AlfalfaGEDB | Msa0313930

M. sativa cultivar zhongmu-4 / Msa0313930

KEGG: -
GO: -
PFAM: PF13837.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0313930	KEH36594.1	97.143	315	9	0	1	315	1	315	0.0	636

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0313930	sp\|Q9LJG8\|ASIL2_ARATH	33.333	345	157	10	19	305	80	409	3.26e-47	167

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0313930	TF	Trihelix

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003220	Msa0313930	0.801603	8.330223e-49	-8.615850e-47
Msa0004540	Msa0313930	0.801828	7.489882e-49	-8.615850e-47
Msa0007850	Msa0313930	0.815796	7.695520e-52	-8.615850e-47
Msa0008840	Msa0313930	0.804472	2.125112e-49	-8.615850e-47
Msa0010770	Msa0313930	0.843729	1.171341e-58	-8.615850e-47
Msa0014830	Msa0313930	0.827584	1.443113e-54	-8.615850e-47
Msa0017320	Msa0313930	0.829900	3.973906e-55	-8.615850e-47
Msa0020390	Msa0313930	0.810368	1.193324e-50	-8.615850e-47
Msa0029260	Msa0313930	0.827238	1.747224e-54	-8.615850e-47
Msa0029630	Msa0313930	0.802898	4.509855e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0313930	MtrunA17_Chr2g0283871	97.115	312	9	0	1	312	1	312	0.0	629
Msa0313930	MtrunA17_Chr4g0041151	50.000	318	106	7	11	311	19	300	2.21e-80	246
Msa0313930	MtrunA17_Chr8g0344681	40.728	302	142	10	19	309	64	339	5.66e-53	177
Msa0313930	MtrunA17_Chr2g0325841	32.075	371	162	9	11	299	34	396	1.19e-31	125
Msa0313930	MtrunA17_Chr1g0179531	37.624	101	57	3	23	122	133	228	8.26e-17	80.9
Msa0313930	MtrunA17_Chr6g0485241	36.170	94	55	2	23	115	130	219	2.48e-16	79.0
Msa0313930	MtrunA17_Chr1g0164461	36.735	98	55	2	18	115	33	123	3.25e-14	70.1
Msa0313930	MtrunA17_Chr3g0082261	37.755	98	54	2	18	115	33	123	7.18e-14	71.2
Msa0313930	MtrunA17_Chr2g0331931	36.752	117	67	3	14	128	263	374	1.70e-12	67.8
Msa0313930	MtrunA17_Chr4g0066271	31.915	94	62	2	22	114	116	208	3.43e-12	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0313930	AT3G58630.2	42.857	336	131	9	3	313	2	301	5.26e-67	212
Msa0313930	AT3G58630.1	42.857	336	131	9	3	313	2	301	9.62e-67	212
Msa0313930	AT3G14180.1	33.333	345	157	10	19	305	80	409	3.31e-48	167
Msa0313930	AT3G11100.1	37.500	296	119	7	19	314	18	247	2.56e-46	157
Msa0313930	AT5G05550.3	38.176	296	112	8	19	314	20	244	1.03e-45	155
Msa0313930	AT5G05550.1	38.176	296	112	8	19	314	20	244	1.44e-45	155
Msa0313930	AT5G05550.2	39.446	289	104	9	19	307	20	237	1.44e-44	152
Msa0313930	AT1G54060.1	51.020	98	44	2	19	116	90	183	1.99e-21	94.0
Msa0313930	AT3G54390.1	27.451	306	168	12	5	303	16	274	2.59e-20	89.7
Msa0313930	AT3G54390.2	27.451	306	168	12	5	303	32	290	3.94e-20	89.4

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Find 122 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATCGTGGTGAAAATC+CGG	0.442007	2_4:+9436410	None:intergenic
AACCCTAATTTCTCCGATGC+CGG	0.432438	2_4:-9436429	Msa0313930:exon
AACTGTACTTAAGCCTAATT+CGG	0.314549	2_4:-9431359	Msa0313930:three_prime_UTR
AACTTCTTAGCACTGAAATT+AGG	0.324747	2_4:+9436065	None:intergenic
AAGATATAGAAAAGGTTAAA+CGG	0.453825	2_4:+9436507	None:intergenic
AAGGGAGAGAAGGGATGAAG+AGG	0.497380	2_4:-9435692	Msa0313930:CDS
AAGGGGATAAAGGGAGAGAA+GGG	0.448917	2_4:-9435701	Msa0313930:CDS
AAGTAGAGGAAGAGGAAGGG+AGG	0.369131	2_4:-9435740	Msa0313930:CDS
AAGTGGATGAAGGGGATAAA+GGG	0.379670	2_4:-9435710	Msa0313930:CDS
AATCCGGCATCGGAGAAATT+AGG	0.223362	2_4:+9436426	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAGAATGAGAAGAAATT+GGG	+	chr2_4:9431386-9431405	None:intergenic	30.0%
AGTATAAGGTTGAAAAAGCT+AGG	-	chr2_4:9431691-9431710	Msa0313930:intron	30.0%
GTATAAGGTTGAAAAAGCTA+GGG	-	chr2_4:9431692-9431711	Msa0313930:intron	30.0%
ACATCTAACCGTTCAAAAAA+AGG	+	chr2_4:9431753-9431772	None:intergenic	30.0%
GAAGTTATCAATTTCTTCAC+CGG	-	chr2_4:9431800-9431819	Msa0313930:intron	30.0%
ATCAAATCACAAGCTAAAAG+GGG	+	chr2_4:9432423-9432442	Msa0313940:intron	30.0%
AAAACAAAAACTGAGCAATG+CGG	+	chr2_4:9432462-9432481	Msa0313940:intron	30.0%
GTTATACTGTTATGCATGAT+AGG	-	chr2_4:9432504-9432523	Msa0313930:intron	30.0%
AGAACTAAAGGTTGTTGTAT+TGG	+	chr2_4:9432876-9432895	Msa0313940:intron	30.0%
TTGTTCTTGATTGACATTGA+TGG	-	chr2_4:9432991-9433010	Msa0313930:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	9431290	9436580	9431290	ID=Msa0313930;Name=Msa0313930
chr2_4	mRNA	9431290	9436580	9431290	ID=Msa0313930-mRNA-1;Parent=Msa0313930;Name=Msa0313930-mRNA-1;_AED=0.03;_eAED=0.03;_QI=145\|0\|0.5\|1\|0\|0.5\|2\|299\|315
chr2_4	exon	9431290	9431588	9431290	ID=Msa0313930-mRNA-1:exon:3658;Parent=Msa0313930-mRNA-1
chr2_4	exon	9435488	9436580	9435488	ID=Msa0313930-mRNA-1:exon:3657;Parent=Msa0313930-mRNA-1
chr2_4	five_prime_UTR	9436436	9436580	9436436	ID=Msa0313930-mRNA-1:five_prime_utr;Parent=Msa0313930-mRNA-1
chr2_4	CDS	9435488	9436435	9435488	ID=Msa0313930-mRNA-1:cds;Parent=Msa0313930-mRNA-1
chr2_4	three_prime_UTR	9431290	9431588	9431290	ID=Msa0313930-mRNA-1:three_prime_utr;Parent=Msa0313930-mRNA-1

Gene Sequence

>Msa0313930

ATGCCGGATTTTCACCACGATTCTTTCACACCACCGTCACGCACCGTCCCCGTTCGCGAGGATTGTTGGTCAGAAGAAGCTTCTTCCACTCTCGTCGATGCATGGGGTCGTCGGTATCTTGAACTCAACCGTGGTAATCTTCGTCAGAAAGATTGGCAAGATGTTGCTGATGCTGTTAACGCTCTTCATGGTCATACCAAGAAAACTCATCGCACAGATGTTCAGTGTAAGAATCGAATCGATACGATTAAGAAAAAGTATAAGGTTGAAAAAGCTAGGGTTACGGAATCTAATGGTGTTTTGAATTCTAATTGGCCTTTTTTTGAACGGTTAGATGTTTTGATTGGACCTAATTTCAGTGCTAAGAAGTTATCAATTTCTTCACCGGTGGCGGTGACACCGTCGCCGCCGGTGGCTCTTCCGTTGATTCCTCATCGGAAATTTGCTAATTCTGGTGGTTATTCATCACCTGCAATTGCGGTACATTCGACCGCAGTGGCGTTACCGCAGAAGAGGAATTATTCTGCTGTGGCTGCGGCTACGGCTACGGTTATGGATGATGGGTATTTTAGGAGGAATTATTCTGCGGTAGCTGCAGCCGCTGCTGCTGCGGAAGCTGATGAGGATGATGATGAGGATGATGAGGTGGAGGAAGTTGAGGAGGAAGAGGTGGAAGTAGAGGAAGAGGAAGGGAGGGGGAGTGAAGTGGATGAAGGGGATAAAGGGAGAGAAGGGATGAAGAGGTTGGCGAAGGCGATAGAGAGTTTTGGTGAAATGTATGAGAGAGTGGAAGAACAGAAACTGAGGCAGATGGTGGATTTGGAGAAACAAAGGATGCAGTTTGCTAAAGATCTTGAAGTGCAGAGGATGCAGATGTTTATGGATACTCAAGTTCAGCTGGAGAGAATTAAGCGTGGAAAACCATCTGGGTCTAATGGTGAGATATAA

Protein sequence

>Msa0313930

MPDFHHDSFTPPSRTVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKVEKARVTESNGVLNSNWPFFERLDVLIGPNFSAKKLSISSPVAVTPSPPVALPLIPHRKFANSGGYSSPAIAVHSTAVALPQKRNYSAVAAATATVMDDGYFRRNYSAVAAAAAAAEADEDDDEDDEVEEVEEEEVEVEEEEGRGSEVDEGDKGREGMKRLAKAIESFGEMYERVEEQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKPSGSNGEI*