AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0225920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225920 MtrunA17_Chr2g0292151 95.493 355 15 1 1 355 1 354 0.0 691
Msa0225920 MtrunA17_Chr2g0292111 85.915 355 50 0 1 355 1 355 0.0 632
Msa0225920 MtrunA17_Chr2g0291751 76.620 355 83 0 1 355 1 355 0.0 564
Msa0225920 MtrunA17_Chr2g0292181 73.239 355 93 1 1 355 10 362 0.0 531
Msa0225920 MtrunA17_Chr2g0292211 71.268 355 99 1 1 355 12 363 0.0 513
Msa0225920 MtrunA17_Chr2g0292241 69.859 355 107 0 1 355 1 355 0.0 512
Msa0225920 MtrunA17_Chr2g0292251 68.436 358 107 3 1 355 1 355 3.06e-172 483
Msa0225920 MtrunA17_Chr2g0292271 65.730 356 118 3 1 355 1 353 1.60e-164 463
Msa0225920 MtrunA17_Chr2g0292261 64.689 354 122 1 1 354 1 351 2.79e-162 457
Msa0225920 MtrunA17_Chr2g0292291 63.380 355 125 2 2 355 3 353 1.42e-159 451
Msa0225920 MtrunA17_Chr2g0292091 64.286 336 115 1 1 336 1 331 4.00e-158 447
Msa0225920 MtrunA17_Chr2g0292101 63.218 348 118 2 6 353 7 344 1.41e-154 438
Msa0225920 MtrunA17_Chr7g0258811 57.655 307 129 1 25 330 65 371 6.00e-122 356
Msa0225920 MtrunA17_Chr1g0175561 54.984 311 139 1 21 330 16 326 3.47e-118 345
Msa0225920 MtrunA17_Chr5g0404721 51.325 302 146 1 29 330 30 330 2.67e-105 312
Msa0225920 MtrunA17_Chr8g0372601 49.671 304 152 1 27 330 28 330 1.39e-102 305
Msa0225920 MtrunA17_Chr4g0070951 50.321 312 151 2 21 330 20 329 6.11e-102 303
Msa0225920 MtrunA17_Chr7g0244461 46.769 325 156 3 6 330 5 312 8.29e-101 300
Msa0225920 MtrunA17_Chr5g0402581 49.836 305 149 3 27 330 25 326 3.47e-97 291
Msa0225920 MtrunA17_Chr3g0129051 50.637 314 144 4 15 326 14 318 7.52e-97 290
Msa0225920 MtrunA17_Chr2g0299691 48.366 306 153 2 28 330 55 358 1.46e-96 291
Msa0225920 MtrunA17_Chr1g0155611 49.007 302 154 0 29 330 46 347 2.04e-96 290
Msa0225920 MtrunA17_Chr4g0013191 50.485 309 139 6 26 330 42 340 2.54e-96 290
Msa0225920 MtrunA17_Chr2g0320061 46.815 314 159 2 17 330 13 318 8.49e-96 287
Msa0225920 MtrunA17_Chr5g0402571 49.673 306 148 4 27 330 25 326 2.54e-95 286
Msa0225920 MtrunA17_Chr4g0013171 46.855 318 158 4 15 330 13 321 5.04e-95 285
Msa0225920 MtrunA17_Chr7g0244451 48.525 305 148 2 26 330 21 316 1.37e-94 284
Msa0225920 MtrunA17_Chr4g0068621 47.855 303 153 3 29 330 38 336 2.36e-94 284
Msa0225920 MtrunA17_Chr4g0013201 47.910 311 151 4 21 330 38 338 9.06e-94 283
Msa0225920 MtrunA17_Chr2g0320051 47.231 307 154 2 24 330 20 318 1.96e-93 281
Msa0225920 MtrunA17_Chr2g0320101 45.652 322 166 2 9 330 5 317 1.96e-93 281
Msa0225920 MtrunA17_Chr3g0106921 46.914 324 156 6 10 330 10 320 3.52e-93 281
Msa0225920 MtrunA17_Chr2g0320031 47.869 305 151 2 26 330 23 319 5.50e-93 280
Msa0225920 MtrunA17_Chr5g0432441 48.193 332 159 4 3 330 4 326 8.10e-93 280
Msa0225920 MtrunA17_Chr3g0114451 48.185 303 148 2 28 330 25 318 1.61e-92 279
Msa0225920 MtrunA17_Chr2g0320071 45.312 320 166 2 11 330 7 317 3.00e-92 278
Msa0225920 MtrunA17_Chr5g0438021 47.742 310 149 6 24 330 26 325 3.29e-92 278
Msa0225920 MtrunA17_Chr4g0038151 47.239 326 157 6 9 330 7 321 3.63e-92 278
Msa0225920 MtrunA17_Chr4g0013181 47.508 301 147 4 32 330 62 353 8.28e-91 276
Msa0225920 MtrunA17_Chr4g0038161 47.239 326 156 6 9 330 7 320 1.22e-90 274
Msa0225920 MtrunA17_Chr4g0038171 47.078 308 153 3 26 330 21 321 4.60e-90 273
Msa0225920 MtrunA17_Chr3g0129061 46.951 328 159 5 1 326 4 318 4.53e-89 270
Msa0225920 MtrunA17_Chr4g0043391 46.104 308 156 3 26 330 24 324 5.62e-89 270
Msa0225920 MtrunA17_Chr3g0129041 46.988 332 161 5 1 330 4 322 4.10e-88 268
Msa0225920 MtrunA17_Chr4g0013721 44.013 309 168 3 24 332 95 398 5.29e-88 271
Msa0225920 MtrunA17_Chr2g0292281 59.227 233 81 3 122 354 18 236 5.66e-88 265
Msa0225920 MtrunA17_Chr4g0013821 42.308 312 175 3 25 336 24 330 6.48e-87 266
Msa0225920 MtrunA17_Chr1g0213061 42.812 320 172 4 13 330 11 321 7.93e-87 265
Msa0225920 MtrunA17_Chr2g0320091 43.963 323 171 3 9 330 5 318 9.05e-87 264
Msa0225920 MtrunA17_Chr3g0106901 45.455 308 159 2 23 330 25 323 5.81e-86 262
Msa0225920 MtrunA17_Chr5g0432341 45.625 320 163 5 15 331 11 322 1.24e-85 261
Msa0225920 MtrunA17_Chr5g0400331 46.104 308 152 3 32 330 29 331 1.52e-85 261
Msa0225920 MtrunA17_Chr5g0432351 45.312 320 164 5 15 331 11 322 2.92e-85 261
Msa0225920 MtrunA17_Chr2g0279041 46.885 305 151 5 30 330 28 325 3.74e-85 260
Msa0225920 MtrunA17_Chr4g0024121 42.296 331 183 4 1 330 3 326 6.98e-83 254
Msa0225920 MtrunA17_Chr5g0432331 44.375 320 167 5 15 331 42 353 4.03e-82 254
Msa0225920 MtrunA17_Chr3g0107881 44.375 320 168 3 14 330 12 324 1.03e-80 249
Msa0225920 MtrunA17_Chr3g0128061 41.509 318 183 2 14 330 11 326 1.07e-80 249
Msa0225920 MtrunA17_Chr7g0254201 42.484 306 167 5 27 332 18 314 1.35e-80 248
Msa0225920 MtrunA17_Chr2g0296621 45.485 299 151 6 33 330 54 341 1.42e-80 249
Msa0225920 MtrunA17_Chr5g0421411 46.071 280 146 5 55 330 7 285 2.77e-80 246
Msa0225920 MtrunA17_Chr7g0224371 42.953 298 160 3 33 330 35 322 5.70e-80 247
Msa0225920 MtrunA17_Chr2g0322861 42.006 319 177 6 15 330 73 386 1.45e-79 248
Msa0225920 MtrunA17_Chr7g0268501 43.438 320 175 4 11 330 7 320 3.34e-79 245
Msa0225920 MtrunA17_Chr7g0268521 43.438 320 175 4 11 330 7 320 3.34e-79 245
Msa0225920 MtrunA17_Chr4g0076211 43.813 299 157 6 34 331 46 334 1.57e-78 244
Msa0225920 MtrunA17_Chr4g0053871 45.513 312 154 8 21 326 19 320 2.51e-77 240
Msa0225920 MtrunA17_Chr4g0063671 41.562 320 175 5 16 330 8 320 7.85e-77 239
Msa0225920 MtrunA17_Chr8g0371381 40.065 307 176 4 24 330 21 319 1.71e-76 238
Msa0225920 MtrunA17_Chr1g0194151 39.091 330 195 4 5 330 6 333 1.14e-75 236
Msa0225920 MtrunA17_Chr5g0405991 40.566 318 177 8 14 330 10 316 1.18e-75 236
Msa0225920 MtrunA17_Chr1g0157051 41.528 301 169 4 29 329 24 317 1.47e-75 236
Msa0225920 MtrunA17_Chr5g0401431 39.339 333 193 6 1 329 1 328 1.56e-75 236
Msa0225920 MtrunA17_Chr7g0225221 40.841 333 181 8 1 330 1 320 3.12e-74 232
Msa0225920 MtrunA17_Chr4g0046131 43.279 305 166 5 28 327 41 343 3.35e-74 233
Msa0225920 MtrunA17_Chr1g0194271 37.982 337 196 3 5 330 6 340 3.90e-74 233
Msa0225920 MtrunA17_Chr1g0148021 42.020 307 170 6 28 330 26 328 6.04e-74 232
Msa0225920 MtrunA17_Chr6g0467251 43.648 307 160 6 32 336 39 334 2.47e-73 231
Msa0225920 MtrunA17_Chr1g0204011 40.196 306 177 4 25 330 23 322 1.58e-72 228
Msa0225920 MtrunA17_Chr1g0164891 41.914 303 168 6 33 330 93 392 2.37e-71 227
Msa0225920 MtrunA17_Chr4g0075241 39.394 330 192 5 4 330 3 327 1.41e-70 223
Msa0225920 MtrunA17_Chr6g0460711 39.748 317 182 6 14 330 7 314 1.47e-70 223
Msa0225920 MtrunA17_Chr2g0278671 39.871 311 175 6 25 330 20 323 7.27e-70 221
Msa0225920 MtrunA17_Chr7g0254231 39.474 304 168 6 29 330 22 311 7.82e-70 221
Msa0225920 MtrunA17_Chr6g0467161 41.066 319 164 7 17 332 41 338 2.72e-69 220
Msa0225920 MtrunA17_Chr1g0188431 40.264 303 166 7 29 330 39 327 3.04e-69 219
Msa0225920 MtrunA17_Chr6g0467121 41.956 317 168 8 33 348 78 379 3.94e-69 221
Msa0225920 MtrunA17_Chr4g0072091 40.924 303 169 6 28 326 23 319 1.53e-67 215
Msa0225920 MtrunA17_Chr2g0279061 47.710 262 126 5 73 330 12 266 1.59e-67 213
Msa0225920 MtrunA17_Chr6g0477071 37.003 327 187 6 4 330 35 342 5.68e-67 214
Msa0225920 MtrunA17_Chr5g0432401 39.286 308 137 4 25 329 25 285 4.85e-65 207
Msa0225920 MtrunA17_Chr5g0413051 39.032 310 180 6 27 330 71 377 4.16e-64 208
Msa0225920 MtrunA17_Chr1g0197411 38.291 316 187 7 21 331 19 331 2.68e-63 204
Msa0225920 MtrunA17_Chr3g0136751 39.355 310 178 4 24 330 20 322 1.24e-62 202
Msa0225920 MtrunA17_Chr6g0451571 38.387 310 182 6 25 330 30 334 1.50e-61 200
Msa0225920 MtrunA17_Chr2g0329641 36.246 309 185 5 28 331 35 336 5.54e-61 199
Msa0225920 MtrunA17_Chr8g0364291 37.097 310 187 4 25 330 19 324 3.65e-60 196
Msa0225920 MtrunA17_Chr2g0316791 35.795 352 185 9 14 327 55 403 5.08e-60 198
Msa0225920 MtrunA17_Chr2g0316481 35.795 352 185 9 14 327 55 403 1.92e-59 197
Msa0225920 MtrunA17_Chr2g0316831 35.511 352 186 9 14 327 91 439 6.27e-58 194
Msa0225920 MtrunA17_Chr2g0316191 34.278 353 190 8 14 327 55 404 2.50e-57 191
Msa0225920 MtrunA17_Chr4g0074851 36.808 307 183 4 32 335 35 333 4.26e-57 189
Msa0225920 MtrunA17_Chr1g0181431 35.179 307 188 4 27 330 25 323 1.16e-56 187
Msa0225920 MtrunA17_Chr1g0181511 35.179 307 188 4 27 330 25 323 1.78e-56 187
Msa0225920 MtrunA17_Chr2g0311251 35.821 335 179 8 27 329 9 339 7.23e-56 186
Msa0225920 MtrunA17_Chr1g0181481 35.179 307 188 4 27 330 25 323 5.02e-55 183
Msa0225920 MtrunA17_Chr2g0311241 31.915 376 179 7 27 329 58 429 5.42e-53 181
Msa0225920 MtrunA17_Chr3g0114461 46.597 191 94 2 140 330 10 192 2.29e-50 166
Msa0225920 MtrunA17_Chr2g0316811 37.302 252 134 5 14 242 29 279 1.13e-42 151
Msa0225920 MtrunA17_Chr4g0004591 30.422 332 153 5 26 329 74 355 3.75e-42 150
Msa0225920 MtrunA17_Chr3g0114491 54.286 105 48 0 28 132 17 121 1.22e-32 119
Msa0225920 MtrunA17_Chr2g0316141 30.769 286 144 8 75 327 11 275 2.88e-31 119
Msa0225920 MtrunA17_Chr2g0316181 30.769 286 144 8 75 327 11 275 2.88e-31 119
Msa0225920 MtrunA17_Chr1g0181501 34.536 194 116 4 140 330 4 189 1.47e-28 109
Msa0225920 MtrunA17_Chr5g0432321 45.161 124 60 2 150 273 17 132 8.21e-26 100
Msa0225920 MtrunA17_Chr3g0104101 38.028 142 83 5 193 330 9 149 2.55e-20 86.3
Msa0225920 MtrunA17_Chr2g0316771 28.729 181 97 3 179 329 7 185 2.81e-20 87.4
Msa0225920 MtrunA17_Chr7g0254181 37.600 125 73 3 72 195 2 122 1.66e-16 75.9
Msa0225920 MtrunA17_Chr6g0468731 56.338 71 27 2 68 138 22 88 2.20e-16 73.6
Msa0225920 MtrunA17_Chr3g0124821 26.236 263 156 7 63 314 121 356 3.08e-16 79.3
Msa0225920 MtrunA17_Chr4g0013811 48.649 74 38 0 139 212 5 78 7.56e-16 72.0
Msa0225920 MtrunA17_Chr1g0181491 38.679 106 63 2 27 132 10 113 8.30e-16 73.9
Msa0225920 MtrunA17_Chr3g0137751 27.451 255 139 8 61 314 106 315 1.15e-14 73.9
Msa0225920 MtrunA17_Chr5g0432361 39.773 88 52 1 242 329 22 108 3.59e-14 68.2
Msa0225920 MtrunA17_Chr1g0196191 53.623 69 29 2 71 137 27 94 1.78e-11 62.0
Msa0225920 MtrunA17_Chr7g0268491 43.902 82 43 2 249 330 19 97 1.99e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225920 AT2G38380.1 58.576 309 127 1 25 332 27 335 8.77e-134 385
Msa0225920 AT2G38390.1 56.634 309 133 1 25 332 27 335 8.05e-130 375
Msa0225920 AT5G06720.1 54.259 317 145 0 14 330 17 333 3.87e-123 358
Msa0225920 AT4G08780.1 54.114 316 143 2 25 338 20 335 2.10e-121 354
Msa0225920 AT4G08770.1 54.375 320 144 2 25 342 20 339 1.09e-120 352
Msa0225920 AT5G06730.1 51.235 324 158 0 14 337 18 341 1.97e-119 349
Msa0225920 AT3G32980.1 52.252 333 150 3 25 355 27 352 3.01e-117 343
Msa0225920 AT3G49120.1 51.652 333 152 3 25 355 28 353 5.81e-115 338
Msa0225920 AT3G49110.1 51.652 333 152 3 25 355 29 354 5.54e-114 335
Msa0225920 AT5G19880.1 50.938 320 149 5 15 330 14 329 1.92e-109 323
Msa0225920 AT5G66390.1 47.561 328 167 2 3 330 11 333 7.22e-103 306
Msa0225920 AT4G36430.1 46.875 320 162 2 11 330 19 330 7.90e-102 303
Msa0225920 AT2G18140.1 46.645 313 162 2 18 330 28 335 9.84e-101 301
Msa0225920 AT1G44970.1 49.196 311 156 1 20 330 38 346 2.29e-99 298
Msa0225920 AT2G18150.1 46.689 302 160 1 29 330 36 336 2.95e-99 297
Msa0225920 AT1G14550.1 49.180 305 147 3 27 330 24 321 5.00e-98 293
Msa0225920 AT5G19890.1 50.654 306 143 4 27 330 28 327 3.61e-96 289
Msa0225920 AT3G50990.1 46.753 308 163 1 24 331 36 342 5.70e-94 284
Msa0225920 AT1G49570.1 46.795 312 159 4 20 328 41 348 1.62e-93 283
Msa0225920 AT5G05340.1 48.039 306 148 4 27 330 28 324 7.17e-93 280
Msa0225920 AT1G14540.1 47.319 317 160 3 14 330 6 315 5.08e-91 275
Msa0225920 AT4G16270.1 47.667 300 150 5 33 330 54 348 1.75e-89 273
Msa0225920 AT5G64120.1 44.910 334 171 7 1 330 4 328 1.85e-87 267
Msa0225920 AT5G58400.1 45.752 306 154 5 25 327 26 322 2.66e-87 266
Msa0225920 AT4G37530.1 46.452 310 159 5 25 330 23 329 3.33e-87 266
Msa0225920 AT1G68850.1 44.951 307 163 6 29 330 30 335 1.80e-85 262
Msa0225920 AT2G35380.1 47.682 302 154 3 33 330 34 335 7.19e-85 260
Msa0225920 AT2G22420.1 42.763 304 169 3 29 332 23 321 1.86e-84 259
Msa0225920 AT5G17820.1 40.379 317 176 6 14 330 10 313 2.62e-83 256
Msa0225920 AT5G58390.1 45.246 305 155 5 25 326 17 312 2.81e-83 256
Msa0225920 AT5G17820.2 40.379 317 176 6 14 330 63 366 4.22e-82 254
Msa0225920 AT1G71695.1 46.753 308 152 6 29 333 44 342 8.78e-82 253
Msa0225920 AT4G37520.1 44.156 308 165 5 27 330 25 329 4.29e-80 248
Msa0225920 AT3G03670.1 41.118 304 176 2 27 330 21 321 1.06e-79 247
Msa0225920 AT4G25980.1 41.411 326 176 6 10 330 11 326 3.59e-79 246
Msa0225920 AT4G37520.2 43.831 308 163 6 27 330 25 326 5.19e-79 245
Msa0225920 AT2G41480.1 43.974 307 160 5 29 330 29 328 7.31e-78 242
Msa0225920 AT3G21770.1 41.290 310 176 5 20 327 20 325 1.17e-77 242
Msa0225920 AT5G67400.1 41.401 314 177 5 21 330 19 329 1.64e-77 241
Msa0225920 AT5G39580.1 42.771 332 172 8 1 330 4 319 3.97e-77 240
Msa0225920 AT4G11290.1 39.818 329 193 4 4 330 1 326 9.01e-77 239
Msa0225920 AT1G05260.1 40.060 332 190 6 1 330 1 325 3.44e-76 238
Msa0225920 AT3G49960.1 40.729 329 185 6 6 330 7 329 6.19e-76 237
Msa0225920 AT4G30170.1 42.581 310 165 7 26 330 24 325 1.27e-75 236
Msa0225920 AT2G18980.1 43.492 315 163 8 23 330 17 323 2.01e-75 236
Msa0225920 AT5G64110.1 44.079 304 159 5 30 330 35 330 3.36e-75 235
Msa0225920 AT5G42180.1 41.176 323 180 7 8 329 3 316 4.69e-75 234
Msa0225920 AT4G37530.2 47.674 258 130 4 25 278 23 279 5.41e-75 233
Msa0225920 AT5G14130.1 42.500 320 171 8 18 330 17 330 9.44e-74 232
Msa0225920 AT1G05240.1 39.542 306 169 6 32 330 29 325 1.73e-73 231
Msa0225920 AT1G05250.1 39.542 306 169 6 32 330 29 325 1.73e-73 231
Msa0225920 AT5G14130.2 42.500 320 171 8 18 330 58 371 1.92e-73 232
Msa0225920 AT5G51890.1 38.111 307 183 5 25 330 22 322 2.14e-71 225
Msa0225920 AT1G30870.1 41.311 305 166 6 32 333 54 348 2.22e-71 226
Msa0225920 AT5G64100.1 42.384 302 159 7 33 330 41 331 6.35e-71 224
Msa0225920 AT3G01190.1 40.065 307 177 6 25 330 21 321 1.73e-69 221
Msa0225920 AT5G15180.1 38.436 307 184 5 25 330 27 329 8.04e-69 219
Msa0225920 AT4G26010.1 36.728 324 185 7 10 330 3 309 1.51e-67 215
Msa0225920 AT4G26010.2 36.728 324 185 7 10 330 31 337 2.52e-67 216
Msa0225920 AT2G39040.1 41.667 312 169 7 27 330 44 350 4.79e-67 215
Msa0225920 AT4G33870.1 34.118 340 180 6 26 327 65 398 1.34e-66 216
Msa0225920 AT2G34060.1 40.584 308 174 6 26 327 39 343 9.63e-66 212
Msa0225920 AT5G40150.1 37.658 316 186 5 18 330 21 328 2.47e-65 210
Msa0225920 AT4G33420.1 40.064 312 171 8 20 330 29 325 1.57e-64 208
Msa0225920 AT4G33420.2 40.064 312 171 8 20 330 76 372 4.23e-64 208
Msa0225920 AT1G77100.1 37.500 328 193 6 6 330 1 319 1.22e-63 205
Msa0225920 AT2G35380.2 47.347 245 125 3 90 330 3 247 1.24e-63 203
Msa0225920 AT3G28200.1 37.097 310 183 5 24 330 16 316 1.54e-63 205
Msa0225920 AT4G31760.1 36.677 319 192 4 15 330 15 326 1.95e-63 205
Msa0225920 AT5G22410.1 36.808 307 176 10 27 326 26 321 6.44e-62 201
Msa0225920 AT1G34510.1 37.888 322 184 6 10 330 3 309 6.91e-62 201
Msa0225920 AT2G43480.1 37.458 299 174 5 37 330 45 335 1.20e-61 201
Msa0225920 AT2G24800.1 38.636 308 178 5 27 330 29 329 3.73e-61 199
Msa0225920 AT4G17690.1 37.908 306 179 5 29 331 26 323 1.10e-59 195
Msa0225920 AT3G17070.1 36.254 331 197 8 6 330 17 339 1.53e-59 195
Msa0225920 AT5G24070.1 34.431 334 204 7 4 330 10 335 1.75e-59 195
Msa0225920 AT1G24110.1 36.842 323 195 6 11 330 6 322 2.99e-59 194
Msa0225920 AT5G47000.1 35.294 323 198 6 11 330 16 330 4.59e-58 191
Msa0225920 AT4G21960.1 34.911 338 203 7 1 331 1 328 5.53e-57 188
Msa0225920 AT2G37130.1 35.922 309 186 5 26 330 27 327 4.14e-56 186
Msa0225920 AT2G37130.2 35.974 303 182 5 32 330 2 296 4.32e-55 182
Msa0225920 AT3G17070.2 36.466 266 156 8 71 330 18 276 7.25e-44 153
Msa0225920 AT4G25980.2 42.781 187 99 4 10 196 56 234 4.73e-41 145
Msa0225920 AT5G39580.2 39.286 224 117 5 1 217 4 215 4.66e-40 142
Msa0225920 AT2G24800.2 39.881 168 97 1 27 194 29 192 1.22e-31 119
Msa0225920 AT1G77490.2 26.236 263 156 9 63 314 106 341 5.17e-16 79.3
Msa0225920 AT1G77490.1 26.236 263 156 9 63 314 106 341 8.45e-16 78.6
Msa0225920 AT4G32320.1 28.906 256 132 9 61 313 115 323 1.49e-15 77.0
Msa0225920 AT3G42570.1 37.037 108 66 2 90 196 43 149 2.11e-13 67.4
Msa0225920 AT4G08390.2 25.651 269 150 11 63 314 127 362 2.25e-12 67.8
Msa0225920 AT4G08390.5 25.651 269 150 11 63 314 127 362 2.25e-12 67.8
Msa0225920 AT4G08390.1 25.651 269 150 11 63 314 127 362 2.25e-12 67.8
Msa0225920 AT4G08390.3 25.651 269 150 11 63 314 126 361 2.62e-12 67.8
Msa0225920 AT4G35970.2 29.442 197 116 6 47 233 8 191 6.22e-11 62.0

Find 89 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAATTCAATGATTAAAA+TGG 0.110406 2_1:+76302812 Msa0225920:CDS
CAACAATCTTCAAGGTAAAA+AGG 0.173562 2_1:+76302686 Msa0225920:CDS
TCTAATTTCTCCTTTCTTTC+CGG 0.185886 2_1:-76302853 None:intergenic
TTGCAATTGGGGACAAGTTT+TGG 0.267428 2_1:-76301084 None:intergenic
ATGATTAAAATGGGTAATAT+TGG 0.268702 2_1:+76302822 Msa0225920:CDS
GAAAATGTGTCTTTATTTAT+AGG 0.273239 2_1:-76300911 None:intergenic
AGTTCTGGAAGAAAACATTT+TGG 0.286167 2_1:-76302788 None:intergenic
TCAGCACAAGAAACTTTATT+AGG 0.299828 2_1:-76301501 None:intergenic
TGTAAATTCCTTAAGAAGAT+TGG 0.302542 2_1:+76301437 Msa0225920:CDS
TAACAAGAAATCTTCTGAAT+TGG 0.304436 2_1:+76302893 Msa0225920:CDS
TGAGGTTGCTGTGGTTGATT+AGG 0.306009 2_1:-76300937 None:intergenic
TAGTTCTTGTCTAATTTATC+AGG 0.314728 2_1:-76302660 None:intergenic
GGTAATATTGGCGTGCTTAC+CGG 0.320336 2_1:+76302834 Msa0225920:CDS
GAAATACAATAGATTGCAAT+TGG 0.322953 2_1:-76301097 None:intergenic
AGAATCAATGGATGGGGATA+TGG 0.327036 2_1:+76302938 Msa0225920:CDS
CTTCTTAAGGAATTTACATT+TGG 0.341572 2_1:-76301432 None:intergenic
ATTTCAGGTGCCCATACATT+AGG 0.348143 2_1:+76302480 Msa0225920:intron
AAAGTTGTTGACAATGCTAA+TGG 0.353968 2_1:-76302757 None:intergenic
TCATTGAATTTATAAAGTTC+TGG 0.362635 2_1:-76302803 None:intergenic
GATAACATCCAATCTTCTTA+AGG 0.365927 2_1:-76301445 None:intergenic
AAATTGACAACGTTATTTCC+AGG 0.373794 2_1:-76302624 None:intergenic
ATTAGCATTGTCAACAACTT+TGG 0.377288 2_1:+76302759 Msa0225920:CDS
TGCTGTGTAGTAGTTGTGTT+TGG 0.394905 2_1:+76301014 Msa0225920:CDS
TTTAGTTGAAATGTGGTGAT+TGG 0.398883 2_1:+76302990 Msa0225920:three_prime_UTR
AACGTGCTCTTCCTAATGTA+TGG 0.403932 2_1:-76302491 None:intergenic
TCTAATTTATCAGGAGTTGT+TGG 0.406098 2_1:-76302651 None:intergenic
TCCAGGTTGGATCGTTCCAT+TGG 0.412490 2_1:+76301705 Msa0225920:CDS
CTTGCCAATCAAAATCTTCC+AGG 0.414340 2_1:+76301760 Msa0225920:CDS
TTATACGACTTCGACAATAC+TGG 0.424284 2_1:+76302534 Msa0225920:CDS
AAATACAATAGATTGCAATT+GGG 0.425537 2_1:-76301096 None:intergenic
AACTACTACAACAATCTTCA+AGG 0.429163 2_1:+76302678 Msa0225920:CDS
ATAAATTCAATGATTAAAAT+GGG 0.430148 2_1:+76302813 Msa0225920:CDS
AGTTGATCTAAACTGAAGTT+GGG 0.446411 2_1:-76301784 None:intergenic
TACCAAGCTATATGATATTG+AGG 0.449135 2_1:-76300955 None:intergenic
GAGCTGTTGCTATGAGACTA+AGG 0.449394 2_1:-76300989 None:intergenic
AGCTGGAGTATCTTCTGTTC+TGG 0.449716 2_1:+76301539 Msa0225920:CDS
CACCACCTATAGTCATGTTA+TGG 0.452010 2_1:+76300888 Msa0225920:five_prime_UTR
GAGGTTGCTGTGGTTGATTA+GGG 0.452762 2_1:-76300936 None:intergenic
AAGTTGATCTAAACTGAAGT+TGG 0.456582 2_1:-76301785 None:intergenic
GGATCGTTCCATTGGGAAGA+AGG 0.456683 2_1:+76301713 Msa0225920:CDS
TGGACGAAGTTGTGCATTTG+AGG 0.456696 2_1:-76301051 None:intergenic
GTTGATCTTGTAGCACTCTC+AGG 0.464144 2_1:+76301841 Msa0225920:CDS
TGTGGCCTCTTCAGAATCAA+TGG 0.473348 2_1:+76302926 Msa0225920:CDS
CCAGGTTGGATCGTTCCATT+GGG 0.475791 2_1:+76301706 Msa0225920:CDS
ATAGGCCATAACATGACTAT+AGG 0.479240 2_1:-76300893 None:intergenic
GTTGGGTCAAGAGTTGGATC+AGG 0.485351 2_1:-76302561 None:intergenic
GATATTCTCACACTTGCAGC+TGG 0.486631 2_1:+76301522 Msa0225920:CDS
GAATGCCTGCGAGTATCATC+AGG 0.492455 2_1:+76301153 Msa0225920:CDS
AATAAAGAGAAGTGCTAGCT+AGG 0.493123 2_1:+76303021 Msa0225920:three_prime_UTR
AAGTATGTTGGGTCAAGAGT+TGG 0.500202 2_1:-76302567 None:intergenic
AACCTCAATATCATATAGCT+TGG 0.505657 2_1:+76300953 Msa0225920:five_prime_UTR
ATAATCGATCAAGTATGAAA+AGG 0.516016 2_1:-76302515 None:intergenic
CCCAATGGAACGATCCAACC+TGG 0.520261 2_1:-76301706 None:intergenic
AATACAATAGATTGCAATTG+GGG 0.523282 2_1:-76301095 None:intergenic
CAATGTCCTCAAAATGGACC+TGG 0.526827 2_1:+76302606 Msa0225920:CDS
GCCTCTTCAGAATCAATGGA+TGG 0.527317 2_1:+76302930 Msa0225920:CDS
GGCGTGCTTACCGGAAAGAA+AGG 0.528185 2_1:+76302843 Msa0225920:CDS
TGTATTTCAAATCTTAGAGA+AGG 0.529827 2_1:+76301112 Msa0225920:CDS
ATTAAAAGTGAACAAGATGC+TGG 0.530966 2_1:+76301408 Msa0225920:CDS
AAGTTGTGCATTTGAGGAGA+AGG 0.531405 2_1:-76301045 None:intergenic
TGTGTAGTAGTTGTGTTTGG+AGG 0.538078 2_1:+76301017 Msa0225920:CDS
TAGTTCAATCTAAATGAATG+TGG 0.538504 2_1:+76302962 Msa0225920:exon
CAAGAATTGTTCTCAACACC+GGG 0.545895 2_1:+76302726 Msa0225920:CDS
AGACTATCCCTTCTTCCCAA+TGG 0.549067 2_1:-76301721 None:intergenic
CTCTTCAGAATCAATGGATG+GGG 0.554891 2_1:+76302932 Msa0225920:CDS
AGCACATAACATACACATCA+TGG 0.555045 2_1:-76303054 None:intergenic
CCTCTTCAGAATCAATGGAT+GGG 0.557831 2_1:+76302931 Msa0225920:CDS
ACGTGCTCTTCCTAATGTAT+GGG 0.564473 2_1:-76302490 None:intergenic
AGTTCAATCTAAATGAATGT+GGG 0.569217 2_1:+76302963 Msa0225920:exon
TCTAAACTGAAGTTGGGACC+TGG 0.569967 2_1:-76301778 None:intergenic
TGACTATAGGTGGTGGCTTG+TGG 0.570670 2_1:-76300880 None:intergenic
TCAAGAATTGTTCTCAACAC+CGG 0.581146 2_1:+76302725 Msa0225920:CDS
CCCATCCATTGATTCTGAAG+AGG 0.588983 2_1:-76302931 None:intergenic
TGAATTGGATCTTGCCACTG+TGG 0.589040 2_1:+76302908 Msa0225920:CDS
AGTTGTGCATTTGAGGAGAA+GGG 0.593995 2_1:-76301044 None:intergenic
TGCTGATCAAGGACTCAACA+CGG 0.603854 2_1:+76301819 Msa0225920:CDS
CAATCAGATTAAGACTGAGG+TGG 0.605649 2_1:+76301467 Msa0225920:CDS
GGGTTACTTTAGTTGAAATG+TGG 0.607486 2_1:+76302983 Msa0225920:three_prime_UTR
CATAACATGACTATAGGTGG+TGG 0.613116 2_1:-76300887 None:intergenic
ATAACTTGCGACTGAAAGAG+AGG 0.614087 2_1:-76303128 None:intergenic
TGAAGCCTGATGATACTCGC+AGG 0.615935 2_1:-76301158 None:intergenic
GATCGTTCCATTGGGAAGAA+GGG 0.616463 2_1:+76301714 Msa0225920:CDS
GGCCATAACATGACTATAGG+TGG 0.619777 2_1:-76300890 None:intergenic
ATGCTAATGGTATCTGCACC+CGG 0.620520 2_1:-76302744 None:intergenic
AGCTGTTGCTATGAGACTAA+GGG 0.621943 2_1:-76300988 None:intergenic
ATATGATATTGAGGTTGCTG+TGG 0.641081 2_1:-76300946 None:intergenic
TATCAATCAGATTAAGACTG+AGG 0.664008 2_1:+76301464 Msa0225920:CDS
TATGTATATTCACAGAGTGG+GGG 0.680063 2_1:+76301682 Msa0225920:intron
TGATTCTGAAGAGGCCACAG+TGG 0.697720 2_1:-76302922 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATTATTATTATATT+AGG - chr2_1:76301889-76301908 None:intergenic 0.0%
!!! ATTTTTATTATTATTATATT+AGG - chr2_1:76301889-76301908 None:intergenic 0.0%
!! GTAAAATTACTAAAAATAAT+TGG - chr2_1:76301580-76301599 None:intergenic 10.0%
!! ATATCATAATATCATAATAA+TGG + chr2_1:76301603-76301622 Msa0225920:intron 10.0%
!!! TCTTTTATTTATTTATTGTA+TGG + chr2_1:76301637-76301656 Msa0225920:intron 10.0%
!! ATTATTATTATATTAGGAAT+TGG - chr2_1:76301883-76301902 None:intergenic 10.0%
!!! TCTTATTTATGTAAAAATTA+AGG - chr2_1:76301959-76301978 None:intergenic 10.0%
!! TATAAATTCAATGATTAAAA+TGG + chr2_1:76302812-76302831 Msa0225920:CDS 10.0%
!! ATAAATTCAATGATTAAAAT+GGG + chr2_1:76302813-76302832 Msa0225920:CDS 10.0%
!! AAAATTACTTAGAAAAAAAA+AGG - chr2_1:76303097-76303116 None:intergenic 10.0%
!! GTAAAATTACTAAAAATAAT+TGG - chr2_1:76301580-76301599 None:intergenic 10.0%
!! ATATCATAATATCATAATAA+TGG + chr2_1:76301603-76301622 Msa0225920:intron 10.0%
!!! TCTTTTATTTATTTATTGTA+TGG + chr2_1:76301637-76301656 Msa0225920:intron 10.0%
!! ATTATTATTATATTAGGAAT+TGG - chr2_1:76301883-76301902 None:intergenic 10.0%
!!! TCTTATTTATGTAAAAATTA+AGG - chr2_1:76301959-76301978 None:intergenic 10.0%
!! TATAAATTCAATGATTAAAA+TGG + chr2_1:76302812-76302831 Msa0225920:CDS 10.0%
!! ATAAATTCAATGATTAAAAT+GGG + chr2_1:76302813-76302832 Msa0225920:CDS 10.0%
!! AAAATTACTTAGAAAAAAAA+AGG - chr2_1:76303097-76303116 None:intergenic 10.0%
!! ACGAAAAAATTATTAACTTT+CGG - chr2_1:76301263-76301282 None:intergenic 15.0%
!!! TTTAAATTTTAATAACGCTA+TGG - chr2_1:76302007-76302026 None:intergenic 15.0%
!! ACGAAAAAATTATTAACTTT+CGG - chr2_1:76301263-76301282 None:intergenic 15.0%
!!! TTTAAATTTTAATAACGCTA+TGG - chr2_1:76302007-76302026 None:intergenic 15.0%
!!! GAAAATGTGTCTTTATTTAT+AGG - chr2_1:76300914-76300933 None:intergenic 20.0%
!! AAATACAATAGATTGCAATT+GGG - chr2_1:76301099-76301118 None:intergenic 20.0%
!!! ATAATATGACATTTTTGAGA+GGG + chr2_1:76301301-76301320 Msa0225920:intron 20.0%
!!! TTGATTGATGATATTATTCA+TGG + chr2_1:76301337-76301356 Msa0225920:intron 20.0%
!!! ATATTATTCATGGTTTTAAC+AGG + chr2_1:76301347-76301366 Msa0225920:intron 20.0%
!!! TATTATTCATGGTTTTAACA+GGG + chr2_1:76301348-76301367 Msa0225920:intron 20.0%
!!! TGCAATTTGTCTTTTTTTAT+TGG - chr2_1:76302196-76302215 None:intergenic 20.0%
!! TAAAAAAAGACAAATTGCAT+CGG + chr2_1:76302197-76302216 Msa0225920:intron 20.0%
!! TCATTGAATTTATAAAGTTC+TGG - chr2_1:76302806-76302825 None:intergenic 20.0%
!! ATGATTAAAATGGGTAATAT+TGG + chr2_1:76302822-76302841 Msa0225920:CDS 20.0%
!!! GAAAATGTGTCTTTATTTAT+AGG - chr2_1:76300914-76300933 None:intergenic 20.0%
!! AAATACAATAGATTGCAATT+GGG - chr2_1:76301099-76301118 None:intergenic 20.0%
!!! ATAATATGACATTTTTGAGA+GGG + chr2_1:76301301-76301320 Msa0225920:intron 20.0%
!!! TTGATTGATGATATTATTCA+TGG + chr2_1:76301337-76301356 Msa0225920:intron 20.0%
!!! ATATTATTCATGGTTTTAAC+AGG + chr2_1:76301347-76301366 Msa0225920:intron 20.0%
!!! TATTATTCATGGTTTTAACA+GGG + chr2_1:76301348-76301367 Msa0225920:intron 20.0%
!!! TGCAATTTGTCTTTTTTTAT+TGG - chr2_1:76302196-76302215 None:intergenic 20.0%
!! TAAAAAAAGACAAATTGCAT+CGG + chr2_1:76302197-76302216 Msa0225920:intron 20.0%
!! TCATTGAATTTATAAAGTTC+TGG - chr2_1:76302806-76302825 None:intergenic 20.0%
!! ATGATTAAAATGGGTAATAT+TGG + chr2_1:76302822-76302841 Msa0225920:CDS 20.0%
! AATACAATAGATTGCAATTG+GGG - chr2_1:76301098-76301117 None:intergenic 25.0%
! GAAATACAATAGATTGCAAT+TGG - chr2_1:76301100-76301119 None:intergenic 25.0%
! TGTATTTCAAATCTTAGAGA+AGG + chr2_1:76301112-76301131 Msa0225920:CDS 25.0%
!!! CATAATATGACATTTTTGAG+AGG + chr2_1:76301300-76301319 Msa0225920:intron 25.0%
! CTTCTTAAGGAATTTACATT+TGG - chr2_1:76301435-76301454 None:intergenic 25.0%
! TGTAAATTCCTTAAGAAGAT+TGG + chr2_1:76301437-76301456 Msa0225920:CDS 25.0%
! CAAGTTAGTTCAAAATCAAA+TGG - chr2_1:76302151-76302170 None:intergenic 25.0%
! TTACAAAGAAATCATCTCAA+CGG - chr2_1:76302220-76302239 None:intergenic 25.0%
! AAAGTAAGTAAATCTTGATG+AGG + chr2_1:76302330-76302349 Msa0225920:intron 25.0%
! ATAATCGATCAAGTATGAAA+AGG - chr2_1:76302518-76302537 None:intergenic 25.0%
! TAGTTCTTGTCTAATTTATC+AGG - chr2_1:76302663-76302682 None:intergenic 25.0%
! AACAATCTTCAAGGTAAAAA+GGG + chr2_1:76302687-76302706 Msa0225920:CDS 25.0%
! TAACAAGAAATCTTCTGAAT+TGG + chr2_1:76302893-76302912 Msa0225920:CDS 25.0%
! TAGTTCAATCTAAATGAATG+TGG + chr2_1:76302962-76302981 Msa0225920:exon 25.0%
! AGTTCAATCTAAATGAATGT+GGG + chr2_1:76302963-76302982 Msa0225920:exon 25.0%
! AATACAATAGATTGCAATTG+GGG - chr2_1:76301098-76301117 None:intergenic 25.0%
! GAAATACAATAGATTGCAAT+TGG - chr2_1:76301100-76301119 None:intergenic 25.0%
! TGTATTTCAAATCTTAGAGA+AGG + chr2_1:76301112-76301131 Msa0225920:CDS 25.0%
!!! CATAATATGACATTTTTGAG+AGG + chr2_1:76301300-76301319 Msa0225920:intron 25.0%
! CTTCTTAAGGAATTTACATT+TGG - chr2_1:76301435-76301454 None:intergenic 25.0%
! TGTAAATTCCTTAAGAAGAT+TGG + chr2_1:76301437-76301456 Msa0225920:CDS 25.0%
! CAAGTTAGTTCAAAATCAAA+TGG - chr2_1:76302151-76302170 None:intergenic 25.0%
! TTACAAAGAAATCATCTCAA+CGG - chr2_1:76302220-76302239 None:intergenic 25.0%
! AAAGTAAGTAAATCTTGATG+AGG + chr2_1:76302330-76302349 Msa0225920:intron 25.0%
! ATAATCGATCAAGTATGAAA+AGG - chr2_1:76302518-76302537 None:intergenic 25.0%
! TAGTTCTTGTCTAATTTATC+AGG - chr2_1:76302663-76302682 None:intergenic 25.0%
! AACAATCTTCAAGGTAAAAA+GGG + chr2_1:76302687-76302706 Msa0225920:CDS 25.0%
! TAACAAGAAATCTTCTGAAT+TGG + chr2_1:76302893-76302912 Msa0225920:CDS 25.0%
! TAGTTCAATCTAAATGAATG+TGG + chr2_1:76302962-76302981 Msa0225920:exon 25.0%
! AGTTCAATCTAAATGAATGT+GGG + chr2_1:76302963-76302982 Msa0225920:exon 25.0%
AACCTCAATATCATATAGCT+TGG + chr2_1:76300953-76300972 Msa0225920:five_prime_UTR 30.0%
TACCAAGCTATATGATATTG+AGG - chr2_1:76300958-76300977 None:intergenic 30.0%
ATTAAAAGTGAACAAGATGC+TGG + chr2_1:76301408-76301427 Msa0225920:CDS 30.0%
GATAACATCCAATCTTCTTA+AGG - chr2_1:76301448-76301467 None:intergenic 30.0%
TATCAATCAGATTAAGACTG+AGG + chr2_1:76301464-76301483 Msa0225920:CDS 30.0%
TCAGCACAAGAAACTTTATT+AGG - chr2_1:76301504-76301523 None:intergenic 30.0%
ATCTATGTATATTCACAGAG+TGG + chr2_1:76301679-76301698 Msa0225920:intron 30.0%
TCTATGTATATTCACAGAGT+GGG + chr2_1:76301680-76301699 Msa0225920:intron 30.0%
AGTTGATCTAAACTGAAGTT+GGG - chr2_1:76301787-76301806 None:intergenic 30.0%
! AAGTTGATCTAAACTGAAGT+TGG - chr2_1:76301788-76301807 None:intergenic 30.0%
TCTTATCTAAATGTTGTCGT+TGG - chr2_1:76301924-76301943 None:intergenic 30.0%
! CTTGATGAATTAGTCTATAG+AGG + chr2_1:76302060-76302079 Msa0225920:intron 30.0%
TAACTAAACGCTTCAATTTC+AGG + chr2_1:76302465-76302484 Msa0225920:intron 30.0%
!! GCAACTGTTTTAAGTATGTT+GGG - chr2_1:76302581-76302600 None:intergenic 30.0%
!! TGCAACTGTTTTAAGTATGT+TGG - chr2_1:76302582-76302601 None:intergenic 30.0%
CAAAAACAATGTCCTCAAAA+TGG + chr2_1:76302600-76302619 Msa0225920:CDS 30.0%
! AAATTGACAACGTTATTTCC+AGG - chr2_1:76302627-76302646 None:intergenic 30.0%
TCTAATTTATCAGGAGTTGT+TGG - chr2_1:76302654-76302673 None:intergenic 30.0%
AACTACTACAACAATCTTCA+AGG + chr2_1:76302678-76302697 Msa0225920:CDS 30.0%
CAACAATCTTCAAGGTAAAA+AGG + chr2_1:76302686-76302705 Msa0225920:CDS 30.0%
AAAGTTGTTGACAATGCTAA+TGG - chr2_1:76302760-76302779 None:intergenic 30.0%
ATTAGCATTGTCAACAACTT+TGG + chr2_1:76302759-76302778 Msa0225920:CDS 30.0%
!!! AGTTCTGGAAGAAAACATTT+TGG - chr2_1:76302791-76302810 None:intergenic 30.0%
TCTAATTTCTCCTTTCTTTC+CGG - chr2_1:76302856-76302875 None:intergenic 30.0%
TTTAGTTGAAATGTGGTGAT+TGG + chr2_1:76302990-76303009 Msa0225920:three_prime_UTR 30.0%
AACCTCAATATCATATAGCT+TGG + chr2_1:76300953-76300972 Msa0225920:five_prime_UTR 30.0%
TACCAAGCTATATGATATTG+AGG - chr2_1:76300958-76300977 None:intergenic 30.0%
ATTAAAAGTGAACAAGATGC+TGG + chr2_1:76301408-76301427 Msa0225920:CDS 30.0%
GATAACATCCAATCTTCTTA+AGG - chr2_1:76301448-76301467 None:intergenic 30.0%
TATCAATCAGATTAAGACTG+AGG + chr2_1:76301464-76301483 Msa0225920:CDS 30.0%
TCAGCACAAGAAACTTTATT+AGG - chr2_1:76301504-76301523 None:intergenic 30.0%
ATCTATGTATATTCACAGAG+TGG + chr2_1:76301679-76301698 Msa0225920:intron 30.0%
TCTATGTATATTCACAGAGT+GGG + chr2_1:76301680-76301699 Msa0225920:intron 30.0%
AGTTGATCTAAACTGAAGTT+GGG - chr2_1:76301787-76301806 None:intergenic 30.0%
! AAGTTGATCTAAACTGAAGT+TGG - chr2_1:76301788-76301807 None:intergenic 30.0%
TCTTATCTAAATGTTGTCGT+TGG - chr2_1:76301924-76301943 None:intergenic 30.0%
! CTTGATGAATTAGTCTATAG+AGG + chr2_1:76302060-76302079 Msa0225920:intron 30.0%
TAACTAAACGCTTCAATTTC+AGG + chr2_1:76302465-76302484 Msa0225920:intron 30.0%
!! GCAACTGTTTTAAGTATGTT+GGG - chr2_1:76302581-76302600 None:intergenic 30.0%
!! TGCAACTGTTTTAAGTATGT+TGG - chr2_1:76302582-76302601 None:intergenic 30.0%
CAAAAACAATGTCCTCAAAA+TGG + chr2_1:76302600-76302619 Msa0225920:CDS 30.0%
! AAATTGACAACGTTATTTCC+AGG - chr2_1:76302627-76302646 None:intergenic 30.0%
TCTAATTTATCAGGAGTTGT+TGG - chr2_1:76302654-76302673 None:intergenic 30.0%
AACTACTACAACAATCTTCA+AGG + chr2_1:76302678-76302697 Msa0225920:CDS 30.0%
CAACAATCTTCAAGGTAAAA+AGG + chr2_1:76302686-76302705 Msa0225920:CDS 30.0%
AAAGTTGTTGACAATGCTAA+TGG - chr2_1:76302760-76302779 None:intergenic 30.0%
ATTAGCATTGTCAACAACTT+TGG + chr2_1:76302759-76302778 Msa0225920:CDS 30.0%
!!! AGTTCTGGAAGAAAACATTT+TGG - chr2_1:76302791-76302810 None:intergenic 30.0%
TCTAATTTCTCCTTTCTTTC+CGG - chr2_1:76302856-76302875 None:intergenic 30.0%
TTTAGTTGAAATGTGGTGAT+TGG + chr2_1:76302990-76303009 Msa0225920:three_prime_UTR 30.0%
ATAGGCCATAACATGACTAT+AGG - chr2_1:76300896-76300915 None:intergenic 35.0%
ATATGATATTGAGGTTGCTG+TGG - chr2_1:76300949-76300968 None:intergenic 35.0%
CTATGTATATTCACAGAGTG+GGG + chr2_1:76301681-76301700 Msa0225920:intron 35.0%
TATGTATATTCACAGAGTGG+GGG + chr2_1:76301682-76301701 Msa0225920:intron 35.0%
!!! TGGAAGATTTTGATTGGCAA+GGG - chr2_1:76301761-76301780 None:intergenic 35.0%
!! AAATCTGCTTTTGCTGATCA+AGG + chr2_1:76301808-76301827 Msa0225920:CDS 35.0%
! TGAATTAGTCTATAGAGGAG+TGG + chr2_1:76302065-76302084 Msa0225920:intron 35.0%
! GAATTAGTCTATAGAGGAGT+GGG + chr2_1:76302066-76302085 Msa0225920:intron 35.0%
!! AAATTGCATCGGTTAACACT+TGG + chr2_1:76302292-76302311 Msa0225920:intron 35.0%
TTATACGACTTCGACAATAC+TGG + chr2_1:76302534-76302553 Msa0225920:CDS 35.0%
! TTATTTCCAGGTCCATTTTG+AGG - chr2_1:76302615-76302634 None:intergenic 35.0%
TCAAGAATTGTTCTCAACAC+CGG + chr2_1:76302725-76302744 Msa0225920:CDS 35.0%
! GGGTTACTTTAGTTGAAATG+TGG + chr2_1:76302983-76303002 Msa0225920:three_prime_UTR 35.0%
!! AATAAAGAGAAGTGCTAGCT+AGG + chr2_1:76303021-76303040 Msa0225920:three_prime_UTR 35.0%
AGCACATAACATACACATCA+TGG - chr2_1:76303057-76303076 None:intergenic 35.0%
ATAGGCCATAACATGACTAT+AGG - chr2_1:76300896-76300915 None:intergenic 35.0%
ATATGATATTGAGGTTGCTG+TGG - chr2_1:76300949-76300968 None:intergenic 35.0%
CTATGTATATTCACAGAGTG+GGG + chr2_1:76301681-76301700 Msa0225920:intron 35.0%
TATGTATATTCACAGAGTGG+GGG + chr2_1:76301682-76301701 Msa0225920:intron 35.0%
!!! TGGAAGATTTTGATTGGCAA+GGG - chr2_1:76301761-76301780 None:intergenic 35.0%
!! AAATCTGCTTTTGCTGATCA+AGG + chr2_1:76301808-76301827 Msa0225920:CDS 35.0%
! TGAATTAGTCTATAGAGGAG+TGG + chr2_1:76302065-76302084 Msa0225920:intron 35.0%
! GAATTAGTCTATAGAGGAGT+GGG + chr2_1:76302066-76302085 Msa0225920:intron 35.0%
!! AAATTGCATCGGTTAACACT+TGG + chr2_1:76302292-76302311 Msa0225920:intron 35.0%
TTATACGACTTCGACAATAC+TGG + chr2_1:76302534-76302553 Msa0225920:CDS 35.0%
! TTATTTCCAGGTCCATTTTG+AGG - chr2_1:76302615-76302634 None:intergenic 35.0%
TCAAGAATTGTTCTCAACAC+CGG + chr2_1:76302725-76302744 Msa0225920:CDS 35.0%
! GGGTTACTTTAGTTGAAATG+TGG + chr2_1:76302983-76303002 Msa0225920:three_prime_UTR 35.0%
!! AATAAAGAGAAGTGCTAGCT+AGG + chr2_1:76303021-76303040 Msa0225920:three_prime_UTR 35.0%
AGCACATAACATACACATCA+TGG - chr2_1:76303057-76303076 None:intergenic 35.0%
CATAACATGACTATAGGTGG+TGG - chr2_1:76300890-76300909 None:intergenic 40.0%
CACCACCTATAGTCATGTTA+TGG + chr2_1:76300888-76300907 Msa0225920:five_prime_UTR 40.0%
AGCTGTTGCTATGAGACTAA+GGG - chr2_1:76300991-76301010 None:intergenic 40.0%
TGCTGTGTAGTAGTTGTGTT+TGG + chr2_1:76301014-76301033 Msa0225920:CDS 40.0%
TGTGTAGTAGTTGTGTTTGG+AGG + chr2_1:76301017-76301036 Msa0225920:CDS 40.0%
AGTTGTGCATTTGAGGAGAA+GGG - chr2_1:76301047-76301066 None:intergenic 40.0%
AAGTTGTGCATTTGAGGAGA+AGG - chr2_1:76301048-76301067 None:intergenic 40.0%
!! CAAGTTTTGGCGTAAAAGTC+TGG - chr2_1:76301074-76301093 None:intergenic 40.0%
! TTGCAATTGGGGACAAGTTT+TGG - chr2_1:76301087-76301106 None:intergenic 40.0%
CAATCAGATTAAGACTGAGG+TGG + chr2_1:76301467-76301486 Msa0225920:CDS 40.0%
!!! CTGGAAGATTTTGATTGGCA+AGG - chr2_1:76301762-76301781 None:intergenic 40.0%
CTTGCCAATCAAAATCTTCC+AGG + chr2_1:76301760-76301779 Msa0225920:CDS 40.0%
CTCTCAGGTATGCAAATACA+TGG + chr2_1:76301856-76301875 Msa0225920:intron 40.0%
! CATCGGTTAACACTTGGATA+AGG + chr2_1:76302298-76302317 Msa0225920:intron 40.0%
GATGAGGAATTGTTCGAACT+AGG + chr2_1:76302346-76302365 Msa0225920:intron 40.0%
TCATGTGCTATATCGCTCTA+GGG - chr2_1:76302428-76302447 None:intergenic 40.0%
ATCATGTGCTATATCGCTCT+AGG - chr2_1:76302429-76302448 None:intergenic 40.0%
TAGAGCGATATAGCACATGA+TGG + chr2_1:76302428-76302447 Msa0225920:intron 40.0%
! ATTTCAGGTGCCCATACATT+AGG + chr2_1:76302480-76302499 Msa0225920:intron 40.0%
ACGTGCTCTTCCTAATGTAT+GGG - chr2_1:76302493-76302512 None:intergenic 40.0%
AACGTGCTCTTCCTAATGTA+TGG - chr2_1:76302494-76302513 None:intergenic 40.0%
AAGTATGTTGGGTCAAGAGT+TGG - chr2_1:76302570-76302589 None:intergenic 40.0%
CAAGAATTGTTCTCAACACC+GGG + chr2_1:76302726-76302745 Msa0225920:CDS 40.0%
CCTCTTCAGAATCAATGGAT+GGG + chr2_1:76302931-76302950 Msa0225920:CDS 40.0%
CTCTTCAGAATCAATGGATG+GGG + chr2_1:76302932-76302951 Msa0225920:CDS 40.0%
AGAATCAATGGATGGGGATA+TGG + chr2_1:76302938-76302957 Msa0225920:CDS 40.0%
CATAACATGACTATAGGTGG+TGG - chr2_1:76300890-76300909 None:intergenic 40.0%
CACCACCTATAGTCATGTTA+TGG + chr2_1:76300888-76300907 Msa0225920:five_prime_UTR 40.0%
AGCTGTTGCTATGAGACTAA+GGG - chr2_1:76300991-76301010 None:intergenic 40.0%
TGCTGTGTAGTAGTTGTGTT+TGG + chr2_1:76301014-76301033 Msa0225920:CDS 40.0%
TGTGTAGTAGTTGTGTTTGG+AGG + chr2_1:76301017-76301036 Msa0225920:CDS 40.0%
AGTTGTGCATTTGAGGAGAA+GGG - chr2_1:76301047-76301066 None:intergenic 40.0%
AAGTTGTGCATTTGAGGAGA+AGG - chr2_1:76301048-76301067 None:intergenic 40.0%
!! CAAGTTTTGGCGTAAAAGTC+TGG - chr2_1:76301074-76301093 None:intergenic 40.0%
! TTGCAATTGGGGACAAGTTT+TGG - chr2_1:76301087-76301106 None:intergenic 40.0%
CAATCAGATTAAGACTGAGG+TGG + chr2_1:76301467-76301486 Msa0225920:CDS 40.0%
!!! CTGGAAGATTTTGATTGGCA+AGG - chr2_1:76301762-76301781 None:intergenic 40.0%
CTTGCCAATCAAAATCTTCC+AGG + chr2_1:76301760-76301779 Msa0225920:CDS 40.0%
CTCTCAGGTATGCAAATACA+TGG + chr2_1:76301856-76301875 Msa0225920:intron 40.0%
! CATCGGTTAACACTTGGATA+AGG + chr2_1:76302298-76302317 Msa0225920:intron 40.0%
GATGAGGAATTGTTCGAACT+AGG + chr2_1:76302346-76302365 Msa0225920:intron 40.0%
TCATGTGCTATATCGCTCTA+GGG - chr2_1:76302428-76302447 None:intergenic 40.0%
ATCATGTGCTATATCGCTCT+AGG - chr2_1:76302429-76302448 None:intergenic 40.0%
TAGAGCGATATAGCACATGA+TGG + chr2_1:76302428-76302447 Msa0225920:intron 40.0%
! ATTTCAGGTGCCCATACATT+AGG + chr2_1:76302480-76302499 Msa0225920:intron 40.0%
ACGTGCTCTTCCTAATGTAT+GGG - chr2_1:76302493-76302512 None:intergenic 40.0%
AACGTGCTCTTCCTAATGTA+TGG - chr2_1:76302494-76302513 None:intergenic 40.0%
AAGTATGTTGGGTCAAGAGT+TGG - chr2_1:76302570-76302589 None:intergenic 40.0%
CAAGAATTGTTCTCAACACC+GGG + chr2_1:76302726-76302745 Msa0225920:CDS 40.0%
CCTCTTCAGAATCAATGGAT+GGG + chr2_1:76302931-76302950 Msa0225920:CDS 40.0%
CTCTTCAGAATCAATGGATG+GGG + chr2_1:76302932-76302951 Msa0225920:CDS 40.0%
AGAATCAATGGATGGGGATA+TGG + chr2_1:76302938-76302957 Msa0225920:CDS 40.0%
GGCCATAACATGACTATAGG+TGG - chr2_1:76300893-76300912 None:intergenic 45.0%
GAGGTTGCTGTGGTTGATTA+GGG - chr2_1:76300939-76300958 None:intergenic 45.0%
TGAGGTTGCTGTGGTTGATT+AGG - chr2_1:76300940-76300959 None:intergenic 45.0%
GAGCTGTTGCTATGAGACTA+AGG - chr2_1:76300992-76301011 None:intergenic 45.0%
TGGACGAAGTTGTGCATTTG+AGG - chr2_1:76301054-76301073 None:intergenic 45.0%
GATATTCTCACACTTGCAGC+TGG + chr2_1:76301522-76301541 Msa0225920:CDS 45.0%
! AGCTGGAGTATCTTCTGTTC+TGG + chr2_1:76301539-76301558 Msa0225920:CDS 45.0%
GATCGTTCCATTGGGAAGAA+GGG + chr2_1:76301714-76301733 Msa0225920:CDS 45.0%
AGACTATCCCTTCTTCCCAA+TGG - chr2_1:76301724-76301743 None:intergenic 45.0%
!! GGGACCTGGAAGATTTTGAT+TGG - chr2_1:76301767-76301786 None:intergenic 45.0%
TCTAAACTGAAGTTGGGACC+TGG - chr2_1:76301781-76301800 None:intergenic 45.0%
TGCTGATCAAGGACTCAACA+CGG + chr2_1:76301819-76301838 Msa0225920:CDS 45.0%
GTTGATCTTGTAGCACTCTC+AGG + chr2_1:76301841-76301860 Msa0225920:CDS 45.0%
CAATGTCCTCAAAATGGACC+TGG + chr2_1:76302606-76302625 Msa0225920:CDS 45.0%
ATGCTAATGGTATCTGCACC+CGG - chr2_1:76302747-76302766 None:intergenic 45.0%
GGTAATATTGGCGTGCTTAC+CGG + chr2_1:76302834-76302853 Msa0225920:CDS 45.0%
TGAATTGGATCTTGCCACTG+TGG + chr2_1:76302908-76302927 Msa0225920:CDS 45.0%
TGTGGCCTCTTCAGAATCAA+TGG + chr2_1:76302926-76302945 Msa0225920:CDS 45.0%
GCCTCTTCAGAATCAATGGA+TGG + chr2_1:76302930-76302949 Msa0225920:CDS 45.0%
!! CCCATCCATTGATTCTGAAG+AGG - chr2_1:76302934-76302953 None:intergenic 45.0%
GGCCATAACATGACTATAGG+TGG - chr2_1:76300893-76300912 None:intergenic 45.0%
GAGGTTGCTGTGGTTGATTA+GGG - chr2_1:76300939-76300958 None:intergenic 45.0%
TGAGGTTGCTGTGGTTGATT+AGG - chr2_1:76300940-76300959 None:intergenic 45.0%
GAGCTGTTGCTATGAGACTA+AGG - chr2_1:76300992-76301011 None:intergenic 45.0%
TGGACGAAGTTGTGCATTTG+AGG - chr2_1:76301054-76301073 None:intergenic 45.0%
GATATTCTCACACTTGCAGC+TGG + chr2_1:76301522-76301541 Msa0225920:CDS 45.0%
! AGCTGGAGTATCTTCTGTTC+TGG + chr2_1:76301539-76301558 Msa0225920:CDS 45.0%
GATCGTTCCATTGGGAAGAA+GGG + chr2_1:76301714-76301733 Msa0225920:CDS 45.0%
AGACTATCCCTTCTTCCCAA+TGG - chr2_1:76301724-76301743 None:intergenic 45.0%
!! GGGACCTGGAAGATTTTGAT+TGG - chr2_1:76301767-76301786 None:intergenic 45.0%
TCTAAACTGAAGTTGGGACC+TGG - chr2_1:76301781-76301800 None:intergenic 45.0%
TGCTGATCAAGGACTCAACA+CGG + chr2_1:76301819-76301838 Msa0225920:CDS 45.0%
GTTGATCTTGTAGCACTCTC+AGG + chr2_1:76301841-76301860 Msa0225920:CDS 45.0%
CAATGTCCTCAAAATGGACC+TGG + chr2_1:76302606-76302625 Msa0225920:CDS 45.0%
ATGCTAATGGTATCTGCACC+CGG - chr2_1:76302747-76302766 None:intergenic 45.0%
GGTAATATTGGCGTGCTTAC+CGG + chr2_1:76302834-76302853 Msa0225920:CDS 45.0%
TGAATTGGATCTTGCCACTG+TGG + chr2_1:76302908-76302927 Msa0225920:CDS 45.0%
TGTGGCCTCTTCAGAATCAA+TGG + chr2_1:76302926-76302945 Msa0225920:CDS 45.0%
GCCTCTTCAGAATCAATGGA+TGG + chr2_1:76302930-76302949 Msa0225920:CDS 45.0%
!! CCCATCCATTGATTCTGAAG+AGG - chr2_1:76302934-76302953 None:intergenic 45.0%
!! TAAAATTACTAAAAATAATT+GGG - chr2_1:76301579-76301598 None:intergenic 5.0%
!!! TATTAAAATTTAAAATATTG+AGG + chr2_1:76302013-76302032 Msa0225920:intron 5.0%
!! TAAAATTACTAAAAATAATT+GGG - chr2_1:76301579-76301598 None:intergenic 5.0%
!!! TATTAAAATTTAAAATATTG+AGG + chr2_1:76302013-76302032 Msa0225920:intron 5.0%
GAATGCCTGCGAGTATCATC+AGG + chr2_1:76301153-76301172 Msa0225920:CDS 50.0%
TGAAGCCTGATGATACTCGC+AGG - chr2_1:76301161-76301180 None:intergenic 50.0%
! TCCAGGTTGGATCGTTCCAT+TGG + chr2_1:76301705-76301724 Msa0225920:CDS 50.0%
! CCAGGTTGGATCGTTCCATT+GGG + chr2_1:76301706-76301725 Msa0225920:CDS 50.0%
GGATCGTTCCATTGGGAAGA+AGG + chr2_1:76301713-76301732 Msa0225920:CDS 50.0%
GTTGGGTCAAGAGTTGGATC+AGG - chr2_1:76302564-76302583 None:intergenic 50.0%
! TGATTCTGAAGAGGCCACAG+TGG - chr2_1:76302925-76302944 None:intergenic 50.0%
GAATGCCTGCGAGTATCATC+AGG + chr2_1:76301153-76301172 Msa0225920:CDS 50.0%
TGAAGCCTGATGATACTCGC+AGG - chr2_1:76301161-76301180 None:intergenic 50.0%
! TCCAGGTTGGATCGTTCCAT+TGG + chr2_1:76301705-76301724 Msa0225920:CDS 50.0%
! CCAGGTTGGATCGTTCCATT+GGG + chr2_1:76301706-76301725 Msa0225920:CDS 50.0%
GGATCGTTCCATTGGGAAGA+AGG + chr2_1:76301713-76301732 Msa0225920:CDS 50.0%
GTTGGGTCAAGAGTTGGATC+AGG - chr2_1:76302564-76302583 None:intergenic 50.0%
! TGATTCTGAAGAGGCCACAG+TGG - chr2_1:76302925-76302944 None:intergenic 50.0%
TATTCACAGAGTGGGGGTCC+AGG + chr2_1:76301688-76301707 Msa0225920:intron 55.0%
CCCAATGGAACGATCCAACC+TGG - chr2_1:76301709-76301728 None:intergenic 55.0%
GGCGTGCTTACCGGAAAGAA+AGG + chr2_1:76302843-76302862 Msa0225920:CDS 55.0%
TATTCACAGAGTGGGGGTCC+AGG + chr2_1:76301688-76301707 Msa0225920:intron 55.0%
CCCAATGGAACGATCCAACC+TGG - chr2_1:76301709-76301728 None:intergenic 55.0%
GGCGTGCTTACCGGAAAGAA+AGG + chr2_1:76302843-76302862 Msa0225920:CDS 55.0%
CACAGAGTGGGGGTCCAGGT+TGG + chr2_1:76301692-76301711 Msa0225920:intron 65.0%
CACAGAGTGGGGGTCCAGGT+TGG + chr2_1:76301692-76301711 Msa0225920:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 76300883 76303138 76300883 ID=Msa0225920;Name=Msa0225920
chr2_1 mRNA 76300883 76303138 76300883 ID=Msa0225920-mRNA-1;Parent=Msa0225920;Name=Msa0225920-mRNA-1;_AED=0.06;_eAED=0.06;_QI=98|1|1|1|1|1|4|164|355
chr2_1 exon 76300883 76301202 76300883 ID=Msa0225920-mRNA-1:exon:23022;Parent=Msa0225920-mRNA-1
chr2_1 exon 76301369 76301560 76301369 ID=Msa0225920-mRNA-1:exon:23023;Parent=Msa0225920-mRNA-1
chr2_1 exon 76301697 76301862 76301697 ID=Msa0225920-mRNA-1:exon:23024;Parent=Msa0225920-mRNA-1
chr2_1 exon 76302487 76303138 76302487 ID=Msa0225920-mRNA-1:exon:23025;Parent=Msa0225920-mRNA-1
chr2_1 five_prime_UTR 76300883 76300980 76300883 ID=Msa0225920-mRNA-1:five_prime_utr;Parent=Msa0225920-mRNA-1
chr2_1 CDS 76300981 76301202 76300981 ID=Msa0225920-mRNA-1:cds;Parent=Msa0225920-mRNA-1
chr2_1 CDS 76301369 76301560 76301369 ID=Msa0225920-mRNA-1:cds;Parent=Msa0225920-mRNA-1
chr2_1 CDS 76301697 76301862 76301697 ID=Msa0225920-mRNA-1:cds;Parent=Msa0225920-mRNA-1
chr2_1 CDS 76302487 76302974 76302487 ID=Msa0225920-mRNA-1:cds;Parent=Msa0225920-mRNA-1
chr2_1 three_prime_UTR 76302975 76303138 76302975 ID=Msa0225920-mRNA-1:three_prime_utr;Parent=Msa0225920-mRNA-1
Gene Sequence

>Msa0225920

ATGAACTCCCTTAGTCTCATAGCAACAGCTCTATGCTGTGTAGTAGTTGTGTTTGGAGGACTACCCTTCTCCTCAAATGCACAACTTCGTCCAGACTTTTACGCCAAAACTTGTCCCCAATTGCAATCTATTGTATTTCAAATCTTAGAGAAGGTTTCTAAGACTGATTCTCGAATGCCTGCGAGTATCATCAGGCTTCACTTTCATGATTGTTTCGTTCAAGGTTGTGATGCATCAGTATTGTTGAATAACACTGATACTATTAAAAGTGAACAAGATGCTGGTCCAAATGTAAATTCCTTAAGAAGATTGGATGTTATCAATCAGATTAAGACTGAGGTGGAAAAAGTTTGTCCTAATAAAGTTTCTTGTGCTGATATTCTCACACTTGCAGCTGGAGTATCTTCTGTTCTGAGTGGGGGTCCAGGTTGGATCGTTCCATTGGGAAGAAGGGATAGTCTAACAGCAAGTCAATCCCTTGCCAATCAAAATCTTCCAGGTCCCAACTTCAGTTTAGATCAACTTAAATCTGCTTTTGCTGATCAAGGACTCAACACGGTTGATCTTGTAGCACTCTCAGGTGCCCATACATTAGGAAGAGCACGTTGCCTTTTCATACTTGATCGATTATACGACTTCGACAATACTGGTAAACCTGATCCAACTCTTGACCCAACATACTTAAAACAGTTGCAAAAACAATGTCCTCAAAATGGACCTGGAAATAACGTTGTCAATTTCGATCCAACAACTCCTGATAAATTAGACAAGAACTACTACAACAATCTTCAAGGTAAAAAGGGTTTGCTTCAAAGTGATCAAGAATTGTTCTCAACACCGGGTGCAGATACCATTAGCATTGTCAACAACTTTGGAAATAACCAAAATGTTTTCTTCCAGAACTTTATAAATTCAATGATTAAAATGGGTAATATTGGCGTGCTTACCGGAAAGAAAGGAGAAATTAGAAAACAATGCAATTTTGTTAACAAGAAATCTTCTGAATTGGATCTTGCCACTGTGGCCTCTTCAGAATCAATGGATGGGGATATGGTTAGTTCAATCTAA

Protein sequence

>Msa0225920

MNSLSLIATALCCVVVVFGGLPFSSNAQLRPDFYAKTCPQLQSIVFQILEKVSKTDSRMPASIIRLHFHDCFVQGCDASVLLNNTDTIKSEQDAGPNVNSLRRLDVINQIKTEVEKVCPNKVSCADILTLAAGVSSVLSGGPGWIVPLGRRDSLTASQSLANQNLPGPNFSLDQLKSAFADQGLNTVDLVALSGAHTLGRARCLFILDRLYDFDNTGKPDPTLDPTYLKQLQKQCPQNGPGNNVVNFDPTTPDKLDKNYYNNLQGKKGLLQSDQELFSTPGADTISIVNNFGNNQNVFFQNFINSMIKMGNIGVLTGKKGEIRKQCNFVNKKSSELDLATVASSESMDGDMVSSI*