AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1214480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 75 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGGGTGGTGCAAGGATTT+TGG 0.141220 8_1:-75102147 Msa1214480:CDS
TGGTGTCTTTCATGGTGTTT+TGG 0.222197 8_1:-75101542 Msa1214480:CDS
CTCACTTCTTGTTACTTATA+TGG 0.223408 8_1:-75101782 Msa1214480:CDS
TCAGCTGGTCACTAATTATA+AGG 0.227109 8_1:-75101704 Msa1214480:CDS
GACGATTTGAACTTCAAATA+AGG 0.256081 8_1:+75105353 None:intergenic
GGTTATTATGGTGTCTTTCA+TGG 0.282164 8_1:-75101550 Msa1214480:CDS
GTGGCCGCCTTTCTTCGATC+TGG 0.291921 8_1:-75101399 Msa1214480:CDS
CAATAAAAGTGAAGTTTCTA+AGG 0.344824 8_1:-75103590 Msa1214480:CDS
TTCAAATTTCGATCCGAATC+CGG 0.345851 8_1:-75101947 Msa1214480:CDS
CTCATTGTAAATGCGGATGC+TGG 0.362203 8_1:-75102165 Msa1214480:CDS
AGGCGGAGGTAGGTTGGATT+AGG 0.377460 8_1:+75102186 None:intergenic
TGGAAATAAGTATTGGAGTT+GGG 0.380170 8_1:-75101657 Msa1214480:CDS
TTTCGATCCGAATCCGGATC+TGG 0.382814 8_1:-75101941 Msa1214480:CDS
CGGAGGTAGGTTGGATTAGG+AGG 0.390553 8_1:+75102189 None:intergenic
TTGATCAAATAAGAAACATA+AGG 0.399647 8_1:+75106602 None:intergenic
GGTGTTGCGTTGGGTTATTA+TGG 0.401377 8_1:-75101562 Msa1214480:CDS
GTGGATGTGCGGTGTGGTGG+TGG 0.406014 8_1:-75101183 Msa1214480:CDS
CAGCTGGTCACTAATTATAA+GGG 0.407857 8_1:-75101703 Msa1214480:CDS
TGGCCGCCTTTCTTCGATCT+GGG 0.413779 8_1:-75101398 Msa1214480:CDS
GATGTGCGGTGTGGTGGTGG+TGG 0.427248 8_1:-75101180 Msa1214480:CDS
TCTGAATCCAGATCCGGATT+CGG 0.441037 8_1:+75101934 None:intergenic
TAGCGTCAAATGACGCTCCT+TGG 0.456268 8_1:+75106522 None:intergenic
TTGGAAATAAGTATTGGAGT+TGG 0.458846 8_1:-75101658 Msa1214480:CDS
ATAGATTGTGGAGGTAGATC+TGG 0.460266 8_1:-75101971 Msa1214480:CDS
GAACCAGCCAACCATTGAAA+AGG 0.462038 8_1:+75102099 None:intergenic
GCAGCGACGCCGGTCTAAAG+TGG 0.466556 8_1:+75101367 None:intergenic
TAGGTTGGATTAGGAGGGAG+AGG 0.473391 8_1:+75102195 None:intergenic
CAAAACACGGGCAGCGACGC+CGG 0.480452 8_1:+75101357 None:intergenic
GTAGTGGTGGGGCATAGTGG+TGG 0.485084 8_1:-75101202 Msa1214480:CDS
TGATGATTCAGTTGTGGTAG+TGG 0.494594 8_1:-75101218 Msa1214480:CDS
GTGGTAGTGGTGGGGCATAG+TGG 0.504265 8_1:-75101205 Msa1214480:CDS
GCCAACCATTGAAAAGGGTC+GGG 0.511784 8_1:+75102105 None:intergenic
TGATCAAATAAGAAACATAA+GGG 0.515515 8_1:+75106603 None:intergenic
CGGTGATCTCAAAGGAAACT+CGG 0.527356 8_1:+75101620 None:intergenic
ACAATGAGGCGGAGGTAGGT+TGG 0.527406 8_1:+75102180 None:intergenic
GTTGTCTTCCCACTTTAGAC+CGG 0.530258 8_1:-75101376 Msa1214480:CDS
AGCCAACCATTGAAAAGGGT+CGG 0.532249 8_1:+75102104 None:intergenic
AACCAGCCAACCATTGAAAA+GGG 0.535637 8_1:+75102100 None:intergenic
GTGGCTCGAAAGAGCGGTGG+TGG 0.542825 8_1:-75101509 Msa1214480:intron
GGAGGTAGGTTGGATTAGGA+GGG 0.544174 8_1:+75102190 None:intergenic
GACGGATCTGAATCCAGATC+CGG 0.544640 8_1:+75101928 None:intergenic
GATTCAGTTGTGGTAGTGGT+GGG 0.546216 8_1:-75101214 Msa1214480:CDS
TGATTCAGTTGTGGTAGTGG+TGG 0.564329 8_1:-75101215 Msa1214480:CDS
GTGGTGGATGTGCGGTGTGG+TGG 0.569794 8_1:-75101186 Msa1214480:CDS
GGGGCATAGTGGTGGATGTG+CGG 0.573188 8_1:-75101194 Msa1214480:CDS
AGACAACCCAGATCGAAGAA+AGG 0.577538 8_1:+75101392 None:intergenic
ATTTACAATGAGGCGGAGGT+AGG 0.581922 8_1:+75102176 None:intergenic
CAACAAACGTGAAGTTTCCA+AGG 0.586927 8_1:-75106539 Msa1214480:CDS
TCATTGTAAATGCGGATGCT+GGG 0.587128 8_1:-75102164 Msa1214480:CDS
AGGTTGGATTAGGAGGGAGA+GGG 0.592772 8_1:+75102196 None:intergenic
AGATCACCGAAGTGACTATG+AGG 0.594467 8_1:-75101606 Msa1214480:CDS
CCTCCGCCTCATTGTAAATG+CGG 0.599842 8_1:-75102172 Msa1214480:CDS
ATAATTAGTGACCAGCTGAA+AGG 0.606048 8_1:+75101708 None:intergenic
TGAGTGGTGGCTCGAAAGAG+CGG 0.606187 8_1:-75101515 Msa1214480:CDS
AGTCACTTCGGTGATCTCAA+AGG 0.608362 8_1:+75101612 None:intergenic
ACGAACCCGACAACAAAACA+CGG 0.610903 8_1:+75101344 None:intergenic
GGTGCTGGGCGGATAGATTG+TGG 0.611500 8_1:-75101983 Msa1214480:CDS
TGCGGATGCTGGGTGGTGCA+AGG 0.612891 8_1:-75102154 Msa1214480:CDS
GGAAGTCCTCATAGTCACTT+CGG 0.614884 8_1:+75101600 None:intergenic
ATTCAGTTGTGGTAGTGGTG+GGG 0.619411 8_1:-75101213 Msa1214480:CDS
TGATGGTGATGATTCAGTTG+TGG 0.621445 8_1:-75101224 Msa1214480:CDS
ATAGTGGTGGATGTGCGGTG+TGG 0.639877 8_1:-75101189 Msa1214480:CDS
GGATCTGGATTCAGATCCGT+CGG 0.641720 8_1:-75101926 Msa1214480:intron
CAACCCAGATCGAAGAAAGG+CGG 0.644689 8_1:+75101395 None:intergenic
CGAACCCGACAACAAAACAC+GGG 0.648484 8_1:+75101345 None:intergenic
CAGCATCCGCATTTACAATG+AGG 0.648613 8_1:+75102166 None:intergenic
GAGGGCAACGTGTATACCGA+GGG 0.660336 8_1:+75102214 None:intergenic
GAAAAGGGTCGGGAGTGATG+CGG 0.661354 8_1:+75102115 None:intergenic
CATCCGCATTTACAATGAGG+CGG 0.668471 8_1:+75102169 None:intergenic
TTGTAAATGCGGATGCTGGG+TGG 0.682758 8_1:-75102161 Msa1214480:CDS
GGCAACGTGTATACCGAGGG+AGG 0.700332 8_1:+75102217 None:intergenic
ATAAGGGTGATTACCACACA+CGG 0.704662 8_1:-75101687 Msa1214480:CDS
GCTGGGCGGATAGATTGTGG+AGG 0.705930 8_1:-75101980 Msa1214480:CDS
GTGGTGGCTCGAAAGAGCGG+TGG 0.716537 8_1:-75101512 Msa1214480:CDS
AGGGTCGGGAGTGATGCGGA+CGG 0.716998 8_1:+75102119 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGGAAAAAAAAAATTATAT+TGG + chr8_1:75101465-75101484 None:intergenic 10.0%
!!! AGATTTTGATGAATAATTAT+TGG - chr8_1:75101864-75101883 Msa1214480:intron 15.0%
!! ATTTAACTACAAAAATCTAA+AGG + chr8_1:75101960-75101979 None:intergenic 15.0%
!! CTATCAACTATTATTAAAAA+AGG + chr8_1:75103015-75103034 None:intergenic 15.0%
!! TGATTAAGATTTAAATCATT+GGG - chr8_1:75103217-75103236 Msa1214480:intron 15.0%
!!! TATTTATATTTTTGCAACTT+AGG + chr8_1:75103669-75103688 None:intergenic 15.0%
!! GCAAAAATATAAATAAATTG+TGG - chr8_1:75103674-75103693 Msa1214480:intron 15.0%
!!! TACACATACTTTTTTTTTTT+CGG + chr8_1:75103758-75103777 None:intergenic 15.0%
!! AAAATAATAGAGAATGAAAT+GGG + chr8_1:75104055-75104074 None:intergenic 15.0%
!! TGTAGGAAAAAAAATTATAT+TGG + chr8_1:75104412-75104431 None:intergenic 15.0%
!! AAAATACCATTAAAATAGAT+AGG + chr8_1:75105042-75105061 None:intergenic 15.0%
!!! AGATTTTGATGAATAATTAT+TGG - chr8_1:75101864-75101883 Msa1214480:intron 15.0%
!! TGATCAAATAAGAAACATAA+GGG + chr8_1:75101205-75101224 None:intergenic 20.0%
!! TTGATCAAATAAGAAACATA+AGG + chr8_1:75101206-75101225 None:intergenic 20.0%
!! AACGTATTATTACAACATTA+TGG + chr8_1:75101360-75101379 None:intergenic 20.0%
!! ATTCATCAAAATCTTAATGT+GGG + chr8_1:75101858-75101877 None:intergenic 20.0%
!! TATTCATCAAAATCTTAATG+TGG + chr8_1:75101859-75101878 None:intergenic 20.0%
!! AATAAACATAACCCATATAT+GGG + chr8_1:75102228-75102247 None:intergenic 20.0%
!! AAATAAACATAACCCATATA+TGG + chr8_1:75102229-75102248 None:intergenic 20.0%
!! ATGGTGAGATAATATTAATA+CGG + chr8_1:75102350-75102369 None:intergenic 20.0%
!! TGATCAAATAAGAAACAAAA+TGG + chr8_1:75102369-75102388 None:intergenic 20.0%
!! ATCAAAACATTAAACAGAAT+TGG - chr8_1:75102385-75102404 Msa1214480:intron 20.0%
!!! TCAATTTGTTCTTAGATTTT+TGG - chr8_1:75102893-75102912 Msa1214480:intron 20.0%
!!! CAATTTGTTCTTAGATTTTT+GGG - chr8_1:75102894-75102913 Msa1214480:intron 20.0%
!!! AATTTGTTCTTAGATTTTTG+GGG - chr8_1:75102895-75102914 Msa1214480:intron 20.0%
!! GTGATTAAGATTTAAATCAT+TGG - chr8_1:75103216-75103235 Msa1214480:intron 20.0%
!! GATTAAGATTTAAATCATTG+GGG - chr8_1:75103218-75103237 Msa1214480:intron 20.0%
!!! TTGTGGTATTTAAAATTTGA+AGG - chr8_1:75103691-75103710 Msa1214480:intron 20.0%
!! GAAAATAATAGAGAATGAAA+TGG + chr8_1:75104056-75104075 None:intergenic 20.0%
!! AGATTTGGATGAATAATTAT+TGG + chr8_1:75104772-75104791 None:intergenic 20.0%
!!! TTAGGAAACAAGAAAATTTT+AGG + chr8_1:75104829-75104848 None:intergenic 20.0%
!!! TAACAACCTATCTATTTTAA+TGG - chr8_1:75105033-75105052 Msa1214480:intron 20.0%
!! TATTCATCAAAATCTTAATG+CGG + chr8_1:75101859-75101878 None:intergenic 20.0%
!! TTAAAATAAAGCCTTTCAAA+AGG + chr8_1:75105955-75105974 None:intergenic 20.0%
!!! TTTTAACTTTTCAGTACAGT+AGG - chr8_1:75101575-75101594 Msa1214480:CDS 25.0%
! TCTTTGCACTGAAATTAATT+TGG - chr8_1:75102086-75102105 Msa1214480:intron 25.0%
! CTTTGCACTGAAATTAATTT+GGG - chr8_1:75102087-75102106 Msa1214480:intron 25.0%
!! AGGTTGCATTTTCATAAAAT+AGG + chr8_1:75102185-75102204 None:intergenic 25.0%
! TACAAACACAGAGAATAAAA+TGG + chr8_1:75102699-75102718 None:intergenic 25.0%
! GAAGGAAAATATCTTAAACA+AGG + chr8_1:75102771-75102790 None:intergenic 25.0%
! ATCACAAATAGAATTGAGAA+AGG + chr8_1:75102870-75102889 None:intergenic 25.0%
!! GGTTTAAAATCTTTGAATTG+TGG - chr8_1:75102923-75102942 Msa1214480:intron 25.0%
! TATTAAAAAAGGCAGTATCA+TGG + chr8_1:75103004-75103023 None:intergenic 25.0%
!!! TTCAATCTGTTCTGAAATTT+TGG - chr8_1:75103035-75103054 Msa1214480:intron 25.0%
!!! TTTTGTTGCTTTTTCAACTA+TGG - chr8_1:75103164-75103183 Msa1214480:intron 25.0%
!!! TTTGTTGCTTTTTCAACTAT+GGG - chr8_1:75103165-75103184 Msa1214480:intron 25.0%
!! TACTTATTAGGCTTTTAAAC+AGG + chr8_1:75103590-75103609 None:intergenic 25.0%
! AACGAATACACATACTTATT+AGG + chr8_1:75103602-75103621 None:intergenic 25.0%
! AGCTAGCAATTTCATAAAAT+AGG + chr8_1:75103958-75103977 None:intergenic 25.0%
! TAATACAGCTGAAACTTAAA+AGG + chr8_1:75104120-75104139 None:intergenic 25.0%
! TGATCAAATAAGAAACGTAA+GGG + chr8_1:75104154-75104173 None:intergenic 25.0%
! TTGATCAAATAAGAAACGTA+AGG + chr8_1:75104155-75104174 None:intergenic 25.0%
! CAATAAAAGTGAAGTTTCTA+AGG - chr8_1:75104215-75104234 Msa1214480:intron 25.0%
!!! AGCGTTTTATTACAACATTA+TGG + chr8_1:75104309-75104328 None:intergenic 25.0%
! AAGATCTAAATTGAGCAATT+GGG + chr8_1:75104602-75104621 None:intergenic 25.0%
! AAAGATCTAAATTGAGCAAT+TGG + chr8_1:75104603-75104622 None:intergenic 25.0%
!! GTTCATTTTCTTTAAACCAA+AGG - chr8_1:75104746-75104765 Msa1214480:intron 25.0%
! TATTCATCCAAATCTTAATG+TGG - chr8_1:75104777-75104796 Msa1214480:intron 25.0%
! ATTCATCCAAATCTTAATGT+GGG - chr8_1:75104778-75104797 Msa1214480:intron 25.0%
!!! AAACAAGAAAATTTTAGGAC+AGG + chr8_1:75104824-75104843 None:intergenic 25.0%
! ATAGATAGGTTGTTAAATTG+TGG + chr8_1:75105028-75105047 None:intergenic 25.0%
!!! CTATCATTTTCCATTTTTAG+CGG + chr8_1:75105105-75105124 None:intergenic 25.0%
! GAAAATGATAGAAACAAACA+TGG - chr8_1:75105114-75105133 Msa1214480:intron 25.0%
! ATTCATCAAAATCTTAATGC+GGG + chr8_1:75105263-75105282 None:intergenic 25.0%
!! CGTTCTTTTCTTTAATCTAA+AGG + chr8_1:75105295-75105314 None:intergenic 25.0%
!!! CTTACGGTTTTATGATTTTA+AGG + chr8_1:75105420-75105439 None:intergenic 25.0%
!!! AGCTTTTTGGAAATAAGTAT+TGG - chr8_1:75106141-75106160 Msa1214480:intron 25.0%
! TCACTTGCTAAGATGAAAAA+AGG - chr8_1:75101312-75101331 Msa1214480:intron 30.0%
! ATAGAAGTGTAAAAGTGTGT+AGG + chr8_1:75101484-75101503 None:intergenic 30.0%
! ACACACTTTTACACTTCTAT+TGG - chr8_1:75101484-75101503 Msa1214480:intron 30.0%
! CACACTTTTACACTTCTATT+GGG - chr8_1:75101485-75101504 Msa1214480:intron 30.0%
GAAGTAGTGATGTTTAATGA+AGG - chr8_1:75101522-75101541 Msa1214480:CDS 30.0%
GTACATCTGAATTGACAATT+GGG + chr8_1:75101657-75101676 None:intergenic 30.0%
TGTACATCTGAATTGACAAT+TGG + chr8_1:75101658-75101677 None:intergenic 30.0%
!!! GTATTTTAGTGTTCAAGCAT+TGG - chr8_1:75101724-75101743 Msa1214480:CDS 30.0%
AACATCAACCTTTGAATCTA+AGG - chr8_1:75101767-75101786 Msa1214480:CDS 30.0%
CAATTCTTCCTTAGATTCAA+AGG + chr8_1:75101778-75101797 None:intergenic 30.0%
!! GATGAATAATTATTGGCCTT+TGG - chr8_1:75101871-75101890 Msa1214480:intron 30.0%
! CGTTCTTTTCTTTAATCCAA+AGG + chr8_1:75101890-75101909 None:intergenic 30.0%
AGAAAAGAACGCTTAAGATT+TGG - chr8_1:75101899-75101918 Msa1214480:intron 30.0%
CATATTAACACTCAATCAAG+AGG + chr8_1:75102205-75102224 None:intergenic 30.0%
AGTGTTAATATGCCCATATA+TGG - chr8_1:75102213-75102232 Msa1214480:CDS 30.0%
GTGTTAATATGCCCATATAT+GGG - chr8_1:75102214-75102233 Msa1214480:CDS 30.0%
!!! GGGTTATGTTTATTTTGCTA+TGG - chr8_1:75102234-75102253 Msa1214480:CDS 30.0%
GACAGCATAGAAAAAAATAG+AGG + chr8_1:75102284-75102303 None:intergenic 30.0%
GACGATTTGAACTTCAAATA+AGG + chr8_1:75102455-75102474 None:intergenic 30.0%
GTGTTAATATGCACAAAAGT+TGG - chr8_1:75102630-75102649 Msa1214480:intron 30.0%
TGGTCTATATTTCACAAGTA+AGG + chr8_1:75102679-75102698 None:intergenic 30.0%
!! TTCTTAGATTTTTGGGGATT+AGG - chr8_1:75102901-75102920 Msa1214480:intron 30.0%
!! TCTTAGATTTTTGGGGATTA+GGG - chr8_1:75102902-75102921 Msa1214480:intron 30.0%
!!! TTCTGAAATTTTGGAGTATC+AGG - chr8_1:75103044-75103063 Msa1214480:intron 30.0%
!!! TCTGAAATTTTGGAGTATCA+GGG - chr8_1:75103045-75103064 Msa1214480:intron 30.0%
AACCTTTGAATTGGTGAAAT+TGG - chr8_1:75103073-75103092 Msa1214480:intron 30.0%
AACCAATTTCACCAATTCAA+AGG + chr8_1:75103078-75103097 None:intergenic 30.0%
!!! AGGCTTTAGTTTTTTCAACT+AGG + chr8_1:75103481-75103500 None:intergenic 30.0%
! CTAAGAGCTTTGTAACAATT+TGG - chr8_1:75103639-75103658 Msa1214480:intron 30.0%
AGTATGTGTAGTTACACATA+TGG - chr8_1:75103768-75103787 Msa1214480:intron 30.0%
GTATGTGTAGTTACACATAT+GGG - chr8_1:75103769-75103788 Msa1214480:intron 30.0%
CTCGTTTATTAAATAGACGA+GGG + chr8_1:75103835-75103854 None:intergenic 30.0%
GTCTATTTAATAAACGAGCT+AGG - chr8_1:75103837-75103856 Msa1214480:intron 30.0%
TAATGTGTCTATCACATGTA+GGG + chr8_1:75103925-75103944 None:intergenic 30.0%
ATAATGTGTCTATCACATGT+AGG + chr8_1:75103926-75103945 None:intergenic 30.0%
! ATTTTCTTTGCTTTCGTTTG+TGG - chr8_1:75104070-75104089 Msa1214480:intron 30.0%
! TCACTTGCTAAGATGAAAAA+AGG - chr8_1:75101312-75101331 Msa1214480:intron 30.0%
! ATAGAAGTGTAAAAGTGTGT+AGG + chr8_1:75101484-75101503 None:intergenic 30.0%
! ACACACTTTTACACTTCTAT+TGG - chr8_1:75101484-75101503 Msa1214480:intron 30.0%
! CACACTTTTACACTTCTATT+GGG - chr8_1:75101485-75101504 Msa1214480:intron 30.0%
CTATAGTAGTTGTATGAATG+AGG - chr8_1:75104533-75104552 Msa1214480:intron 30.0%
GAAAATGAACGCTTAAGATT+TGG + chr8_1:75104736-75104755 None:intergenic 30.0%
!! GATGAATAATTATTGGCCTT+TGG + chr8_1:75101871-75101890 None:intergenic 30.0%
CTTACAAAAGGATAGTTTCA+TGG - chr8_1:75104893-75104912 Msa1214480:intron 30.0%
TGTGTGAAACTTTGATTCAA+AGG + chr8_1:75104998-75105017 None:intergenic 30.0%
! AGAAACAAACATGGTGTTAA+AGG - chr8_1:75105123-75105142 Msa1214480:intron 30.0%
! GAAACAAACATGGTGTTAAA+GGG - chr8_1:75105124-75105143 Msa1214480:intron 30.0%
AGAAAAGAACGCTTAAGATT+TGG - chr8_1:75101899-75101918 Msa1214480:intron 30.0%
!!! CGGTTTTATGATTTTAAGGT+CGG + chr8_1:75105416-75105435 None:intergenic 30.0%
TTGGATGAATGTAGATCTTA+CGG + chr8_1:75105436-75105455 None:intergenic 30.0%
TTATACTGTTATGTTACGAC+TGG + chr8_1:75105476-75105495 None:intergenic 30.0%
!!! GGCTTTATTTTAATGTGTTG+TGG - chr8_1:75105962-75105981 Msa1214480:intron 30.0%
! CTCACTTCTTGTTACTTATA+TGG - chr8_1:75106023-75106042 Msa1214480:intron 30.0%
!! TTGGAAATAAGTATTGGAGT+TGG - chr8_1:75106147-75106166 Msa1214480:intron 30.0%
!! TGGAAATAAGTATTGGAGTT+GGG - chr8_1:75106148-75106167 Msa1214480:intron 30.0%
! TAACTTTTCAGTACAGTAGG+TGG - chr8_1:75101578-75101597 Msa1214480:CDS 35.0%
GAGTTTCATTGTTCTTTGCA+CGG - chr8_1:75101986-75102005 Msa1214480:CDS 35.0%
! GGTTGCATTTTCACAAGTAT+GGG + chr8_1:75102263-75102282 None:intergenic 35.0%
! AGGTTGCATTTTCACAAGTA+TGG + chr8_1:75102264-75102283 None:intergenic 35.0%
!!! GCTGTCTTCTATGTTGTTTT+TGG - chr8_1:75102298-75102317 Msa1214480:intron 35.0%
TCTCTTGCTAAGCAGAAAAA+AGG - chr8_1:75102473-75102492 Msa1214480:intron 35.0%
CCTTCTTATTCGAATCTTCT+CGG - chr8_1:75102786-75102805 Msa1214480:intron 35.0%
AGGGTTTCAAACCTTTGAAT+TGG - chr8_1:75103064-75103083 Msa1214480:intron 35.0%
CTTCACACATGCTCATAATT+TGG - chr8_1:75103336-75103355 Msa1214480:intron 35.0%
!! TTGCCTATGTTGCCTTATTT+GGG - chr8_1:75103378-75103397 Msa1214480:intron 35.0%
TTTCCCAAATAAGGCAACAT+AGG + chr8_1:75103384-75103403 None:intergenic 35.0%
TGGGATGAATTTCCCAAATA+AGG + chr8_1:75103393-75103412 None:intergenic 35.0%
GCTTAAAAAAAGCCTTTGAC+AGG + chr8_1:75103520-75103539 None:intergenic 35.0%
!! CTGACTTTTAAAAAGCTAGG+CGG + chr8_1:75103553-75103572 None:intergenic 35.0%
TTTAAACAGGCTAATAGACC+AGG + chr8_1:75103577-75103596 None:intergenic 35.0%
TATTAAATAGACGAGGGCTA+AGG + chr8_1:75103829-75103848 None:intergenic 35.0%
GCTCGTTTATTAAATAGACG+AGG + chr8_1:75103836-75103855 None:intergenic 35.0%
! AAATTGCTAGCTCTTGATTG+AGG - chr8_1:75103966-75103985 Msa1214480:intron 35.0%
! AATTGCTAGCTCTTGATTGA+GGG - chr8_1:75103967-75103986 Msa1214480:intron 35.0%
GGGTTAATATGCACATAAGT+TGG - chr8_1:75103987-75104006 Msa1214480:intron 35.0%
!! GATGATTTTAGCGTCAAATG+AGG + chr8_1:75101294-75101313 None:intergenic 35.0%
GAGGTAGTGATGTTTAATGA+AGG - chr8_1:75104467-75104486 Msa1214480:intron 35.0%
GAAGAAGATGGATCTCTATT+AGG + chr8_1:75104847-75104866 None:intergenic 35.0%
! CTTTTGTAAGATAATAGCGC+AGG + chr8_1:75104883-75104902 None:intergenic 35.0%
CTGCGCTATTATCTTACAAA+AGG - chr8_1:75104881-75104900 Msa1214480:intron 35.0%
CCAATGCTTAATTCAAGTGA+AGG + chr8_1:75104942-75104961 None:intergenic 35.0%
CCTTCACTTGAATTAAGCAT+TGG - chr8_1:75104939-75104958 Msa1214480:intron 35.0%
GAAATCTCTACCGCTAAAAA+TGG - chr8_1:75105092-75105111 Msa1214480:intron 35.0%
! ATGGTGTTAAAGGGAAGAAA+CGG - chr8_1:75105133-75105152 Msa1214480:intron 35.0%
AGAAACGGAAGAAAAACAAG+TGG - chr8_1:75105148-75105167 Msa1214480:intron 35.0%
!!! GTTGATTTTTAGCACTTTCG+TGG - chr8_1:75105734-75105753 Msa1214480:intron 35.0%
!!! TGGTTTCGTAGTGGTTTTAA+TGG - chr8_1:75105801-75105820 Msa1214480:intron 35.0%
TTCAAATTTCGATCCGAATC+CGG - chr8_1:75105858-75105877 Msa1214480:intron 35.0%
!!! TGTTGCTCTTCTTTTGAGTT+CGG - chr8_1:75106000-75106019 Msa1214480:intron 35.0%
ATAATTAGTGACCAGCTGAA+AGG + chr8_1:75106100-75106119 None:intergenic 35.0%
TCAGCTGGTCACTAATTATA+AGG - chr8_1:75106101-75106120 Msa1214480:intron 35.0%
CAGCTGGTCACTAATTATAA+GGG - chr8_1:75106102-75106121 Msa1214480:intron 35.0%
! ACTTCCAAACGAGACATTTT+TGG - chr8_1:75106222-75106241 Msa1214480:intron 35.0%
AACACCAAAAATGTCTCGTT+TGG + chr8_1:75106229-75106248 None:intergenic 35.0%
GGTTATTATGGTGTCTTTCA+TGG - chr8_1:75106255-75106274 Msa1214480:intron 35.0%
!! GGTGATTTTAGGTGTTCATT+TGG - chr8_1:75106317-75106336 Msa1214480:intron 35.0%
CAACACAAACAAAGATCTAG+AGG + chr8_1:75106490-75106509 None:intergenic 35.0%
CAACAAACGTGAAGTTTCCA+AGG - chr8_1:75101266-75101285 Msa1214480:intron 40.0%
AATACGTTCTTTGCCTACGA+AGG - chr8_1:75101372-75101391 Msa1214480:CDS 40.0%
AGTACAGTAGGTGGATGAAT+GGG - chr8_1:75101587-75101606 Msa1214480:CDS 40.0%
CCGAGAAGATTCGAATAAGA+AGG + chr8_1:75102789-75102808 None:intergenic 40.0%
! CTTGCCTATGTTGCCTTATT+TGG - chr8_1:75103377-75103396 Msa1214480:intron 40.0%
TCCCATTTCATAAGACCATG+TGG - chr8_1:75103408-75103427 Msa1214480:intron 40.0%
!! CCCACATGGTCTTATGAAAT+GGG + chr8_1:75103412-75103431 None:intergenic 40.0%
CCCATTTCATAAGACCATGT+GGG - chr8_1:75103409-75103428 Msa1214480:intron 40.0%
CCATTTCATAAGACCATGTG+GGG - chr8_1:75103410-75103429 Msa1214480:intron 40.0%
TTGCCTATTTAAGCAAAGCC+CGG + chr8_1:75103456-75103475 None:intergenic 40.0%
!! CGCCTAGCTTTTTAAAAGTC+AGG - chr8_1:75103551-75103570 Msa1214480:CDS 40.0%
!! GGCCTGACTTTTAAAAAGCT+AGG + chr8_1:75103556-75103575 None:intergenic 40.0%
!! AGCTTTTTAAAAGTCAGGCC+TGG - chr8_1:75103556-75103575 Msa1214480:CDS 40.0%
TTGGGCTTAAAAATGTGTCG+AGG - chr8_1:75101503-75101522 Msa1214480:intron 40.0%
CGAATGCCCACATTAAGATT+TGG + chr8_1:75104787-75104806 None:intergenic 40.0%
CGTCTCATTTGAGAAGAAGA+TGG + chr8_1:75104859-75104878 None:intergenic 40.0%
ACGGAAGAAAAACAAGTGGT+TGG - chr8_1:75105152-75105171 Msa1214480:intron 40.0%
TCAACGAATCTGTTGACACA+TGG - chr8_1:75105329-75105348 Msa1214480:CDS 40.0%
AACTCATCTCCAACCATAGA+GGG + chr8_1:75105511-75105530 None:intergenic 40.0%
TAACTCATCTCCAACCATAG+AGG + chr8_1:75105512-75105531 None:intergenic 40.0%
TCATTGTAAATGCGGATGCT+GGG - chr8_1:75105641-75105660 Msa1214480:intron 40.0%
AACCAGCCAACCATTGAAAA+GGG + chr8_1:75105708-75105727 None:intergenic 40.0%
!!! GATTTTTAGCACTTTCGTGG+TGG - chr8_1:75105737-75105756 Msa1214480:intron 40.0%
!!! GTAGTGGTTTTAATGGTGCT+GGG - chr8_1:75105808-75105827 Msa1214480:intron 40.0%
ATAGATTGTGGAGGTAGATC+TGG - chr8_1:75105834-75105853 Msa1214480:intron 40.0%
! TTTGCAGTGGTCCTTTTGAA+AGG - chr8_1:75105941-75105960 Msa1214480:intron 40.0%
ATGTGTTGTGGTGTTTAGTG+TGG - chr8_1:75105974-75105993 Msa1214480:intron 40.0%
! GTTTTGTATAGCCTTTCAGC+TGG - chr8_1:75106086-75106105 Msa1214480:intron 40.0%
ATAAGGGTGATTACCACACA+CGG - chr8_1:75106118-75106137 Msa1214480:intron 40.0%
!!! AGACATTTTTGGTGTTGCGT+TGG - chr8_1:75106233-75106252 Msa1214480:intron 40.0%
!!! GACATTTTTGGTGTTGCGTT+GGG - chr8_1:75106234-75106253 Msa1214480:intron 40.0%
! TGGTGTCTTTCATGGTGTTT+TGG - chr8_1:75106263-75106282 Msa1214480:intron 40.0%
! GGTGTCTTTCATGGTGTTTT+GGG - chr8_1:75106264-75106283 Msa1214480:intron 40.0%
! GTGTCTTTCATGGTGTTTTG+GGG - chr8_1:75106265-75106284 Msa1214480:intron 40.0%
!! TGTCTTTCATGGTGTTTTGG+GGG - chr8_1:75106266-75106285 Msa1214480:intron 40.0%
TGGATAGTCTCAGATCTCAA+TGG - chr8_1:75106337-75106356 Msa1214480:intron 40.0%
GGATAGTCTCAGATCTCAAT+GGG - chr8_1:75106338-75106357 Msa1214480:intron 40.0%
!!! CGTAGTTTTGTCTCTATCGT+TGG - chr8_1:75106541-75106560 Msa1214480:CDS 40.0%
! TGATGGTGATGATTCAGTTG+TGG - chr8_1:75106581-75106600 Msa1214480:exon 40.0%
TGATGATTCAGTTGTGGTAG+TGG - chr8_1:75106587-75106606 Msa1214480:five_prime_UTR 40.0%
CAGTACAGTAGGTGGATGAA+TGG - chr8_1:75101586-75101605 Msa1214480:CDS 45.0%
GTACAGTAGGTGGATGAATG+GGG - chr8_1:75101588-75101607 Msa1214480:CDS 45.0%
CATTGTTCTTTGCACGGTGT+CGG - chr8_1:75101992-75102011 Msa1214480:CDS 45.0%
ATCCGACACGTTAGTCGATA+CGG + chr8_1:75102021-75102040 None:intergenic 45.0%
!! CCCCACATGGTCTTATGAAA+TGG + chr8_1:75103413-75103432 None:intergenic 45.0%
TTTCATAAGACCATGTGGGG+TGG - chr8_1:75103413-75103432 Msa1214480:intron 45.0%
TTCATAAGACCATGTGGGGT+GGG - chr8_1:75103414-75103433 Msa1214480:intron 45.0%
TATTTAAGCAAAGCCCGGCT+CGG + chr8_1:75103451-75103470 None:intergenic 45.0%
GGGCTTTGCTTAAATAGGCA+AGG - chr8_1:75103455-75103474 Msa1214480:intron 45.0%
AAAGCCTAAGCCTGACCTAT+TGG - chr8_1:75103494-75103513 Msa1214480:intron 45.0%
AAAGCCTTTGACAGGCCAAT+AGG + chr8_1:75103512-75103531 None:intergenic 45.0%
GTGTAGTTACACATATGGGC+CGG - chr8_1:75103773-75103792 Msa1214480:intron 45.0%
GGCTTATAGAGAAGCCTACT+AGG + chr8_1:75103808-75103827 None:intergenic 45.0%
ATCACATGTAGGGTGGGAAT+AGG + chr8_1:75103915-75103934 None:intergenic 45.0%
GTGTCTATCACATGTAGGGT+GGG + chr8_1:75103921-75103940 None:intergenic 45.0%
TGTGTCTATCACATGTAGGG+TGG + chr8_1:75103922-75103941 None:intergenic 45.0%
TGCTTTCGTTTGTGGCTGTT+TGG - chr8_1:75104078-75104097 Msa1214480:intron 45.0%
AAAACGCTCTTTGCCTACGA+AGG - chr8_1:75104321-75104340 Msa1214480:intron 45.0%
AGACAAGATCCATTGACACC+AGG - chr8_1:75104690-75104709 Msa1214480:intron 45.0%
CATTCATCCAATCGATCCTG+CGG - chr8_1:75105445-75105464 Msa1214480:intron 45.0%
ACTCGTGACAATTCCCTCTA+TGG - chr8_1:75105495-75105514 Msa1214480:intron 45.0%
GTGACAATTCCCTCTATGGT+TGG - chr8_1:75105499-75105518 Msa1214480:intron 45.0%
! ATTTTGTCTCTGACCTCCCT+CGG - chr8_1:75105575-75105594 Msa1214480:intron 45.0%
ATTTACAATGAGGCGGAGGT+AGG + chr8_1:75105632-75105651 None:intergenic 45.0%
CATCCGCATTTACAATGAGG+CGG + chr8_1:75105639-75105658 None:intergenic 45.0%
CAGCATCCGCATTTACAATG+AGG + chr8_1:75105642-75105661 None:intergenic 45.0%
CTCATTGTAAATGCGGATGC+TGG - chr8_1:75105640-75105659 Msa1214480:intron 45.0%
AGCCAACCATTGAAAAGGGT+CGG + chr8_1:75105704-75105723 None:intergenic 45.0%
GAACCAGCCAACCATTGAAA+AGG + chr8_1:75105709-75105728 None:intergenic 45.0%
TTTAGCACTTTCGTGGTGGT+TGG - chr8_1:75105741-75105760 Msa1214480:intron 45.0%
!!! CGTAGTGGTTTTAATGGTGC+TGG - chr8_1:75105807-75105826 Msa1214480:intron 45.0%
TCTGAATCCAGATCCGGATT+CGG + chr8_1:75105874-75105893 None:intergenic 45.0%
AATGATGCGTCTGTTTGCAG+TGG - chr8_1:75105928-75105947 Msa1214480:intron 45.0%
! TTACCACACACGGAGCTTTT+TGG - chr8_1:75106128-75106147 Msa1214480:intron 45.0%
TTTCCAAAAAGCTCCGTGTG+TGG + chr8_1:75106134-75106153 None:intergenic 45.0%
CGGTGATCTCAAAGGAAACT+CGG + chr8_1:75106188-75106207 None:intergenic 45.0%
AGTCACTTCGGTGATCTCAA+AGG + chr8_1:75106196-75106215 None:intergenic 45.0%
AGATCACCGAAGTGACTATG+AGG - chr8_1:75106199-75106218 Msa1214480:intron 45.0%
GGAAGTCCTCATAGTCACTT+CGG + chr8_1:75106208-75106227 None:intergenic 45.0%
! GGTGTTGCGTTGGGTTATTA+TGG - chr8_1:75106243-75106262 Msa1214480:intron 45.0%
AGACAACCCAGATCGAAGAA+AGG + chr8_1:75106416-75106435 None:intergenic 45.0%
GTTGTCTTCCCACTTTAGAC+CGG - chr8_1:75106429-75106448 Msa1214480:intron 45.0%
ACGAACCCGACAACAAAACA+CGG + chr8_1:75106464-75106483 None:intergenic 45.0%
! TTGTGTTGCTGCCTGTTTCT+TGG - chr8_1:75106502-75106521 Msa1214480:CDS 45.0%
AAACCACCTCACCAAGAAAC+AGG + chr8_1:75106516-75106535 None:intergenic 45.0%
TGTTTCTTGGTGAGGTGGTT+TGG - chr8_1:75106515-75106534 Msa1214480:CDS 45.0%
!!! CTCTATCGTTGGTTTTGCAG+TGG - chr8_1:75106552-75106571 Msa1214480:CDS 45.0%
!!! TTTTGCAGTGGTAGTGGTGA+TGG - chr8_1:75106564-75106583 Msa1214480:exon 45.0%
!! TGATTCAGTTGTGGTAGTGG+TGG - chr8_1:75106590-75106609 Msa1214480:five_prime_UTR 45.0%
!! GATTCAGTTGTGGTAGTGGT+GGG - chr8_1:75106591-75106610 Msa1214480:five_prime_UTR 45.0%
!! ATTCAGTTGTGGTAGTGGTG+GGG - chr8_1:75106592-75106611 Msa1214480:five_prime_UTR 45.0%
TAGCGTCAAATGACGCTCCT+TGG + chr8_1:75101286-75101305 None:intergenic 50.0%
CGTTCTTTGCCTACGAAGGA+TGG - chr8_1:75101376-75101395 Msa1214480:CDS 50.0%
!! GTCCGTATCGACTAACGTGT+CGG - chr8_1:75102016-75102035 Msa1214480:intron 50.0%
TGTCGCGCGTAACAGTAAAG+AGG + chr8_1:75102738-75102757 None:intergenic 50.0%
GAGCCGGGCTTTGCTTAAAT+AGG - chr8_1:75103450-75103469 Msa1214480:intron 50.0%
CTTTGACAGGCCAATAGGTC+AGG + chr8_1:75103507-75103526 None:intergenic 50.0%
! CTGACCTATTGGCCTGTCAA+AGG - chr8_1:75103505-75103524 Msa1214480:intron 50.0%
CCATTGACACCAGGTGTCAA+CGG - chr8_1:75104699-75104718 Msa1214480:intron 50.0%
TCAACGAATCCGTTGACACC+TGG + chr8_1:75104711-75104730 None:intergenic 50.0%
GGAGATGAGTTACTGTTCGC+AGG - chr8_1:75105520-75105539 Msa1214480:intron 50.0%
! AGGTTGGATTAGGAGGGAGA+GGG + chr8_1:75105612-75105631 None:intergenic 50.0%
! TAGGTTGGATTAGGAGGGAG+AGG + chr8_1:75105613-75105632 None:intergenic 50.0%
! GGAGGTAGGTTGGATTAGGA+GGG + chr8_1:75105618-75105637 None:intergenic 50.0%
CCTCCGCCTCATTGTAAATG+CGG - chr8_1:75105633-75105652 Msa1214480:intron 50.0%
TTGTAAATGCGGATGCTGGG+TGG - chr8_1:75105644-75105663 Msa1214480:intron 50.0%
! TCACTCCCGACCCTTTTCAA+TGG - chr8_1:75105695-75105714 Msa1214480:intron 50.0%
! TCCCGACCCTTTTCAATGGT+TGG - chr8_1:75105699-75105718 Msa1214480:intron 50.0%
GCCAACCATTGAAAAGGGTC+GGG + chr8_1:75105703-75105722 None:intergenic 50.0%
! GACCCTTTTCAATGGTTGGC+TGG - chr8_1:75105703-75105722 Msa1214480:intron 50.0%
!! TTCAATGGTTGGCTGGTTCG+TGG - chr8_1:75105710-75105729 Msa1214480:intron 50.0%
!! TGTTGGTGGTGGTTTCGTAG+TGG - chr8_1:75105792-75105811 Msa1214480:intron 50.0%
!!! GTGGTTTTAATGGTGCTGGG+CGG - chr8_1:75105811-75105830 Msa1214480:intron 50.0%
TTTCGATCCGAATCCGGATC+TGG - chr8_1:75105864-75105883 Msa1214480:intron 50.0%
GACGGATCTGAATCCAGATC+CGG + chr8_1:75105880-75105899 None:intergenic 50.0%
GGATCTGGATTCAGATCCGT+CGG - chr8_1:75105879-75105898 Msa1214480:intron 50.0%
AAAACCCTTTCAGCCACCGA+CGG + chr8_1:75105898-75105917 None:intergenic 50.0%
!!! ATGGTGTTTTGGGGGTTGAG+TGG - chr8_1:75106274-75106293 Msa1214480:intron 50.0%
!! AGAGCGGTGGTGGTGATTTT+AGG - chr8_1:75106306-75106325 Msa1214480:intron 50.0%
AAACGCCTTCTCCTTGTCAG+TGG - chr8_1:75106384-75106403 Msa1214480:intron 50.0%
CAACCCAGATCGAAGAAAGG+CGG + chr8_1:75106413-75106432 None:intergenic 50.0%
CGAACCCGACAACAAAACAC+GGG + chr8_1:75106463-75106482 None:intergenic 50.0%
! TTGCTGCCTGTTTCTTGGTG+AGG - chr8_1:75106507-75106526 Msa1214480:CDS 50.0%
!!! CGTTGGTTTTGCAGTGGTAG+TGG - chr8_1:75106558-75106577 Msa1214480:CDS 50.0%
!! CAGAGGTGTCCATCCTTCGT+AGG + chr8_1:75101388-75101407 None:intergenic 55.0%
CTACGAAGGATGGACACCTC+TGG - chr8_1:75101386-75101405 Msa1214480:CDS 55.0%
CCTGGCACGATTAATGCCAG+AGG + chr8_1:75101405-75101424 None:intergenic 55.0%
CCTCTGGCATTAATCGTGCC+AGG - chr8_1:75101402-75101421 Msa1214480:CDS 55.0%
TCGGATGTCTGTGTCACGTC+AGG - chr8_1:75102035-75102054 Msa1214480:intron 55.0%
GTCACGTCAGGTGTCTGTGT+CGG - chr8_1:75102047-75102066 Msa1214480:intron 55.0%
AGACCATGTGGGGTGGGAAT+AGG - chr8_1:75103420-75103439 Msa1214480:intron 55.0%
CAGGCCAATAGGTCAGGCTT+AGG + chr8_1:75103501-75103520 None:intergenic 55.0%
AGAAGCCTACTAGGCCTACC+AGG + chr8_1:75103799-75103818 None:intergenic 55.0%
!! GGTCGAGCCGAGCTTTAAGT+AGG - chr8_1:75103858-75103877 Msa1214480:intron 55.0%
!! GAGCCGAGCTTTAAGTAGGC+CGG - chr8_1:75103862-75103881 Msa1214480:intron 55.0%
!! AGCCGAGCTTTAAGTAGGCC+GGG - chr8_1:75103863-75103882 Msa1214480:intron 55.0%
ATGTAGGGTGGGAATAGGCC+AGG + chr8_1:75103910-75103929 None:intergenic 55.0%
CGCTCTTTGCCTACGAAGGT+TGG - chr8_1:75104325-75104344 Msa1214480:intron 55.0%
CAGAGGTGACCAACCTTCGT+AGG + chr8_1:75104337-75104356 None:intergenic 55.0%
! CTACGAAGGTTGGTCACCTC+TGG - chr8_1:75104335-75104354 Msa1214480:intron 55.0%
CCTGGCACGATTAATGCCAG+AGG + chr8_1:75101405-75101424 None:intergenic 55.0%
CCTCTGGCATTAATCGTGCC+AGG - chr8_1:75101402-75101421 Msa1214480:CDS 55.0%
! CCGTTGACACCTGGTGTCAA+TGG + chr8_1:75104702-75104721 None:intergenic 55.0%
GAGGGCAACGTGTATACCGA+GGG + chr8_1:75105594-75105613 None:intergenic 55.0%
AGAGGGCAACGTGTATACCG+AGG + chr8_1:75105595-75105614 None:intergenic 55.0%
! CGGAGGTAGGTTGGATTAGG+AGG + chr8_1:75105619-75105638 None:intergenic 55.0%
! AGGCGGAGGTAGGTTGGATT+AGG + chr8_1:75105622-75105641 None:intergenic 55.0%
ACAATGAGGCGGAGGTAGGT+TGG + chr8_1:75105628-75105647 None:intergenic 55.0%
CCGCATTTACAATGAGGCGG+AGG + chr8_1:75105636-75105655 None:intergenic 55.0%
! GCTGGGTGGTGCAAGGATTT+TGG - chr8_1:75105658-75105677 Msa1214480:intron 55.0%
GAAAAGGGTCGGGAGTGATG+CGG + chr8_1:75105693-75105712 None:intergenic 55.0%
ACTTTCGTGGTGGTTGGCAG+TGG - chr8_1:75105747-75105766 Msa1214480:intron 55.0%
GTGGTCCTTGGAGGATTTCG+TGG - chr8_1:75105766-75105785 Msa1214480:intron 55.0%
GTCCTTGGAGGATTTCGTGG+TGG - chr8_1:75105769-75105788 Msa1214480:intron 55.0%
CACCACCACGAAATCCTCCA+AGG + chr8_1:75105774-75105793 None:intergenic 55.0%
! GGAGGATTTCGTGGTGGTGT+TGG - chr8_1:75105775-75105794 Msa1214480:intron 55.0%
! GGATTTCGTGGTGGTGTTGG+TGG - chr8_1:75105778-75105797 Msa1214480:intron 55.0%
!! TTTCGTGGTGGTGTTGGTGG+TGG - chr8_1:75105781-75105800 Msa1214480:intron 55.0%
TCTGGATTCAGATCCGTCGG+TGG - chr8_1:75105882-75105901 Msa1214480:intron 55.0%
AGATCCGTCGGTGGCTGAAA+GGG - chr8_1:75105891-75105910 Msa1214480:intron 55.0%
!!! GTGTTTTGGGGGTTGAGTGG+TGG - chr8_1:75106277-75106296 Msa1214480:intron 55.0%
TGAGTGGTGGCTCGAAAGAG+CGG - chr8_1:75106290-75106309 Msa1214480:intron 55.0%
!! GGAGAAGGCGTTTGAGATCG+TGG + chr8_1:75106377-75106396 None:intergenic 55.0%
TGGCCGCCTTTCTTCGATCT+GGG - chr8_1:75106407-75106426 Msa1214480:intron 55.0%
!! CGCTGCCCGTGTTTTGTTGT+CGG - chr8_1:75106455-75106474 Msa1214480:intron 55.0%
!! GCTGCCCGTGTTTTGTTGTC+GGG - chr8_1:75106456-75106475 Msa1214480:intron 55.0%
! CTGCCTGTTTCTTGGTGAGG+TGG - chr8_1:75106510-75106529 Msa1214480:CDS 55.0%
!! ATAGTGGTGGATGTGCGGTG+TGG - chr8_1:75106616-75106635 Msa1214480:five_prime_UTR 55.0%
!! TCGTACGGGTGACGGAAACC+TGG + chr8_1:75101423-75101442 None:intergenic 60.0%
GTGTCTGACACGCGTCGTAC+GGG + chr8_1:75101437-75101456 None:intergenic 60.0%
CGTGTCTGACACGCGTCGTA+CGG + chr8_1:75101438-75101457 None:intergenic 60.0%
CATGTGGGGTGGGAATAGGC+CGG - chr8_1:75103424-75103443 Msa1214480:intron 60.0%
ATGTGGGGTGGGAATAGGCC+GGG - chr8_1:75103425-75103444 Msa1214480:intron 60.0%
GTTACACATATGGGCCGGCC+TGG - chr8_1:75103778-75103797 Msa1214480:intron 60.0%
GGCCCGGCCTACTTAAAGCT+CGG + chr8_1:75103868-75103887 None:intergenic 60.0%
TCGTACGGGAGTCGGAAACC+TGG + chr8_1:75104372-75104391 None:intergenic 60.0%
ACGTCTGACACGCGTCGTAC+GGG + chr8_1:75104386-75104405 None:intergenic 60.0%
CACGTCTGACACGCGTCGTA+CGG + chr8_1:75104387-75104406 None:intergenic 60.0%
GGAATCGCCGCAGGATCGAT+TGG + chr8_1:75105455-75105474 None:intergenic 60.0%
GTTACGACTGGAATCGCCGC+AGG + chr8_1:75105464-75105483 None:intergenic 60.0%
GGCAACGTGTATACCGAGGG+AGG + chr8_1:75105591-75105610 None:intergenic 60.0%
TGGTGGTTGGCAGTGGTCCT+TGG - chr8_1:75105754-75105773 Msa1214480:intron 60.0%
TGGTTGGCAGTGGTCCTTGG+AGG - chr8_1:75105757-75105776 Msa1214480:intron 60.0%
! GGTGCTGGGCGGATAGATTG+TGG - chr8_1:75105822-75105841 Msa1214480:intron 60.0%
GCTGGGCGGATAGATTGTGG+AGG - chr8_1:75105825-75105844 Msa1214480:intron 60.0%
CAGATCCGTCGGTGGCTGAA+AGG - chr8_1:75105890-75105909 Msa1214480:intron 60.0%
CGCCTTCTCCTTGTCAGTGG+TGG - chr8_1:75106387-75106406 Msa1214480:intron 60.0%
GGCCACCACTGACAAGGAGA+AGG + chr8_1:75106392-75106411 None:intergenic 60.0%
AAAGGCGGCCACCACTGACA+AGG + chr8_1:75106398-75106417 None:intergenic 60.0%
GTGGCCGCCTTTCTTCGATC+TGG - chr8_1:75106406-75106425 Msa1214480:intron 60.0%
! CAGCGACGCCGGTCTAAAGT+GGG + chr8_1:75106440-75106459 None:intergenic 60.0%
!! GTGGTAGTGGTGGGGCATAG+TGG - chr8_1:75106600-75106619 Msa1214480:five_prime_UTR 60.0%
! GTAGTGGTGGGGCATAGTGG+TGG - chr8_1:75106603-75106622 Msa1214480:five_prime_UTR 60.0%
!! GGGGCATAGTGGTGGATGTG+CGG - chr8_1:75106611-75106630 Msa1214480:five_prime_UTR 60.0%
GACACGCGTCGTACGGGTGA+CGG + chr8_1:75101431-75101450 None:intergenic 65.0%
CGGCCTATTCCCACCCCACA+TGG + chr8_1:75103426-75103445 None:intergenic 65.0%
CACATATGGGCCGGCCTGGT+AGG - chr8_1:75103782-75103801 Msa1214480:intron 65.0%
GCCTACTAGGCCTACCAGGC+CGG + chr8_1:75103795-75103814 None:intergenic 65.0%
CTCGTCAGGGGTCTATGGCC+CGG + chr8_1:75103884-75103903 None:intergenic 65.0%
GGCCATAGACCCCTGACGAG+CGG - chr8_1:75103884-75103903 Msa1214480:intron 65.0%
ATAGGCCAGGCCGCTCGTCA+GGG + chr8_1:75103897-75103916 None:intergenic 65.0%
AATAGGCCAGGCCGCTCGTC+AGG + chr8_1:75103898-75103917 None:intergenic 65.0%
GACACGCGTCGTACGGGAGT+CGG + chr8_1:75104380-75104399 None:intergenic 65.0%
TGCGGATGCTGGGTGGTGCA+AGG - chr8_1:75105651-75105670 Msa1214480:intron 65.0%
AGGGTCGGGAGTGATGCGGA+CGG + chr8_1:75105689-75105708 None:intergenic 65.0%
GTGGTGGCTCGAAAGAGCGG+TGG - chr8_1:75106293-75106312 Msa1214480:intron 65.0%
GTGGCTCGAAAGAGCGGTGG+TGG - chr8_1:75106296-75106315 Msa1214480:intron 65.0%
GCAGCGACGCCGGTCTAAAG+TGG + chr8_1:75106441-75106460 None:intergenic 65.0%
CAAAACACGGGCAGCGACGC+CGG + chr8_1:75106451-75106470 None:intergenic 65.0%
!! GTGGTGGATGTGCGGTGTGG+TGG - chr8_1:75106619-75106638 Msa1214480:five_prime_UTR 65.0%
GTGGATGTGCGGTGTGGTGG+TGG - chr8_1:75106622-75106641 Msa1214480:five_prime_UTR 65.0%
!! GATGTGCGGTGTGGTGGTGG+TGG - chr8_1:75106625-75106644 Msa1214480:five_prime_UTR 65.0%
!! AAGCAAAGCCCGGCTCGGCC+CGG + chr8_1:75103446-75103465 None:intergenic 70.0%
GCCGGCCTGGTAGGCCTAGT+AGG - chr8_1:75103791-75103810 Msa1214480:intron 70.0%
GGCCGCTCGTCAGGGGTCTA+TGG + chr8_1:75103889-75103908 None:intergenic 70.0%
TAGACCCCTGACGAGCGGCC+TGG - chr8_1:75103889-75103908 Msa1214480:intron 70.0%
TAGGCCAGGCCGCTCGTCAG+GGG + chr8_1:75103896-75103915 None:intergenic 70.0%
GGGAATAGGCCGGGCCGAGC+CGG - chr8_1:75103434-75103453 Msa1214480:intron 75.0%
GGAATAGGCCGGGCCGAGCC+GGG - chr8_1:75103435-75103454 Msa1214480:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 75101177 75106650 75101177 ID=Msa1214480;Name=Msa1214480
chr8_1 mRNA 75101177 75106650 75101177 ID=Msa1214480-mRNA-1;Parent=Msa1214480;Name=Msa1214480-mRNA-1;_AED=0.37;_eAED=0.37;_QI=69|0.28|0.25|1|1|1|8|0|345
chr8_1 exon 75101177 75101255 75101177 ID=Msa1214480-mRNA-1:exon:25824;Parent=Msa1214480-mRNA-1
chr8_1 exon 75101350 75101423 75101350 ID=Msa1214480-mRNA-1:exon:25823;Parent=Msa1214480-mRNA-1
chr8_1 exon 75101510 75101835 75101510 ID=Msa1214480-mRNA-1:exon:25822;Parent=Msa1214480-mRNA-1
chr8_1 exon 75101927 75102015 75101927 ID=Msa1214480-mRNA-1:exon:25821;Parent=Msa1214480-mRNA-1
chr8_1 exon 75102111 75102285 75102111 ID=Msa1214480-mRNA-1:exon:25820;Parent=Msa1214480-mRNA-1
chr8_1 exon 75103539 75103640 75103539 ID=Msa1214480-mRNA-1:exon:25819;Parent=Msa1214480-mRNA-1
chr8_1 exon 75105327 75105425 75105327 ID=Msa1214480-mRNA-1:exon:25818;Parent=Msa1214480-mRNA-1
chr8_1 exon 75106488 75106650 75106488 ID=Msa1214480-mRNA-1:exon:25817;Parent=Msa1214480-mRNA-1
chr8_1 five_prime_UTR 75106582 75106650 75106582 ID=Msa1214480-mRNA-1:five_prime_utr;Parent=Msa1214480-mRNA-1
chr8_1 CDS 75106488 75106581 75106488 ID=Msa1214480-mRNA-1:cds;Parent=Msa1214480-mRNA-1
chr8_1 CDS 75105327 75105425 75105327 ID=Msa1214480-mRNA-1:cds;Parent=Msa1214480-mRNA-1
chr8_1 CDS 75103539 75103640 75103539 ID=Msa1214480-mRNA-1:cds;Parent=Msa1214480-mRNA-1
chr8_1 CDS 75102111 75102285 75102111 ID=Msa1214480-mRNA-1:cds;Parent=Msa1214480-mRNA-1
chr8_1 CDS 75101927 75102015 75101927 ID=Msa1214480-mRNA-1:cds;Parent=Msa1214480-mRNA-1
chr8_1 CDS 75101510 75101835 75101510 ID=Msa1214480-mRNA-1:cds;Parent=Msa1214480-mRNA-1
chr8_1 CDS 75101350 75101423 75101350 ID=Msa1214480-mRNA-1:cds;Parent=Msa1214480-mRNA-1
chr8_1 CDS 75101177 75101255 75101177 ID=Msa1214480-mRNA-1:cds;Parent=Msa1214480-mRNA-1
Gene Sequence

>Msa1214480

ATGAAGCGTCTCTCAGAAAACAACAAACGTGAAGTTTCCAAGGAGCGTCATTTGACGCTAAAATCATCACTTGCTAAGATGAAAAAAGGAGAAAAATTGGCTGAGCATCACTCAAAAAACAGCAAAAATGAAGTTTTTAAGAAGCCTTATTTGAAGTTCAAATCGTCTCTTGCTAAGCAGAAAAAAGGAGAAAAATTTGCTATGAAGCGTCTCTCAGAAAACAATAAAAGTGAAGTTTCTAAGGAGCCTCATTTGACGCTAAAATCATCACTTGCTAAGATGAAAAAAGGAGAAAGTTATAGTTTTAGAAAAAAACATACTTTAGAAAATTTTGTCTCTGACCTCCCTCGGTATACACGTTGCCCTCTCCCTCCTAATCCAACCTACCTCCGCCTCATTGTAAATGCGGATGCTGGGTGGTGCAAGGATTTTGGCTTAGCCGTCCGCATCACTCCCGACCCTTTTCAATGTGGTTTTAATGGTGCTGGGCGGATAGATTGTGGAGGTAGATCTGGATTCAAATTTCGATCCGAATCCGGATCTGGATTCAGATCCGTCGTGTGGCATTGTTGCTCTTCTTTTGAGTTCGGCTCACTTCTTGTTACTTATATGGTTTTGCTTGCTTGTGAGACTACTCTTTGTACTCATATGTTGTTTTGTATAGCCTTTCAGCTGGTCACTAATTATAAGGGTGATTACCACACACGGAGCTTTTTGGAAATAAGTATTGGAGTTGGGAGCTTATTTTTCATCCGAGTTTCCTTTGAGATCACCGAAGTGACTATGAGGACTTCCAAACGAGACATTTTTGGTGTTGCGTTGGGTTATTATGGTGTCTTTCATGGTGTTTTGGGGGTTGAGTGGTGGCTCGAAAGAGCGGTGGTGTGGTGGCCGCCTTTCTTCGATCTGGGTTGTCTTCCCACTTTAGACCGGCGTCGCTGCCCGTGTTTTGTTGTCGGTGGTAGTGGTGATGGTGATGATTCAGTTGTGGTAGTGGTGGGGCATAGTGGTGGATGTGCGGTGTGGTGGTGGTGGTGA

Protein sequence

>Msa1214480

MKRLSENNKREVSKERHLTLKSSLAKMKKGEKLAEHHSKNSKNEVFKKPYLKFKSSLAKQKKGEKFAMKRLSENNKSEVSKEPHLTLKSSLAKMKKGESYSFRKKHTLENFVSDLPRYTRCPLPPNPTYLRLIVNADAGWCKDFGLAVRITPDPFQCGFNGAGRIDCGGRSGFKFRSESGSGFRSVVWHCCSSFEFGSLLVTYMVLLACETTLCTHMLFCIAFQLVTNYKGDYHTRSFLEISIGVGSLFFIRVSFEITEVTMRTSKRDIFGVALGYYGVFHGVLGVEWWLERAVVWWPPFFDLGCLPTLDRRRCPCFVVGGSGDGDDSVVVVVGHSGGCAVWWWW*