAGGGAGGGTGC+TGG 0.433324 7_1:-75509243 Msa1038610:CDS
TGAAACTATTCATGAATGCC+TGG 0.438374 7_1:-75506201 Msa1038610:three_prime_UTR
GAACTTCTATACGATGTTCC+AGG 0.439564 7_1:-75509105 Msa1038610:CDS
TTTACCTGTATGAGTCGAAT+GGG 0.448569 7_1:+75509060 None:intergenic
CAGCTCCATCGCTCATTGTA+TGG 0.451440 7_1:+75506227 None:intergenic
CAAAATTAACCTAAAGCAAA+TGG 0.452519 7_1:-75505386 Msa1038610:three_prime_UTR
CCTATTCCATACAGGTTGAA+TGG 0.453015 7_1:+75506147 None:intergenic
GTTTATATCACATGCTTACA+TGG 0.453078 7_1:-75509616 Msa1038610:five_prime_UTR
ACCACCGCGGGGAAGCTTTG+TGG 0.458585 7_1:-75505764 Msa1038610:three_prime_UTR
GTATCGGAATCTAACTTGAC+AGG 0.458671 7_1:+75509812 None:intergenic
GAAGATTAGGATCACTTGTT+GGG 0.459318 7_1:-75507106 Msa1038610:exon
CTGGTGGCACCAGCTCTGGT+TGG 0.466144 7_1:+75509445 None:intergenic
TGACGATAGATAAACATCAT+AGG 0.470860 7_1:+75509351 None:intergenic
AAGAATGTAAAAGGAGAAGA+AGG 0.472789 7_1:-75505485 Msa1038610:three_prime_UTR
AAATAAATATTTGCGGTCTC+CGG 0.473725 7_1:+75505175 None:intergenic
TCCTCGAGCCATTTCTGCCC+AGG 0.474546 7_1:+75506183 None:intergenic
AGAAGATTAGGATCACTTGT+TGG 0.479269 7_1:-75507107 Msa1038610:exon
AGAATCTCCCTATTCCATAC+AGG 0.480630 7_1:+75506139 None:intergenic
TCAATAATTAGTTCTGATCC+TGG 0.483822 7_1:+75509087 None:intergenic
TTCCATACAGGTTGAATGGA+AGG 0.484244 7_1:+75506151 None:intergenic
GTGCATTGACGAAGGTGAAA+TGG 0.485395 7_1:+75505962 None:intergenic
GTCAACCATTCCCCACTTGT+TGG 0.487122 7_1:-75505824 Msa1038610:three_prime_UTR
AGTTCTTTGAAGCATGGGAA+TGG 0.487665 7_1:+75509123 None:intergenic
ATATAGGCTGCTCCAGGAAA+AGG 0.487690 7_1:+75505518 None:intergenic
TGGGGTGAGGCGGTGTATGG+TGG 0.491453 7_1:-75505563 Msa1038610:three_prime_UTR
GCGGAGGAGCCAACCAGAGC+TGG 0.493190 7_1:-75509454 Msa1038610:CDS
CCGCCCCATTCGACTCATAC+AGG 0.494546 7_1:-75509064 Msa1038610:intron
CCGGCAGCTGTCACCACCGC+GGG 0.498263 7_1:-75505776 Msa1038610:three_prime_UTR
ATGGAATAGGGAGATTCTAA+TGG 0.500842 7_1:-75506134 Msa1038610:three_prime_UTR
TGTTCCTGCTCTGCTGCTTG+GGG 0.503456 7_1:+75507135 None:intergenic
AGCAGTATCTTCTTCTGTAA+TGG 0.504247 7_1:+75506048 None:intergenic
ATACAGAAATTGAAAAGATA+AGG 0.505757 7_1:+75509592 None:intergenic
TCGTATAAAGTTCAAAGAAG+TGG 0.508593 7_1:-75505594 Msa1038610:three_prime_UTR
TAGTTTAACTTCACGAGGAG+TGG 0.511679 7_1:+75509416 None:intergenic
TATAGAAGTTCTTTGAAGCA+TGG 0.512144 7_1:+75509117 None:intergenic
GAAGGATTAGGGAGGGTGCT+GGG 0.520089 7_1:-75509242 Msa1038610:CDS
TTCTTTGAAGCATGGGAATG+GGG 0.526135 7_1:+75509125 None:intergenic
ATGATAAACATGACAAAACT+AGG 0.530951 7_1:+75505361 None:intergenic
CCGCGGTGGTGACAGCTGCC+GGG 0.534362 7_1:+75505777 None:intergenic
ATAGAAGTTCTTTGAAGCAT+GGG 0.535113 7_1:+75509118 None:intergenic
GGGGTGATGAAGTGATTTCA+CGG 0.538787 7_1:+75507155 None:intergenic
GTTCCTGCTCTGCTGCTTGG+GGG 0.542287 7_1:+75507136 None:intergenic
GGACAGAAGTCTATCTTGAA+AGG 0.552346 7_1:+75509784 None:intergenic
AAACCTCTTCATATCTTCAA+AGG 0.555864 7_1:+75505439 None:intergenic
TAGAGGCAGATGAAGAGATA+CGG 0.557350 7_1:-75505883 Msa1038610:three_prime_UTR
TACCGTAATATCCAACAAGT+GGG 0.559051 7_1:+75505813 None:intergenic
GAAACTATTCATGAATGCCT+GGG 0.560588 7_1:-75506200 Msa1038610:three_prime_UTR
ATCTTGAAAGGATTTAGTAT+CGG 0.561314 7_1:+75509796 None:intergenic
GGATCACAAATAAATATTTG+CGG 0.562992 7_1:+75505168 None:intergenic
ATTACTATCCATTTGCAGGA+AGG 0.563934 7_1:-75509260 Msa1038610:CDS
ATCTTATGGTTATTAAGGAA+CGG 0.564453 7_1:-75505661 Msa1038610:three_prime_UTR
AATATCCAACAAGTGGGGAA+TGG 0.565017 7_1:+75505819 None:intergenic
TGCTGGGCGTAAGTTGATGA+TGG 0.565605 7_1:-75509226 Msa1038610:CDS
ATTAGGTTATGCTGTGGAGT+TGG 0.566011 7_1:-75505735 Msa1038610:three_prime_UTR
ATGATGGATTGTACTGGTGA+GGG 0.570664 7_1:-75509210 Msa1038610:CDS
TCACGAGGAGTGGAAGCAGC+TGG 0.571211 7_1:+75509426 None:intergenic
GGTGTTTATTTACAACTACA+AGG 0.572054 7_1:-75505640 Msa1038610:three_prime_UTR
TCCACAAAGCTTCCCCGCGG+TGG 0.581894 7_1:+75505763 None:intergenic
TGTCCTTTGAAGATATGAAG+AGG 0.589462 7_1:-75505442 Msa1038610:three_prime_UTR
AAAGAGTTAGATGAGATGCT+TGG 0.590438 7_1:-75505413 Msa1038610:three_prime_UTR
GGGATGATATAGGCTGCTCC+AGG 0.591783 7_1:+75505512 None:intergenic
ATCACTTGTTGGGAAGATGA+AGG 0.597456 7_1:-75507096 Msa1038610:three_prime_UTR
GCATGAAACCACCGCACTTG+AGG 0.601841 7_1:+75506266 None:intergenic
TTGAACCATACAATGAGCGA+TGG 0.603418 7_1:-75506232 Msa1038610:three_prime_UTR
CATACAATGAGCGATGGAGC+TGG 0.610758 7_1:-75506226 Msa1038610:three_prime_UTR
TCTTTGAAGCATGGGAATGG+GGG 0.613320 7_1:+75509126 None:intergenic
ATCCATGTAAAATAAAGTTG+TGG 0.619116 7_1:-75505149 Msa1038610:three_prime_UTR
TTACCGTAATATCCAACAAG+TGG 0.622647 7_1:+75505812 None:intergenic
GATGATGGATTGTACTGGTG+AGG 0.634613 7_1:-75509211 Msa1038610:CDS
ATTAAAAGCTGAAGTTACAG+AGG 0.635766 7_1:-75505705 Msa1038610:three_prime_UTR
TGTAACACTTGATCAATTTG+GGG 0.637489 7_1:-75509160 Msa1038610:CDS
TCTGACATAGATGATCAAGA+AGG 0.638298 7_1:-75509390 Msa1038610:CDS
CGAGGAGTGGAAGCAGCTGG+TGG 0.639794 7_1:+75509429 None:intergenic
GGTTGCATGTAATGCGTGGA+GGG 0.643184 7_1:+75506104 None:intergenic
AAGTTGATGATGGATTGTAC+TGG 0.644442 7_1:-75509216 Msa1038610:CDS
CATTATTGTTCACAGTGCGG+AGG 0.651919 7_1:-75509470 Msa1038610:CDS
GCCTGGGCAGAAATGGCTCG+AGG 0.654434 7_1:-75506184 Msa1038610:three_prime_UTR
TGAAGCGATAAGATCGAATG+TGG 0.660160 7_1:+75505940 None:intergenic
GCATCGTCAATGCACGCTCG+AGG 0.662333 7_1:-75505853 Msa1038610:three_prime_UTR
TTTGCAGGAAGGATTAGGGA+GGG 0.663911 7_1:-75509249 Msa1038610:CDS
AAACTCATTAGGTTATGCTG+TGG 0.666130 7_1:-75505741 Msa1038610:three_prime_UTR
GATAATAGTTTAACTTCACG+AGG 0.669478 7_1:+75509411 None:intergenic
TTACCTGTATGAGTCGAATG+GGG 0.671022 7_1:+75509061 None:intergenic
CACCATTATTGTTCACAGTG+CGG 0.673411 7_1:-75509473 Msa1038610:CDS
TGGAACCAAGAGACGAAGCG+TGG 0.675197 7_1:+75505982 None:intergenic
ATTTGCAGGAAGGATTAGGG+AGG 0.677174 7_1:-75509250 Msa1038610:CDS
ATTACGTATTCATGAACACG+TGG 0.680316 7_1:+75509757 None:intergenic
GTGACACGCCTCAAGTGCGG+TGG 0.681359 7_1:-75506274 Msa1038610:three_prime_UTR
CCTGTATGAGTCGAATGGGG+CGG 0.682735 7_1:+75509064 None:intergenic
TAGGTGACACGCCTCAAGTG+CGG 0.682839 7_1:-75506277 Msa1038610:three_prime_UTR
ACCGTAATATCCAACAAGTG+GGG 0.686393 7_1:+75505814 None:intergenic
AAATGGTTGCATGTAATGCG+TGG 0.690356 7_1:+75506100 None:intergenic
ACTTGTTGGGAAGATGAAGG+AGG 0.699252 7_1:-75507093 Msa1038610:intron
CGAATGTGGTGCATTGACGA+AGG 0.710870 7_1:+75505954 None:intergenic
TGGTTGCATGTAATGCGTGG+AGG 0.714540 7_1:+75506103 None:intergenic
GAATTGTGTACGTAAACCTG+TGG 0.747356 7_1:+75509558 None:intergenic
CGGCAGCTGTCACCACCGCG+GGG 0.749713 7_1:-75505775 Msa1038610:three_prime_UTR
GTTTCCACAAAGCTTCCCCG+CGG 0.764073 7_1:+75505760 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTATAAATTAAAAAA+TGG - chr7_1:75506722-75506741 Msa1038610:intron 0.0%
!!! ACATTTTAAGATATTATATT+TGG + chr7_1:75506519-75506538 None:intergenic 10.0%
!! TTAAATAGTAAAGATAAAAA+CGG + chr7_1:75507323-75507342 None:intergenic 10.0%
!!! TATCTTTACTATTTAAAATT+TGG - chr7_1:75507327-75507346 Msa1038610:intron 10.0%
!!! AGGTTTAAAATTAATAAAAT+AGG - chr7_1:75507938-75507957 Msa1038610:intron 10.0%
!!! TTAATTATTTTTTTTCGAAT+TGG + chr7_1:75508025-75508044 None:intergenic 10.0%
!! GAAAAAAAATAATTAAGTTA+AGG - chr7_1:75508029-75508048 Msa1038610:intron 10.0%
!!! TATTATATTTGTTATATTGT+TGG + chr7_1:75508480-75508499 None:intergenic 10.0%
!! ACTATATATAAAAAACATAA+GGG + chr7_1:75508585-75508604 None:intergenic 10.0%
!! TACTATATATAAAAAACATA+AGG + chr7_1:75508586-75508605 None:intergenic 10.0%
!!! AATCGCATTTTTTATTTTTT+GGG + chr7_1:75505267-75505286 None:intergenic 15.0%
!!! AAATCGCATTTTTTATTTTT+TGG + chr7_1:75505268-75505287 None:intergenic 15.0%
!!! TTTTTTTTATAATATGTTCC+AGG - chr7_1:75505970-75505989 Msa1038610:three_prime_UTR 15.0%
!! TAAACCCTATTTAAAAAAAT+TGG - chr7_1:75506491-75506510 Msa1038610:intron 15.0%
!! ATGTATAAGTGATTTAAATT+TGG - chr7_1:75506535-75506554 Msa1038610:intron 15.0%
!! AAAAGTTATGAAAATTAACA+TGG - chr7_1:75506606-75506625 Msa1038610:intron 15.0%
!! AAAGTTATGAAAATTAACAT+GGG - chr7_1:75506607-75506626 Msa1038610:intron 15.0%
!! ATTGAAACAATTAATAGTTA+GGG + chr7_1:75507027-75507046 None:intergenic 15.0%
!! AATTGAAACAATTAATAGTT+AGG + chr7_1:75507028-75507047 None:intergenic 15.0%
!! AACTATTAATTGTTTCAATT+TGG - chr7_1:75507028-75507047 Msa1038610:intron 15.0%
!! AATTTGGATTATGTAATTTA+AGG - chr7_1:75507343-75507362 Msa1038610:intron 15.0%
!!! CTTTTTTTATTTTAGATTAG+AGG + chr7_1:75508086-75508105 None:intergenic 15.0%
!!! CTCTAATCTAAAATAAAAAA+AGG - chr7_1:75508084-75508103 Msa1038610:intron 15.0%
!! TAATACATGTAAATTATGAA+CGG - chr7_1:75508357-75508376 Msa1038610:intron 15.0%
!!! AAATTTGTTCTGTTTATAAT+TGG - chr7_1:75508546-75508565 Msa1038610:intron 15.0%
!! TATAACATATATCTTGATAT+TGG - chr7_1:75508622-75508641 Msa1038610:intron 15.0%
!!! TAAACTTTTACTTAAATTTG+AGG - chr7_1:75509737-75509756 Msa1038610:five_prime_UTR 15.0%
!! ATACAGAAATTGAAAAGATA+AGG + chr7_1:75505346-75505365 None:intergenic 20.0%
!!! TTTCAATTTCTGTATTTTTG+TGG - chr7_1:75505351-75505370 Msa1038610:three_prime_UTR 20.0%
!! AGTGAGTATGTAAAATTTAT+TGG + chr7_1:75505949-75505968 None:intergenic 20.0%
!!! ATTGGAATATACGATTTTTT+TGG + chr7_1:75506277-75506296 None:intergenic 20.0%
!! ATTCCATTTCAAAAAATTTG+TGG + chr7_1:75506443-75506462 None:intergenic 20.0%
!!! GGATCCAATTTTTTTAAATA+GGG + chr7_1:75506498-75506517 None:intergenic 20.0%
!!! TGGATCCAATTTTTTTAAAT+AGG + chr7_1:75506499-75506518 None:intergenic 20.0%
!!! AATTTTTTTAGAGGATGTTT+AGG - chr7_1:75506791-75506810 Msa1038610:intron 20.0%
!!! CAAAATCATATCAATTTTCT+AGG - chr7_1:75506860-75506879 Msa1038610:intron 20.0%
!!! CATGTTTTCTAACAAATTTT+TGG - chr7_1:75506952-75506971 Msa1038610:intron 20.0%
!! CGAAAAAAGAATTAAGTTAA+GGG + chr7_1:75506996-75507015 None:intergenic 20.0%
!! TCGAAAAAAGAATTAAGTTA+AGG + chr7_1:75506997-75507016 None:intergenic 20.0%
!!! ACTTAATTCTTTTTTCGAAT+TGG - chr7_1:75506999-75507018 Msa1038610:intron 20.0%
!! TTGAAACAATTAATAGTTAG+GGG + chr7_1:75507026-75507045 None:intergenic 20.0%
!!! GATATACTTTTTTTTTTCCT+GGG + chr7_1:75507243-75507262 None:intergenic 20.0%
!!! TGATATACTTTTTTTTTTCC+TGG + chr7_1:75507244-75507263 None:intergenic 20.0%
!!! AACGTTGTAAATTATGTTTT+GGG + chr7_1:75507440-75507459 None:intergenic 20.0%
!!! AAACGTTGTAAATTATGTTT+TGG + chr7_1:75507441-75507460 None:intergenic 20.0%
!! TCTATAGAAAAAAAATTCAC+AGG + chr7_1:75507511-75507530 None:intergenic 20.0%
!! ATAACAAACAACAATTGATT+CGG + chr7_1:75507668-75507687 None:intergenic 20.0%
!!! TGTTGTTTGTTATTGATTAA+TGG - chr7_1:75507675-75507694 Msa1038610:intron 20.0%
!! AACTATTAAACGTTTCAATT+TGG + chr7_1:75507996-75508015 None:intergenic 20.0%
!!! TGATTTTCATGTAAAAAAGA+CGG - chr7_1:75508297-75508316 Msa1038610:intron 20.0%
!! TCATTGTAAAAGATAAATTG+GGG + chr7_1:75508455-75508474 None:intergenic 20.0%
!! GTCATTGTAAAAGATAAATT+GGG + chr7_1:75508456-75508475 None:intergenic 20.0%
!! TGTCATTGTAAAAGATAAAT+TGG + chr7_1:75508457-75508476 None:intergenic 20.0%
!!! TAAAAAACATAAGGGATTTT+GGG + chr7_1:75508577-75508596 None:intergenic 20.0%
!!! ATAAAAAACATAAGGGATTT+TGG + chr7_1:75508578-75508597 None:intergenic 20.0%
!! TATTGGATTCAAAATATGAT+AGG - chr7_1:75508639-75508658 Msa1038610:intron 20.0%
!!! AAATTTGTTCGTATTCAAAA+TGG + chr7_1:75508855-75508874 None:intergenic 20.0%
!! TCTATAAATGTTGATGTATT+TGG + chr7_1:75509716-75509735 None:intergenic 20.0%
! ATCTTGAAAGGATTTAGTAT+CGG + chr7_1:75505142-75505161 None:intergenic 25.0%
! AAACTTGCACATGAAATTTA+AGG + chr7_1:75505226-75505245 None:intergenic 25.0%
! TTTGGGTGATGAATATTATT+GGG + chr7_1:75505250-75505269 None:intergenic 25.0%
!!! TTTTGGGTGATGAATATTAT+TGG + chr7_1:75505251-75505270 None:intergenic 25.0%
!! ATAAAAAATGCGATTTTGCT+TGG - chr7_1:75505272-75505291 Msa1038610:three_prime_UTR 25.0%
! CATGTCTAAGAACTTTAATA+GGG + chr7_1:75505634-75505653 None:intergenic 25.0%
! ATGTAACACTTGATCAATTT+GGG - chr7_1:75505774-75505793 Msa1038610:three_prime_UTR 25.0%
! TTTATAATATGTTCCAGGAT+CGG - chr7_1:75505975-75505994 Msa1038610:three_prime_UTR 25.0%
! CATCTGTAACAACATAAAAT+TGG + chr7_1:75506295-75506314 None:intergenic 25.0%
!! AAATTAGTACACCTTTTAAG+TGG - chr7_1:75506392-75506411 Msa1038610:intron 25.0%
!!! CGTTTATGCAATTTTTTTAG+AGG - chr7_1:75506782-75506801 Msa1038610:intron 25.0%
! AATAGTAAAGATAAAAACGG+AGG + chr7_1:75507320-75507339 None:intergenic 25.0%
! ATGAAGGAGGTAATATAATT+AGG - chr7_1:75507855-75507874 Msa1038610:intron 25.0%
!!! TTTGTTTTCGTCATCAATTT+GGG + chr7_1:75507060-75507079 None:intergenic 25.0%
! TTGAAACGTTTAATAGTTAG+AGG - chr7_1:75507998-75508017 Msa1038610:intron 25.0%
!! TAGATTAGAGGTTTTCAAAA+AGG + chr7_1:75508074-75508093 None:intergenic 25.0%
! ATCTTATGGTTATTAAGGAA+CGG - chr7_1:75509274-75509293 Msa1038610:CDS 25.0%
! CAAAATTAACCTAAAGCAAA+TGG - chr7_1:75509549-75509568 Msa1038610:five_prime_UTR 25.0%
! ATGATAAACATGACAAAACT+AGG + chr7_1:75509577-75509596 None:intergenic 25.0%
! GGATCACAAATAAATATTTG+CGG + chr7_1:75509770-75509789 None:intergenic 25.0%
! ATCCATGTAAAATAAAGTTG+TGG - chr7_1:75509786-75509805 Msa1038610:five_prime_UTR 25.0%
GTTTATATCACATGCTTACA+TGG - chr7_1:75505319-75505338 Msa1038610:three_prime_UTR 30.0%
! GATAATAGTTTAACTTCACG+AGG + chr7_1:75505527-75505546 None:intergenic 30.0%
TGACGATAGATAAACATCAT+AGG + chr7_1:75505587-75505606 None:intergenic 30.0%
!!! GGGTTTTTTTCTTTCATTGA+CGG + chr7_1:75505614-75505633 None:intergenic 30.0%
GCATGTCTAAGAACTTTAAT+AGG + chr7_1:75505635-75505654 None:intergenic 30.0%
GATGTAACACTTGATCAATT+TGG - chr7_1:75505773-75505792 Msa1038610:three_prime_UTR 30.0%
TGTAACACTTGATCAATTTG+GGG - chr7_1:75505775-75505794 Msa1038610:three_prime_UTR 30.0%
!! ATAGAAGTTCTTTGAAGCAT+GGG + chr7_1:75505820-75505839 None:intergenic 30.0%
!! TATAGAAGTTCTTTGAAGCA+TGG + chr7_1:75505821-75505840 None:intergenic 30.0%
!! TCAATAATTAGTTCTGATCC+TGG + chr7_1:75505851-75505870 None:intergenic 30.0%
TTTATGTTGTTACAGATGCA+TGG - chr7_1:75506297-75506316 Msa1038610:intron 30.0%
! GTCATCTTTTGTTAAAGGTT+TGG + chr7_1:75506333-75506352 None:intergenic 30.0%
! TAGAGGTCATCTTTTGTTAA+AGG + chr7_1:75506338-75506357 None:intergenic 30.0%
ATCTTTAAGCAACTCTTTAG+AGG + chr7_1:75506355-75506374 None:intergenic 30.0%
!!! GCTCCACAAATTTTTTGAAA+TGG - chr7_1:75506437-75506456 Msa1038610:intron 30.0%
GATGACGAAAACAAAGATAA+AGG + chr7_1:75507969-75507988 None:intergenic 30.0%
TGATACACCATTAAATCTGA+TGG + chr7_1:75507140-75507159 None:intergenic 30.0%
! GATGAAAGAGGCATAATATT+AGG + chr7_1:75507169-75507188 None:intergenic 30.0%
ATAAAAACGGAGGTTTGATT+CGG + chr7_1:75507310-75507329 None:intergenic 30.0%
TTTAAGGATTAATTCGAACG+TGG - chr7_1:75507359-75507378 Msa1038610:intron 30.0%
TGCTAATGAAAGAATTGTTC+TGG - chr7_1:75507757-75507776 Msa1038610:intron 30.0%
TGATACACCATTAGATTTGA+TGG - chr7_1:75507884-75507903 Msa1038610:intron 30.0%
AAAATAAGACCGTTGGATAA+AGG + chr7_1:75507914-75507933 None:intergenic 30.0%
!!! CTTTGTTTTCGTCATCAATT+TGG + chr7_1:75507059-75507078 None:intergenic 30.0%
GATGACGAAAACAAAGATAA+AGG - chr7_1:75507969-75507988 Msa1038610:intron 30.0%
TCTTCTTCTGTAATGGTATT+TGG + chr7_1:75508883-75508902 None:intergenic 30.0%
! CTCTAAAGAAGAAAGATTGA+TGG + chr7_1:75508921-75508940 None:intergenic 30.0%
! ATCTTATCGCTTCATGTTTT+TGG - chr7_1:75509004-75509023 Msa1038610:intron 30.0%
ATTAAAAGCTGAAGTTACAG+AGG - chr7_1:75509230-75509249 Msa1038610:CDS 30.0%
AGCAGATCTTATGGTTATTA+AGG - chr7_1:75509269-75509288 Msa1038610:CDS 30.0%
GGTGTTTATTTACAACTACA+AGG - chr7_1:75509295-75509314 Msa1038610:CDS 30.0%
TCGTATAAAGTTCAAAGAAG+TGG - chr7_1:75509341-75509360 Msa1038610:CDS 30.0%
!! AAGTTCAAAGAAGTGGATTT+TGG - chr7_1:75509348-75509367 Msa1038610:CDS 30.0%
ATTCTTATGTGGGATGATAT+AGG + chr7_1:75509436-75509455 None:intergenic 30.0%
ATCCCACATAAGAATGTAAA+AGG - chr7_1:75509441-75509460 Msa1038610:CDS 30.0%
! CTCCTTTTACATTCTTATGT+GGG + chr7_1:75509446-75509465 None:intergenic 30.0%
! TCTCCTTTTACATTCTTATG+TGG + chr7_1:75509447-75509466 None:intergenic 30.0%
AAGAATGTAAAAGGAGAAGA+AGG - chr7_1:75509450-75509469 Msa1038610:CDS 30.0%
AAACCTCTTCATATCTTCAA+AGG + chr7_1:75509499-75509518 None:intergenic 30.0%
!! CTTTTACTTAAATTTGAGGC+CGG - chr7_1:75509741-75509760 Msa1038610:five_prime_UTR 30.0%
AAATAAATATTTGCGGTCTC+CGG + chr7_1:75509763-75509782 None:intergenic 30.0%
!!! GTCCACAACTTTATTTTACA+TGG + chr7_1:75509791-75509810 None:intergenic 30.0%
TATTCATGAACACGTGGAAT+AGG + chr7_1:75505175-75505194 None:intergenic 35.0%
ATTACGTATTCATGAACACG+TGG + chr7_1:75505181-75505200 None:intergenic 35.0%
TCTGACATAGATGATCAAGA+AGG - chr7_1:75505545-75505564 Msa1038610:three_prime_UTR 35.0%
GTGTATTACTATCCATTTGC+AGG - chr7_1:75505671-75505690 Msa1038610:three_prime_UTR 35.0%
ATTACTATCCATTTGCAGGA+AGG - chr7_1:75505675-75505694 Msa1038610:three_prime_UTR 35.0%
!! AAGTTGATGATGGATTGTAC+TGG - chr7_1:75505719-75505738 Msa1038610:three_prime_UTR 35.0%
TTTACCTGTATGAGTCGAAT+GGG + chr7_1:75505878-75505897 None:intergenic 35.0%
! TTTTACCTGTATGAGTCGAA+TGG + chr7_1:75505879-75505898 None:intergenic 35.0%
GAATGCGATAATTGAAACGT+AGG + chr7_1:75505927-75505946 None:intergenic 35.0%
TATGTAATTAGTTCCGATCC+TGG + chr7_1:75505991-75506010 None:intergenic 35.0%
!! TTAGTACACCTTTTAAGTGG+CGG - chr7_1:75506395-75506414 Msa1038610:intron 35.0%
AAAAGAAGACCGTTGGATAA+AGG - chr7_1:75507110-75507129 Msa1038610:exon 35.0%
TAGAAGATGGAAGATGAAAG+AGG + chr7_1:75507181-75507200 None:intergenic 35.0%
GAAGGAGAAGAAATAGAAGA+TGG + chr7_1:75507194-75507213 None:intergenic 35.0%
!!! CTTTTTTTTTTCCTGGGATG+TGG + chr7_1:75507237-75507256 None:intergenic 35.0%
GAAGAAGAAAGAAGGATGAT+TGG + chr7_1:75507272-75507291 None:intergenic 35.0%
GAACAAAAGGAAAACTTGTG+TGG + chr7_1:75507412-75507431 None:intergenic 35.0%
!!! GTTTTGGGTTACAGAACAAA+AGG + chr7_1:75507425-75507444 None:intergenic 35.0%
!! TGTAAGTTTGTGGTGGATTA+TGG - chr7_1:75507609-75507628 Msa1038610:intron 35.0%
!! GTAAGTTTGTGGTGGATTAT+GGG - chr7_1:75507610-75507629 Msa1038610:intron 35.0%
AGGAACAGATTCAGAAGATT+AGG - chr7_1:75507816-75507835 Msa1038610:intron 35.0%
AGAAGATTAGGATCACTTGT+TGG - chr7_1:75507828-75507847 Msa1038610:intron 35.0%
GAAGATTAGGATCACTTGTT+GGG - chr7_1:75507829-75507848 Msa1038610:intron 35.0%
TGAAACTATTCATGAATGCC+TGG - chr7_1:75508734-75508753 Msa1038610:intron 35.0%
GAAACTATTCATGAATGCCT+GGG - chr7_1:75508735-75508754 Msa1038610:intron 35.0%
CATTCAACCTGTATGGAATA+GGG - chr7_1:75508789-75508808 Msa1038610:intron 35.0%
ATGGAATAGGGAGATTCTAA+TGG - chr7_1:75508801-75508820 Msa1038610:intron 35.0%
AGCAGTATCTTCTTCTGTAA+TGG + chr7_1:75508890-75508909 None:intergenic 35.0%
TACCGTAATATCCAACAAGT+GGG + chr7_1:75509125-75509144 None:intergenic 35.0%
TTACCGTAATATCCAACAAG+TGG + chr7_1:75509126-75509145 None:intergenic 35.0%
! AAGCTTTGTGGAAACTCATT+AGG - chr7_1:75509183-75509202 Msa1038610:CDS 35.0%
AAACTCATTAGGTTATGCTG+TGG - chr7_1:75509194-75509213 Msa1038610:CDS 35.0%
!! TCAAAGAAGTGGATTTTGGA+TGG - chr7_1:75509352-75509371 Msa1038610:CDS 35.0%
!! CAAAGAAGTGGATTTTGGAT+GGG - chr7_1:75509353-75509372 Msa1038610:CDS 35.0%
!! AAAGAAGTGGATTTTGGATG+GGG - chr7_1:75509354-75509373 Msa1038610:CDS 35.0%
! TGTCCTTTGAAGATATGAAG+AGG - chr7_1:75509493-75509512 Msa1038610:exon 35.0%
AAAGAGTTAGATGAGATGCT+TGG - chr7_1:75509522-75509541 Msa1038610:five_prime_UTR 35.0%
AACTAGGAACCATTTGCTTT+AGG + chr7_1:75509561-75509580 None:intergenic 35.0%
GTATCGGAATCTAACTTGAC+AGG + chr7_1:75505126-75505145 None:intergenic 40.0%
GGACAGAAGTCTATCTTGAA+AGG + chr7_1:75505154-75505173 None:intergenic 40.0%
!! TGTATTTTTGTGGTCACCAC+AGG - chr7_1:75505361-75505380 Msa1038610:three_prime_UTR 40.0%
GAATTGTGTACGTAAACCTG+TGG + chr7_1:75505380-75505399 None:intergenic 40.0%
CACCATTATTGTTCACAGTG+CGG - chr7_1:75505462-75505481 Msa1038610:three_prime_UTR 40.0%
! TAGTTTAACTTCACGAGGAG+TGG + chr7_1:75505522-75505541 None:intergenic 40.0%
ATCCATTTGCAGGAAGGATT+AGG - chr7_1:75505681-75505700 Msa1038610:three_prime_UTR 40.0%
TCCATTTGCAGGAAGGATTA+GGG - chr7_1:75505682-75505701 Msa1038610:three_prime_UTR 40.0%
!! ATGATGGATTGTACTGGTGA+GGG - chr7_1:75505725-75505744 Msa1038610:three_prime_UTR 40.0%
!! TTCTTTGAAGCATGGGAATG+GGG + chr7_1:75505813-75505832 None:intergenic 40.0%
!! GTTCTTTGAAGCATGGGAAT+GGG + chr7_1:75505814-75505833 None:intergenic 40.0%
!! AGTTCTTTGAAGCATGGGAA+TGG + chr7_1:75505815-75505834 None:intergenic 40.0%
GAACTTCTATACGATGTTCC+AGG - chr7_1:75505830-75505849 Msa1038610:three_prime_UTR 40.0%
TTACCTGTATGAGTCGAATG+GGG + chr7_1:75505877-75505896 None:intergenic 40.0%
CATCTCAAAAAGAAGACCGT+TGG - chr7_1:75507103-75507122 Msa1038610:exon 40.0%
AGGAGGTCCATCAGATTTAA+TGG - chr7_1:75507130-75507149 Msa1038610:CDS 40.0%
GCGATATGAAGTTCATAGGA+AGG + chr7_1:75507212-75507231 None:intergenic 40.0%
!!! TTTTTTTTCCTGGGATGTGG+TGG + chr7_1:75507234-75507253 None:intergenic 40.0%
GAACGTGGACAATCACAAAA+CGG - chr7_1:75507374-75507393 Msa1038610:intron 40.0%
AACGTGGACAATCACAAAAC+GGG - chr7_1:75507375-75507394 Msa1038610:intron 40.0%
ACTAGTATCTTTGCAGTTGC+AGG - chr7_1:75507471-75507490 Msa1038610:intron 40.0%
CTAGTATCTTTGCAGTTGCA+GGG - chr7_1:75507472-75507491 Msa1038610:intron 40.0%
TGTACACCACTGTAAGTTTG+TGG - chr7_1:75507599-75507618 Msa1038610:intron 40.0%
AATCCACCACAAACTTACAG+TGG + chr7_1:75507608-75507627 None:intergenic 40.0%
! GTGGATTATGGGTTTGTTTG+TGG - chr7_1:75507621-75507640 Msa1038610:intron 40.0%
! ATCACTTGTTGGGAAGATGA+AGG - chr7_1:75507839-75507858 Msa1038610:intron 40.0%
AGGAGGTCCATCAAATCTAA+TGG + chr7_1:75507894-75507913 None:intergenic 40.0%
ATAAGACCGTTGGATAAAGG+AGG + chr7_1:75507911-75507930 None:intergenic 40.0%
CCTCTCAAAAATAAGACCGT+TGG + chr7_1:75507921-75507940 None:intergenic 40.0%
!!! CCAACGGTCTTATTTTTGAG+AGG - chr7_1:75507918-75507937 Msa1038610:intron 40.0%
GTTGAACCATTCTTACGATG+AGG + chr7_1:75508258-75508277 None:intergenic 40.0%
ATCGTAAGAATGGTTCAACG+AGG - chr7_1:75508259-75508278 Msa1038610:intron 40.0%
TCGTAAGAATGGTTCAACGA+GGG - chr7_1:75508260-75508279 Msa1038610:intron 40.0%
!! TCAACGAGGGTATTCAGATA+AGG - chr7_1:75508273-75508292 Msa1038610:intron 40.0%
TTGAACCATACAATGAGCGA+TGG - chr7_1:75508703-75508722 Msa1038610:intron 40.0%
AACCTTCCATTCAACCTGTA+TGG - chr7_1:75508782-75508801 Msa1038610:intron 40.0%
! TTCCATACAGGTTGAATGGA+AGG + chr7_1:75508787-75508806 None:intergenic 40.0%
! CCTATTCCATACAGGTTGAA+TGG + chr7_1:75508791-75508810 None:intergenic 40.0%
CCATTCAACCTGTATGGAAT+AGG - chr7_1:75508788-75508807 Msa1038610:intron 40.0%
AGAATCTCCCTATTCCATAC+AGG + chr7_1:75508799-75508818 None:intergenic 40.0%
AAATGGTTGCATGTAATGCG+TGG + chr7_1:75508838-75508857 None:intergenic 40.0%
TGAAGCGATAAGATCGAATG+TGG + chr7_1:75508998-75509017 None:intergenic 40.0%
! CTAACTGCAATGCTTTTGTG+CGG + chr7_1:75509035-75509054 None:intergenic 40.0%
!! CACAAAAGCATTGCAGTTAG+AGG - chr7_1:75509035-75509054 Msa1038610:intron 40.0%
TAGAGGCAGATGAAGAGATA+CGG - chr7_1:75509052-75509071 Msa1038610:intron 40.0%
AATATCCAACAAGTGGGGAA+TGG + chr7_1:75509119-75509138 None:intergenic 40.0%
! TCCCCACTTGTTGGATATTA+CGG - chr7_1:75509120-75509139 Msa1038610:CDS 40.0%
ACCGTAATATCCAACAAGTG+GGG + chr7_1:75509124-75509143 None:intergenic 40.0%
!! CGGTAATTGTTTTGCTTACC+CGG - chr7_1:75509140-75509159 Msa1038610:CDS 40.0%
ATTAGGTTATGCTGTGGAGT+TGG - chr7_1:75509200-75509219 Msa1038610:CDS 40.0%
GCATTCTGTAGCAGATCTTA+TGG - chr7_1:75509260-75509279 Msa1038610:CDS 40.0%
TGCTTGGCAACGACACAATA+AGG - chr7_1:75505288-75505307 Msa1038610:three_prime_UTR 45.0%
CTCCGCACTGTGAACAATAA+TGG + chr7_1:75505467-75505486 None:intergenic 45.0%
CATTATTGTTCACAGTGCGG+AGG - chr7_1:75505465-75505484 Msa1038610:three_prime_UTR 45.0%
TCCCTAATCCTTCCTGCAAA+TGG + chr7_1:75505686-75505705 None:intergenic 45.0%
ATTTGCAGGAAGGATTAGGG+AGG - chr7_1:75505685-75505704 Msa1038610:three_prime_UTR 45.0%
TTTGCAGGAAGGATTAGGGA+GGG - chr7_1:75505686-75505705 Msa1038610:three_prime_UTR 45.0%
!! GATGATGGATTGTACTGGTG+AGG - chr7_1:75505724-75505743 Msa1038610:three_prime_UTR 45.0%
!! TCTTTGAAGCATGGGAATGG+GGG + chr7_1:75505812-75505831 None:intergenic 45.0%
AGAAGACCGTTGGATAAAGG+AGG - chr7_1:75507113-75507132 Msa1038610:exon 45.0%
GATGGACCTCCTTTATCCAA+CGG + chr7_1:75507902-75507921 None:intergenic 45.0%
GGTGGCGATATGAAGTTCAT+AGG + chr7_1:75507216-75507235 None:intergenic 45.0%
TGGAGGAGGAAGAAGAAAGA+AGG + chr7_1:75507280-75507299 None:intergenic 45.0%
!! AAAACGGAGGTTTGATTCGG+AGG + chr7_1:75507307-75507326 None:intergenic 45.0%
ACACCACTGTAAGTTTGTGG+TGG - chr7_1:75507602-75507621 Msa1038610:intron 45.0%
GGGGTGATGAAGTGATTTCA+CGG + chr7_1:75507783-75507802 None:intergenic 45.0%
! ACTTGTTGGGAAGATGAAGG+AGG - chr7_1:75507842-75507861 Msa1038610:intron 45.0%
GATGGACCTCCTTTATCCAA+CGG - chr7_1:75507902-75507921 Msa1038610:intron 45.0%
! GTGCATTGACGAAGGTGAAA+TGG + chr7_1:75508976-75508995 None:intergenic 45.0%
! TATGGTGGAGCTGCAAAAAG+TGG - chr7_1:75509387-75509406 Msa1038610:CDS 45.0%
! ATGGTGGAGCTGCAAAAAGT+GGG - chr7_1:75509388-75509407 Msa1038610:CDS 45.0%
ATATAGGCTGCTCCAGGAAA+AGG + chr7_1:75509420-75509439 None:intergenic 45.0%
!!! TTTTATATTTATTATATTGT+TGG + chr7_1:75506164-75506183 None:intergenic 5.0%
!!! ATGTTTAAAATTAATAAAAT+AGG + chr7_1:75507086-75507105 None:intergenic 5.0%
!! AAAAAAAATAATTAAGTTAA+GGG - chr7_1:75508030-75508049 Msa1038610:intron 5.0%
!! TGCTGGGCGTAAGTTGATGA+TGG - chr7_1:75505709-75505728 Msa1038610:three_prime_UTR 50.0%
!! TTTGATTCGGAGGTGGATGG+AGG + chr7_1:75507297-75507316 None:intergenic 50.0%
!! AGGTTTGATTCGGAGGTGGA+TGG + chr7_1:75507300-75507319 None:intergenic 50.0%
CAAGGGCCTCATCGTAAGAA+TGG - chr7_1:75508249-75508268 Msa1038610:intron 50.0%
CAGCTCCATCGCTCATTGTA+TGG + chr7_1:75508711-75508730 None:intergenic 50.0%
CATACAATGAGCGATGGAGC+TGG - chr7_1:75508709-75508728 Msa1038610:intron 50.0%
CATGAATGCCTGGGCAGAAA+TGG - chr7_1:75508744-75508763 Msa1038610:intron 50.0%
GGTTGCATGTAATGCGTGGA+GGG + chr7_1:75508834-75508853 None:intergenic 50.0%
TGGTTGCATGTAATGCGTGG+AGG + chr7_1:75508835-75508854 None:intergenic 50.0%
! CGAATGTGGTGCATTGACGA+AGG + chr7_1:75508984-75509003 None:intergenic 50.0%
GTCAACCATTCCCCACTTGT+TGG - chr7_1:75509111-75509130 Msa1038610:CDS 50.0%
!! AGTGGATTTTGGATGGGGTG+AGG - chr7_1:75509359-75509378 Msa1038610:CDS 50.0%
TGGTGGAGCTGCAAAAAGTG+GGG - chr7_1:75509389-75509408 Msa1038610:CDS 50.0%
!! GAAGGATTAGGGAGGGTGCT+GGG - chr7_1:75505693-75505712 Msa1038610:three_prime_UTR 55.0%
CCTGTATGAGTCGAATGGGG+CGG + chr7_1:75505874-75505893 None:intergenic 55.0%
GAGTGGCTCCGCCACTTAAA+AGG + chr7_1:75506406-75506425 None:intergenic 55.0%
CGGAGCCACTCACAACATGA+GGG - chr7_1:75506415-75506434 Msa1038610:intron 55.0%
TGGAGCCCTCATGTTGTGAG+TGG + chr7_1:75506423-75506442 None:intergenic 55.0%
TCATATCGCCACCACATCCC+AGG - chr7_1:75507223-75507242 Msa1038610:intron 55.0%
!! ACGGAGGTTTGATTCGGAGG+TGG + chr7_1:75507304-75507323 None:intergenic 55.0%
! TGTTCCTGCTCTGCTGCTTG+GGG + chr7_1:75507803-75507822 None:intergenic 55.0%
! CTGTTCCTGCTCTGCTGCTT+GGG + chr7_1:75507804-75507823 None:intergenic 55.0%
TCTGTTCCTGCTCTGCTGCT+TGG + chr7_1:75507805-75507824 None:intergenic 55.0%
TCTACCTCCCTTCACCACAC+CGG - chr7_1:75508225-75508244 Msa1038610:intron 55.0%
CTTACGATGAGGCCCTTGAC+CGG + chr7_1:75508247-75508266 None:intergenic 55.0%
TAGGTGACACGCCTCAAGTG+CGG - chr7_1:75508658-75508677 Msa1038610:intron 55.0%
GCATGAAACCACCGCACTTG+AGG + chr7_1:75508672-75508691 None:intergenic 55.0%
CATAGCCACGCTTCGTCTCT+TGG - chr7_1:75508948-75508967 Msa1038610:intron 55.0%
TGGAACCAAGAGACGAAGCG+TGG + chr7_1:75508956-75508975 None:intergenic 55.0%
GTTTCCACAAAGCTTCCCCG+CGG + chr7_1:75509178-75509197 None:intergenic 55.0%
! GGATTTTGGATGGGGTGAGG+CGG - chr7_1:75509362-75509381 Msa1038610:CDS 55.0%
GAGCTGCAAAAAGTGGGGCT+GGG - chr7_1:75509394-75509413 Msa1038610:CDS 55.0%
GGGATGATATAGGCTGCTCC+AGG + chr7_1:75509426-75509445 None:intergenic 55.0%
TCACGAGGAGTGGAAGCAGC+TGG + chr7_1:75505512-75505531 None:intergenic 60.0%
! GGAAGGATTAGGGAGGGTGC+TGG - chr7_1:75505692-75505711 Msa1038610:three_prime_UTR 60.0%
CCGCCCCATTCGACTCATAC+AGG - chr7_1:75505871-75505890 Msa1038610:three_prime_UTR 60.0%
GCGGAGCCACTCACAACATG+AGG - chr7_1:75506414-75506433 Msa1038610:intron 60.0%
GATTCGGAGGTGGATGGAGG+AGG + chr7_1:75507294-75507313 None:intergenic 60.0%
! GTTCCTGCTCTGCTGCTTGG+GGG + chr7_1:75507802-75507821 None:intergenic 60.0%
TTGACCGGTGTGGTGAAGGG+AGG + chr7_1:75508232-75508251 None:intergenic 60.0%
TCCCTTCACCACACCGGTCA+AGG - chr7_1:75508231-75508250 Msa1038610:intron 60.0%
CCCTTGACCGGTGTGGTGAA+GGG + chr7_1:75508235-75508254 None:intergenic 60.0%
CCCTTCACCACACCGGTCAA+GGG - chr7_1:75508232-75508251 Msa1038610:intron 60.0%
TCCTCGAGCCATTTCTGCCC+AGG + chr7_1:75508755-75508774 None:intergenic 60.0%
GCATCGTCAATGCACGCTCG+AGG - chr7_1:75509082-75509101 Msa1038610:CDS 60.0%
GGAGCTGCAAAAAGTGGGGC+TGG - chr7_1:75509393-75509412 Msa1038610:CDS 60.0%
! CTGGTGGCACCAGCTCTGGT+TGG + chr7_1:75505493-75505512 None:intergenic 65.0%
CGAGGAGTGGAAGCAGCTGG+TGG + chr7_1:75505509-75505528 None:intergenic 65.0%
TCACCCCCAAGCAGCAGAGC+AGG - chr7_1:75507796-75507815 Msa1038610:intron 65.0%
GCCCTTGACCGGTGTGGTGA+AGG + chr7_1:75508236-75508255 None:intergenic 65.0%
GATGAGGCCCTTGACCGGTG+TGG + chr7_1:75508242-75508261 None:intergenic 65.0%
GTGACACGCCTCAAGTGCGG+TGG - chr7_1:75508661-75508680 Msa1038610:intron 65.0%
GCCTGGGCAGAAATGGCTCG+AGG - chr7_1:75508751-75508770 Msa1038610:intron 65.0%
ACCACCGCGGGGAAGCTTTG+TGG - chr7_1:75509171-75509190 Msa1038610:CDS 65.0%
TCCACAAAGCTTCCCCGCGG+TGG + chr7_1:75509175-75509194 None:intergenic 65.0%
GGATGGGGTGAGGCGGTGTA+TGG - chr7_1:75509369-75509388 Msa1038610:CDS 65.0%
TGGGGTGAGGCGGTGTATGG+TGG - chr7_1:75509372-75509391 Msa1038610:CDS 65.0%
! AGTGGGGCTGGGCCTTTTCC+TGG - chr7_1:75509405-75509424 Msa1038610:CDS 65.0%
GCGGAGGAGCCAACCAGAGC+TGG - chr7_1:75505481-75505500 Msa1038610:three_prime_UTR 70.0%
GCAGCTGGTGGCACCAGCTC+TGG + chr7_1:75505497-75505516 None:intergenic 70.0%
CCGCGGTGGTGACAGCTGCC+GGG + chr7_1:75509161-75509180 None:intergenic 75.0%
CCCGGCAGCTGTCACCACCG+CGG - chr7_1:75509158-75509177 Msa1038610:CDS 75.0%
CCCGCGGTGGTGACAGCTGC+CGG + chr7_1:75509162-75509181 None:intergenic 75.0%
CCGGCAGCTGTCACCACCGC+GGG - chr7_1:75509159-75509178 Msa1038610:CDS 75.0%
CGGCAGCTGTCACCACCGCG+GGG - chr7_1:75509160-75509179 Msa1038610:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 75505114 75509843 75505114 ID=Msa1038610;Name=Msa1038610
chr7_1 mRNA 75505114 75509843 75505114 ID=Msa1038610-mRNA-1;Parent=Msa1038610;Name=Msa1038610-mRNA-1;_AED=0.33;_eAED=0.33;_QI=338|1|1|1|0.5|0.33|3|1209|169
chr7_1 exon 75505114 75506296 75505114 ID=Msa1038610-mRNA-1:exon:19307;Parent=Msa1038610-mRNA-1
chr7_1 exon 75507094 75507188 75507094 ID=Msa1038610-mRNA-1:exon:19306;Parent=Msa1038610-mRNA-1
chr7_1 exon 75509065 75509843 75509065 ID=Msa1038610-mRNA-1:exon:19305;Parent=Msa1038610-mRNA-1
chr7_1 five_prime_UTR 75509506 75509843 75509506 ID=Msa1038610-mRNA-1:five_prime_utr;Parent=Msa1038610-mRNA-1
chr7_1 CDS 75509065 75509505 75509065 ID=Msa1038610-mRNA-1:cds;Parent=Msa1038610-mRNA-1
chr7_1 CDS 75507120 75507188 75507120 ID=Msa1038610-mRNA-1:cds;Parent=Msa1038610-mRNA-1
chr7_1 three_prime_UTR 75507094 75507119 75507094 ID=Msa1038610-mRNA-1:three_prime_utr;Parent=Msa1038610-mRNA-1
chr7_1 three_prime_UTR 75505114 75506296 75505114 ID=Msa1038610-mRNA-1:three_prime_utr;Parent=Msa1038610-mRNA-1
Gene Sequence

>Msa1038610

ATGACTTCAGCACCATTATTGTTCACAGTGCGGAGGAGCCAACCAGAGCTGGTGCCACCAGCTGCTTCCACTCCTCGTGAAGTTAAACTATTATCTGACATAGATGATCAAGAAGGCTTGCGTTTCAATATTCCTATGATGTTTATCTATCGTCATGAACCGTCAATGAAAGAAAAAAACCCTATTAAAGTTCTTAGACATGCACTCTCACAAGCACTTGTGTATTACTATCCATTTGCAGGAAGGATTAGGGAGGGTGCTGGGCGTAAGTTGATGATGGATTGTACTGGTGAGGGTGTCATGTTCATTGAAGCTGAAGCTGATGTAACACTTGATCAATTTGGGGACGCTTTGCATCCCCCATTCCCATGCTTCAAAGAACTTCTATACGATGTTCCAGGATCAGAACTAATTATTGACCGCCCCATTCGACTCATACAGAATTGTTCTGGCCGTGAAATCACTTCATCACCCCCAAGCAGCAGAGCAGGAACAGATTCAGAAGATTAG
Protein sequence

>Msa1038610

MTSAPLLFTVRRSQPELVPPAASTPREVKLLSDIDDQEGLRFNIPMMFIYRHEPSMKEKNPIKVLRHALSQALVYYYPFAGRIREGAGRKLMMDCTGEGVMFIEAEADVTLDQFGDALHPPFPCFKELLYDVPGSELIIDRPIRLIQNCSGREITSSPPSSRAGTDSED*