AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0313930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0313930 MtrunA17_Chr2g0283871 97.115 312 9 0 1 312 1 312 0.0 629
Msa0313930 MtrunA17_Chr4g0041151 50.000 318 106 7 11 311 19 300 2.21e-80 246
Msa0313930 MtrunA17_Chr8g0344681 40.728 302 142 10 19 309 64 339 5.66e-53 177
Msa0313930 MtrunA17_Chr2g0325841 32.075 371 162 9 11 299 34 396 1.19e-31 125
Msa0313930 MtrunA17_Chr1g0179531 37.624 101 57 3 23 122 133 228 8.26e-17 80.9
Msa0313930 MtrunA17_Chr6g0485241 36.170 94 55 2 23 115 130 219 2.48e-16 79.0
Msa0313930 MtrunA17_Chr1g0164461 36.735 98 55 2 18 115 33 123 3.25e-14 70.1
Msa0313930 MtrunA17_Chr3g0082261 37.755 98 54 2 18 115 33 123 7.18e-14 71.2
Msa0313930 MtrunA17_Chr2g0331931 36.752 117 67 3 14 128 263 374 1.70e-12 67.8
Msa0313930 MtrunA17_Chr4g0066271 31.915 94 62 2 22 114 116 208 3.43e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0313930 AT3G58630.2 42.857 336 131 9 3 313 2 301 5.26e-67 212
Msa0313930 AT3G58630.1 42.857 336 131 9 3 313 2 301 9.62e-67 212
Msa0313930 AT3G14180.1 33.333 345 157 10 19 305 80 409 3.31e-48 167
Msa0313930 AT3G11100.1 37.500 296 119 7 19 314 18 247 2.56e-46 157
Msa0313930 AT5G05550.3 38.176 296 112 8 19 314 20 244 1.03e-45 155
Msa0313930 AT5G05550.1 38.176 296 112 8 19 314 20 244 1.44e-45 155
Msa0313930 AT5G05550.2 39.446 289 104 9 19 307 20 237 1.44e-44 152
Msa0313930 AT1G54060.1 51.020 98 44 2 19 116 90 183 1.99e-21 94.0
Msa0313930 AT3G54390.1 27.451 306 168 12 5 303 16 274 2.59e-20 89.7
Msa0313930 AT3G54390.2 27.451 306 168 12 5 303 32 290 3.94e-20 89.4
Msa0313930 AT3G10030.2 35.433 127 74 3 23 145 161 283 9.24e-20 90.1
Msa0313930 AT3G10030.1 35.433 127 74 3 23 145 161 283 9.59e-20 90.1
Msa0313930 AT3G24490.1 37.634 93 53 2 23 115 90 177 4.16e-16 78.2
Msa0313930 AT2G44730.1 22.684 313 197 10 13 300 56 348 4.91e-13 69.3

Find 122 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAGAGAATGAGAAGAAAT+TGG 0.186132 2_4:+9436464 None:intergenic
GCAGAGGATGCAGATGTTTA+TGG 0.218617 2_4:-9435553 Msa0313930:CDS
AATCCGGCATCGGAGAAATT+AGG 0.223362 2_4:+9436426 None:intergenic
AATTTATCGAGGAGTAATTT+TGG 0.224510 2_4:-9431438 Msa0313930:three_prime_UTR
GGTACGGTCGCCGGTGTATT+GGG 0.229132 2_4:+9436543 None:intergenic
CATCGGAAATTTGCTAATTC+TGG 0.236718 2_4:-9435981 Msa0313930:CDS
AGTTGCTGAATTAATTTATA+AGG 0.256607 2_4:+9431378 None:intergenic
CGGTACGGTCGCCGGTGTAT+TGG 0.291738 2_4:+9436542 None:intergenic
AACTGTACTTAAGCCTAATT+CGG 0.314549 2_4:-9431359 Msa0313930:three_prime_UTR
ACTGAGGCAGATGGTGGATT+TGG 0.320650 2_4:-9435613 Msa0313930:CDS
AACTTCTTAGCACTGAAATT+AGG 0.324747 2_4:+9436065 None:intergenic
GAAGTGGATGAAGGGGATAA+AGG 0.329017 2_4:-9435711 Msa0313930:CDS
AGAGAGAATGAGAAGAAATT+GGG 0.337469 2_4:+9436465 None:intergenic
GTAGAGGAAGAGGAAGGGAG+GGG 0.346774 2_4:-9435738 Msa0313930:CDS
TCTGTGTAGCAGCCCGAATT+AGG 0.356170 2_4:+9431346 None:intergenic
TGATCGGAACACTCATGTTT+TGG 0.364662 2_4:-9431523 Msa0313930:three_prime_UTR
AAGTAGAGGAAGAGGAAGGG+AGG 0.369131 2_4:-9435740 Msa0313930:CDS
TGCGGCTACGGCTACGGTTA+TGG 0.377366 2_4:-9435880 Msa0313930:CDS
TTCCACTCTCGTCGATGCAT+GGG 0.378747 2_4:-9436330 Msa0313930:CDS
GTTGCTGAATTAATTTATAA+GGG 0.378967 2_4:+9431379 None:intergenic
AAGTGGATGAAGGGGATAAA+GGG 0.379670 2_4:-9435710 Msa0313930:CDS
GTCGAATGTACCGCAATTGC+AGG 0.389100 2_4:+9435945 None:intergenic
GACCAACAATCCTCGCGAAC+GGG 0.390355 2_4:+9436365 None:intergenic
GCATCGGAGAAATTAGGGTT+AGG 0.393814 2_4:+9436432 None:intergenic
CTTCCACTCTCGTCGATGCA+TGG 0.395037 2_4:-9436331 Msa0313930:CDS
AGAGGTGGAAGTAGAGGAAG+AGG 0.405371 2_4:-9435748 Msa0313930:CDS
GGAGGAAGTTGAGGAGGAAG+AGG 0.407734 2_4:-9435766 Msa0313930:CDS
GCGAAGGCGATAGAGAGTTT+TGG 0.411580 2_4:-9435666 Msa0313930:CDS
ATCCGGCATCGGAGAAATTA+GGG 0.411785 2_4:+9436427 None:intergenic
ATTAAGCGTGGAAAACCATC+TGG 0.413416 2_4:-9435507 Msa0313930:CDS
ATCAATTTCTTCACCGGTGG+CGG 0.426236 2_4:-9436042 Msa0313930:CDS
TCACCGAACCATTGCTCGCT+TGG 0.428590 2_4:+9431549 None:intergenic
TTCTGCTGTGGCTGCGGCTA+CGG 0.429255 2_4:-9435892 Msa0313930:CDS
AACCCTAATTTCTCCGATGC+CGG 0.432438 2_4:-9436429 Msa0313930:exon
TAGAGGAAGAGGAAGGGAGG+GGG 0.434612 2_4:-9435737 Msa0313930:CDS
AGCTGCAGCCGCTGCTGCTG+CGG 0.440024 2_4:-9435823 Msa0313930:CDS
AAAGAATCGTGGTGAAAATC+CGG 0.442007 2_4:+9436410 None:intergenic
GGAAAACCATCTGGGTCTAA+TGG 0.443061 2_4:-9435498 Msa0313930:CDS
GGGGAGTGAAGTGGATGAAG+GGG 0.444075 2_4:-9435718 Msa0313930:CDS
GTAATCTTCGTCAGAAAGAT+TGG 0.446554 2_4:-9436280 Msa0313930:CDS
AAGGGGATAAAGGGAGAGAA+GGG 0.448917 2_4:-9435701 Msa0313930:CDS
GAGAGAAGGGATGAAGAGGT+TGG 0.450498 2_4:-9435688 Msa0313930:CDS
TCCCCGTTCGCGAGGATTGT+TGG 0.451755 2_4:-9436367 Msa0313930:CDS
AAGATATAGAAAAGGTTAAA+CGG 0.453825 2_4:+9436507 None:intergenic
ATCAGCTTCCGCAGCAGCAG+CGG 0.459138 2_4:+9435815 None:intergenic
ACGGCTACGGTTATGGATGA+TGG 0.460585 2_4:-9435873 Msa0313930:CDS
GTGGAAGTAGAGGAAGAGGA+AGG 0.466313 2_4:-9435744 Msa0313930:CDS
TGATGAGGTGGAGGAAGTTG+AGG 0.467170 2_4:-9435775 Msa0313930:CDS
AGTAGAGGAAGAGGAAGGGA+GGG 0.467532 2_4:-9435739 Msa0313930:CDS
GAAGTTATCAATTTCTTCAC+CGG 0.471334 2_4:-9436048 Msa0313930:CDS
GATGCTGTTAACGCTCTTCA+TGG 0.472381 2_4:-9436245 Msa0313930:CDS
GCTAGGGTTACGGAATCTAA+TGG 0.474097 2_4:-9436140 Msa0313930:CDS
GGAGGAAGAGGTGGAAGTAG+AGG 0.482006 2_4:-9435754 Msa0313930:CDS
TGTGGCTGCGGCTACGGCTA+CGG 0.482385 2_4:-9435886 Msa0313930:CDS
ACTGTACTTAAGCCTAATTC+GGG 0.482591 2_4:-9431358 Msa0313930:three_prime_UTR
GGCGGTGACACCGTCGCCGC+CGG 0.485160 2_4:-9436024 Msa0313930:CDS
GTACGGTCGCCGGTGTATTG+GGG 0.487704 2_4:+9436544 None:intergenic
GAAGGGGATAAAGGGAGAGA+AGG 0.489329 2_4:-9435702 Msa0313930:CDS
GGAAGTTGAGGAGGAAGAGG+TGG 0.492049 2_4:-9435763 Msa0313930:CDS
CATCGGAGAAATTAGGGTTA+GGG 0.496578 2_4:+9436433 None:intergenic
AAGGGAGAGAAGGGATGAAG+AGG 0.497380 2_4:-9435692 Msa0313930:CDS
TATGGATACTCAAGTTCAGC+TGG 0.498348 2_4:-9435535 Msa0313930:CDS
TGCTGCTGCGGAAGCTGATG+AGG 0.500517 2_4:-9435811 Msa0313930:CDS
GGCGACGGTGTCACCGCCAC+CGG 0.505328 2_4:+9436029 None:intergenic
TGGAAGTAGAGGAAGAGGAA+GGG 0.505354 2_4:-9435743 Msa0313930:CDS
CGGAAATTTGCTAATTCTGG+TGG 0.506455 2_4:-9435978 Msa0313930:CDS
CTCTTCCGTTGATTCCTCAT+CGG 0.506683 2_4:-9435998 Msa0313930:CDS
GAGAGAATGAGAAGAAATTG+GGG 0.510113 2_4:+9436466 None:intergenic
GAATTATTCTGCTGTGGCTG+CGG 0.512580 2_4:-9435898 Msa0313930:CDS
GGAAGAGCCACCGGCGGCGA+CGG 0.520111 2_4:+9436014 None:intergenic
TACGGTCGCCGGTGTATTGG+GGG 0.535195 2_4:+9436545 None:intergenic
CGGCTACGGTTATGGATGAT+GGG 0.539093 2_4:-9435872 Msa0313930:CDS
TGAGGTGGAGGAAGTTGAGG+AGG 0.539115 2_4:-9435772 Msa0313930:CDS
TGGTGAAATGTATGAGAGAG+TGG 0.540008 2_4:-9435646 Msa0313930:CDS
AATGGTTCGGTGATGGTGAT+CGG 0.542347 2_4:-9431539 Msa0313930:three_prime_UTR
TAGCCAAGCGAGCAATGGTT+CGG 0.547840 2_4:-9431552 Msa0313930:three_prime_UTR
TGATTACACGGTACGGTCGC+CGG 0.549018 2_4:+9436534 None:intergenic
AGCGAGCAATGGTTCGGTGA+TGG 0.556635 2_4:-9431546 Msa0313930:three_prime_UTR
GGAATCAACGGAAGAGCCAC+CGG 0.563599 2_4:+9436005 None:intergenic
ACAATCCTCGCGAACGGGGA+CGG 0.571999 2_4:+9436370 None:intergenic
TCGTCGATGCATGGGGTCGT+CGG 0.574131 2_4:-9436322 Msa0313930:CDS
TGACCAACAATCCTCGCGAA+CGG 0.577799 2_4:+9436364 None:intergenic
CTAAAGATCTTGAAGTGCAG+AGG 0.579375 2_4:-9435569 Msa0313930:CDS
CAGTGGCGTTACCGCAGAAG+AGG 0.580552 2_4:-9435920 Msa0313930:CDS
TTAAACGGCGTGTGATTACA+CGG 0.580718 2_4:+9436522 None:intergenic
GGTGACACCGTCGCCGCCGG+TGG 0.582058 2_4:-9436021 Msa0313930:CDS
TGATGAGGATGATGAGGTGG+AGG 0.584183 2_4:-9435784 Msa0313930:CDS
ATCTCACCATTAGACCCAGA+TGG 0.584691 2_4:+9435492 None:intergenic
TTATTCATCACCTGCAATTG+CGG 0.591019 2_4:-9435955 Msa0313930:CDS
CGAACGGGGACGGTGCGTGA+CGG 0.602447 2_4:+9436380 None:intergenic
TGGTGGATTTGGAGAAACAA+AGG 0.604782 2_4:-9435602 Msa0313930:CDS
ACGGGGACGGTGCGTGACGG+TGG 0.605580 2_4:+9436383 None:intergenic
ACCCCATGCATCGACGAGAG+TGG 0.606737 2_4:+9436328 None:intergenic
TTCAGCTGATACTGTCATGA+GGG 0.607610 2_4:-9431475 Msa0313930:three_prime_UTR
ACGCACCGTCCCCGTTCGCG+AGG 0.609985 2_4:-9436375 Msa0313930:CDS
TGATGATGAGGATGATGAGG+TGG 0.613041 2_4:-9435787 Msa0313930:CDS
GAAGAGGAATTATTCTGCTG+TGG 0.613185 2_4:-9435904 Msa0313930:CDS
TCGTGGTGAAAATCCGGCAT+CGG 0.613818 2_4:+9436416 None:intergenic
ACAGAAACTGAGGCAGATGG+TGG 0.614677 2_4:-9435619 Msa0313930:CDS
AATTTCCGATGAGGAATCAA+CGG 0.616061 2_4:+9435993 None:intergenic
AGGGATGAAGAGGTTGGCGA+AGG 0.617802 2_4:-9435682 Msa0313930:CDS
ATAGCTAGCCAAGCGAGCAA+TGG 0.619212 2_4:-9431557 Msa0313930:three_prime_UTR
CTTCAGCTGATACTGTCATG+AGG 0.627950 2_4:-9431476 Msa0313930:three_prime_UTR
GTTATCAATTTCTTCACCGG+TGG 0.628483 2_4:-9436045 Msa0313930:CDS
GAGTGGAAGAACAGAAACTG+AGG 0.631673 2_4:-9435629 Msa0313930:CDS
CGGCGTGTGATTACACGGTA+CGG 0.633049 2_4:+9436527 None:intergenic
AGAACAGAAACTGAGGCAGA+TGG 0.635950 2_4:-9435622 Msa0313930:CDS
TCCACTCTCGTCGATGCATG+GGG 0.638750 2_4:-9436329 Msa0313930:CDS
ATCAACGGAAGAGCCACCGG+CGG 0.641820 2_4:+9436008 None:intergenic
GCAGAATAATTCCTCTTCTG+CGG 0.643324 2_4:+9435909 None:intergenic
GAATTAGCAAATTTCCGATG+AGG 0.643473 2_4:+9435984 None:intergenic
TTAAGCGTGGAAAACCATCT+GGG 0.647441 2_4:-9435506 Msa0313930:CDS
TGCGGTACATTCGACCGCAG+TGG 0.654902 2_4:-9435937 Msa0313930:CDS
AGCTGATGAGGATGATGATG+AGG 0.655311 2_4:-9435799 Msa0313930:CDS
ACCAACAATCCTCGCGAACG+GGG 0.660501 2_4:+9436366 None:intergenic
CTTTCTGACGAAGATTACCA+CGG 0.666897 2_4:+9436285 None:intergenic
CTCTAAATAGAAATTTATCG+AGG 0.667294 2_4:-9431449 Msa0313930:three_prime_UTR
GGATGATGATGAGGATGATG+AGG 0.668977 2_4:-9435790 Msa0313930:CDS
CGGTATCTTGAACTCAACCG+TGG 0.727584 2_4:-9436302 Msa0313930:CDS
CTTCTGCGGTAACGCCACTG+CGG 0.733396 2_4:+9435923 None:intergenic
CAGCTGGAGAGAATTAAGCG+TGG 0.736726 2_4:-9435519 Msa0313930:CDS
ACGGTGGTGTGAAAGAATCG+TGG 0.749435 2_4:+9436399 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAAAAAGTTTAATAC+AGG + chr2_4:9433087-9433106 None:intergenic 10.0%
!! TTTATAATACATTTATAGTT+AGG - chr2_4:9435500-9435519 Msa0313930:CDS 10.0%
!!! AATAAGTTTATTTTTGGTTT+AGG - chr2_4:9432568-9432587 Msa0313930:intron 15.0%
!!! TTTGATTTTATATCATTTGA+AGG + chr2_4:9433922-9433941 None:intergenic 15.0%
!! TAAATTATGTTTATTGAACT+GGG + chr2_4:9435037-9435056 None:intergenic 15.0%
!! TTCAATAAACATAATTTAGT+GGG - chr2_4:9435039-9435058 Msa0313930:intron 15.0%
!! TGTATTATAAATAAGTAAAG+TGG + chr2_4:9435491-9435510 None:intergenic 15.0%
!! GAAATAAACATTAAAACATA+TGG + chr2_4:9435634-9435653 None:intergenic 15.0%
!!! ATTTTGTATAATGATAAACA+TGG - chr2_4:9435828-9435847 Msa0313930:CDS 15.0%
!! AAGATATAGAAAAGGTTAAA+CGG + chr2_4:9431344-9431363 None:intergenic 20.0%
!! AAGAGAAAAAGATATAGAAA+AGG + chr2_4:9431352-9431371 None:intergenic 20.0%
!!! TACGATTAAGAAAAAGTATA+AGG - chr2_4:9431677-9431696 Msa0313930:intron 20.0%
!!! TTTGTTTTTTAATGAACGAA+TGG - chr2_4:9432480-9432499 Msa0313930:intron 20.0%
!!! TGCTTCAATAAGTTTATTTT+TGG - chr2_4:9432562-9432581 Msa0313930:intron 20.0%
!! AATTAAAATATACTAGCAAG+TGG - chr2_4:9432681-9432700 Msa0313930:intron 20.0%
!!! TGTGTAATTTTACTTTTAGA+TGG - chr2_4:9433030-9433049 Msa0313930:intron 20.0%
!! TACATGTAAATAGTTCAAAT+AGG - chr2_4:9433832-9433851 Msa0313930:intron 20.0%
!! ATTCTATAAAAACATCTGTT+AGG - chr2_4:9434518-9434537 Msa0313930:intron 20.0%
!! TTCTATAAAAACATCTGTTA+GGG - chr2_4:9434519-9434538 Msa0313930:intron 20.0%
!! ATGATTAATAACTACAGAAT+TGG + chr2_4:9434761-9434780 None:intergenic 20.0%
!! TTCTGTAGTTATTAATCATT+TGG - chr2_4:9434762-9434781 Msa0313930:intron 20.0%
!! CTAAATTATGTTTATTGAAC+TGG + chr2_4:9435038-9435057 None:intergenic 20.0%
!! GTTCAATAAACATAATTTAG+TGG - chr2_4:9435038-9435057 Msa0313930:intron 20.0%
!!! TATTTCTAAATGCTAAACAT+GGG + chr2_4:9435890-9435909 None:intergenic 20.0%
!!! ATATTTCTAAATGCTAAACA+TGG + chr2_4:9435891-9435910 None:intergenic 20.0%
!! GTTGCTGAATTAATTTATAA+GGG + chr2_4:9436472-9436491 None:intergenic 20.0%
!! AGTTGCTGAATTAATTTATA+AGG + chr2_4:9436473-9436492 None:intergenic 20.0%
!!! ATGGTGTTTTGAATTCTAAT+TGG - chr2_4:9431727-9431746 Msa0313930:intron 25.0%
! TATCAAATCACAAGCTAAAA+GGG + chr2_4:9432424-9432443 Msa0313940:intron 25.0%
! TTATCAAATCACAAGCTAAA+AGG + chr2_4:9432425-9432444 Msa0313940:intron 25.0%
! TTATACTGTTATGCATGATA+GGG - chr2_4:9432505-9432524 Msa0313930:intron 25.0%
! TTGGTTTAGGAAAATAAATG+TGG - chr2_4:9432581-9432600 Msa0313930:intron 25.0%
!! AATGAATGAATGCTTTTGAT+TGG - chr2_4:9432639-9432658 Msa0313930:intron 25.0%
!! TATAGTCGTTTAAGACTTTA+AGG - chr2_4:9432788-9432807 Msa0313930:intron 25.0%
!! ATAGTCGTTTAAGACTTTAA+GGG - chr2_4:9432789-9432808 Msa0313930:intron 25.0%
! CACAAAACATAAAGAACTAA+AGG + chr2_4:9432888-9432907 Msa0313940:intron 25.0%
!!! CTTTAGTTCTTTATGTTTTG+TGG - chr2_4:9432886-9432905 Msa0313930:intron 25.0%
! ACACACAACAATATCATATT+TGG - chr2_4:9432917-9432936 Msa0313930:intron 25.0%
! ACAACACAAATATTTGTCTT+AGG + chr2_4:9433355-9433374 None:intergenic 25.0%
! CTCGATTTACAGAAAAATTA+AGG + chr2_4:9433385-9433404 None:intergenic 25.0%
!!! AGTTCATTTTGAAGCTTTAA+TGG - chr2_4:9433403-9433422 Msa0313930:intron 25.0%
!!! GTTCATTTTGAAGCTTTAAT+GGG - chr2_4:9433404-9433423 Msa0313930:intron 25.0%
!!! TTCATTTTGAAGCTTTAATG+GGG - chr2_4:9433405-9433424 Msa0313930:intron 25.0%
!! GTATCATACATGTATTTTCA+TGG - chr2_4:9433470-9433489 Msa0313930:intron 25.0%
!!! GAGTGTAATTGTTTTTATTC+CGG - chr2_4:9433550-9433569 Msa0313930:intron 25.0%
! TCTTTCATGTATGAATATAG+TGG - chr2_4:9433629-9433648 Msa0313930:intron 25.0%
! CTTTCATGTATGAATATAGT+GGG - chr2_4:9433630-9433649 Msa0313930:intron 25.0%
! TTTCATGTATGAATATAGTG+GGG - chr2_4:9433631-9433650 Msa0313930:intron 25.0%
!! TGACACTGAAATATTTTCAA+AGG - chr2_4:9433884-9433903 Msa0313930:intron 25.0%
! TCTATAAAAACATCTGTTAG+GGG - chr2_4:9434520-9434539 Msa0313930:intron 25.0%
!!! CGTGATTTTTAAAAGAGATT+TGG - chr2_4:9434602-9434621 Msa0313930:intron 25.0%
!! TTTTTATCAAAATGTCAGTG+TGG + chr2_4:9434929-9434948 None:intergenic 25.0%
!!! CATTTTGATAAAAAGCTGTA+AGG - chr2_4:9434935-9434954 Msa0313930:intron 25.0%
! TATTGAATATCCAAGTATCA+GGG + chr2_4:9434966-9434985 None:intergenic 25.0%
! TTATTGAATATCCAAGTATC+AGG + chr2_4:9434967-9434986 None:intergenic 25.0%
!!! ATAGGGTAAGTTTTAATTAG+AGG + chr2_4:9435011-9435030 None:intergenic 25.0%
! TTTATTGAACTGGGTATATA+GGG + chr2_4:9435028-9435047 None:intergenic 25.0%
! ATAAACATAATTTAGTGGGA+TGG - chr2_4:9435043-9435062 Msa0313930:intron 25.0%
! ACTATACAATTTCTTTCACT+TGG + chr2_4:9435148-9435167 None:intergenic 25.0%
! AGTGAAAGAAATTGTATAGT+TGG - chr2_4:9435148-9435167 Msa0313930:intron 25.0%
! GTGAAAGAAATTGTATAGTT+GGG - chr2_4:9435149-9435168 Msa0313930:intron 25.0%
!!! TTTTGTTTTCTGTTGCTATT+TGG - chr2_4:9435175-9435194 Msa0313930:intron 25.0%
!!! GAAAACCTGTGTTTTAATTT+AGG + chr2_4:9435557-9435576 None:intergenic 25.0%
! TTGTATAATGATAAACATGG+AGG - chr2_4:9435831-9435850 Msa0313930:CDS 25.0%
! GTTGGAATTGTATTTCAATT+GGG + chr2_4:9435865-9435884 None:intergenic 25.0%
!!! TCAAAGGATTTATGCTTTTT+AGG - chr2_4:9435984-9436003 Msa0313930:CDS 25.0%
!! AAACCACATCTTTTTCTAAA+CGG + chr2_4:9436022-9436041 None:intergenic 25.0%
!! TTTCATTGTTGTAACTTGTA+AGG - chr2_4:9436172-9436191 Msa0313930:CDS 25.0%
! CTCTAAATAGAAATTTATCG+AGG - chr2_4:9436399-9436418 Msa0313930:CDS 25.0%
!! AATTTATCGAGGAGTAATTT+TGG - chr2_4:9436410-9436429 Msa0313930:CDS 25.0%
AGAGAGAATGAGAAGAAATT+GGG + chr2_4:9431386-9431405 None:intergenic 30.0%
AGTATAAGGTTGAAAAAGCT+AGG - chr2_4:9431691-9431710 Msa0313930:intron 30.0%
GTATAAGGTTGAAAAAGCTA+GGG - chr2_4:9431692-9431711 Msa0313930:intron 30.0%
!!! CTAATTGGCCTTTTTTTGAA+CGG - chr2_4:9431742-9431761 Msa0313930:intron 30.0%
ACATCTAACCGTTCAAAAAA+AGG + chr2_4:9431753-9431772 None:intergenic 30.0%
! AACTTCTTAGCACTGAAATT+AGG + chr2_4:9431786-9431805 None:intergenic 30.0%
GAAGTTATCAATTTCTTCAC+CGG - chr2_4:9431800-9431819 Msa0313930:intron 30.0%
!!! TTATGGATGATGGGTATTTT+AGG - chr2_4:9431985-9432004 Msa0313930:intron 30.0%
!! TTTTAGGAGGAATTATTCTG+CGG - chr2_4:9432001-9432020 Msa0313930:intron 30.0%
ATCAAATCACAAGCTAAAAG+GGG + chr2_4:9432423-9432442 Msa0313940:intron 30.0%
AAAACAAAAACTGAGCAATG+CGG + chr2_4:9432462-9432481 Msa0313940:intron 30.0%
GTTATACTGTTATGCATGAT+AGG - chr2_4:9432504-9432523 Msa0313930:intron 30.0%
!!! TTTTGATTGGTTGTTTCTTG+TGG - chr2_4:9432652-9432671 Msa0313930:intron 30.0%
AGAACTAAAGGTTGTTGTAT+TGG + chr2_4:9432876-9432895 Msa0313940:intron 30.0%
! AGTTCTTTATGTTTTGTGGT+TGG - chr2_4:9432890-9432909 Msa0313930:intron 30.0%
TTGTTCTTGATTGACATTGA+TGG - chr2_4:9432991-9433010 Msa0313930:intron 30.0%
TGTTCTTGATTGACATTGAT+GGG - chr2_4:9432992-9433011 Msa0313930:intron 30.0%
!! TCTATAACCATTTTGCTGTA+AGG - chr2_4:9433137-9433156 Msa0313930:intron 30.0%
!! ATGGCAGTTTTGTATGTATT+TGG - chr2_4:9433448-9433467 Msa0313930:intron 30.0%
TCATACATGAAAGAACAACA+AGG + chr2_4:9433623-9433642 None:intergenic 30.0%
TTCATGTATGAATATAGTGG+GGG - chr2_4:9433632-9433651 Msa0313930:intron 30.0%
!! GGGTGTTACTATAAATACAA+GGG - chr2_4:9433652-9433671 Msa0313930:intron 30.0%
GAATATGTATATTTGACACG+AGG + chr2_4:9433726-9433745 None:intergenic 30.0%
TATCTAGCAAACATGTTTAG+TGG - chr2_4:9433796-9433815 Msa0313930:intron 30.0%
ATTATCTACATTCTCTTGCT+TGG + chr2_4:9433964-9433983 None:intergenic 30.0%
CCTGCATATAGATATCTAAT+AGG + chr2_4:9434241-9434260 None:intergenic 30.0%
CCTATTAGATATCTATATGC+AGG - chr2_4:9434238-9434257 Msa0313930:intron 30.0%
TGAACCTTCTTTATAAAGCT+TGG - chr2_4:9434402-9434421 Msa0313930:intron 30.0%
! AACTCCAAGCTTTATAAAGA+AGG + chr2_4:9434409-9434428 None:intergenic 30.0%
TTATTAGAGTACAACTCCTA+TGG + chr2_4:9434437-9434456 None:intergenic 30.0%
TTCAAGAAAACAAAGCAACA+TGG + chr2_4:9434488-9434507 None:intergenic 30.0%
CTATAAAAACATCTGTTAGG+GGG - chr2_4:9434521-9434540 Msa0313930:intron 30.0%
TATAAAAACATCTGTTAGGG+GGG - chr2_4:9434522-9434541 Msa0313930:intron 30.0%
TTCTTTCTCTTTCCAACTAT+TGG + chr2_4:9434565-9434584 None:intergenic 30.0%
AATCACGCATATACTTTCTT+TGG + chr2_4:9434589-9434608 None:intergenic 30.0%
ATGATTTATCTCTTCATGAC+AGG - chr2_4:9434631-9434650 Msa0313930:intron 30.0%
GTTTATTGAACTGGGTATAT+AGG + chr2_4:9435029-9435048 None:intergenic 30.0%
! CTTCTTTTTCCTCTTGATTA+TGG - chr2_4:9435207-9435226 Msa0313930:intron 30.0%
! GAAAAGATGAAGTGTTTGAA+TGG - chr2_4:9435367-9435386 Msa0313930:intron 30.0%
GTGTTTGAATGGAAATTTGA+TGG - chr2_4:9435378-9435397 Msa0313930:intron 30.0%
! TGGAAATTTGATGGTAGTTA+TGG - chr2_4:9435387-9435406 Msa0313930:intron 30.0%
TGATGGTAGTTATGGTATAT+TGG - chr2_4:9435395-9435414 Msa0313930:intron 30.0%
AGTCTCCTAAATTAAAACAC+AGG - chr2_4:9435549-9435568 Msa0313930:CDS 30.0%
! CATGTTTGGTTTCTTTCTAT+GGG - chr2_4:9435593-9435612 Msa0313930:CDS 30.0%
! GTTTCTTTCTATGGGTTTTA+TGG - chr2_4:9435601-9435620 Msa0313930:CDS 30.0%
! GCTATACCATATATGTGTTT+TGG - chr2_4:9435659-9435678 Msa0313930:CDS 30.0%
!!! ACCATATATGTGTTTTGGAA+AGG - chr2_4:9435664-9435683 Msa0313930:CDS 30.0%
TCCTTTCCAAAACACATATA+TGG + chr2_4:9435668-9435687 None:intergenic 30.0%
GGTTGGAATTGTATTTCAAT+TGG + chr2_4:9435866-9435885 None:intergenic 30.0%
ATTCCGTTTAGAAAAAGATG+TGG - chr2_4:9436016-9436035 Msa0313930:CDS 30.0%
TTTACTTCAAGTCAAAAGAG+AGG + chr2_4:9436090-9436109 None:intergenic 30.0%
! TAACTTGTAAGGATTTATCG+TGG - chr2_4:9436183-9436202 Msa0313930:CDS 30.0%
!!! TCATGTTTTGGTTATGATCA+CGG - chr2_4:9436337-9436356 Msa0313930:CDS 30.0%
AACTGTACTTAAGCCTAATT+CGG - chr2_4:9436489-9436508 Msa0313930:five_prime_UTR 30.0%
GAGAGAATGAGAAGAAATTG+GGG + chr2_4:9431385-9431404 None:intergenic 35.0%
GAGAGAGAATGAGAAGAAAT+TGG + chr2_4:9431387-9431406 None:intergenic 35.0%
AAAGAATCGTGGTGAAAATC+CGG + chr2_4:9431441-9431460 None:intergenic 35.0%
GTAATCTTCGTCAGAAAGAT+TGG - chr2_4:9431568-9431587 Msa0313930:three_prime_UTR 35.0%
!!! GAACGGTTAGATGTTTTGAT+TGG - chr2_4:9431759-9431778 Msa0313930:intron 35.0%
AATTTCCGATGAGGAATCAA+CGG + chr2_4:9431858-9431877 None:intergenic 35.0%
GAATTAGCAAATTTCCGATG+AGG + chr2_4:9431867-9431886 None:intergenic 35.0%
!! CATCGGAAATTTGCTAATTC+TGG - chr2_4:9431867-9431886 Msa0313930:intron 35.0%
TTATTCATCACCTGCAATTG+CGG - chr2_4:9431893-9431912 Msa0313930:intron 35.0%
TCATATTTGGCAGTAAACTC+AGG - chr2_4:9432930-9432949 Msa0313930:intron 35.0%
CATATTTGGCAGTAAACTCA+GGG - chr2_4:9432931-9432950 Msa0313930:intron 35.0%
TGATTGACATTGATGGGATT+TGG - chr2_4:9432998-9433017 Msa0313930:intron 35.0%
GCATTTACCTTACAGCAAAA+TGG + chr2_4:9433147-9433166 None:intergenic 35.0%
GTACATAAGAGCTAAGACAT+TGG + chr2_4:9433173-9433192 None:intergenic 35.0%
! GTCTTAGCTCTTATGTACAA+TGG - chr2_4:9433175-9433194 Msa0313930:intron 35.0%
!! AAGCTTTAATGGGGTTTTGT+TGG - chr2_4:9433414-9433433 Msa0313930:intron 35.0%
!! TTTGTTGGTTTGTCTTGTGA+TGG - chr2_4:9433429-9433448 Msa0313930:intron 35.0%
!! GGGGTGTTACTATAAATACA+AGG - chr2_4:9433651-9433670 Msa0313930:intron 35.0%
! CTTGCTTGGATATAGACTTT+TGG + chr2_4:9433950-9433969 None:intergenic 35.0%
! TGCATATTGTGACGTTGATT+GGG + chr2_4:9434154-9434173 None:intergenic 35.0%
!! AAGGTGGTAGCTTTAGATTT+AGG - chr2_4:9434200-9434219 Msa0313930:intron 35.0%
ACTAACTGACCATGTTAACT+AGG - chr2_4:9434302-9434321 Msa0313930:intron 35.0%
TGACCATGTTAACTAGGAAT+GGG - chr2_4:9434308-9434327 Msa0313930:intron 35.0%
GCTTTATAAAGAAGGTTCAG+AGG + chr2_4:9434401-9434420 None:intergenic 35.0%
TAGAAGGATAGTCCAATAGT+TGG - chr2_4:9434550-9434569 Msa0313930:intron 35.0%
GAATGAAACCTAACTGAACT+TGG + chr2_4:9434739-9434758 None:intergenic 35.0%
CATAATTTAGTGGGATGGTT+TGG - chr2_4:9435048-9435067 Msa0313930:intron 35.0%
GCTACTTATCCATAATCAAG+AGG + chr2_4:9435219-9435238 None:intergenic 35.0%
!! GTTTTGACAAGTAGCTGATA+CGG - chr2_4:9435265-9435284 Msa0313930:intron 35.0%
TAACATCAGAGAGATGAGAT+TGG - chr2_4:9435295-9435314 Msa0313930:intron 35.0%
! ATGTCACTTGTCTTGATCAT+GGG - chr2_4:9435450-9435469 Msa0313930:intron 35.0%
ATAAGTAAAGTGGAACTGTC+AGG + chr2_4:9435481-9435500 None:intergenic 35.0%
! GGTTTTCATGAATGTTATCG+CGG - chr2_4:9435570-9435589 Msa0313930:CDS 35.0%
! GCATGTTTGGTTTCTTTCTA+TGG - chr2_4:9435592-9435611 Msa0313930:CDS 35.0%
AGTAGTTATTGTGTGATACC+TGG - chr2_4:9435689-9435708 Msa0313930:CDS 35.0%
TTCTAAATGCTAAACATGGG+AGG + chr2_4:9435887-9435906 None:intergenic 35.0%
AGCAATCAGACAAGTCAATA+AGG + chr2_4:9435926-9435945 None:intergenic 35.0%
ATGGATATGTTCTTGCTCAA+AGG - chr2_4:9435968-9435987 Msa0313930:CDS 35.0%
! ACTTACAACATGTGTTTCTG+CGG - chr2_4:9436227-9436246 Msa0313930:CDS 35.0%
!!! CATGTTTTGGTTATGATCAC+GGG - chr2_4:9436338-9436357 Msa0313930:CDS 35.0%
ACTGTACTTAAGCCTAATTC+GGG - chr2_4:9436490-9436509 Msa0313930:five_prime_UTR 35.0%
TTAAACGGCGTGTGATTACA+CGG + chr2_4:9431329-9431348 None:intergenic 40.0%
CATCGGAGAAATTAGGGTTA+GGG + chr2_4:9431418-9431437 None:intergenic 40.0%
CTTTCTGACGAAGATTACCA+CGG + chr2_4:9431566-9431585 None:intergenic 40.0%
! ATCTGTGCGATGAGTTTTCT+TGG + chr2_4:9431634-9431653 None:intergenic 40.0%
GGTTGAAAAAGCTAGGGTTA+CGG - chr2_4:9431698-9431717 Msa0313930:intron 40.0%
GTTATCAATTTCTTCACCGG+TGG - chr2_4:9431803-9431822 Msa0313930:intron 40.0%
!! CGGAAATTTGCTAATTCTGG+TGG - chr2_4:9431870-9431889 Msa0313930:intron 40.0%
GCAGAATAATTCCTCTTCTG+CGG + chr2_4:9431942-9431961 None:intergenic 40.0%
GAAGAGGAATTATTCTGCTG+TGG - chr2_4:9431944-9431963 Msa0313930:intron 40.0%
!!! TGGATGATGGGTATTTTAGG+AGG - chr2_4:9431988-9432007 Msa0313930:intron 40.0%
AAGTGGATGAAGGGGATAAA+GGG - chr2_4:9432138-9432157 Msa0313930:intron 40.0%
TGGTGAAATGTATGAGAGAG+TGG - chr2_4:9432202-9432221 Msa0313930:intron 40.0%
!! TGGTGGATTTGGAGAAACAA+AGG - chr2_4:9432246-9432265 Msa0313930:intron 40.0%
CTAAAGATCTTGAAGTGCAG+AGG - chr2_4:9432279-9432298 Msa0313930:intron 40.0%
TATGGATACTCAAGTTCAGC+TGG - chr2_4:9432313-9432332 Msa0313930:intron 40.0%
ATTAAGCGTGGAAAACCATC+TGG - chr2_4:9432341-9432360 Msa0313930:intron 40.0%
TTAAGCGTGGAAAACCATCT+GGG - chr2_4:9432342-9432361 Msa0313930:intron 40.0%
! GTTATGCATGATAGGGCTTT+TGG - chr2_4:9432512-9432531 Msa0313930:intron 40.0%
AACAACCAGCAAGCCAAATT+GGG + chr2_4:9432976-9432995 Msa0313940:CDS 40.0%
GCTCTTATGTACAATGGTCT+AGG - chr2_4:9433181-9433200 Msa0313930:intron 40.0%
CTTGCTAAGAATGCTTGTCA+AGG + chr2_4:9433309-9433328 None:intergenic 40.0%
!! TCAACAGCAGCTTATTTCTG+TGG - chr2_4:9433503-9433522 Msa0313930:intron 40.0%
CAAATCAAGTCAGTCTACAC+CGG + chr2_4:9433572-9433591 None:intergenic 40.0%
AGTAGTCCTTTCACTTTGGT+TGG - chr2_4:9433857-9433876 Msa0313930:intron 40.0%
CAATCACCAACCAAAGTGAA+AGG + chr2_4:9433866-9433885 None:intergenic 40.0%
! GCATATTGTGACGTTGATTG+GGG + chr2_4:9434153-9434172 None:intergenic 40.0%
GTGCATATTGTGACGTTGAT+TGG + chr2_4:9434155-9434174 None:intergenic 40.0%
AATATGCACATATGCACCGA+GGG - chr2_4:9434166-9434185 Msa0313930:intron 40.0%
TTAGATTTAGGCCCAAAGAG+AGG - chr2_4:9434212-9434231 Msa0313930:intron 40.0%
TAGATTTAGGCCCAAAGAGA+GGG - chr2_4:9434213-9434232 Msa0313930:intron 40.0%
CTAATAGGTACCCTCTCTTT+GGG + chr2_4:9434226-9434245 None:intergenic 40.0%
TCTAATAGGTACCCTCTCTT+TGG + chr2_4:9434227-9434246 None:intergenic 40.0%
AGCAAGCAAATGAGCTTCAA+GGG - chr2_4:9434267-9434286 Msa0313930:intron 40.0%
CTGACCATGTTAACTAGGAA+TGG - chr2_4:9434307-9434326 Msa0313930:intron 40.0%
TCTCCCATTCCTAGTTAACA+TGG + chr2_4:9434314-9434333 None:intergenic 40.0%
GGTGATTTCACAACTTGAAC+TGG + chr2_4:9434467-9434486 None:intergenic 40.0%
TGTGTGAACCAAGTTCAGTT+AGG - chr2_4:9434728-9434747 Msa0313930:intron 40.0%
ATCGTACAAGACTCTAGCAT+TGG + chr2_4:9434826-9434845 None:intergenic 40.0%
TCAGTGTGGAAGAAAGACTA+AGG + chr2_4:9434915-9434934 None:intergenic 40.0%
! GGCTTTTGCTGAAATAGTGA+TGG - chr2_4:9435316-9435335 Msa0313930:intron 40.0%
TGAACCCAATCCAACTGAAT+CGG + chr2_4:9435431-9435450 None:intergenic 40.0%
! CATGTCACTTGTCTTGATCA+TGG - chr2_4:9435449-9435468 Msa0313930:intron 40.0%
!!! TGTGTGATACCTGGTTTTGA+TGG - chr2_4:9435698-9435717 Msa0313930:CDS 40.0%
GCACTAATACCATCAAAACC+AGG + chr2_4:9435710-9435729 None:intergenic 40.0%
ACACTTCTGTTGCATGATAC+TGG + chr2_4:9435807-9435826 None:intergenic 40.0%
AAATGCTAAACATGGGAGGT+TGG + chr2_4:9435883-9435902 None:intergenic 40.0%
! CACATGTTGTAAGTTGAGTG+AGG + chr2_4:9436221-9436240 None:intergenic 40.0%
! TGATCGGAACACTCATGTTT+TGG - chr2_4:9436325-9436344 Msa0313930:CDS 40.0%
TTCAGCTGATACTGTCATGA+GGG - chr2_4:9436373-9436392 Msa0313930:CDS 40.0%
GCATCGGAGAAATTAGGGTT+AGG + chr2_4:9431419-9431438 None:intergenic 45.0%
AACCCTAATTTCTCCGATGC+CGG - chr2_4:9431419-9431438 Msa0313930:three_prime_UTR 45.0%
! ATCCGGCATCGGAGAAATTA+GGG + chr2_4:9431424-9431443 None:intergenic 45.0%
! AATCCGGCATCGGAGAAATT+AGG + chr2_4:9431425-9431444 None:intergenic 45.0%
GATGCTGTTAACGCTCTTCA+TGG - chr2_4:9431603-9431622 Msa0313930:intron 45.0%
GCTAGGGTTACGGAATCTAA+TGG - chr2_4:9431708-9431727 Msa0313930:intron 45.0%
ATCAATTTCTTCACCGGTGG+CGG - chr2_4:9431806-9431825 Msa0313930:intron 45.0%
!! CTCTTCCGTTGATTCCTCAT+CGG - chr2_4:9431850-9431869 Msa0313930:intron 45.0%
GAATTATTCTGCTGTGGCTG+CGG - chr2_4:9431950-9431969 Msa0313930:intron 45.0%
! AGCTGATGAGGATGATGATG+AGG - chr2_4:9432049-9432068 Msa0313930:intron 45.0%
! GGATGATGATGAGGATGATG+AGG - chr2_4:9432058-9432077 Msa0313930:intron 45.0%
! TGATGATGAGGATGATGAGG+TGG - chr2_4:9432061-9432080 Msa0313930:intron 45.0%
TGGAAGTAGAGGAAGAGGAA+GGG - chr2_4:9432105-9432124 Msa0313930:intron 45.0%
GAAGTGGATGAAGGGGATAA+AGG - chr2_4:9432137-9432156 Msa0313930:intron 45.0%
AAGGGGATAAAGGGAGAGAA+GGG - chr2_4:9432147-9432166 Msa0313930:intron 45.0%
GAGTGGAAGAACAGAAACTG+AGG - chr2_4:9432219-9432238 Msa0313930:intron 45.0%
AGAACAGAAACTGAGGCAGA+TGG - chr2_4:9432226-9432245 Msa0313930:intron 45.0%
GCAGAGGATGCAGATGTTTA+TGG - chr2_4:9432295-9432314 Msa0313930:intron 45.0%
GGAAAACCATCTGGGTCTAA+TGG - chr2_4:9432350-9432369 Msa0313930:intron 45.0%
ATCTCACCATTAGACCCAGA+TGG + chr2_4:9432359-9432378 Msa0313940:intron 45.0%
CAAGTGGTGTTCTAGTGCTA+TGG - chr2_4:9432697-9432716 Msa0313930:intron 45.0%
ATTTGGCAGTAAACTCAGGG+TGG - chr2_4:9432934-9432953 Msa0313930:intron 45.0%
GAACAACCAGCAAGCCAAAT+TGG + chr2_4:9432977-9432996 Msa0313940:CDS 45.0%
!! CGGTGTAGACTGACTTGATT+TGG - chr2_4:9433570-9433589 Msa0313930:intron 45.0%
GGTCAGTAGTCCTTTCACTT+TGG - chr2_4:9433853-9433872 Msa0313930:intron 45.0%
TTCCACCATGCTGAGTTTGT+GGG + chr2_4:9434089-9434108 None:intergenic 45.0%
TGGTGGAAGAAAGAACCCAA+AGG - chr2_4:9434101-9434120 Msa0313930:intron 45.0%
ATGACAGGCAGTCTACCTTT+GGG + chr2_4:9434119-9434138 None:intergenic 45.0%
CAATATGCACATATGCACCG+AGG - chr2_4:9434165-9434184 Msa0313930:intron 45.0%
CAGCAAGCAAATGAGCTTCA+AGG - chr2_4:9434266-9434285 Msa0313930:intron 45.0%
GCAAGCAAATGAGCTTCAAG+GGG - chr2_4:9434268-9434287 Msa0313930:intron 45.0%
CAAATGAGCTTCAAGGGGTT+GGG - chr2_4:9434273-9434292 Msa0313930:intron 45.0%
ACTATGTACAGATCGGCAGT+TGG + chr2_4:9434364-9434383 None:intergenic 45.0%
AACTGCCGATCTGTACATAG+TGG - chr2_4:9434363-9434382 Msa0313930:intron 45.0%
ACTGCCGATCTGTACATAGT+GGG - chr2_4:9434364-9434383 Msa0313930:intron 45.0%
AGACCCCACTATGTACAGAT+CGG + chr2_4:9434371-9434390 None:intergenic 45.0%
AGCTTGGAGTTAGCTACCAT+AGG - chr2_4:9434418-9434437 Msa0313930:intron 45.0%
! TGTTAGGGGGGTTGATTAGA+AGG - chr2_4:9434534-9434553 Msa0313930:intron 45.0%
CTCTTCATGACAGGATACTG+TGG - chr2_4:9434640-9434659 Msa0313930:intron 45.0%
CAACCTTATAGAGCGAAACC+AGG - chr2_4:9434682-9434701 Msa0313930:intron 45.0%
CTGTATCTATCAGCTGTGCT+GGG - chr2_4:9434847-9434866 Msa0313930:intron 45.0%
! ACAGTACTTATGGTGGTGTG+TGG + chr2_4:9434885-9434904 None:intergenic 45.0%
CAACAGGACAGTACTTATGG+TGG + chr2_4:9434892-9434911 None:intergenic 45.0%
AGGCAACAGGACAGTACTTA+TGG + chr2_4:9434895-9434914 None:intergenic 45.0%
GGAAGAAAGACTAAGGCAAC+AGG + chr2_4:9434908-9434927 None:intergenic 45.0%
TAAGGCTGATCCCTGATACT+TGG - chr2_4:9434953-9434972 Msa0313930:intron 45.0%
TTGCACCTCGATACCAGTTA+CGG + chr2_4:9435103-9435122 None:intergenic 45.0%
TCGAGGTGCAATGCAAATGT+AGG - chr2_4:9435112-9435131 Msa0313930:intron 45.0%
TTGCTGAAATAGTGATGGCC+TGG - chr2_4:9435321-9435340 Msa0313930:intron 45.0%
TGTCTTTCACCCGATTCAGT+TGG - chr2_4:9435418-9435437 Msa0313930:intron 45.0%
TTCACCCGATTCAGTTGGAT+TGG - chr2_4:9435423-9435442 Msa0313930:intron 45.0%
TCACCCGATTCAGTTGGATT+GGG - chr2_4:9435424-9435443 Msa0313930:intron 45.0%
GAACCCAATCCAACTGAATC+GGG + chr2_4:9435430-9435449 None:intergenic 45.0%
AGTAAAGTGGAACTGTCAGG+AGG + chr2_4:9435478-9435497 None:intergenic 45.0%
GAGACTGAAAAGCTCGAAGA+TGG + chr2_4:9435535-9435554 None:intergenic 45.0%
GAATGTTATCGCGGCATGTT+TGG - chr2_4:9435579-9435598 Msa0313930:CDS 45.0%
GTTCAACCAATGACGCAACA+GGG + chr2_4:9435732-9435751 None:intergenic 45.0%
TGTTCAACCAATGACGCAAC+AGG + chr2_4:9435733-9435752 None:intergenic 45.0%
CTCATCCAAGTCTGTTGTGT+TGG - chr2_4:9435767-9435786 Msa0313930:CDS 45.0%
TCATGCCAACACAACAGACT+TGG + chr2_4:9435775-9435794 None:intergenic 45.0%
! CGCTTGATACAGTAGCTCTA+TGG - chr2_4:9435949-9435968 Msa0313930:CDS 45.0%
!! AATGGTTCGGTGATGGTGAT+CGG - chr2_4:9436309-9436328 Msa0313930:CDS 45.0%
CTTCAGCTGATACTGTCATG+AGG - chr2_4:9436372-9436391 Msa0313930:CDS 45.0%
!!! CAAAAATATAATTTTTTTAA+TGG - chr2_4:9433207-9433226 Msa0313930:intron 5.0%
TCGTGGTGAAAATCCGGCAT+CGG + chr2_4:9431435-9431454 None:intergenic 50.0%
ACGGTGGTGTGAAAGAATCG+TGG + chr2_4:9431452-9431471 None:intergenic 50.0%
TGACCAACAATCCTCGCGAA+CGG + chr2_4:9431487-9431506 None:intergenic 50.0%
TTCCACTCTCGTCGATGCAT+GGG - chr2_4:9431518-9431537 Msa0313930:three_prime_UTR 50.0%
CGGTATCTTGAACTCAACCG+TGG - chr2_4:9431546-9431565 Msa0313930:three_prime_UTR 50.0%
GTCGAATGTACCGCAATTGC+AGG + chr2_4:9431906-9431925 None:intergenic 50.0%
ACGGCTACGGTTATGGATGA+TGG - chr2_4:9431975-9431994 Msa0313930:intron 50.0%
CGGCTACGGTTATGGATGAT+GGG - chr2_4:9431976-9431995 Msa0313930:intron 50.0%
TGATGAGGATGATGAGGTGG+AGG - chr2_4:9432064-9432083 Msa0313930:intron 50.0%
TGATGAGGTGGAGGAAGTTG+AGG - chr2_4:9432073-9432092 Msa0313930:intron 50.0%
AGAGGTGGAAGTAGAGGAAG+AGG - chr2_4:9432100-9432119 Msa0313930:intron 50.0%
GTGGAAGTAGAGGAAGAGGA+AGG - chr2_4:9432104-9432123 Msa0313930:intron 50.0%
AAGTAGAGGAAGAGGAAGGG+AGG - chr2_4:9432108-9432127 Msa0313930:intron 50.0%
AGTAGAGGAAGAGGAAGGGA+GGG - chr2_4:9432109-9432128 Msa0313930:intron 50.0%
GAAGGGGATAAAGGGAGAGA+AGG - chr2_4:9432146-9432165 Msa0313930:intron 50.0%
AAGGGAGAGAAGGGATGAAG+AGG - chr2_4:9432156-9432175 Msa0313930:intron 50.0%
GAGAGAAGGGATGAAGAGGT+TGG - chr2_4:9432160-9432179 Msa0313930:intron 50.0%
! GCGAAGGCGATAGAGAGTTT+TGG - chr2_4:9432182-9432201 Msa0313930:intron 50.0%
ACAGAAACTGAGGCAGATGG+TGG - chr2_4:9432229-9432248 Msa0313930:intron 50.0%
!! ACTGAGGCAGATGGTGGATT+TGG - chr2_4:9432235-9432254 Msa0313930:intron 50.0%
CAGCTGGAGAGAATTAAGCG+TGG - chr2_4:9432329-9432348 Msa0313930:intron 50.0%
! TGATAGGGCTTTTGGACCTG+AGG - chr2_4:9432520-9432539 Msa0313930:intron 50.0%
! CTTTTGGACCTGAGGACAGT+GGG - chr2_4:9432528-9432547 Msa0313930:intron 50.0%
AGCCAAATTGGGTTCGGATC+TGG + chr2_4:9432965-9432984 Msa0313940:CDS 50.0%
CCAGCAAGCCAAATTGGGTT+CGG + chr2_4:9432971-9432990 Msa0313940:CDS 50.0%
ACTCACCCACAAACTCAGCA+TGG - chr2_4:9434081-9434100 Msa0313930:intron 50.0%
CTTCCACCATGCTGAGTTTG+TGG + chr2_4:9434090-9434109 None:intergenic 50.0%
GATGACAGGCAGTCTACCTT+TGG + chr2_4:9434120-9434139 None:intergenic 50.0%
AGGTAGACTGCCTGTCATCA+TGG - chr2_4:9434121-9434140 Msa0313930:intron 50.0%
ACCTTCATGTCAGTGTCCCT+CGG + chr2_4:9434185-9434204 None:intergenic 50.0%
GCAAATGAGCTTCAAGGGGT+TGG - chr2_4:9434272-9434291 Msa0313930:intron 50.0%
CTGCCGATCTGTACATAGTG+GGG - chr2_4:9434365-9434384 Msa0313930:intron 50.0%
AGGCCTGGTTTCGCTCTATA+AGG + chr2_4:9434688-9434707 None:intergenic 50.0%
TTATAGAGCGAAACCAGGCC+TGG - chr2_4:9434687-9434706 Msa0313930:intron 50.0%
CACAGACAGAGAGAACAACC+AGG + chr2_4:9434708-9434727 None:intergenic 50.0%
! CTTCGCCAATCTATGGGTTG+AGG + chr2_4:9434797-9434816 None:intergenic 50.0%
CTCAACCCATAGATTGGCGA+AGG - chr2_4:9434795-9434814 Msa0313930:intron 50.0%
CACAGCCTTCGCCAATCTAT+GGG + chr2_4:9434803-9434822 None:intergenic 50.0%
GCTGTATCTATCAGCTGTGC+TGG - chr2_4:9434846-9434865 Msa0313930:intron 50.0%
CAGCTGTGCTGGGTAAGTAA+AGG - chr2_4:9434857-9434876 Msa0313930:intron 50.0%
TGGATAAGTAGCTAGAGCGC+TGG - chr2_4:9435227-9435246 Msa0313930:intron 50.0%
!! AGCTAGAGCGCTGGAAAAGT+TGG - chr2_4:9435236-9435255 Msa0313930:intron 50.0%
!! GCTAGAGCGCTGGAAAAGTT+GGG - chr2_4:9435237-9435256 Msa0313930:intron 50.0%
TTAGTGCCCTGTTGCGTCAT+TGG - chr2_4:9435723-9435742 Msa0313930:CDS 50.0%
ATAGCTAGCCAAGCGAGCAA+TGG - chr2_4:9436291-9436310 Msa0313930:CDS 50.0%
TAGCCAAGCGAGCAATGGTT+CGG - chr2_4:9436296-9436315 Msa0313930:CDS 50.0%
TCTGTGTAGCAGCCCGAATT+AGG + chr2_4:9436505-9436524 None:intergenic 50.0%
AGCCAGTTCCCCCAATACAC+CGG - chr2_4:9431295-9431314 Msa0313930:three_prime_UTR 55.0%
TGATTACACGGTACGGTCGC+CGG + chr2_4:9431317-9431336 None:intergenic 55.0%
CGGCGTGTGATTACACGGTA+CGG + chr2_4:9431324-9431343 None:intergenic 55.0%
ACCAACAATCCTCGCGAACG+GGG + chr2_4:9431485-9431504 None:intergenic 55.0%
GACCAACAATCCTCGCGAAC+GGG + chr2_4:9431486-9431505 None:intergenic 55.0%
CTTCCACTCTCGTCGATGCA+TGG - chr2_4:9431517-9431536 Msa0313930:three_prime_UTR 55.0%
TCCACTCTCGTCGATGCATG+GGG - chr2_4:9431519-9431538 Msa0313930:three_prime_UTR 55.0%
GGAATCAACGGAAGAGCCAC+CGG + chr2_4:9431846-9431865 None:intergenic 55.0%
TGAGGTGGAGGAAGTTGAGG+AGG - chr2_4:9432076-9432095 Msa0313930:intron 55.0%
GGAGGAAGTTGAGGAGGAAG+AGG - chr2_4:9432082-9432101 Msa0313930:intron 55.0%
GGAAGTTGAGGAGGAAGAGG+TGG - chr2_4:9432085-9432104 Msa0313930:intron 55.0%
GGAGGAAGAGGTGGAAGTAG+AGG - chr2_4:9432094-9432113 Msa0313930:intron 55.0%
GTAGAGGAAGAGGAAGGGAG+GGG - chr2_4:9432110-9432129 Msa0313930:intron 55.0%
TAGAGGAAGAGGAAGGGAGG+GGG - chr2_4:9432111-9432130 Msa0313930:intron 55.0%
AGGGGGAGTGAAGTGGATGA+AGG - chr2_4:9432128-9432147 Msa0313930:intron 55.0%
GGGGGAGTGAAGTGGATGAA+GGG - chr2_4:9432129-9432148 Msa0313930:intron 55.0%
GGGGAGTGAAGTGGATGAAG+GGG - chr2_4:9432130-9432149 Msa0313930:intron 55.0%
AGGGATGAAGAGGTTGGCGA+AGG - chr2_4:9432166-9432185 Msa0313930:intron 55.0%
! GCTTTTGGACCTGAGGACAG+TGG - chr2_4:9432527-9432546 Msa0313930:intron 55.0%
CTGAGGACAGTGGGTCTCAA+GGG - chr2_4:9432537-9432556 Msa0313930:intron 55.0%
CGCCAGATCCGAACCCAATT+TGG - chr2_4:9432960-9432979 Msa0313930:intron 55.0%
!! CCGAACCCAATTTGGCTTGC+TGG - chr2_4:9432968-9432987 Msa0313930:intron 55.0%
CACCCACAAACTCAGCATGG+TGG - chr2_4:9434084-9434103 Msa0313930:intron 55.0%
GGGGTTCAGACCATGATGAC+AGG + chr2_4:9434134-9434153 None:intergenic 55.0%
ACCGAGGGACACTGACATGA+AGG - chr2_4:9434181-9434200 Msa0313930:intron 55.0%
GAGGGACACTGACATGAAGG+TGG - chr2_4:9434184-9434203 Msa0313930:intron 55.0%
ACAGAGAGAACAACCAGGCC+TGG + chr2_4:9434703-9434722 None:intergenic 55.0%
GCACAGCCTTCGCCAATCTA+TGG + chr2_4:9434804-9434823 None:intergenic 55.0%
! GATACCAGTTACGGCTGGCT+GGG + chr2_4:9435094-9435113 None:intergenic 55.0%
ACCTCGATACCAGTTACGGC+TGG + chr2_4:9435099-9435118 None:intergenic 55.0%
AGTGATGGCCTGGATCCTTG+TGG - chr2_4:9435331-9435350 Msa0313930:intron 55.0%
ATGGCCTGGATCCTTGTGGA+CGG - chr2_4:9435335-9435354 Msa0313930:intron 55.0%
AGAACCGTCCACAAGGATCC+AGG + chr2_4:9435342-9435361 None:intergenic 55.0%
TCCTTGTGGACGGTTCTCTG+TGG - chr2_4:9435345-9435364 Msa0313930:intron 55.0%
TCCACAGAGAACCGTCCACA+AGG + chr2_4:9435349-9435368 None:intergenic 55.0%
TCACCGAACCATTGCTCGCT+TGG + chr2_4:9436302-9436321 None:intergenic 55.0%
!! AGCGAGCAATGGTTCGGTGA+TGG - chr2_4:9436302-9436321 Msa0313930:CDS 55.0%
TACGGTCGCCGGTGTATTGG+GGG + chr2_4:9431306-9431325 None:intergenic 60.0%
GTACGGTCGCCGGTGTATTG+GGG + chr2_4:9431307-9431326 None:intergenic 60.0%
GGTACGGTCGCCGGTGTATT+GGG + chr2_4:9431308-9431327 None:intergenic 60.0%
ACAATCCTCGCGAACGGGGA+CGG + chr2_4:9431481-9431500 None:intergenic 60.0%
TCCCCGTTCGCGAGGATTGT+TGG - chr2_4:9431481-9431500 Msa0313930:three_prime_UTR 60.0%
! ACCCCATGCATCGACGAGAG+TGG + chr2_4:9431523-9431542 None:intergenic 60.0%
TCGTCGATGCATGGGGTCGT+CGG - chr2_4:9431526-9431545 Msa0313930:three_prime_UTR 60.0%
ATCAACGGAAGAGCCACCGG+CGG + chr2_4:9431843-9431862 None:intergenic 60.0%
TGCGGTACATTCGACCGCAG+TGG - chr2_4:9431911-9431930 Msa0313930:intron 60.0%
CTTCTGCGGTAACGCCACTG+CGG + chr2_4:9431928-9431947 None:intergenic 60.0%
CAGTGGCGTTACCGCAGAAG+AGG - chr2_4:9431928-9431947 Msa0313930:intron 60.0%
TTCTGCTGTGGCTGCGGCTA+CGG - chr2_4:9431956-9431975 Msa0313930:intron 60.0%
TGCGGCTACGGCTACGGTTA+TGG - chr2_4:9431968-9431987 Msa0313930:intron 60.0%
ATCAGCTTCCGCAGCAGCAG+CGG + chr2_4:9432036-9432055 None:intergenic 60.0%
TGCTGCTGCGGAAGCTGATG+AGG - chr2_4:9432037-9432056 Msa0313930:intron 60.0%
CCTTGAGACCCACTGTCCTC+AGG + chr2_4:9432539-9432558 Msa0313940:intron 60.0%
CCTGAGGACAGTGGGTCTCA+AGG - chr2_4:9432536-9432555 Msa0313930:intron 60.0%
! ACGGCTGGCTGGGTGGTAAT+TGG + chr2_4:9435084-9435103 None:intergenic 60.0%
CGATACCAGTTACGGCTGGC+TGG + chr2_4:9435095-9435114 None:intergenic 60.0%
GCCAGCCGTAACTGGTATCG+AGG - chr2_4:9435095-9435114 Msa0313930:intron 60.0%
CGCCGGTGTATTGGGGGAAC+TGG + chr2_4:9431300-9431319 None:intergenic 65.0%
CGGTACGGTCGCCGGTGTAT+TGG + chr2_4:9431309-9431328 None:intergenic 65.0%
TGTGGCTGCGGCTACGGCTA+CGG - chr2_4:9431962-9431981 Msa0313930:intron 65.0%
GGAAGGGAGGGGGAGTGAAG+TGG - chr2_4:9432121-9432140 Msa0313930:intron 65.0%
ACCACCCAGCCAGCCGTAAC+TGG - chr2_4:9435087-9435106 Msa0313930:intron 65.0%
! ACCAGTTACGGCTGGCTGGG+TGG + chr2_4:9435091-9435110 None:intergenic 65.0%
CGAACGGGGACGGTGCGTGA+CGG + chr2_4:9431471-9431490 None:intergenic 70.0%
AGCTGCAGCCGCTGCTGCTG+CGG - chr2_4:9432025-9432044 Msa0313930:intron 70.0%
ACGGGGACGGTGCGTGACGG+TGG + chr2_4:9431468-9431487 None:intergenic 75.0%
ACGCACCGTCCCCGTTCGCG+AGG - chr2_4:9431473-9431492 Msa0313930:three_prime_UTR 75.0%
!! GGCGACGGTGTCACCGCCAC+CGG + chr2_4:9431822-9431841 None:intergenic 75.0%
GGAAGAGCCACCGGCGGCGA+CGG + chr2_4:9431837-9431856 None:intergenic 75.0%
! GGCGGTGACACCGTCGCCGC+CGG - chr2_4:9431824-9431843 Msa0313930:intron 80.0%
! GGTGACACCGTCGCCGCCGG+TGG - chr2_4:9431827-9431846 Msa0313930:intron 80.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 9431290 9436580 9431290 ID=Msa0313930;Name=Msa0313930
chr2_4 mRNA 9431290 9436580 9431290 ID=Msa0313930-mRNA-1;Parent=Msa0313930;Name=Msa0313930-mRNA-1;_AED=0.03;_eAED=0.03;_QI=145|0|0.5|1|0|0.5|2|299|315
chr2_4 exon 9431290 9431588 9431290 ID=Msa0313930-mRNA-1:exon:3658;Parent=Msa0313930-mRNA-1
chr2_4 exon 9435488 9436580 9435488 ID=Msa0313930-mRNA-1:exon:3657;Parent=Msa0313930-mRNA-1
chr2_4 five_prime_UTR 9436436 9436580 9436436 ID=Msa0313930-mRNA-1:five_prime_utr;Parent=Msa0313930-mRNA-1
chr2_4 CDS 9435488 9436435 9435488 ID=Msa0313930-mRNA-1:cds;Parent=Msa0313930-mRNA-1
chr2_4 three_prime_UTR 9431290 9431588 9431290 ID=Msa0313930-mRNA-1:three_prime_utr;Parent=Msa0313930-mRNA-1
Gene Sequence

>Msa0313930

ATGCCGGATTTTCACCACGATTCTTTCACACCACCGTCACGCACCGTCCCCGTTCGCGAGGATTGTTGGTCAGAAGAAGCTTCTTCCACTCTCGTCGATGCATGGGGTCGTCGGTATCTTGAACTCAACCGTGGTAATCTTCGTCAGAAAGATTGGCAAGATGTTGCTGATGCTGTTAACGCTCTTCATGGTCATACCAAGAAAACTCATCGCACAGATGTTCAGTGTAAGAATCGAATCGATACGATTAAGAAAAAGTATAAGGTTGAAAAAGCTAGGGTTACGGAATCTAATGGTGTTTTGAATTCTAATTGGCCTTTTTTTGAACGGTTAGATGTTTTGATTGGACCTAATTTCAGTGCTAAGAAGTTATCAATTTCTTCACCGGTGGCGGTGACACCGTCGCCGCCGGTGGCTCTTCCGTTGATTCCTCATCGGAAATTTGCTAATTCTGGTGGTTATTCATCACCTGCAATTGCGGTACATTCGACCGCAGTGGCGTTACCGCAGAAGAGGAATTATTCTGCTGTGGCTGCGGCTACGGCTACGGTTATGGATGATGGGTATTTTAGGAGGAATTATTCTGCGGTAGCTGCAGCCGCTGCTGCTGCGGAAGCTGATGAGGATGATGATGAGGATGATGAGGTGGAGGAAGTTGAGGAGGAAGAGGTGGAAGTAGAGGAAGAGGAAGGGAGGGGGAGTGAAGTGGATGAAGGGGATAAAGGGAGAGAAGGGATGAAGAGGTTGGCGAAGGCGATAGAGAGTTTTGGTGAAATGTATGAGAGAGTGGAAGAACAGAAACTGAGGCAGATGGTGGATTTGGAGAAACAAAGGATGCAGTTTGCTAAAGATCTTGAAGTGCAGAGGATGCAGATGTTTATGGATACTCAAGTTCAGCTGGAGAGAATTAAGCGTGGAAAACCATCTGGGTCTAATGGTGAGATATAA

Protein sequence

>Msa0313930

MPDFHHDSFTPPSRTVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKVEKARVTESNGVLNSNWPFFERLDVLIGPNFSAKKLSISSPVAVTPSPPVALPLIPHRKFANSGGYSSPAIAVHSTAVALPQKRNYSAVAAATATVMDDGYFRRNYSAVAAAAAAAEADEDDDEDDEVEEVEEEEVEVEEEEGRGSEVDEGDKGREGMKRLAKAIESFGEMYERVEEQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKPSGSNGEI*