AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0647750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647750 MtrunA17_Chr4g0039081 98.916 369 4 0 1 369 1 369 0.0 743
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647750 AT5G08280.1 80.352 341 56 2 37 369 45 382 0.0 561

Find 112 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTAAAACTTCACTATTTC+AGG 0.139531 4_3:-53846368 None:intergenic
ATTGCAATTGGCAATGTAAT+TGG 0.182846 4_3:+53843281 Msa0647750:five_prime_UTR
CAATAGGTGGTTCTGGATTC+TGG 0.184578 4_3:+53846413 Msa0647750:three_prime_UTR
ATAGATGAAGCACTCATAAA+TGG 0.266891 4_3:+53844562 Msa0647750:CDS
CTACCGGCTGGAAGTGTTAT+TGG 0.289880 4_3:+53844721 Msa0647750:CDS
AATTCTAATAATCGCAGTTT+TGG 0.297866 4_3:-53843632 None:intergenic
GAAATTTCAATAGGTGGTTC+TGG 0.300079 4_3:+53846406 Msa0647750:three_prime_UTR
CTGATACGACATTTGGAAAA+AGG 0.322162 4_3:-53843574 None:intergenic
TCTTGCCGAACGCCTATTGC+AGG 0.323184 4_3:+53845889 Msa0647750:CDS
GGCTATTCCAATTGCACCTT+GGG 0.335647 4_3:-53845420 None:intergenic
GATGGAAATTGCTTGTTTAG+AGG 0.343657 4_3:+53845931 Msa0647750:CDS
GAAGGATTGGAAGGTGTAGA+AGG 0.351735 4_3:-53843502 None:intergenic
GTGCTTGAAACTTCCAGAAT+TGG 0.358982 4_3:+53846070 Msa0647750:intron
AGTTGTCAAAGCTACCTTAT+TGG 0.360503 4_3:+53845316 Msa0647750:CDS
AGTGTTGAAACTTATAATCT+AGG 0.369974 4_3:-53846187 None:intergenic
CAGTCCAGCTAGAGCCAATA+AGG 0.371368 4_3:-53845330 None:intergenic
TAGAAGTAATGATGATAAAA+TGG 0.372536 4_3:+53845445 Msa0647750:CDS
AAAACTGCGATTATTAGAAT+TGG 0.380075 4_3:+53843634 Msa0647750:CDS
CTTCTTTCTCGAGCTGGACC+TGG 0.382803 4_3:+53846145 Msa0647750:CDS
ATAAGCATAAGGACCAATTC+TGG 0.397488 4_3:-53846083 None:intergenic
GAGAAGGAAAGGGGAAGGAT+TGG 0.401621 4_3:-53843515 None:intergenic
CTTAACACGGAAATTTCAAT+AGG 0.404152 4_3:+53846397 Msa0647750:three_prime_UTR
TTTCAACTGAACTCCTCATC+AGG 0.407221 4_3:+53846285 Msa0647750:three_prime_UTR
TTAGAGCAGTCCACTAGCTT+TGG 0.407368 4_3:+53844384 Msa0647750:intron
TTTATCATCATTACTTCTAC+AGG 0.410377 4_3:-53845441 None:intergenic
TTGCAATTGGCAATGTAATT+GGG 0.414516 4_3:+53843282 Msa0647750:five_prime_UTR
AAGAGCCTTCCTTACGACTT+TGG 0.415933 4_3:+53845861 Msa0647750:CDS
GCTGTTGCCCAAGGTGCAAT+TGG 0.417047 4_3:+53845413 Msa0647750:CDS
TAGATGAAGCACTCATAAAT+GGG 0.423935 4_3:+53844563 Msa0647750:CDS
CTGCTAGCATACCCTGCAAT+AGG 0.427411 4_3:-53845901 None:intergenic
CTCAATCGGTAACACAGATA+TGG 0.428500 4_3:+53846208 Msa0647750:three_prime_UTR
TTCATACCACGGGTTCCATC+GGG 0.433712 4_3:-53845967 None:intergenic
TTGAAATTTCCGTGTTAAGC+AGG 0.434990 4_3:-53846393 None:intergenic
GGAAGCTCTGATACGACATT+TGG 0.445537 4_3:-53843581 None:intergenic
TGAACTATTTCACACTCAAA+TGG 0.448638 4_3:+53843444 Msa0647750:exon
ACATATAATAAGATTGCAAT+TGG 0.449693 4_3:+53843269 None:intergenic
AGAATGCAGAAGAGGAAGAA+AGG 0.466442 4_3:-53843474 None:intergenic
AATCTGAATAGCCCCTTCTT+CGG 0.467642 4_3:-53844458 None:intergenic
GAGGAGCTTCTTTCTCGAGC+TGG 0.476446 4_3:+53846139 Msa0647750:CDS
CATACAGAGTTAGCCGAAGA+AGG 0.479546 4_3:+53844445 Msa0647750:CDS
ATCATATCTTCATAAGCATA+AGG 0.480067 4_3:-53846094 None:intergenic
GCCTTCCTTACGACTTTGGA+TGG 0.480690 4_3:+53845865 Msa0647750:CDS
TATAAGTTTCAACACTCAAT+CGG 0.487974 4_3:+53846194 Msa0647750:three_prime_UTR
ATTGCACCTTGGGCAACAGC+TGG 0.489725 4_3:-53845410 None:intergenic
GTTCATACCACGGGTTCCAT+CGG 0.490215 4_3:-53845968 None:intergenic
GAATGCAGAAGAGGAAGAAA+GGG 0.492559 4_3:-53843473 None:intergenic
GATGGGTAAGGATGCGGGTG+AGG 0.498552 4_3:+53846120 Msa0647750:CDS
GCTACCTTATTGGCTCTAGC+TGG 0.499498 4_3:+53845326 Msa0647750:CDS
ATGAAGATGGGTAAGGATGC+GGG 0.500619 4_3:+53846115 Msa0647750:CDS
CAAGAAGAACTGAGAAGGAA+AGG 0.502363 4_3:-53843526 None:intergenic
AAGAAGAACTGAGAAGGAAA+GGG 0.502979 4_3:-53843525 None:intergenic
AGGAAGAGAGAATGCAGAAG+AGG 0.515566 4_3:-53843482 None:intergenic
ATTGGCAATGTAATTGGGTA+AGG 0.515612 4_3:+53843287 Msa0647750:five_prime_UTR
AGGAAAGGGGAAGGATTGGA+AGG 0.521629 4_3:-53843511 None:intergenic
ATCTCTAAGATAGAGCTTGT+GGG 0.525074 4_3:-53843315 None:intergenic
TCCTCTCGTGGAAGGTTGCA+TGG 0.526187 4_3:-53844652 None:intergenic
AGGCTATTCCAATTGCACCT+TGG 0.526245 4_3:-53845421 None:intergenic
AACACGGAAATTTCAATAGG+TGG 0.527729 4_3:+53846400 Msa0647750:three_prime_UTR
CGTAAGGAAGGCTCTTTCAC+AGG 0.530222 4_3:-53845854 None:intergenic
GATCTCTAAGATAGAGCTTG+TGG 0.534871 4_3:-53843316 None:intergenic
GAACTGAGAAGGAAAGGGGA+AGG 0.541355 4_3:-53843520 None:intergenic
TTGGTACCGCATCACTTAGA+CGG 0.546923 4_3:+53844740 Msa0647750:CDS
TCCGTGGAAATGTGCAAACA+AGG 0.548138 4_3:+53845273 Msa0647750:CDS
CTCTGACATCCTCTCGTGGA+AGG 0.548713 4_3:-53844660 None:intergenic
TCACTAGGTGATCTACCGGC+TGG 0.549656 4_3:+53844709 Msa0647750:CDS
TCGCAACCGCTTGCAGACAT+AGG 0.549665 4_3:+53844514 Msa0647750:CDS
GCCTTGTTTGCACATTTCCA+CGG 0.551589 4_3:-53845274 None:intergenic
TTAGAATTGGTACTAGAGGA+AGG 0.555106 4_3:+53843647 Msa0647750:CDS
GCAACAATTAAAATATATGT+TGG 0.555727 4_3:+53846445 Msa0647750:three_prime_UTR
ATACAGAGTTAGCCGAAGAA+GGG 0.556716 4_3:+53844446 Msa0647750:CDS
AGCTTCACTAGGTGATCTAC+CGG 0.558112 4_3:+53844705 Msa0647750:CDS
GATGAAGATGGGTAAGGATG+CGG 0.558385 4_3:+53846114 Msa0647750:CDS
CATACCCTGCAATAGGCGTT+CGG 0.559656 4_3:-53845894 None:intergenic
CAGTCCACTAGCTTTGGCTC+AGG 0.560597 4_3:+53844390 Msa0647750:intron
CAACCGCTTGCAGACATAGG+TGG 0.565596 4_3:+53844517 Msa0647750:CDS
TATGAAGATATGATGAAGAT+GGG 0.569266 4_3:+53846103 Msa0647750:CDS
CACCAGCTTACACTTAGAGA+TGG 0.571883 4_3:-53844787 None:intergenic
GCCATGCAACCTTCCACGAG+AGG 0.571886 4_3:+53844651 Msa0647750:CDS
GCAATGTAATTGGGTAAGGT+AGG 0.575938 4_3:+53843291 Msa0647750:five_prime_UTR
TGTGCCTGAGCCAAAGCTAG+TGG 0.577115 4_3:-53844394 None:intergenic
ACCATCCAAAGTCGTAAGGA+AGG 0.584751 4_3:-53845866 None:intergenic
ATTATTAGAATTGGTACTAG+AGG 0.585168 4_3:+53843643 Msa0647750:CDS
TTTAGAATTCCTGCTTAACA+CGG 0.586071 4_3:+53846384 Msa0647750:three_prime_UTR
AACCGCTTGCAGACATAGGT+GGG 0.586462 4_3:+53844518 Msa0647750:CDS
AAGAACCATCCAAAGTCGTA+AGG 0.589630 4_3:-53845870 None:intergenic
TTATGAAGATATGATGAAGA+TGG 0.590771 4_3:+53846102 Msa0647750:CDS
GCTTGCAGACATAGGTGGGA+AGG 0.591309 4_3:+53844522 Msa0647750:CDS
TCATTGAGTGCAGCTTCACT+AGG 0.592878 4_3:+53844694 Msa0647750:CDS
TGATTTCCGTCTAAGTGATG+CGG 0.594402 4_3:-53844746 None:intergenic
CTTGCCGAACGCCTATTGCA+GGG 0.597053 4_3:+53845890 Msa0647750:CDS
CGTCTGTTGCTCAACAGCAA+CGG 0.602185 4_3:-53843602 None:intergenic
ATGCTTCCAGCTGTTGCCCA+AGG 0.607443 4_3:+53845404 Msa0647750:CDS
AGGGACAAGAAGAACTGAGA+AGG 0.608902 4_3:-53843531 None:intergenic
AGATATGATGAAGATGGGTA+AGG 0.614306 4_3:+53846108 Msa0647750:CDS
GCATCTCTGACATCCTCTCG+TGG 0.614964 4_3:-53844664 None:intergenic
TTCCCACCTATGTCTGCAAG+CGG 0.617157 4_3:-53844520 None:intergenic
AAGGCTTAGAAAACTAAGTG+AGG 0.619745 4_3:+53845292 Msa0647750:CDS
CACTTAGAGATGGATATCTG+TGG 0.621615 4_3:-53844777 None:intergenic
AGAAGAACTGAGAAGGAAAG+GGG 0.621960 4_3:-53843524 None:intergenic
TACAGAGTTAGCCGAAGAAG+GGG 0.622163 4_3:+53844447 Msa0647750:CDS
CTTGCAGACATAGGTGGGAA+GGG 0.623209 4_3:+53844523 Msa0647750:CDS
CATACCACGGGTTCCATCGG+GGG 0.623605 4_3:-53845965 None:intergenic
AGGCTTAGAAAACTAAGTGA+GGG 0.625173 4_3:+53845293 Msa0647750:CDS
ACAACAATTTGATCCTGATG+AGG 0.645416 4_3:-53846298 None:intergenic
CAGGTGCAAGATAATTTCCG+TGG 0.647977 4_3:+53845257 Msa0647750:intron
AGGGTATGCTAGCAGAGACA+AGG 0.654347 4_3:+53845909 Msa0647750:CDS
ATCGGTAACACAGATATGGT+AGG 0.655211 4_3:+53846212 Msa0647750:three_prime_UTR
TATGCTAGCAGAGACAAGGA+TGG 0.659151 4_3:+53845913 Msa0647750:CDS
AGATGAAGCACTCATAAATG+GGG 0.661644 4_3:+53844564 Msa0647750:CDS
TTAGAGATGGATATCTGTGG+AGG 0.669578 4_3:-53844774 None:intergenic
TCATACCACGGGTTCCATCG+GGG 0.679110 4_3:-53845966 None:intergenic
GTACCAATAACACTTCCAGC+CGG 0.706296 4_3:-53844724 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAAAAATCAATAATAAT+CGG - chr4_3:53845219-53845238 None:intergenic 10.0%
!! CAATAAATATTACAAAAATT+TGG - chr4_3:53846346-53846365 None:intergenic 10.0%
!!! TTTTTTGGCATTTATTTTAA+TGG + chr4_3:53843888-53843907 Msa0647750:intron 15.0%
!!! TTTTTGGCATTTATTTTAAT+GGG + chr4_3:53843889-53843908 Msa0647750:intron 15.0%
!! TAAAACAAAATACTGATATA+TGG - chr4_3:53844077-53844096 None:intergenic 15.0%
!!! TTAGAAGATAATTTTAGAAA+GGG + chr4_3:53844150-53844169 Msa0647750:intron 15.0%
!! AATCATTTAACTAATAGTAT+GGG - chr4_3:53844320-53844339 None:intergenic 15.0%
!! TAATCATTTAACTAATAGTA+TGG - chr4_3:53844321-53844340 None:intergenic 15.0%
!! ATTGTAATAATAAAAACAAC+CGG + chr4_3:53844478-53844497 Msa0647750:CDS 15.0%
!!! AAATCATAATCATTTTCTAA+TGG + chr4_3:53844861-53844880 Msa0647750:intron 15.0%
!!! AATCATAATCATTTTCTAAT+GGG + chr4_3:53844862-53844881 Msa0647750:intron 15.0%
!! AATATAAATTCTCAGATATT+GGG - chr4_3:53845669-53845688 None:intergenic 15.0%
!!! TCAAATTGTTGTATTTTATT+AGG + chr4_3:53846309-53846328 Msa0647750:three_prime_UTR 15.0%
!!! TTTGCAATTTCAAAATTTTT+AGG - chr4_3:53846521-53846540 None:intergenic 15.0%
!!! AAATTTTGAAATTGCAAAAA+AGG + chr4_3:53846523-53846542 Msa0647750:three_prime_UTR 15.0%
!!! AATTTTGAAATTGCAAAAAA+GGG + chr4_3:53846524-53846543 Msa0647750:three_prime_UTR 15.0%
!!! CTCAAATTTGCATTTTTTTT+TGG + chr4_3:53843873-53843892 Msa0647750:intron 20.0%
!!! ATTGTTATTGTCAAAAGAAA+AGG + chr4_3:53843998-53844017 Msa0647750:intron 20.0%
!!! TTGTTATTGTCAAAAGAAAA+GGG + chr4_3:53843999-53844018 Msa0647750:intron 20.0%
!!! CTTAGAAGATAATTTTAGAA+AGG + chr4_3:53844149-53844168 Msa0647750:intron 20.0%
!! TAACAAAAGAAACCAAATAT+GGG - chr4_3:53844267-53844286 None:intergenic 20.0%
!! ATAACAAAAGAAACCAAATA+TGG - chr4_3:53844268-53844287 None:intergenic 20.0%
!!! ATATTTGGTTTCTTTTGTTA+TGG + chr4_3:53844267-53844286 Msa0647750:intron 20.0%
!! TTGAGTTAATAAACAAACAT+TGG + chr4_3:53844931-53844950 Msa0647750:intron 20.0%
!! TAGACAATAGCTATATAAAA+AGG - chr4_3:53845080-53845099 None:intergenic 20.0%
!! TAGAAGTAATGATGATAAAA+TGG + chr4_3:53845445-53845464 Msa0647750:CDS 20.0%
!! ATATAAATTCTCAGATATTG+GGG - chr4_3:53845668-53845687 None:intergenic 20.0%
!! CAATATAAATTCTCAGATAT+TGG - chr4_3:53845670-53845689 None:intergenic 20.0%
!!! ATCTGAAATATTTCAATTCA+AGG + chr4_3:53845705-53845724 Msa0647750:intron 20.0%
!! TATTAACTATTGAAAAAACC+AGG - chr4_3:53846166-53846185 None:intergenic 20.0%
!!! TATTATCAGAGCTTTTAAAA+TGG + chr4_3:53846238-53846257 Msa0647750:three_prime_UTR 20.0%
!!! ATTATCAGAGCTTTTAAAAT+GGG + chr4_3:53846239-53846258 Msa0647750:three_prime_UTR 20.0%
!! TTGAAAAAGAATAACAAACT+AGG - chr4_3:53846271-53846290 None:intergenic 20.0%
!! GCAACAATTAAAATATATGT+TGG + chr4_3:53846445-53846464 Msa0647750:three_prime_UTR 20.0%
!! AATTCTAATAATCGCAGTTT+TGG - chr4_3:53843635-53843654 None:intergenic 25.0%
! AAAACTGCGATTATTAGAAT+TGG + chr4_3:53843634-53843653 Msa0647750:CDS 25.0%
! ATTATTAGAATTGGTACTAG+AGG + chr4_3:53843643-53843662 Msa0647750:CDS 25.0%
!!! TTTGACTTTTTTTATGCTTC+TGG + chr4_3:53843743-53843762 Msa0647750:intron 25.0%
!!! TTGACTTTTTTTATGCTTCT+GGG + chr4_3:53843744-53843763 Msa0647750:intron 25.0%
! TGTTATTGTCAAAAGAAAAG+GGG + chr4_3:53844000-53844019 Msa0647750:intron 25.0%
! AAGAAAATCAATCCCATATT+TGG + chr4_3:53844252-53844271 Msa0647750:intron 25.0%
! ATTATGAATGCTTTCATTGT+TGG + chr4_3:53844337-53844356 Msa0647750:intron 25.0%
! ATTTGACGTAAAAACCAATA+TGG - chr4_3:53844845-53844864 None:intergenic 25.0%
! AGCATTTAATGCATTCATAA+TGG + chr4_3:53844904-53844923 Msa0647750:intron 25.0%
! AGAAGAAAAATAACGAAAGA+AGG - chr4_3:53845118-53845137 None:intergenic 25.0%
!!! ATTTCTGTCATTTAGCTTTA+TGG + chr4_3:53845185-53845204 Msa0647750:intron 25.0%
! CAACTTATAATCATAATCTC+AGG + chr4_3:53845238-53845257 Msa0647750:intron 25.0%
! TTTATCATCATTACTTCTAC+AGG - chr4_3:53845444-53845463 None:intergenic 25.0%
! TAGGCAAGTTCATAAAATAT+AGG - chr4_3:53845481-53845500 None:intergenic 25.0%
!!! CACTTTTGGTGTTTAAATTT+TGG + chr4_3:53845520-53845539 Msa0647750:intron 25.0%
!!! CAGTTTAGTTTTACCATATT+TGG + chr4_3:53845765-53845784 Msa0647750:intron 25.0%
!!! TTAGTTTTACCATATTTGGT+CGG + chr4_3:53845769-53845788 Msa0647750:intron 25.0%
! ATCATATCTTCATAAGCATA+AGG - chr4_3:53846097-53846116 None:intergenic 25.0%
! TTATGAAGATATGATGAAGA+TGG + chr4_3:53846102-53846121 Msa0647750:CDS 25.0%
! TATGAAGATATGATGAAGAT+GGG + chr4_3:53846103-53846122 Msa0647750:CDS 25.0%
!! AGTGTTGAAACTTATAATCT+AGG - chr4_3:53846190-53846209 None:intergenic 25.0%
! TATAAGTTTCAACACTCAAT+CGG + chr4_3:53846194-53846213 Msa0647750:three_prime_UTR 25.0%
!! GTTGTATTTTATTAGGTGAT+TGG + chr4_3:53846316-53846335 Msa0647750:three_prime_UTR 25.0%
!!! TTCTAAAACTTCACTATTTC+AGG - chr4_3:53846371-53846390 None:intergenic 25.0%
ATTGCAATTGGCAATGTAAT+TGG + chr4_3:53843281-53843300 Msa0647750:five_prime_UTR 30.0%
TTGCAATTGGCAATGTAATT+GGG + chr4_3:53843282-53843301 Msa0647750:five_prime_UTR 30.0%
TGAACTATTTCACACTCAAA+TGG + chr4_3:53843444-53843463 Msa0647750:exon 30.0%
!!! AATTCACTCTTTTTTGCTTC+TGG + chr4_3:53843671-53843690 Msa0647750:intron 30.0%
!!! ATTCACTCTTTTTTGCTTCT+GGG + chr4_3:53843672-53843691 Msa0647750:intron 30.0%
! CTTCTGGGTTCTTTTTATAT+TGG + chr4_3:53843759-53843778 Msa0647750:intron 30.0%
! ATTTCATTCTTTTCTGCTTC+TGG + chr4_3:53843814-53843833 Msa0647750:intron 30.0%
! TTTCATTCTTTTCTGCTTCT+GGG + chr4_3:53843815-53843834 Msa0647750:intron 30.0%
ATGCAAATTTGAGCTAAAGT+TGG - chr4_3:53843866-53843885 None:intergenic 30.0%
!!! TGGCATTTATTTTAATGGGT+TGG + chr4_3:53843893-53843912 Msa0647750:intron 30.0%
ATGCATGTATAGAATCTCAA+CGG + chr4_3:53844111-53844130 Msa0647750:intron 30.0%
TTAAATGCTTGCAATCATCT+TGG + chr4_3:53844190-53844209 Msa0647750:intron 30.0%
! ACTGCTCTAAATGTAAACAT+AGG - chr4_3:53844374-53844393 None:intergenic 30.0%
! ATAGATGAAGCACTCATAAA+TGG + chr4_3:53844562-53844581 Msa0647750:CDS 30.0%
! TAGATGAAGCACTCATAAAT+GGG + chr4_3:53844563-53844582 Msa0647750:CDS 30.0%
!! ATAATCATTTTCTAATGGGC+TGG + chr4_3:53844866-53844885 Msa0647750:intron 30.0%
ACCATTAACAACATGGATAA+TGG + chr4_3:53844973-53844992 Msa0647750:intron 30.0%
ACCATTATCCATGTTGTTAA+TGG - chr4_3:53844977-53844996 None:intergenic 30.0%
AAGGTTAACTCTTAAAACAC+AGG - chr4_3:53845061-53845080 None:intergenic 30.0%
! AAAATAACGAAAGAAGGCAT+GGG - chr4_3:53845112-53845131 None:intergenic 30.0%
AAAAATAACGAAAGAAGGCA+TGG - chr4_3:53845113-53845132 None:intergenic 30.0%
! TTTTCAACAAGTCAGACAAT+AGG - chr4_3:53845500-53845519 None:intergenic 30.0%
!!! TGACTTGTTGAAAACACTTT+TGG + chr4_3:53845506-53845525 Msa0647750:intron 30.0%
TTGACTATATTGTGAGCTAT+TGG + chr4_3:53845554-53845573 Msa0647750:intron 30.0%
! CAATCAAAAGTTAGAAGCAT+AGG + chr4_3:53845584-53845603 Msa0647750:intron 30.0%
TCTGAGAATTTATATTGACG+AGG + chr4_3:53845673-53845692 Msa0647750:intron 30.0%
! TTTAGAATTCCTGCTTAACA+CGG + chr4_3:53846384-53846403 Msa0647750:three_prime_UTR 30.0%
CTTAACACGGAAATTTCAAT+AGG + chr4_3:53846397-53846416 Msa0647750:three_prime_UTR 30.0%
TGAAATTGCAAAAAAGGGTT+TGG + chr4_3:53846529-53846548 Msa0647750:three_prime_UTR 30.0%
ATTGGCAATGTAATTGGGTA+AGG + chr4_3:53843287-53843306 Msa0647750:five_prime_UTR 35.0%
!! ATCTCTAAGATAGAGCTTGT+GGG - chr4_3:53843318-53843337 None:intergenic 35.0%
AAGAAGAACTGAGAAGGAAA+GGG - chr4_3:53843528-53843547 None:intergenic 35.0%
TACGACATTTGGAAAAAGGT+GGG - chr4_3:53843573-53843592 None:intergenic 35.0%
ATACGACATTTGGAAAAAGG+TGG - chr4_3:53843574-53843593 None:intergenic 35.0%
CTGATACGACATTTGGAAAA+AGG - chr4_3:53843577-53843596 None:intergenic 35.0%
TTAGAATTGGTACTAGAGGA+AGG + chr4_3:53843647-53843666 Msa0647750:CDS 35.0%
! AGTTGTTTCACATGTTGACT+TGG + chr4_3:53843948-53843967 Msa0647750:intron 35.0%
! GATAGTGTGTTGTTGACATT+TGG + chr4_3:53843973-53843992 Msa0647750:intron 35.0%
GTTTGATGTTTCGTCATTCA+AGG + chr4_3:53844045-53844064 Msa0647750:intron 35.0%
! TTGCGACAGTATTTTATCAC+CGG - chr4_3:53844500-53844519 None:intergenic 35.0%
! AGATGAAGCACTCATAAATG+GGG + chr4_3:53844564-53844583 Msa0647750:CDS 35.0%
! CATGGCAAAATTGTTTTCTC+GGG - chr4_3:53844637-53844656 None:intergenic 35.0%
! GCATGGCAAAATTGTTTTCT+CGG - chr4_3:53844638-53844657 None:intergenic 35.0%
TCTTGTCACCATTAACAACA+TGG + chr4_3:53844966-53844985 Msa0647750:intron 35.0%
AAGGCTTAGAAAACTAAGTG+AGG + chr4_3:53845292-53845311 Msa0647750:CDS 35.0%
AGGCTTAGAAAACTAAGTGA+GGG + chr4_3:53845293-53845312 Msa0647750:CDS 35.0%
AGTTGTCAAAGCTACCTTAT+TGG + chr4_3:53845316-53845335 Msa0647750:CDS 35.0%
ATTCTCAGATATTGGGGAAA+GGG - chr4_3:53845662-53845681 None:intergenic 35.0%
AATTCTCAGATATTGGGGAA+AGG - chr4_3:53845663-53845682 None:intergenic 35.0%
TATTTCAATTCAAGGAGCGA+AGG + chr4_3:53845713-53845732 Msa0647750:intron 35.0%
GATGGAAATTGCTTGTTTAG+AGG + chr4_3:53845931-53845950 Msa0647750:CDS 35.0%
ATAAGCATAAGGACCAATTC+TGG - chr4_3:53846086-53846105 None:intergenic 35.0%
AGATATGATGAAGATGGGTA+AGG + chr4_3:53846108-53846127 Msa0647750:CDS 35.0%
ACAACAATTTGATCCTGATG+AGG - chr4_3:53846301-53846320 None:intergenic 35.0%
TTGAAATTTCCGTGTTAAGC+AGG - chr4_3:53846396-53846415 None:intergenic 35.0%
AACACGGAAATTTCAATAGG+TGG + chr4_3:53846400-53846419 Msa0647750:three_prime_UTR 35.0%
GAAATTTCAATAGGTGGTTC+TGG + chr4_3:53846406-53846425 Msa0647750:three_prime_UTR 35.0%
!! TTTTTCCTTTTGATTCCCTC+AGG - chr4_3:53846577-53846596 None:intergenic 35.0%
GCAATGTAATTGGGTAAGGT+AGG + chr4_3:53843291-53843310 Msa0647750:five_prime_UTR 40.0%
!! GATCTCTAAGATAGAGCTTG+TGG - chr4_3:53843319-53843338 None:intergenic 40.0%
GAATGCAGAAGAGGAAGAAA+GGG - chr4_3:53843476-53843495 None:intergenic 40.0%
AGAATGCAGAAGAGGAAGAA+AGG - chr4_3:53843477-53843496 None:intergenic 40.0%
AGAAGAACTGAGAAGGAAAG+GGG - chr4_3:53843527-53843546 None:intergenic 40.0%
CAAGAAGAACTGAGAAGGAA+AGG - chr4_3:53843529-53843548 None:intergenic 40.0%
!! ATGGGTTGGTGCTATATGTT+AGG + chr4_3:53843907-53843926 Msa0647750:intron 40.0%
!! TGTTTCACATGTTGACTTGG+TGG + chr4_3:53843951-53843970 Msa0647750:intron 40.0%
ATACAGAGTTAGCCGAAGAA+GGG + chr4_3:53844446-53844465 Msa0647750:CDS 40.0%
AATCTGAATAGCCCCTTCTT+CGG - chr4_3:53844461-53844480 None:intergenic 40.0%
! GTTTTCTCGGGCAAATAAGT+AGG - chr4_3:53844625-53844644 None:intergenic 40.0%
TGATTTCCGTCTAAGTGATG+CGG - chr4_3:53844749-53844768 None:intergenic 40.0%
TTAGAGATGGATATCTGTGG+AGG - chr4_3:53844777-53844796 None:intergenic 40.0%
CACTTAGAGATGGATATCTG+TGG - chr4_3:53844780-53844799 None:intergenic 40.0%
ATCCATCTCTAAGTGTAAGC+TGG + chr4_3:53844785-53844804 Msa0647750:intron 40.0%
GTCATTGCATGGTTCGAATA+AGG - chr4_3:53845638-53845657 None:intergenic 40.0%
TTCTCAGATATTGGGGAAAG+GGG - chr4_3:53845661-53845680 None:intergenic 40.0%
AGAAATCAGCCGACCAAATA+TGG - chr4_3:53845781-53845800 None:intergenic 40.0%
AAGAACCATCCAAAGTCGTA+AGG - chr4_3:53845873-53845892 None:intergenic 40.0%
TGCAAAGATGTTCATACCAC+GGG - chr4_3:53845980-53845999 None:intergenic 40.0%
CTGCAAAGATGTTCATACCA+CGG - chr4_3:53845981-53846000 None:intergenic 40.0%
! AGTTTCAAGCACTGCACAAA+CGG - chr4_3:53846062-53846081 None:intergenic 40.0%
GTGCTTGAAACTTCCAGAAT+TGG + chr4_3:53846070-53846089 Msa0647750:intron 40.0%
CTCAATCGGTAACACAGATA+TGG + chr4_3:53846208-53846227 Msa0647750:three_prime_UTR 40.0%
ATCGGTAACACAGATATGGT+AGG + chr4_3:53846212-53846231 Msa0647750:three_prime_UTR 40.0%
TTTCAACTGAACTCCTCATC+AGG + chr4_3:53846285-53846304 Msa0647750:three_prime_UTR 40.0%
! TCAATTTGAAGCTGATCCTG+AGG + chr4_3:53846558-53846577 Msa0647750:intron 40.0%
! CAATTTGAAGCTGATCCTGA+GGG + chr4_3:53846559-53846578 Msa0647750:intron 40.0%
AGGAAGAGAGAATGCAGAAG+AGG - chr4_3:53843485-53843504 None:intergenic 45.0%
! GAAGGATTGGAAGGTGTAGA+AGG - chr4_3:53843505-53843524 None:intergenic 45.0%
AGGGACAAGAAGAACTGAGA+AGG - chr4_3:53843534-53843553 None:intergenic 45.0%
!! GGGATTTTGAAAGACGCGAA+GGG - chr4_3:53843553-53843572 None:intergenic 45.0%
!! TGGGATTTTGAAAGACGCGA+AGG - chr4_3:53843554-53843573 None:intergenic 45.0%
! GGAAGCTCTGATACGACATT+TGG - chr4_3:53843584-53843603 None:intergenic 45.0%
! TTAGAGCAGTCCACTAGCTT+TGG + chr4_3:53844384-53844403 Msa0647750:intron 45.0%
CATACAGAGTTAGCCGAAGA+AGG + chr4_3:53844445-53844464 Msa0647750:CDS 45.0%
TACAGAGTTAGCCGAAGAAG+GGG + chr4_3:53844447-53844466 Msa0647750:CDS 45.0%
TCATTGAGTGCAGCTTCACT+AGG + chr4_3:53844694-53844713 Msa0647750:CDS 45.0%
AGCTTCACTAGGTGATCTAC+CGG + chr4_3:53844705-53844724 Msa0647750:CDS 45.0%
GTACCAATAACACTTCCAGC+CGG - chr4_3:53844727-53844746 None:intergenic 45.0%
TTGGTACCGCATCACTTAGA+CGG + chr4_3:53844740-53844759 Msa0647750:CDS 45.0%
CACCAGCTTACACTTAGAGA+TGG - chr4_3:53844790-53844809 None:intergenic 45.0%
ATATGGCAGACACTGAACAG+TGG - chr4_3:53844828-53844847 None:intergenic 45.0%
CTGTTCAGTGTCTGCCATAT+TGG + chr4_3:53844828-53844847 Msa0647750:intron 45.0%
AGAGTCATACTCGAGGATAC+TGG + chr4_3:53845029-53845048 Msa0647750:intron 45.0%
GAGTCATACTCGAGGATACT+GGG + chr4_3:53845030-53845049 Msa0647750:intron 45.0%
CAGGTGCAAGATAATTTCCG+TGG + chr4_3:53845257-53845276 Msa0647750:intron 45.0%
TCCGTGGAAATGTGCAAACA+AGG + chr4_3:53845273-53845292 Msa0647750:CDS 45.0%
!! GCCTTGTTTGCACATTTCCA+CGG - chr4_3:53845277-53845296 None:intergenic 45.0%
GGCTATTCCAATTGCACCTT+GGG - chr4_3:53845423-53845442 None:intergenic 45.0%
AGGCTATTCCAATTGCACCT+TGG - chr4_3:53845424-53845443 None:intergenic 45.0%
TCTCAGATATTGGGGAAAGG+GGG - chr4_3:53845660-53845679 None:intergenic 45.0%
AAGAGCCTTCCTTACGACTT+TGG + chr4_3:53845861-53845880 Msa0647750:CDS 45.0%
ACCATCCAAAGTCGTAAGGA+AGG - chr4_3:53845869-53845888 None:intergenic 45.0%
TATGCTAGCAGAGACAAGGA+TGG + chr4_3:53845913-53845932 Msa0647750:CDS 45.0%
! CACTGCACAAACGGAGTTTT+GGG - chr4_3:53846053-53846072 None:intergenic 45.0%
GATGAAGATGGGTAAGGATG+CGG + chr4_3:53846114-53846133 Msa0647750:CDS 45.0%
ATGAAGATGGGTAAGGATGC+GGG + chr4_3:53846115-53846134 Msa0647750:CDS 45.0%
!! CAATAGGTGGTTCTGGATTC+TGG + chr4_3:53846413-53846432 Msa0647750:three_prime_UTR 45.0%
CTGATCCTGAGGGAATCAAA+AGG + chr4_3:53846569-53846588 Msa0647750:intron 45.0%
AGGAAAGGGGAAGGATTGGA+AGG - chr4_3:53843514-53843533 None:intergenic 50.0%
GAGAAGGAAAGGGGAAGGAT+TGG - chr4_3:53843518-53843537 None:intergenic 50.0%
GAACTGAGAAGGAAAGGGGA+AGG - chr4_3:53843523-53843542 None:intergenic 50.0%
CGTCTGTTGCTCAACAGCAA+CGG - chr4_3:53843605-53843624 None:intergenic 50.0%
AACCGCTTGCAGACATAGGT+GGG + chr4_3:53844518-53844537 Msa0647750:CDS 50.0%
TTCCCACCTATGTCTGCAAG+CGG - chr4_3:53844523-53844542 None:intergenic 50.0%
CTTGCAGACATAGGTGGGAA+GGG + chr4_3:53844523-53844542 Msa0647750:CDS 50.0%
!! CTACCGGCTGGAAGTGTTAT+TGG + chr4_3:53844721-53844740 Msa0647750:CDS 50.0%
ACGCTTGAGAGTCATACTCG+AGG + chr4_3:53845022-53845041 Msa0647750:intron 50.0%
!! GCTACCTTATTGGCTCTAGC+TGG + chr4_3:53845326-53845345 Msa0647750:CDS 50.0%
CAGTCCAGCTAGAGCCAATA+AGG - chr4_3:53845333-53845352 None:intergenic 50.0%
! TTTGGTCGGCTGATTTCTGC+AGG + chr4_3:53845783-53845802 Msa0647750:intron 50.0%
CGTAAGGAAGGCTCTTTCAC+AGG - chr4_3:53845857-53845876 None:intergenic 50.0%
GCCTTCCTTACGACTTTGGA+TGG + chr4_3:53845865-53845884 Msa0647750:CDS 50.0%
CATACCCTGCAATAGGCGTT+CGG - chr4_3:53845897-53845916 None:intergenic 50.0%
CTGCTAGCATACCCTGCAAT+AGG - chr4_3:53845904-53845923 None:intergenic 50.0%
AGGGTATGCTAGCAGAGACA+AGG + chr4_3:53845909-53845928 Msa0647750:CDS 50.0%
TTCATACCACGGGTTCCATC+GGG - chr4_3:53845970-53845989 None:intergenic 50.0%
GTTCATACCACGGGTTCCAT+CGG - chr4_3:53845971-53845990 None:intergenic 50.0%
! GCACTGCACAAACGGAGTTT+TGG - chr4_3:53846054-53846073 None:intergenic 50.0%
!! CAGTCCACTAGCTTTGGCTC+AGG + chr4_3:53844390-53844409 Msa0647750:intron 55.0%
TGTGCCTGAGCCAAAGCTAG+TGG - chr4_3:53844397-53844416 None:intergenic 55.0%
TCGCAACCGCTTGCAGACAT+AGG + chr4_3:53844514-53844533 Msa0647750:CDS 55.0%
CAACCGCTTGCAGACATAGG+TGG + chr4_3:53844517-53844536 Msa0647750:CDS 55.0%
GCTTGCAGACATAGGTGGGA+AGG + chr4_3:53844522-53844541 Msa0647750:CDS 55.0%
TCCTCTCGTGGAAGGTTGCA+TGG - chr4_3:53844655-53844674 None:intergenic 55.0%
CTCTGACATCCTCTCGTGGA+AGG - chr4_3:53844663-53844682 None:intergenic 55.0%
GCATCTCTGACATCCTCTCG+TGG - chr4_3:53844667-53844686 None:intergenic 55.0%
TCACTAGGTGATCTACCGGC+TGG + chr4_3:53844709-53844728 Msa0647750:CDS 55.0%
ATGCTTCCAGCTGTTGCCCA+AGG + chr4_3:53845404-53845423 Msa0647750:CDS 55.0%
ATTGCACCTTGGGCAACAGC+TGG - chr4_3:53845413-53845432 None:intergenic 55.0%
GCTGTTGCCCAAGGTGCAAT+TGG + chr4_3:53845413-53845432 Msa0647750:CDS 55.0%
TCTTGCCGAACGCCTATTGC+AGG + chr4_3:53845889-53845908 Msa0647750:CDS 55.0%
CTTGCCGAACGCCTATTGCA+GGG + chr4_3:53845890-53845909 Msa0647750:CDS 55.0%
!! GGATTAGTTGCTTCCCCCGA+TGG + chr4_3:53845952-53845971 Msa0647750:CDS 55.0%
TCATACCACGGGTTCCATCG+GGG - chr4_3:53845969-53845988 None:intergenic 55.0%
GAGGAGCTTCTTTCTCGAGC+TGG + chr4_3:53846139-53846158 Msa0647750:CDS 55.0%
CTTCTTTCTCGAGCTGGACC+TGG + chr4_3:53846145-53846164 Msa0647750:CDS 55.0%
GCCATGCAACCTTCCACGAG+AGG + chr4_3:53844651-53844670 Msa0647750:CDS 60.0%
GGGGAAAGGGGGTCATTGCA+TGG - chr4_3:53845649-53845668 None:intergenic 60.0%
CATACCACGGGTTCCATCGG+GGG - chr4_3:53845968-53845987 None:intergenic 60.0%
GATGGGTAAGGATGCGGGTG+AGG + chr4_3:53846120-53846139 Msa0647750:CDS 60.0%
GCTTCCCCCGATGGAACCCG+TGG + chr4_3:53845961-53845980 Msa0647750:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 53843281 53846621 53843281 ID=Msa0647750;Name=Msa0647750
chr4_3 mRNA 53843281 53846621 53843281 ID=Msa0647750-mRNA-1;Parent=Msa0647750;Name=Msa0647750-mRNA-1;_AED=0.36;_eAED=0.36;_QI=182|1|1|1|0.8|0.66|6|395|369
chr4_3 exon 53843281 53843668 53843281 ID=Msa0647750-mRNA-1:exon:13517;Parent=Msa0647750-mRNA-1
chr4_3 exon 53844393 53844798 53844393 ID=Msa0647750-mRNA-1:exon:13518;Parent=Msa0647750-mRNA-1
chr4_3 exon 53845260 53845466 53845260 ID=Msa0647750-mRNA-1:exon:13519;Parent=Msa0647750-mRNA-1
chr4_3 exon 53845805 53845982 53845805 ID=Msa0647750-mRNA-1:exon:13520;Parent=Msa0647750-mRNA-1
chr4_3 exon 53846071 53846568 53846071 ID=Msa0647750-mRNA-1:exon:13521;Parent=Msa0647750-mRNA-1
chr4_3 exon 53846612 53846621 53846612 ID=Msa0647750-mRNA-1:exon:13522;Parent=Msa0647750-mRNA-1
chr4_3 five_prime_UTR 53843281 53843462 53843281 ID=Msa0647750-mRNA-1:five_prime_utr;Parent=Msa0647750-mRNA-1
chr4_3 CDS 53843463 53843668 53843463 ID=Msa0647750-mRNA-1:cds;Parent=Msa0647750-mRNA-1
chr4_3 CDS 53844393 53844798 53844393 ID=Msa0647750-mRNA-1:cds;Parent=Msa0647750-mRNA-1
chr4_3 CDS 53845260 53845466 53845260 ID=Msa0647750-mRNA-1:cds;Parent=Msa0647750-mRNA-1
chr4_3 CDS 53845805 53845982 53845805 ID=Msa0647750-mRNA-1:cds;Parent=Msa0647750-mRNA-1
chr4_3 CDS 53846071 53846183 53846071 ID=Msa0647750-mRNA-1:cds;Parent=Msa0647750-mRNA-1
chr4_3 three_prime_UTR 53846184 53846568 53846184 ID=Msa0647750-mRNA-1:three_prime_utr;Parent=Msa0647750-mRNA-1
chr4_3 three_prime_UTR 53846612 53846621 53846612 ID=Msa0647750-mRNA-1:three_prime_utr;Parent=Msa0647750-mRNA-1
Gene Sequence

>Msa0647750

ATGGAGATGACCCTTTCTTCCTCTTCTGCATTCTCTCTTCCTTCTACACCTTCCAATCCTTCCCCTTTCCTTCTCAGTTCTTCTTGTCCCTTCGCGTCTTTCAAAATCCCACCTTTTTCCAAATGTCGTATCAGAGCTTCCGTTGCTGTTGAGCAACAGACGCAACAAACCAAAACTGCGATTATTAGAATTGGTACTAGAGGAAGTCCACTAGCTTTGGCTCAGGCACACGAGACTAGAGACAAACTCATAGCATCGCATACAGAGTTAGCCGAAGAAGGGGCTATTCAGATTGTAATAATAAAAACAACCGGTGATAAAATACTGTCGCAACCGCTTGCAGACATAGGTGGGAAGGGCTTGTTTACTAAAGAAATAGATGAAGCACTCATAAATGGGGACATTGACATTGCAGTTCACTCAATGAAAGATGTTCCTACTTATTTGCCCGAGAAAACAATTTTGCCATGCAACCTTCCACGAGAGGATGTCAGAGATGCGTTTATATCATTGAGTGCAGCTTCACTAGGTGATCTACCGGCTGGAAGTGTTATTGGTACCGCATCACTTAGACGGAAATCACAAATCCTCCACAGATATCCATCTCTAAGTGTGCAAGATAATTTCCGTGGAAATGTGCAAACAAGGCTTAGAAAACTAAGTGAGGGAGTTGTCAAAGCTACCTTATTGGCTCTAGCTGGACTGAAACGATTAAATATGACAGAAAATGTTACTTCGACACTTTCAATTGATGATATGCTTCCAGCTGTTGCCCAAGGTGCAATTGGAATAGCCTGTAGAAGTAATGATGATAAAATGGCAGAATATCTTGCTTTGCTGAATCATGAAGAAACAAGATTAGCAATTTCCTGTGAAAGAGCCTTCCTTACGACTTTGGATGGTTCTTGCCGAACGCCTATTGCAGGGTATGCTAGCAGAGACAAGGATGGAAATTGCTTGTTTAGAGGATTAGTTGCTTCCCCCGATGGAACCCGTGTGCTTGAAACTTCCAGAATTGGTCCTTATGCTTATGAAGATATGATGAAGATGGGTAAGGATGCGGGTGAGGAGCTTCTTTCTCGAGCTGGACCTGGTTTTTTCAATAGTTAA

Protein sequence

>Msa0647750

MEMTLSSSSAFSLPSTPSNPSPFLLSSSCPFASFKIPPFSKCRIRASVAVEQQTQQTKTAIIRIGTRGSPLALAQAHETRDKLIASHTELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLSAASLGDLPAGSVIGTASLRRKSQILHRYPSLSVQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTSTLSIDDMLPAVAQGAIGIACRSNDDKMAEYLALLNHEETRLAISCERAFLTTLDGSCRTPIAGYASRDKDGNCLFRGLVASPDGTRVLETSRIGPYAYEDMMKMGKDAGEELLSRAGPGFFNS*