AlfalfaGEDB | Msa1228310

M. sativa cultivar zhongmu-4 / Msa1228310

KEGG: K08237
GO: -
PFAM: PF00201.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228310	XP_013443796.2	95.754	471	20	0	1	471	1	471	0.0	924

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228310	sp\|Q9AR73\|HQGT_RAUSE	48.203	473	231	10	4	470	1	465	6.30e-148	433

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228310	A0A396GIN6	95.754	471	20	0	1	471	1	471	0.0	924

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011720	Msa1228310	0.804236	2.379616e-49	-8.615850e-47
Msa0050720	Msa1228310	0.817524	3.153995e-52	-8.615850e-47
Msa0050770	Msa1228310	0.811725	6.063388e-51	-8.615850e-47
Msa0105340	Msa1228310	0.821925	3.115554e-53	-8.615850e-47
Msa0105700	Msa1228310	0.820048	8.424749e-53	-8.615850e-47
Msa0111310	Msa1228310	0.800330	1.515796e-48	-8.615850e-47
Msa0112420	Msa1228310	0.801084	1.063660e-48	-8.615850e-47
Msa0152170	Msa1228310	0.810262	1.258198e-50	-8.615850e-47
Msa0178350	Msa1228310	0.804276	2.334650e-49	-8.615850e-47
Msa0179860	Msa1228310	0.803192	3.919055e-49	-8.615850e-47

Showing 1 to 10 of 127 entries

Previous1 2 3 4 5…13Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228310	MtrunA17_Chr8g0335141	95.754	471	20	0	1	471	1	471	0.0	924
Msa1228310	MtrunA17_Chr8g0335161	85.928	469	65	1	4	471	1	469	0.0	829
Msa1228310	MtrunA17_Chr6g0459311	72.766	470	123	3	4	471	8	474	0.0	704
Msa1228310	MtrunA17_Chr6g0486251	71.336	464	128	3	4	465	1	461	0.0	682
Msa1228310	MtrunA17_Chr6g0486201	71.336	464	128	3	4	465	1	461	0.0	682
Msa1228310	MtrunA17_Chr8g0361371	58.351	473	179	9	3	464	1	466	0.0	536
Msa1228310	MtrunA17_Chr8g0334831	55.809	482	186	10	4	465	1	475	1.53e-178	509
Msa1228310	MtrunA17_Chr7g0232411	46.414	474	242	7	4	471	1	468	3.46e-140	410
Msa1228310	MtrunA17_Chr7g0232391	46.835	474	240	7	4	471	1	468	5.76e-140	410
Msa1228310	MtrunA17_Chr7g0232341	45.781	474	244	8	4	470	1	468	2.24e-138	406

Showing 1 to 10 of 286 entries

Previous1 2 3 4 5…29Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228310	AT4G01070.1	45.299	468	242	10	5	465	4	464	1.41e-133	394
Msa1228310	AT1G01420.2	45.923	466	235	12	8	465	10	466	8.10e-131	387
Msa1228310	AT1G01420.1	45.923	466	235	12	8	465	7	463	9.76e-131	387
Msa1228310	AT1G01390.1	45.923	466	234	12	8	464	7	463	4.69e-120	360
Msa1228310	AT1G01390.2	45.923	466	234	12	8	464	24	480	7.37e-120	360
Msa1228310	AT3G50740.1	37.967	482	268	12	3	465	1	470	1.43e-98	305
Msa1228310	AT5G26310.1	36.810	489	272	15	1	471	1	470	2.57e-96	299
Msa1228310	AT5G66690.1	36.864	472	265	13	1	457	1	454	6.28e-92	288
Msa1228310	AT2G18570.1	35.908	479	277	16	7	469	3	467	1.23e-82	263
Msa1228310	AT4G36770.1	35.683	454	264	13	11	450	6	445	2.22e-80	257

Showing 1 to 10 of 136 entries

Previous1 2 3 4 5…14Next

Find 89 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGCTAAGTCCAGGGGA+AGG	0.656957	8_2:+3799197	None:intergenic
AAGAAACAGAGAAAATGGAT+TGG	0.554526	8_2:-3798235	Msa1228310:CDS
AAGAAGTTGCTAACTGTGTA+AGG	0.451651	8_2:-3797984	Msa1228310:CDS
AATAGAGGCCACGCAATCAT+AGG	0.415417	8_2:+3798102	None:intergenic
AATTAAATGGCTAAGTCCAG+GGG	0.708782	8_2:+3799193	None:intergenic
AATTAGACTCATTTCTGTTA+AGG	0.345841	8_2:+3798508	None:intergenic
ACATAAAGAACAGAACCTGG+TGG	0.755413	8_2:+3798438	None:intergenic
ACATTAATTCAATGTGTTTA+AGG	0.145467	8_2:-3798476	Msa1228310:CDS
ACATTCATCATTCCAACACT+TGG	0.561131	8_2:-3799116	Msa1228310:CDS
ACTTTGGAGAGTGTGGTTAA+TGG	0.345363	8_2:-3798129	Msa1228310:CDS

Showing 1 to 10 of 89 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGAATGAAGTCTATGTT+TGG	+	chr8_2:3798032-3798051	None:intergenic	30.0%
GGAATATCTTTGATATGGTA+AGG	+	chr8_2:3798380-3798399	None:intergenic	30.0%
GATCAGGAATATCTTTGATA+TGG	+	chr8_2:3798385-3798404	None:intergenic	30.0%
CAGAAATTCTCATTAGTTGA+TGG	-	chr8_2:3798458-3798477	Msa1228310:CDS	30.0%
TTAGACTCATTTCTGTTAAG+GGG	+	chr8_2:3798572-3798591	None:intergenic	30.0%
CCATTTGGTAAATACTCTAA+TGG	+	chr8_2:3798815-3798834	None:intergenic	30.0%
GTATTTACCAAATGGTTTCT+TGG	-	chr8_2:3798820-3798839	Msa1228310:CDS	30.0%
TTTCTTTCCAAGAAACCATT+TGG	+	chr8_2:3798830-3798849	None:intergenic	30.0%
TTGGAAAGAAACAGAGAAAA+TGG	-	chr8_2:3798839-3798858	Msa1228310:CDS	30.0%
AAGAAACAGAGAAAATGGAT+TGG	-	chr8_2:3798844-3798863	Msa1228310:CDS	30.0%

Showing 1 to 10 of 204 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	3797843	3799258	3797843	ID=Msa1228310;Name=Msa1228310
chr8_2	mRNA	3797843	3799258	3797843	ID=Msa1228310-mRNA-1;Parent=Msa1228310;Name=Msa1228310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|471
chr8_2	exon	3797843	3799258	3797843	ID=Msa1228310-mRNA-1:exon:1214;Parent=Msa1228310-mRNA-1
chr8_2	CDS	3797843	3799258	3797843	ID=Msa1228310-mRNA-1:cds;Parent=Msa1228310-mRNA-1

Gene Sequence

>Msa1228310

ATGCACATGATGAATAAAAAACCATGTATTGCTATGGTTCCTTCCCCTGGACTTAGCCATTTAATTCCACAAGTTGAATTTGCCAAACAATTACTTCAACAACACAATGAATTCATTGTCACATTCATCATTCCAACACTTGGTCCTCTTACTCCTTCAATGCAACAAGTCTTGAACAATCTTCCACCAAACATAGACTTCATTCTTCTTCCTCAAGTAAAAAACATTCAACAAAGCCATGATCCAGCAGCACAAATGAAACTCATTGTGAAACATTCTATTCCATTTCTACAACAAGAAGTCAAATCACTCATTTCCAAAACTAACCTTGTTTCTTTAATCTTTAGTATATTTTCAACAGATGCATATGAAGTTGCTAAACAGTTCAACTTGTCTTCTTATCTTTTCTATGCCTCAGGAGCTGTTCCAACATCGTTTTGTCTCACTCTTCCGATTCTCAACGACTCTATTTCCTCGGAAATAGAGTTCTTAGAGTCAGCTTATGAAACTGTGAATGTTCCAGGTAGTATAGTCCCTTACCATATCAAAGATATTCCTGATCCACTTCTATGTGAAAGATCAAGTTTAGAGTACAAATCATTTCTTGATGTATGTCAGAAATTCTCATTAGTTGATGGTCTTATCATAAACACTTTCAATGATTTGGAACCTGAGGTTATAAGGCTTCTTCAAGAAAAAAAGAAACCTTGTTTTTATCCAGTGGGACCCCTTAACAGAAATGAGTCTAATTGTGAAGATAACATTAATTCAATGTGTTTAAGGTGGTTGGAAAATCAACCACCAGGTTCTGTTCTTTATGTATGTTTTGGAAGTGGTGGAACAGTTTCTCATGAACAACTCAATGAGTTAGCATTTGGATTAGAATTGAGTGGCAAGAAATTCTTGTGGGTTGTGAGAGTTCCAAGTAAAGCTGTTAACTCTGCTTATTTTGTTGGAGCAAAAGATGATCCATTAGAGTATTTACCAAATGGTTTCTTGGAAAGAAACAGAGAAAATGGATTGGTTGTTCCATCATGGGCACCTCAAGTTGAGATTCTTGGTCATGGTTCAATTGGTGGTTTTTTGAGTCATTGTGGTTGGGGTTCAACTTTGGAGAGTGTGGTTAATGGTGTTCCTATGATTGCGTGGCCTCTATTTGCAGAACAAAGGATGAATGCAAAATTATTGACAGATGAGCTCAAGGTGGCTGTGAGGCCGAAGATTGATGATGAAAGTGGGATAGTGAAAAGAGAAGAAGTTGCTAACTGTGTAAGGAGAATCATGGAAGGTGATGAAAGCTTGGAAATACAAAAGAGAATCAAGGAATTGAGTGTTGGTGCTGCTGTTGCAACAAGTGAAAATGGTTCATCTAAGAAGGCGCTCTCCTCTTTAGCATCGAGATTGCATAACTTTTGA

Protein sequence

>Msa1228310

MHMMNKKPCIAMVPSPGLSHLIPQVEFAKQLLQQHNEFIVTFIIPTLGPLTPSMQQVLNNLPPNIDFILLPQVKNIQQSHDPAAQMKLIVKHSIPFLQQEVKSLISKTNLVSLIFSIFSTDAYEVAKQFNLSSYLFYASGAVPTSFCLTLPILNDSISSEIEFLESAYETVNVPGSIVPYHIKDIPDPLLCERSSLEYKSFLDVCQKFSLVDGLIINTFNDLEPEVIRLLQEKKKPCFYPVGPLNRNESNCEDNINSMCLRWLENQPPGSVLYVCFGSGGTVSHEQLNELAFGLELSGKKFLWVVRVPSKAVNSAYFVGAKDDPLEYLPNGFLERNRENGLVVPSWAPQVEILGHGSIGGFLSHCGWGSTLESVVNGVPMIAWPLFAEQRMNAKLLTDELKVAVRPKIDDESGIVKREEVANCVRRIMEGDESLEIQKRIKELSVGAAVATSENGSSKKALSSLASRLHNF*