AlfalfaGEDB | Msa0686240

M. sativa cultivar zhongmu-4 / Msa0686240

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686240	XP_003606932.1	90.000	360	18	5	1	358	1	344	0.0	644

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686240	sp\|Q8GY61\|BH063_ARATH	43.689	309	118	10	12	272	5	305	6.80e-59	196

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686240	G7JHB9	90.000	360	18	5	1	358	1	344	0.0	644

TFs/TRs:

Gene ID	Type	Classification
Msa0686240	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa0686240	0.802765	4.802685e-49	-8.615850e-47
Msa0006870	Msa0686240	0.830798	2.397715e-55	-8.615850e-47
Msa0012460	Msa0686240	0.817986	2.480738e-52	-8.615850e-47
Msa0017120	Msa0686240	0.817170	3.787870e-52	-8.615850e-47
Msa0017940	Msa0686240	0.806468	8.106874e-50	-8.615850e-47
Msa0034320	Msa0686240	0.811345	7.335747e-51	-8.615850e-47
Msa0043680	Msa0686240	0.840192	1.008510e-57	-8.615850e-47
Msa0049990	Msa0686240	0.810477	1.130464e-50	-8.615850e-47
Msa0065390	Msa0686240	0.833633	4.766930e-56	-8.615850e-47
Msa0073390	Msa0686240	0.823991	1.027775e-53	-8.615850e-47
Msa0077910	Msa0686240	0.828576	8.326179e-55	-8.615850e-47
Msa0081300	Msa0686240	0.800492	1.405007e-48	-8.615850e-47
Msa0082820	Msa0686240	0.807921	3.990603e-50	-8.615850e-47
Msa0089210	Msa0686240	0.800146	1.652945e-48	-8.615850e-47
Msa0092180	Msa0686240	0.811209	7.848766e-51	-8.615850e-47
Msa0092660	Msa0686240	0.839272	1.750194e-57	-8.615850e-47
Msa0092680	Msa0686240	0.815594	8.532125e-52	-8.615850e-47
Msa0092730	Msa0686240	0.840308	9.402562e-58	-8.615850e-47
Msa0100570	Msa0686240	0.828555	8.422676e-55	-8.615850e-47
Msa0100860	Msa0686240	0.828634	8.060601e-55	-8.615850e-47
Msa0103780	Msa0686240	0.802127	6.500832e-49	-8.615850e-47
Msa0110710	Msa0686240	0.832905	7.237808e-56	-8.615850e-47
Msa0112290	Msa0686240	0.801202	1.006177e-48	-8.615850e-47
Msa0605670	Msa0686240	0.832437	9.458723e-56	-8.615850e-47
Msa0607480	Msa0686240	0.811209	7.848766e-51	-8.615850e-47
Msa0633750	Msa0686240	0.806017	1.008979e-49	-8.615850e-47
Msa0640880	Msa0686240	0.809507	1.829119e-50	-8.615850e-47
Msa0642650	Msa0686240	0.810902	9.150276e-51	-8.615850e-47
Msa0643800	Msa0686240	0.820908	5.349995e-53	-8.615850e-47
Msa0646710	Msa0686240	0.861063	1.334819e-63	-8.615850e-47
Msa0647110	Msa0686240	0.829480	5.027537e-55	-8.615850e-47
Msa0647460	Msa0686240	0.811058	8.465298e-51	-8.615850e-47
Msa0647750	Msa0686240	0.808944	2.414335e-50	-8.615850e-47
Msa0659920	Msa0686240	0.842868	1.987724e-58	-8.615850e-47
Msa0681890	Msa0686240	0.826380	2.800323e-54	-8.615850e-47
Msa0683650	Msa0686240	0.813652	2.296565e-51	-8.615850e-47
Msa0686240	Msa0690500	0.852537	4.326834e-61	-8.615850e-47
Msa0686240	Msa0703720	0.818368	2.032999e-52	-8.615850e-47
Msa0686240	Msa0703760	0.847313	1.251708e-59	-8.615850e-47
Msa0686240	Msa0706580	0.847453	1.145182e-59	-8.615850e-47
Msa0686240	Msa0709480	0.805037	1.619365e-49	-8.615850e-47
Msa0686240	Msa0717090	0.818471	1.926986e-52	-8.615850e-47
Msa0686240	Msa0730180	0.800055	1.724258e-48	-8.615850e-47
Msa0686240	Msa0733110	0.813117	3.011388e-51	-8.615850e-47
Msa0686240	Msa0761790	0.807306	5.390258e-50	-8.615850e-47
Msa0686240	Msa0770430	0.801051	1.080608e-48	-8.615850e-47
Msa0686240	Msa0790180	0.805699	1.176885e-49	-8.615850e-47
Msa0686240	Msa0804110	0.839153	1.878177e-57	-8.615850e-47
Msa0686240	Msa0810370	0.829186	5.926410e-55	-8.615850e-47
Msa0686240	Msa0823300	0.815622	8.411566e-52	-8.615850e-47
Msa0686240	Msa0842220	0.807678	4.495334e-50	-8.615850e-47
Msa0686240	Msa0863440	0.838743	2.399448e-57	-8.615850e-47
Msa0686240	Msa0900320	0.806672	7.342078e-50	-8.615850e-47
Msa0686240	Msa0925160	0.800842	1.192342e-48	-8.615850e-47
Msa0686240	Msa0955260	0.813331	2.702405e-51	-8.615850e-47
Msa0686240	Msa0972730	0.819451	1.153299e-52	-8.615850e-47
Msa0686240	Msa0990520	0.808528	2.963348e-50	-8.615850e-47
Msa0686240	Msa0992590	0.804818	1.799739e-49	-8.615850e-47
Msa0686240	Msa1002980	0.813279	2.774148e-51	-8.615850e-47
Msa0686240	Msa1022310	0.806311	8.749233e-50	-8.615850e-47
Msa0686240	Msa1022390	0.802148	6.437266e-49	-8.615850e-47
Msa0686240	Msa1027790	0.823490	1.346605e-53	-8.615850e-47
Msa0686240	Msa1028460	0.809362	1.964236e-50	-8.615850e-47
Msa0686240	Msa1032140	0.804418	2.180517e-49	-8.615850e-47
Msa0686240	Msa1033120	0.820894	5.389532e-53	-8.615850e-47
Msa0686240	Msa1040770	0.808296	3.320288e-50	-8.615850e-47
Msa0686240	Msa1045440	0.823474	1.358418e-53	-8.615850e-47
Msa0686240	Msa1061180	0.808501	3.003149e-50	-8.615850e-47
Msa0686240	Msa1067430	0.838791	2.330758e-57	-8.615850e-47
Msa0686240	Msa1072080	0.830770	2.435678e-55	-8.615850e-47
Msa0686240	Msa1075120	0.803217	3.873962e-49	-8.615850e-47
Msa0686240	Msa1084150	0.817275	3.587788e-52	-8.615850e-47
Msa0686240	Msa1105290	0.801744	7.792109e-49	-8.615850e-47
Msa0686240	Msa1106560	0.803792	2.943509e-49	-8.615850e-47
Msa0686240	Msa1106580	0.828729	7.646752e-55	-8.615850e-47
Msa0686240	Msa1112610	0.822536	2.247668e-53	-8.615850e-47
Msa0686240	Msa1126310	0.805950	1.042318e-49	-8.615850e-47
Msa0686240	Msa1127510	0.809441	1.889745e-50	-8.615850e-47
Msa0686240	Msa1128350	0.809781	1.596848e-50	-8.615850e-47
Msa0686240	Msa1148780	0.806411	8.334989e-50	-8.615850e-47
Msa0686240	Msa1159100	0.800530	1.380306e-48	-8.615850e-47
Msa0686240	Msa1166180	0.817978	2.490960e-52	-8.615850e-47
Msa0686240	Msa1166280	0.814489	1.501288e-51	-8.615850e-47
Msa0686240	Msa1167160	0.804518	2.078357e-49	-8.615850e-47
Msa0686240	Msa1183390	0.800472	1.418244e-48	-8.615850e-47
Msa0686240	Msa1183610	0.806416	8.313324e-50	-8.615850e-47
Msa0686240	Msa1183760	0.818949	1.500683e-52	-8.615850e-47
Msa0686240	Msa1207280	0.807446	5.035470e-50	-8.615850e-47
Msa0686240	Msa1219250	0.809209	2.118524e-50	-8.615850e-47
Msa0686240	Msa1228950	0.810928	9.032906e-51	-8.615850e-47
Msa0686240	Msa1229050	0.805120	1.555806e-49	-8.615850e-47
Msa0686240	Msa1232010	0.800040	1.736803e-48	-8.615850e-47
Msa0686240	Msa1235890	0.802012	6.864298e-49	-8.615850e-47
Msa0686240	Msa1271490	0.808616	2.837214e-50	-8.615850e-47
Msa0686240	Msa1271510	0.814103	1.827031e-51	-8.615850e-47
Msa0686240	Msa1271600	0.813865	2.061811e-51	-8.615850e-47
Msa0686240	Msa1274740	0.828478	8.794114e-55	-8.615850e-47
Msa0686240	Msa1279700	0.825656	4.161676e-54	-8.615850e-47
Msa0686240	Msa1293530	0.816970	4.201669e-52	-8.615850e-47
Msa0686240	Msa1307370	0.800489	1.407017e-48	-8.615850e-47
Msa0686240	Msa1312730	0.823812	1.132198e-53	-8.615850e-47
Msa0686240	Msa1315980	0.808730	2.683102e-50	-8.615850e-47
Msa0686240	Msa1324940	0.802346	5.859857e-49	-8.615850e-47
Msa0686240	Msa1325980	0.800324	1.520687e-48	-8.615850e-47
Msa0686240	Msa1336320	0.807263	5.506668e-50	-8.615850e-47
Msa0686240	Msa1339250	0.811834	5.740520e-51	-8.615850e-47
Msa0686240	Msa1361840	0.822372	2.454233e-53	-8.615850e-47
Msa0686240	Msa1367600	0.803307	3.710865e-49	-8.615850e-47
Msa0686240	Msa1367810	0.828946	6.776165e-55	-8.615850e-47
Msa0686240	Msa1375630	0.809988	1.440956e-50	-8.615850e-47
Msa0686240	Msa1376530	0.813847	2.080862e-51	-8.615850e-47
Msa0686240	Msa1376640	0.804306	2.300875e-49	-8.615850e-47
Msa0686240	Msa1398840	0.837567	4.815922e-57	-8.615850e-47
Msa0686240	Msa1404370	0.800057	1.722629e-48	-8.615850e-47
Msa0686240	Msa1405770	0.819292	1.254156e-52	-8.615850e-47
Msa0686240	Msa1407710	0.831222	1.886347e-55	-8.615850e-47
Msa0686240	Msa1410170	0.820199	7.780796e-53	-8.615850e-47
Msa0686240	Msa1415250	0.833548	5.005421e-56	-8.615850e-47
Msa0686240	Msa1416460	0.817881	2.620006e-52	-8.615850e-47
Msa0686240	Msa1418600	0.812317	4.505758e-51	-8.615850e-47
Msa0686240	Msa1424240	0.824512	7.754948e-54	-8.615850e-47
Msa0686240	Msa1437320	0.806906	6.552952e-50	-8.615850e-47
Msa0686240	Msa1442300	0.809134	2.198792e-50	-8.615850e-47
Msa0686240	Msa1449680	0.811041	8.536681e-51	-8.615850e-47
Msa0686240	Msa1460650	0.807546	4.794028e-50	-8.615850e-47
Msa0121650	Msa0686240	0.811026	8.599719e-51	-8.615850e-47
Msa0122210	Msa0686240	0.803530	3.336056e-49	-8.615850e-47
Msa0125800	Msa0686240	0.832711	8.087006e-56	-8.615850e-47
Msa0135980	Msa0686240	0.824505	7.783265e-54	-8.615850e-47
Msa0137030	Msa0686240	0.824311	8.647116e-54	-8.615850e-47
Msa0137600	Msa0686240	0.835927	1.261494e-56	-8.615850e-47
Msa0144340	Msa0686240	0.819659	1.033813e-52	-8.615850e-47
Msa0150210	Msa0686240	0.812508	4.092449e-51	-8.615850e-47
Msa0152380	Msa0686240	0.822990	1.762300e-53	-8.615850e-47
Msa0155550	Msa0686240	0.818801	1.621160e-52	-8.615850e-47
Msa0157020	Msa0686240	0.821052	4.955905e-53	-8.615850e-47
Msa0170440	Msa0686240	0.830793	2.403855e-55	-8.615850e-47
Msa0173610	Msa0686240	0.814897	1.219373e-51	-8.615850e-47
Msa0177280	Msa0686240	0.810796	9.644314e-51	-8.615850e-47
Msa0182270	Msa0686240	0.829312	5.524693e-55	-8.615850e-47
Msa0185550	Msa0686240	0.810066	1.386500e-50	-8.615850e-47
Msa0223280	Msa0686240	0.816042	6.779093e-52	-8.615850e-47
Msa0225010	Msa0686240	0.815196	1.046537e-51	-8.615850e-47
Msa0379390	Msa0686240	0.819489	1.130928e-52	-8.615850e-47
Msa0379450	Msa0686240	0.812113	4.991865e-51	-8.615850e-47
Msa0380420	Msa0686240	0.814767	1.302675e-51	-8.615850e-47
Msa0399180	Msa0686240	0.813144	2.970350e-51	-8.615850e-47
Msa0417630	Msa0686240	0.845581	3.713375e-59	-8.615850e-47
Msa0476150	Msa0686240	0.806172	9.361230e-50	-8.615850e-47
Msa0247310	Msa0686240	0.825556	4.396498e-54	-8.615850e-47
Msa0257130	Msa0686240	0.813889	2.036133e-51	-8.615850e-47
Msa0259980	Msa0686240	0.812378	4.370272e-51	-8.615850e-47
Msa0269830	Msa0686240	0.804264	2.348231e-49	-8.615850e-47
Msa0280140	Msa0686240	0.825915	3.613322e-54	-8.615850e-47
Msa0308430	Msa0686240	0.816367	5.734825e-52	-8.615850e-47
Msa0334780	Msa0686240	0.819350	1.216011e-52	-8.615850e-47
Msa0339860	Msa0686240	0.806140	9.504526e-50	-8.615850e-47
Msa0342620	Msa0686240	0.819541	1.099982e-52	-8.615850e-47
Msa0362840	Msa0686240	0.809469	1.863253e-50	-8.615850e-47
Msa0504740	Msa0686240	0.801767	7.709918e-49	-8.615850e-47
Msa0526130	Msa0686240	0.813309	2.732693e-51	-8.615850e-47
Msa0532840	Msa0686240	0.818004	2.457391e-52	-8.615850e-47
Msa0533010	Msa0686240	0.818141	2.288039e-52	-8.615850e-47
Msa0550280	Msa0686240	0.823759	1.164981e-53	-8.615850e-47
Msa0550720	Msa0686240	0.806398	8.387694e-50	-8.615850e-47
Msa0555940	Msa0686240	0.800716	1.264796e-48	-8.615850e-47
Msa0567290	Msa0686240	0.846666	1.881914e-59	-8.615850e-47
Msa0581460	Msa0686240	0.805904	1.065902e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686240	MtrunA17_Chr4g0035101	90.000	360	18	5	1	358	1	344	0.0	644
Msa0686240	MtrunA17_Chr3g0144641	53.253	415	120	16	1	358	1	398	1.67e-122	358
Msa0686240	MtrunA17_Chr7g0234761	46.091	243	111	6	69	293	220	460	4.73e-53	183
Msa0686240	MtrunA17_Chr5g0421111	49.537	216	84	8	152	358	359	558	1.03e-50	177
Msa0686240	MtrunA17_Chr8g0365941	51.323	189	76	5	57	245	220	392	1.50e-47	167
Msa0686240	MtrunA17_Chr8g0339091	60.000	145	52	3	106	248	242	382	6.26e-46	163
Msa0686240	MtrunA17_Chr1g0152131	37.676	284	133	6	50	333	169	408	5.41e-45	159
Msa0686240	MtrunA17_Chr5g0415291	59.701	134	42	2	114	247	79	200	2.66e-43	150
Msa0686240	MtrunA17_Chr8g0363921	75.258	97	24	0	155	251	148	244	2.83e-43	151
Msa0686240	MtrunA17_Chr7g0258161	74.194	93	24	0	151	243	166	258	1.67e-42	150
Msa0686240	MtrunA17_Chr1g0174161	62.393	117	37	2	137	250	143	255	1.12e-41	148
Msa0686240	MtrunA17_Chr8g0385911	82.143	84	14	1	155	237	142	225	1.03e-39	143
Msa0686240	MtrunA17_Chr3g0131771	75.000	92	20	1	155	243	144	235	1.44e-39	142
Msa0686240	MtrunA17_Chr6g0484271	63.636	99	35	1	138	235	134	232	7.05e-34	126
Msa0686240	MtrunA17_Chr4g0074161	71.212	66	18	1	158	223	206	270	1.09e-21	95.5
Msa0686240	MtrunA17_Chr1g0190731	68.182	66	20	1	158	223	193	257	1.30e-20	91.7
Msa0686240	MtrunA17_Chr4g0032951	56.923	65	28	0	158	222	355	419	3.50e-15	76.3
Msa0686240	MtrunA17_Chr1g0182791	52.174	69	32	1	160	228	319	386	7.75e-15	75.5
Msa0686240	MtrunA17_Chr4g0014771	53.846	65	30	0	158	222	118	182	1.12e-14	72.0
Msa0686240	MtrunA17_Chr2g0329041	52.308	65	31	0	156	220	330	394	2.08e-14	73.9
Msa0686240	MtrunA17_Chr1g0193321	45.205	73	39	1	160	232	464	535	2.31e-14	74.3
Msa0686240	MtrunA17_Chr1g0174271	50.725	69	34	0	158	226	298	366	6.25e-14	72.4
Msa0686240	MtrunA17_Chr1g0152651	45.455	88	43	2	135	222	255	337	7.32e-14	72.0
Msa0686240	MtrunA17_Chr1g0184841	63.636	66	23	1	158	223	120	184	7.47e-14	71.2
Msa0686240	MtrunA17_Chr7g0258181	47.297	74	39	0	158	231	243	316	1.18e-13	70.9
Msa0686240	MtrunA17_Chr1g0153241	42.045	88	49	2	138	224	64	150	1.40e-13	70.1
Msa0686240	MtrunA17_Chr3g0087771	32.941	170	100	3	56	222	228	386	1.25e-12	68.6
Msa0686240	MtrunA17_Chr8g0351881	47.692	65	34	0	158	222	316	380	4.28e-12	67.0
Msa0686240	MtrunA17_Chr7g0262691	37.097	124	57	5	108	223	206	316	1.06e-11	65.9
Msa0686240	MtrunA17_Chr7g0271251	40.196	102	58	2	124	223	396	496	1.43e-11	65.9
Msa0686240	MtrunA17_Chr3g0095391	36.893	103	60	3	160	259	311	411	2.04e-11	65.1
Msa0686240	MtrunA17_Chr3g0134741	51.562	64	30	1	159	222	230	292	3.40e-11	63.5
Msa0686240	MtrunA17_Chr5g0393721	50.000	64	31	1	159	222	225	287	3.77e-11	63.5
Msa0686240	MtrunA17_Chr7g0270871	45.161	62	33	1	169	230	213	273	5.01e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686240	AT4G34530.1	43.689	309	118	10	12	272	5	305	6.92e-60	196
Msa0686240	AT2G18300.1	59.006	161	56	5	89	248	124	275	3.26e-52	176
Msa0686240	AT2G18300.2	60.256	156	52	5	89	243	124	270	3.19e-51	174
Msa0686240	AT1G68920.3	41.696	283	118	6	88	357	236	484	3.67e-51	177
Msa0686240	AT1G68920.1	40.753	292	126	6	79	357	228	485	4.71e-51	177
Msa0686240	AT1G68920.4	40.753	292	126	6	79	357	228	485	4.71e-51	177
Msa0686240	AT1G68920.2	40.753	292	126	6	79	357	228	485	4.71e-51	177
Msa0686240	AT2G18300.3	60.256	156	52	5	89	243	124	270	8.32e-51	173
Msa0686240	AT3G07340.1	72.174	115	32	0	139	253	239	353	4.92e-50	174
Msa0686240	AT3G07340.2	76.636	107	25	0	139	245	239	345	5.12e-50	173
Msa0686240	AT3G23690.1	61.333	150	55	2	106	254	140	287	2.72e-49	170
Msa0686240	AT1G26260.3	52.151	186	68	3	101	276	126	300	3.21e-49	169
Msa0686240	AT1G26260.5	49.268	205	83	3	82	276	136	329	7.44e-49	169
Msa0686240	AT1G26260.4	49.268	205	83	3	82	276	158	351	1.86e-48	168
Msa0686240	AT1G26260.1	49.268	205	83	3	82	276	158	351	1.86e-48	168
Msa0686240	AT1G26260.6	49.268	205	83	3	82	276	158	351	1.86e-48	168
Msa0686240	AT1G26260.2	49.268	205	83	3	82	276	158	351	1.86e-48	168
Msa0686240	AT5G48560.2	50.521	192	89	3	60	245	198	389	3.97e-48	169
Msa0686240	AT5G48560.1	50.521	192	89	3	60	245	198	389	8.95e-48	169
Msa0686240	AT4G36540.2	52.663	169	59	4	89	257	93	240	1.51e-46	160
Msa0686240	AT1G10120.2	46.759	216	78	5	123	338	174	352	1.63e-46	162
Msa0686240	AT1G10120.1	46.759	216	78	5	123	338	174	352	1.63e-46	162
Msa0686240	AT4G36540.1	55.484	155	48	4	89	243	93	226	1.09e-45	158
Msa0686240	AT1G59640.1	63.636	132	41	2	124	249	97	227	4.27e-45	155
Msa0686240	AT2G42300.4	71.134	97	28	0	148	244	175	271	4.05e-44	153
Msa0686240	AT5G50915.3	55.414	157	52	6	109	259	85	229	1.13e-43	152
Msa0686240	AT5G50915.4	55.414	157	52	6	109	259	85	229	1.13e-43	152
Msa0686240	AT1G59640.2	65.354	127	37	2	124	244	97	222	1.44e-43	154
Msa0686240	AT3G57800.2	74.737	95	24	0	149	243	195	289	1.50e-43	155
Msa0686240	AT5G50915.1	55.414	157	52	6	109	259	85	229	5.27e-43	151
Msa0686240	AT5G50915.2	55.414	157	52	6	109	259	85	229	5.27e-43	151
Msa0686240	AT2G42300.1	70.833	96	28	0	148	243	175	270	1.31e-42	151
Msa0686240	AT5G62610.2	82.895	76	13	0	154	229	149	224	1.47e-37	136
Msa0686240	AT5G62610.1	82.895	76	13	0	154	229	149	224	1.47e-37	136
Msa0686240	AT1G73830.2	52.113	142	57	4	101	235	87	224	2.15e-35	130
Msa0686240	AT1G73830.1	52.113	142	57	4	101	235	87	224	2.54e-35	130
Msa0686240	AT1G18400.2	76.250	80	19	0	156	235	143	222	2.57e-35	129
Msa0686240	AT1G18400.1	76.250	80	19	0	156	235	143	222	4.90e-35	129
Msa0686240	AT3G57800.1	50.000	142	24	1	149	243	195	336	1.46e-34	132
Msa0686240	AT1G25330.1	63.366	101	36	1	145	245	92	191	3.46e-34	126
Msa0686240	AT5G58010.1	63.750	80	24	2	158	233	99	177	1.48e-22	96.7
Msa0686240	AT2G24260.2	56.471	85	36	1	139	223	16	99	2.89e-22	94.7
Msa0686240	AT4G30980.1	71.212	66	18	1	158	223	130	194	7.01e-22	95.1
Msa0686240	AT4G30980.2	71.212	66	18	1	158	223	178	242	1.04e-21	95.1
Msa0686240	AT2G24260.1	56.471	85	36	1	139	223	119	202	1.43e-21	94.7
Msa0686240	AT2G42300.5	70.000	50	15	0	148	197	175	224	1.53e-18	84.0
Msa0686240	AT2G42300.3	70.000	50	15	0	148	197	175	224	1.53e-18	84.0
Msa0686240	AT2G42300.2	70.000	50	15	0	148	197	175	224	1.87e-18	84.0
Msa0686240	AT2G20180.7	53.968	63	28	1	161	223	210	271	2.07e-14	74.3
Msa0686240	AT2G20180.1	53.968	63	28	1	161	223	210	271	2.07e-14	74.3
Msa0686240	AT2G20180.5	53.968	63	28	1	161	223	210	271	2.07e-14	74.3
Msa0686240	AT2G20180.4	53.125	64	29	1	160	223	280	342	2.15e-14	74.7
Msa0686240	AT2G20180.6	53.125	64	29	1	160	223	280	342	2.15e-14	74.7
Msa0686240	AT2G20180.2	53.125	64	29	1	160	223	280	342	2.15e-14	74.7
Msa0686240	AT2G20180.3	53.125	64	29	1	160	223	280	342	2.15e-14	74.7
Msa0686240	AT1G51140.1	50.000	78	37	1	146	221	290	367	4.63e-14	73.2
Msa0686240	AT4G09180.1	50.746	67	33	0	156	222	182	248	5.53e-14	71.6
Msa0686240	AT1G09530.3	50.000	64	31	1	160	223	339	401	6.84e-14	73.2
Msa0686240	AT1G09530.2	50.000	64	31	1	160	223	339	401	6.84e-14	73.2
Msa0686240	AT1G09530.5	50.000	64	31	1	160	223	339	401	6.84e-14	73.2
Msa0686240	AT1G09530.1	50.000	64	31	1	160	223	339	401	6.84e-14	73.2
Msa0686240	AT1G09530.4	50.000	64	31	1	160	223	339	401	6.84e-14	73.2
Msa0686240	AT1G09530.6	50.000	64	31	1	160	223	339	401	6.84e-14	73.2
Msa0686240	AT2G42280.1	47.297	74	39	0	148	221	269	342	6.90e-14	72.4
Msa0686240	AT2G42280.3	36.885	122	71	2	102	221	227	344	1.18e-13	71.6
Msa0686240	AT4G28790.1	37.736	106	57	3	160	264	273	370	1.55e-13	71.6
Msa0686240	AT1G35460.1	50.769	65	32	0	158	222	181	245	2.69e-13	69.7
Msa0686240	AT1G03040.2	62.121	66	24	1	158	223	139	203	2.70e-13	70.1
Msa0686240	AT4G02590.3	62.121	66	24	1	158	223	83	147	2.79e-13	69.3
Msa0686240	AT1G03040.1	62.121	66	24	1	158	223	144	208	2.93e-13	70.1
Msa0686240	AT4G28815.2	55.172	58	25	1	161	218	71	127	3.30e-13	68.9
Msa0686240	AT2G20180.8	52.459	61	28	1	160	220	280	339	3.78e-13	70.1
Msa0686240	AT4G02590.2	62.121	66	24	1	158	223	146	210	4.35e-13	69.7
Msa0686240	AT4G02590.1	62.121	66	24	1	158	223	146	210	4.35e-13	69.7
Msa0686240	AT1G03040.3	62.121	66	24	1	158	223	144	208	5.07e-13	69.7
Msa0686240	AT4G28800.1	38.384	99	52	2	161	259	252	341	7.07e-13	69.7
Msa0686240	AT1G27740.1	38.938	113	68	1	110	222	119	230	9.12e-13	68.2
Msa0686240	AT4G28815.1	55.172	58	25	1	161	218	147	203	1.00e-12	68.6
Msa0686240	AT4G33880.1	44.086	93	48	3	133	222	238	329	1.16e-11	65.9
Msa0686240	AT2G46970.3	41.250	80	41	2	156	230	194	272	1.23e-11	65.9
Msa0686240	AT2G46970.1	41.250	80	41	2	156	230	216	294	1.30e-11	65.9
Msa0686240	AT2G46970.2	41.250	80	41	2	156	230	185	263	1.30e-11	65.9
Msa0686240	AT4G28800.2	52.542	59	27	1	161	219	264	321	1.48e-11	65.9
Msa0686240	AT2G14760.1	39.655	116	56	4	117	222	189	300	1.72e-11	65.1
Msa0686240	AT4G00050.2	49.231	65	32	1	158	222	105	168	5.93e-11	63.2

Find 89 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTTGTTTGCTCCGTGATTT+TGG	0.122527	4_4:-50640385	None:intergenic
TTAAAGTACATAACATATTT+TGG	0.158845	4_4:+50642373	Msa0686240:three_prime_UTR
CATCTGATCCATTGCAAATT+AGG	0.160930	4_4:+50642525	Msa0686240:three_prime_UTR
CACTTTGATCCTCTTGTCTT+TGG	0.165749	4_4:-50640343	None:intergenic
GGGATAGTCCCTCCGGAAAT+TGG	0.186320	4_4:+50641681	Msa0686240:CDS
GTTGATCTTGTTGTTTGTTT+TGG	0.200209	4_4:-50640022	None:intergenic
TTACATTGTCTTAACACTTC+TGG	0.231856	4_4:+50640048	Msa0686240:CDS
CTGTTACATTCTCCTTCTTT+TGG	0.239090	4_4:+50642434	Msa0686240:three_prime_UTR
GACATTTCTGATTGCATCAT+TGG	0.242720	4_4:-50641588	None:intergenic
TTCCTTCGAACCCCAATTTC+CGG	0.243538	4_4:-50641693	None:intergenic
CTCTTCACAACAATCTTTGA+TGG	0.271298	4_4:+50640200	Msa0686240:CDS
TTTCCTTCTCAACCGTTTAC+AGG	0.295477	4_4:+50641959	Msa0686240:CDS
TTGCATTGTCCTTACCTCTT+TGG	0.303567	4_4:-50641306	None:intergenic
TGCAGGTTTAATGTCCGTTT+TGG	0.317732	4_4:-50642594	None:intergenic
CGCTATGCTCTTTGTAGAAA+TGG	0.333391	4_4:-50639917	None:intergenic
GTTGATTGTGATTCTGCTCT+TGG	0.342165	4_4:+50640222	Msa0686240:CDS
TGGTGGATTGATAAACAATA+TGG	0.350380	4_4:+50641659	Msa0686240:CDS
GGATAGTCCCTCCGGAAATT+GGG	0.350458	4_4:+50641682	Msa0686240:CDS
GATGAGTCGAGAAAGATTTC+AGG	0.356426	4_4:-50641744	None:intergenic
CATTAAACCTGCAAGAAATT+CGG	0.370651	4_4:+50642604	Msa0686240:three_prime_UTR
CAACACTGTCATGTCGGAAA+TGG	0.383436	4_4:-50640088	None:intergenic
AACAAAATTGCAGGCAAAGC+TGG	0.393233	4_4:+50641025	Msa0686240:CDS
TCATGAACCGAATTTCTTGC+AGG	0.397044	4_4:-50642611	None:intergenic
ATCTGATCCATTGCAAATTA+GGG	0.401608	4_4:+50642526	Msa0686240:three_prime_UTR
CAAAAGAAGGAGAATGTAAC+AGG	0.403302	4_4:-50642433	None:intergenic
TGATGAATTGTTTGCCAAAG+AGG	0.429741	4_4:+50641292	Msa0686240:CDS
CCAGGATGCAACAAAATTGC+AGG	0.430070	4_4:+50641016	Msa0686240:CDS
TTCAGAGTGTGCAATGTACT+AGG	0.439399	4_4:-50639986	None:intergenic
CCTGACCCGGGTTTCGAAAA+CGG	0.440513	4_4:+50640270	Msa0686240:CDS
CAATGTTGAAGTCAAGTCTT+GGG	0.457823	4_4:-50641271	None:intergenic
AATTTGTATCTACCTGTAAA+CGG	0.474760	4_4:-50641971	None:intergenic
TTCAGAGATTCAAAATCAAA+AGG	0.476636	4_4:+50640479	Msa0686240:CDS
GCGAACAAACTTTCAAGAAA+AGG	0.478145	4_4:+50640292	Msa0686240:CDS
TCAATGTTGAAGTCAAGTCT+TGG	0.479932	4_4:-50641272	None:intergenic
AAAGAGAGAGATTTGTGAGC+AGG	0.484444	4_4:+50642502	Msa0686240:three_prime_UTR
TACGTGCTAAACTACGCACT+TGG	0.495967	4_4:-50639957	None:intergenic
AAAATCACGGAGCAAACAAA+GGG	0.497585	4_4:+50640387	Msa0686240:CDS
ATCAAAGTGAGTGTTGAAGA+AGG	0.498660	4_4:+50640357	Msa0686240:CDS
AACACTTCTGGAAATCTAGT+AGG	0.504501	4_4:+50640060	Msa0686240:CDS
TAACTTGAATGTCCAAAAGA+AGG	0.504694	4_4:-50642446	None:intergenic
ATATCCTACCATCCTCAACT+TGG	0.507057	4_4:+50641879	Msa0686240:CDS
AAAATCACCTTCCCAAGTTG+AGG	0.508180	4_4:-50641891	None:intergenic
CAATATGGGGATAGTCCCTC+CGG	0.510922	4_4:+50641674	Msa0686240:CDS
TATTTGCAAGATTTAGTACC+AGG	0.510967	4_4:+50640998	Msa0686240:CDS
AGAAGAAAAGAGTGAAGTGA+GGG	0.511606	4_4:-50639885	None:intergenic
GGTGGATTGATAAACAATAT+GGG	0.517497	4_4:+50641660	Msa0686240:CDS
GAATTGAATTGAAGATATGC+AGG	0.520798	4_4:-50641615	None:intergenic
GCACAACTAGTTTCATGTTG+TGG	0.521232	4_4:+50641639	Msa0686240:CDS
TGAAGCTAGCAATCTGAAGA+TGG	0.529573	4_4:+50642291	Msa0686240:CDS
GAGAAGAAAAGAGTGAAGTG+AGG	0.532126	4_4:-50639886	None:intergenic
GGAGAAAATTGTGATGATGT+TGG	0.536920	4_4:+50640435	Msa0686240:CDS
GTTCGTGTTCATGTTCATGT+TGG	0.539052	4_4:-50640137	None:intergenic
GTCTCTTCAAAGACAAGTTG+AGG	0.543289	4_4:+50641078	Msa0686240:CDS
CAAAATCACGGAGCAAACAA+AGG	0.545299	4_4:+50640386	Msa0686240:CDS
AAACATTGAATCAAATGCAA+TGG	0.546511	4_4:-50642565	None:intergenic
ATTGAATCAAATGCAATGGA+AGG	0.547369	4_4:-50642561	None:intergenic
CTCCGGAAATTGGGGTTCGA+AGG	0.548238	4_4:+50641691	Msa0686240:CDS
CATTTCCGACATGACAGTGT+TGG	0.552355	4_4:+50640089	Msa0686240:CDS
TAACTCTATGAAACCTGACC+CGG	0.555893	4_4:+50640257	Msa0686240:CDS
CTTCCCAAGTTGAGGATGGT+AGG	0.556292	4_4:-50641883	None:intergenic
CAACTAGTTTCATGTTGTGG+TGG	0.565045	4_4:+50641642	Msa0686240:CDS
GATAGTCCCTCCGGAAATTG+GGG	0.565816	4_4:+50641683	Msa0686240:CDS
ATTGCAAATTAGGGTGTTGG+TGG	0.566623	4_4:+50642535	Msa0686240:three_prime_UTR
CTACCTGTAAACGGTTGAGA+AGG	0.567447	4_4:-50641962	None:intergenic
TTGTGATGATGTTGGTTCCA+AGG	0.568124	4_4:+50640443	Msa0686240:CDS
TCCATTGCAAATTAGGGTGT+TGG	0.573419	4_4:+50642532	Msa0686240:three_prime_UTR
TCAGGCAAAGATGCAGATGC+CGG	0.573718	4_4:-50641726	None:intergenic
TCGAAGGAACATTAATGCAC+CGG	0.582886	4_4:+50641707	Msa0686240:CDS
CTACCATCCTCAACTTGGGA+AGG	0.586675	4_4:+50641884	Msa0686240:CDS
ACCAACACCCTAATTTGCAA+TGG	0.594011	4_4:-50642533	None:intergenic
ACGTGCTAAACTACGCACTT+GGG	0.595977	4_4:-50639956	None:intergenic
TATCCTACCATCCTCAACTT+GGG	0.602359	4_4:+50641880	Msa0686240:CDS
GGTTCCAAGGAAAATTCAAG+AGG	0.608748	4_4:+50640456	Msa0686240:CDS
TCTTTCCAACACTGTCATGT+CGG	0.609762	4_4:-50640094	None:intergenic
ACTTCTGGAAATCTAGTAGG+AGG	0.609823	4_4:+50640063	Msa0686240:CDS
TCACCTTCCCAAGTTGAGGA+TGG	0.614865	4_4:-50641887	None:intergenic
CTTCGAACCCCAATTTCCGG+AGG	0.622595	4_4:-50641690	None:intergenic
TTCGAACCCCAATTTCCGGA+GGG	0.626102	4_4:-50641689	None:intergenic
TGTTGGAAAGACAAAGAGCA+AGG	0.628279	4_4:+50640106	Msa0686240:CDS
AGAAGGTGAATCCAAAATCA+CGG	0.629095	4_4:+50640374	Msa0686240:CDS
GAAAAGGAAAGCTGATAACA+AGG	0.638853	4_4:+50640308	Msa0686240:CDS
AATTGAATTGAAGATATGCA+GGG	0.645477	4_4:-50641614	None:intergenic
ATATGAAGTCCAAAGACAAG+AGG	0.657403	4_4:+50640334	Msa0686240:CDS
ATTCATGTTCGAGCACGTCG+CGG	0.664373	4_4:+50640510	Msa0686240:CDS
GTGGATTGATAAACAATATG+GGG	0.684555	4_4:+50641661	Msa0686240:CDS
AACTCTATGAAACCTGACCC+GGG	0.688237	4_4:+50640258	Msa0686240:CDS
AAGGAAAGCTGATAACAAGG+TGG	0.715030	4_4:+50640311	Msa0686240:CDS
CATTTCCCGAAAAGTAACGT+CGG	0.737392	4_4:-50640173	None:intergenic
AAATCACGGAGCAAACAAAG+GGG	0.739570	4_4:+50640388	Msa0686240:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTAAGTTTAAGTTTATAATA+TGG	+	chr4_4:50641157-50641176	Msa0686240:intron	10.0%
!!	TAAAATTATTTGATCTTTAC+AGG	+	chr4_4:50641548-50641567	Msa0686240:intron	15.0%
!!	TAATCATATTAATGATGATT+AGG	-	chr4_4:50641821-50641840	None:intergenic	15.0%
!!!	TTAAAGTACATAACATATTT+TGG	+	chr4_4:50642373-50642392	Msa0686240:three_prime_UTR	15.0%
!!	AAGAATACAAAGTTGAAAAA+TGG	+	chr4_4:50640414-50640433	Msa0686240:CDS	20.0%
!!!	TCTCTTAATTTGTCAATATT+TGG	+	chr4_4:50640605-50640624	Msa0686240:intron	20.0%
!!	TAGTAAAAAATGTTGTAACA+CGG	+	chr4_4:50640676-50640695	Msa0686240:intron	20.0%
!!!	ACATTTATTTTGTGCAATAT+AGG	+	chr4_4:50640873-50640892	Msa0686240:intron	20.0%
!!!	TGATTTTTCTGTTTATTACT+CGG	+	chr4_4:50640907-50640926	Msa0686240:intron	20.0%
!!	GTATGATAAATTAGTTACTT+AGG	+	chr4_4:50641112-50641131	Msa0686240:intron	20.0%
!!	ATGATTGAAAGTTGAAAATT+CGG	+	chr4_4:50642171-50642190	Msa0686240:intron	20.0%
!!!	TTTCTTATTCTTTTTTCTAG+TGG	-	chr4_4:50642480-50642499	None:intergenic	20.0%
!!!	TTGATCTTGTTGTTTGTTTT+GGG	-	chr4_4:50640024-50640043	None:intergenic	25.0%
!	TTCAGAGATTCAAAATCAAA+AGG	+	chr4_4:50640479-50640498	Msa0686240:CDS	25.0%
!!	CTCATTTTACACAATTGATT+TGG	+	chr4_4:50640653-50640672	Msa0686240:intron	25.0%
!	ATGCTAAAATTACCGTTAAT+AGG	+	chr4_4:50640802-50640821	Msa0686240:intron	25.0%
!!!	TTATTTTGTGCAATATAGGT+TGG	+	chr4_4:50640877-50640896	Msa0686240:intron	25.0%
!!!	CTTTTAAGGTTTTTGTAGAA+AGG	+	chr4_4:50641338-50641357	Msa0686240:intron	25.0%
!	GACTCATAATGCTTTAATTA+CGG	-	chr4_4:50641435-50641454	None:intergenic	25.0%
!!	CAAAAAGTGCAAATCATTTA+TGG	-	chr4_4:50641503-50641522	None:intergenic	25.0%
!	AATTGAATTGAAGATATGCA+GGG	-	chr4_4:50641617-50641636	None:intergenic	25.0%
!!!	GATTAGGAACAATATTTTAG+AGG	-	chr4_4:50641805-50641824	None:intergenic	25.0%
!	AATTTGTATCTACCTGTAAA+CGG	-	chr4_4:50641974-50641993	None:intergenic	25.0%
!	AATGACTTATCAATATCTGT+GGG	-	chr4_4:50642103-50642122	None:intergenic	25.0%
!	AAATGACTTATCAATATCTG+TGG	-	chr4_4:50642104-50642123	None:intergenic	25.0%
!!!	GAATTTTGATAAGAAGCATT+TGG	-	chr4_4:50642345-50642364	None:intergenic	25.0%
!	AAACATTGAATCAAATGCAA+TGG	-	chr4_4:50642568-50642587	None:intergenic	25.0%
!!!	CAATGTTTTGAAAACCAAAA+CGG	+	chr4_4:50642580-50642599	Msa0686240:three_prime_UTR	25.0%
!!!	GTTGATCTTGTTGTTTGTTT+TGG	-	chr4_4:50640025-50640044	None:intergenic	30.0%
	TTACATTGTCTTAACACTTC+TGG	+	chr4_4:50640048-50640067	Msa0686240:CDS	30.0%
	CTAAAATTACCGTTAATAGG+AGG	+	chr4_4:50640805-50640824	Msa0686240:intron	30.0%
	TATTTGCAAGATTTAGTACC+AGG	+	chr4_4:50640998-50641017	Msa0686240:CDS	30.0%
!	TGCAAGTTGTAGAACTTTTA+AGG	+	chr4_4:50641324-50641343	Msa0686240:intron	30.0%
	AACATAAAAAACCATGATGC+TGG	-	chr4_4:50641371-50641390	None:intergenic	30.0%
!!!	GCATCATGGTTTTTTATGTT+AGG	+	chr4_4:50641371-50641390	Msa0686240:intron	30.0%
	GAATTGAATTGAAGATATGC+AGG	-	chr4_4:50641618-50641637	None:intergenic	30.0%
!!	TGGTGGATTGATAAACAATA+TGG	+	chr4_4:50641659-50641678	Msa0686240:CDS	30.0%
!!	GGTGGATTGATAAACAATAT+GGG	+	chr4_4:50641660-50641679	Msa0686240:CDS	30.0%
!	GTGGATTGATAAACAATATG+GGG	+	chr4_4:50641661-50641680	Msa0686240:CDS	30.0%
	ATGACTTATCAATATCTGTG+GGG	-	chr4_4:50642102-50642121	None:intergenic	30.0%
	CTTTGCAAACCTTTATATTC+CGG	+	chr4_4:50642203-50642222	Msa0686240:intron	30.0%
!!!	ATGTTTTGTTTTATGACTGC+AGG	+	chr4_4:50642262-50642281	Msa0686240:intron	30.0%
	TAACTTGAATGTCCAAAAGA+AGG	-	chr4_4:50642449-50642468	None:intergenic	30.0%
	ATCTGATCCATTGCAAATTA+GGG	+	chr4_4:50642526-50642545	Msa0686240:three_prime_UTR	30.0%
	ATTGAATCAAATGCAATGGA+AGG	-	chr4_4:50642564-50642583	None:intergenic	30.0%
	CATTAAACCTGCAAGAAATT+CGG	+	chr4_4:50642604-50642623	Msa0686240:three_prime_UTR	30.0%
	AGAAGAAAAGAGTGAAGTGA+GGG	-	chr4_4:50639888-50639907	None:intergenic	35.0%
!	AACACTTCTGGAAATCTAGT+AGG	+	chr4_4:50640060-50640079	Msa0686240:CDS	35.0%
	CTCTTCACAACAATCTTTGA+TGG	+	chr4_4:50640200-50640219	Msa0686240:CDS	35.0%
	GCGAACAAACTTTCAAGAAA+AGG	+	chr4_4:50640292-50640311	Msa0686240:CDS	35.0%
	GAAAAGGAAAGCTGATAACA+AGG	+	chr4_4:50640308-50640327	Msa0686240:CDS	35.0%
	ATATGAAGTCCAAAGACAAG+AGG	+	chr4_4:50640334-50640353	Msa0686240:CDS	35.0%
!!	ATCAAAGTGAGTGTTGAAGA+AGG	+	chr4_4:50640357-50640376	Msa0686240:CDS	35.0%
	AGAAGGTGAATCCAAAATCA+CGG	+	chr4_4:50640374-50640393	Msa0686240:CDS	35.0%
	AAAATCACGGAGCAAACAAA+GGG	+	chr4_4:50640387-50640406	Msa0686240:CDS	35.0%
!	GGAGAAAATTGTGATGATGT+TGG	+	chr4_4:50640435-50640454	Msa0686240:CDS	35.0%
!	TGAACCTCTTGAATTTTCCT+TGG	-	chr4_4:50640463-50640482	None:intergenic	35.0%
	CAGATTCTACCTCCTATTAA+CGG	-	chr4_4:50640817-50640836	None:intergenic	35.0%
	GTTTATTACTCGGCGTTTAA+AGG	+	chr4_4:50640917-50640936	Msa0686240:intron	35.0%
	CAATGTTGAAGTCAAGTCTT+GGG	-	chr4_4:50641274-50641293	None:intergenic	35.0%
	TCAATGTTGAAGTCAAGTCT+TGG	-	chr4_4:50641275-50641294	None:intergenic	35.0%
	TGATGAATTGTTTGCCAAAG+AGG	+	chr4_4:50641292-50641311	Msa0686240:CDS	35.0%
	AATTGTTTGCCAAAGAGGTA+AGG	+	chr4_4:50641297-50641316	Msa0686240:intron	35.0%
	AGATGATACAGCCTTAATCA+CGG	-	chr4_4:50641404-50641423	None:intergenic	35.0%
	GACATTTCTGATTGCATCAT+TGG	-	chr4_4:50641591-50641610	None:intergenic	35.0%
!!!	CATAGTGTCGATTTTGATCA+AGG	+	chr4_4:50641923-50641942	Msa0686240:CDS	35.0%
!!	CTTTCTACTTCTAAGATTGC+AGG	-	chr4_4:50642027-50642046	None:intergenic	35.0%
	AAAGGTTTGCAAAGTAACCA+TGG	-	chr4_4:50642197-50642216	None:intergenic	35.0%
	CTTTATATTCCGGAAAAACG+CGG	+	chr4_4:50642213-50642232	Msa0686240:intron	35.0%
	CAAAAGAAGGAGAATGTAAC+AGG	-	chr4_4:50642436-50642455	None:intergenic	35.0%
!	CTGTTACATTCTCCTTCTTT+TGG	+	chr4_4:50642434-50642453	Msa0686240:three_prime_UTR	35.0%
	CATCTGATCCATTGCAAATT+AGG	+	chr4_4:50642525-50642544	Msa0686240:three_prime_UTR	35.0%
	GAGAAGAAAAGAGTGAAGTG+AGG	-	chr4_4:50639889-50639908	None:intergenic	40.0%
	CGCTATGCTCTTTGTAGAAA+TGG	-	chr4_4:50639920-50639939	None:intergenic	40.0%
	TTCAGAGTGTGCAATGTACT+AGG	-	chr4_4:50639989-50640008	None:intergenic	40.0%
!	ACTTCTGGAAATCTAGTAGG+AGG	+	chr4_4:50640063-50640082	Msa0686240:CDS	40.0%
	TCTTTCCAACACTGTCATGT+CGG	-	chr4_4:50640097-50640116	None:intergenic	40.0%
	TGTTGGAAAGACAAAGAGCA+AGG	+	chr4_4:50640106-50640125	Msa0686240:CDS	40.0%
	GTTCGTGTTCATGTTCATGT+TGG	-	chr4_4:50640140-50640159	None:intergenic	40.0%
	CATTTCCCGAAAAGTAACGT+CGG	-	chr4_4:50640176-50640195	None:intergenic	40.0%
	GTTGATTGTGATTCTGCTCT+TGG	+	chr4_4:50640222-50640241	Msa0686240:CDS	40.0%
	TAACTCTATGAAACCTGACC+CGG	+	chr4_4:50640257-50640276	Msa0686240:CDS	40.0%
	AAGGAAAGCTGATAACAAGG+TGG	+	chr4_4:50640311-50640330	Msa0686240:CDS	40.0%
	CACTTTGATCCTCTTGTCTT+TGG	-	chr4_4:50640346-50640365	None:intergenic	40.0%
!!	CTTTGTTTGCTCCGTGATTT+TGG	-	chr4_4:50640388-50640407	None:intergenic	40.0%
	CAAAATCACGGAGCAAACAA+AGG	+	chr4_4:50640386-50640405	Msa0686240:CDS	40.0%
	AAATCACGGAGCAAACAAAG+GGG	+	chr4_4:50640388-50640407	Msa0686240:CDS	40.0%
!!	TTGTGATGATGTTGGTTCCA+AGG	+	chr4_4:50640443-50640462	Msa0686240:CDS	40.0%
	GGTTCCAAGGAAAATTCAAG+AGG	+	chr4_4:50640456-50640475	Msa0686240:CDS	40.0%
	GCACAAAACAGAACAAACGT+TGG	-	chr4_4:50640943-50640962	None:intergenic	40.0%
!	ACGTTTGTTCTGTTTTGTGC+AGG	+	chr4_4:50640943-50640962	Msa0686240:intron	40.0%
!	TCTGTTTTGTGCAGGTTAGA+AGG	+	chr4_4:50640951-50640970	Msa0686240:intron	40.0%
!	CTGTTTTGTGCAGGTTAGAA+GGG	+	chr4_4:50640952-50640971	Msa0686240:intron	40.0%
	AACAAAATTGCAGGCAAAGC+TGG	+	chr4_4:50641025-50641044	Msa0686240:CDS	40.0%
	GTCTCTTCAAAGACAAGTTG+AGG	+	chr4_4:50641078-50641097	Msa0686240:CDS	40.0%
	TCATCGACAAGAACTGCATT+TGG	-	chr4_4:50641235-50641254	None:intergenic	40.0%
	TTGCATTGTCCTTACCTCTT+TGG	-	chr4_4:50641309-50641328	None:intergenic	40.0%
!	GGTTTTTGTAGAAAGGTTCG+CGG	+	chr4_4:50641345-50641364	Msa0686240:intron	40.0%
	TGTTGTGATTCGCGATATTG+TGG	-	chr4_4:50641477-50641496	None:intergenic	40.0%
!	GCACAACTAGTTTCATGTTG+TGG	+	chr4_4:50641639-50641658	Msa0686240:CDS	40.0%
!	CAACTAGTTTCATGTTGTGG+TGG	+	chr4_4:50641642-50641661	Msa0686240:CDS	40.0%
	TCGAAGGAACATTAATGCAC+CGG	+	chr4_4:50641707-50641726	Msa0686240:CDS	40.0%
	GATGAGTCGAGAAAGATTTC+AGG	-	chr4_4:50641747-50641766	None:intergenic	40.0%
	ATATCCTACCATCCTCAACT+TGG	+	chr4_4:50641879-50641898	Msa0686240:CDS	40.0%
	TATCCTACCATCCTCAACTT+GGG	+	chr4_4:50641880-50641899	Msa0686240:CDS	40.0%
	AAAATCACCTTCCCAAGTTG+AGG	-	chr4_4:50641894-50641913	None:intergenic	40.0%
	TTTCCTTCTCAACCGTTTAC+AGG	+	chr4_4:50641959-50641978	Msa0686240:CDS	40.0%
!!	ACTTCTAAGATTGCAGGCTA+AGG	-	chr4_4:50642021-50642040	None:intergenic	40.0%
	GAAAGTTGAAAATTCGGCCA+TGG	+	chr4_4:50642177-50642196	Msa0686240:intron	40.0%
!	CGCGTTTTTCCGGAATATAA+AGG	-	chr4_4:50642215-50642234	None:intergenic	40.0%
!	TCTAATCTACCGCGTTTTTC+CGG	-	chr4_4:50642225-50642244	None:intergenic	40.0%
	AAAACGCGGTAGATTAGATG+CGG	+	chr4_4:50642227-50642246	Msa0686240:intron	40.0%
	TGAAGCTAGCAATCTGAAGA+TGG	+	chr4_4:50642291-50642310	Msa0686240:CDS	40.0%
	TTGGAGTGAGCAAAAAGTTC+AGG	-	chr4_4:50642326-50642345	None:intergenic	40.0%
	AAAGAGAGAGATTTGTGAGC+AGG	+	chr4_4:50642502-50642521	Msa0686240:three_prime_UTR	40.0%
	TCCATTGCAAATTAGGGTGT+TGG	+	chr4_4:50642532-50642551	Msa0686240:three_prime_UTR	40.0%
!	ACCAACACCCTAATTTGCAA+TGG	-	chr4_4:50642536-50642555	None:intergenic	40.0%
!!	ATTGCAAATTAGGGTGTTGG+TGG	+	chr4_4:50642535-50642554	Msa0686240:three_prime_UTR	40.0%
!	TGCAGGTTTAATGTCCGTTT+TGG	-	chr4_4:50642597-50642616	None:intergenic	40.0%
	TCATGAACCGAATTTCTTGC+AGG	-	chr4_4:50642614-50642633	None:intergenic	40.0%
	ACGTGCTAAACTACGCACTT+GGG	-	chr4_4:50639959-50639978	None:intergenic	45.0%
	TACGTGCTAAACTACGCACT+TGG	-	chr4_4:50639960-50639979	None:intergenic	45.0%
	CAACACTGTCATGTCGGAAA+TGG	-	chr4_4:50640091-50640110	None:intergenic	45.0%
	CATTTCCGACATGACAGTGT+TGG	+	chr4_4:50640089-50640108	Msa0686240:CDS	45.0%
!!!	GCAACACCGACGTTACTTTT+CGG	+	chr4_4:50640167-50640186	Msa0686240:CDS	45.0%
!!!	CAACACCGACGTTACTTTTC+GGG	+	chr4_4:50640168-50640187	Msa0686240:CDS	45.0%
!!!	CGACGTTACTTTTCGGGAAA+TGG	+	chr4_4:50640174-50640193	Msa0686240:CDS	45.0%
	AACTCTATGAAACCTGACCC+GGG	+	chr4_4:50640258-50640277	Msa0686240:CDS	45.0%
!	CCTGCAATTTTGTTGCATCC+TGG	-	chr4_4:50641019-50641038	None:intergenic	45.0%
	CCAGGATGCAACAAAATTGC+AGG	+	chr4_4:50641016-50641035	Msa0686240:CDS	45.0%
	CGCGATATTGTGGATAATCG+CGG	-	chr4_4:50641467-50641486	None:intergenic	45.0%
	TTCCTTCGAACCCCAATTTC+CGG	-	chr4_4:50641696-50641715	None:intergenic	45.0%
	CTACCTGTAAACGGTTGAGA+AGG	-	chr4_4:50641965-50641984	None:intergenic	45.0%
!!!	TTTTACTAATTTTTTTAATT+TGG	+	chr4_4:50640775-50640794	Msa0686240:intron	5.0%
!!	TGTTCGCCGTTTTCGAAACC+CGG	-	chr4_4:50640279-50640298	None:intergenic	50.0%
	ATTCATGTTCGAGCACGTCG+CGG	+	chr4_4:50640510-50640529	Msa0686240:CDS	50.0%
	TAGGTCCACGACCGTGATTA+AGG	+	chr4_4:50641390-50641409	Msa0686240:intron	50.0%
	TACAGCCTTAATCACGGTCG+TGG	-	chr4_4:50641398-50641417	None:intergenic	50.0%
	CAATATGGGGATAGTCCCTC+CGG	+	chr4_4:50641674-50641693	Msa0686240:CDS	50.0%
	GGATAGTCCCTCCGGAAATT+GGG	+	chr4_4:50641682-50641701	Msa0686240:CDS	50.0%
	GATAGTCCCTCCGGAAATTG+GGG	+	chr4_4:50641683-50641702	Msa0686240:CDS	50.0%
	TTCGAACCCCAATTTCCGGA+GGG	-	chr4_4:50641692-50641711	None:intergenic	50.0%
	TCAGGCAAAGATGCAGATGC+CGG	-	chr4_4:50641729-50641748	None:intergenic	50.0%
	TAGAGGACAGATACGCAGAG+AGG	-	chr4_4:50641788-50641807	None:intergenic	50.0%
!	CTTCCCAAGTTGAGGATGGT+AGG	-	chr4_4:50641886-50641905	None:intergenic	50.0%
	CTACCATCCTCAACTTGGGA+AGG	+	chr4_4:50641884-50641903	Msa0686240:CDS	50.0%
!	TCACCTTCCCAAGTTGAGGA+TGG	-	chr4_4:50641890-50641909	None:intergenic	50.0%
	CCTGACCCGGGTTTCGAAAA+CGG	+	chr4_4:50640270-50640289	Msa0686240:CDS	55.0%
!!	GTTCGCCGTTTTCGAAACCC+GGG	-	chr4_4:50640278-50640297	None:intergenic	55.0%
	GGGATAGTCCCTCCGGAAAT+TGG	+	chr4_4:50641681-50641700	Msa0686240:CDS	55.0%
	CTTCGAACCCCAATTTCCGG+AGG	-	chr4_4:50641693-50641712	None:intergenic	55.0%
	CTCCGGAAATTGGGGTTCGA+AGG	+	chr4_4:50641691-50641710	Msa0686240:CDS	55.0%
!	CCGTTTTCGAAACCCGGGTC+AGG	-	chr4_4:50640273-50640292	None:intergenic	60.0%
	AAGGTTCGCGGCCAGCATCA+TGG	+	chr4_4:50641357-50641376	Msa0686240:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	50639875	50642638	50639875	ID=Msa0686240;Name=Msa0686240
chr4_4	mRNA	50639875	50642638	50639875	ID=Msa0686240-mRNA-1;Parent=Msa0686240;Name=Msa0686240-mRNA-1;_AED=0.11;_eAED=0.11;_QI=170\|1\|1\|1\|1\|1\|6\|317\|358
chr4_4	exon	50639875	50640566	50639875	ID=Msa0686240-mRNA-1:exon:12993;Parent=Msa0686240-mRNA-1
chr4_4	exon	50640965	50641099	50640965	ID=Msa0686240-mRNA-1:exon:12994;Parent=Msa0686240-mRNA-1
chr4_4	exon	50641242	50641313	50641242	ID=Msa0686240-mRNA-1:exon:12995;Parent=Msa0686240-mRNA-1
chr4_4	exon	50641570	50641776	50641570	ID=Msa0686240-mRNA-1:exon:12996;Parent=Msa0686240-mRNA-1
chr4_4	exon	50641878	50641980	50641878	ID=Msa0686240-mRNA-1:exon:12997;Parent=Msa0686240-mRNA-1
chr4_4	exon	50642284	50642638	50642284	ID=Msa0686240-mRNA-1:exon:12998;Parent=Msa0686240-mRNA-1
chr4_4	five_prime_UTR	50639875	50640044	50639875	ID=Msa0686240-mRNA-1:five_prime_utr;Parent=Msa0686240-mRNA-1
chr4_4	CDS	50640045	50640566	50640045	ID=Msa0686240-mRNA-1:cds;Parent=Msa0686240-mRNA-1
chr4_4	CDS	50640965	50641099	50640965	ID=Msa0686240-mRNA-1:cds;Parent=Msa0686240-mRNA-1
chr4_4	CDS	50641242	50641313	50641242	ID=Msa0686240-mRNA-1:cds;Parent=Msa0686240-mRNA-1
chr4_4	CDS	50641570	50641776	50641570	ID=Msa0686240-mRNA-1:cds;Parent=Msa0686240-mRNA-1
chr4_4	CDS	50641878	50641980	50641878	ID=Msa0686240-mRNA-1:cds;Parent=Msa0686240-mRNA-1
chr4_4	CDS	50642284	50642321	50642284	ID=Msa0686240-mRNA-1:cds;Parent=Msa0686240-mRNA-1
chr4_4	three_prime_UTR	50642322	50642638	50642322	ID=Msa0686240-mRNA-1:three_prime_utr;Parent=Msa0686240-mRNA-1

Gene Sequence

>Msa0686240

ATGTTACATTGTCTTAACACTTCTGGAAATCTAGTAGGAGGAACCATTTCCGACATGACAGTGTTGGAAAGACAAAGAGCAAGGAAGAAGTTCCAACATGAACATGAACACGAACAAGATCAGCAACACCGACGTTACTTTTCGGGAAATGGTTTCTCTTCACAACAATCTTTGATGGTTGATTGTGATTCTGCTCTTGGTGAAGTTGTAGCTAACTCTATGAAACCTGACCCGGGTTTCGAAAACGGCGAACAAACTTTCAAGAAAAGGAAAGCTGATAACAAGGTGGATATGAAGTCCAAAGACAAGAGGATCAAAGTGAGTGTTGAAGAAGGTGAATCCAAAATCACGGAGCAAACAAAGGGGCAGAAGAATACAAAGTTGAAAAATGGAGAAAATTGTGATGATGTTGGTTCCAAGGAAAATTCAAGAGGTTCAGAGATTCAAAATCAAAAGGCTGATTACATTCATGTTCGAGCACGTCGCGGTCAAGCTACTGATAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATAAGCGAAAGAATGAAGTATTTGCAAGATTTAGTACCAGGATGCAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTCTTGTCGATGAAATTAGCAGCTGTGAACCCAAGACTTGACTTCAACATTGATGAATTGTTTGCCAAAGAGGTGTTTACTCAAAATTTTCCAATGATGCAATCAGAAATGTCTAACCCTGCATATCTTCAATTCAATTCAGCACAACTAGTTTCATGTTGTGGTGGATTGATAAACAATATGGGGATAGTCCCTCCGGAAATTGGGGTTCGAAGGAACATTAATGCACCGGCATCTGCATCTTTGCCTGAAATCTTTCTCGACTCATCATGTTTCACTCATATCCTACCATCCTCAACTTGGGAAGGTGATTTTCAAAATCTTCATAGTGTCGATTTTGATCAAGGAAGATCAACATCATTTCCTTCTCAACCGTTTACAGGCATGATTGAAGCTAGCAATCTGAAGATGGAGATGTAA

Protein sequence

>Msa0686240

MLHCLNTSGNLVGGTISDMTVLERQRARKKFQHEHEHEQDQQHRRYFSGNGFSSQQSLMVDCDSALGEVVANSMKPDPGFENGEQTFKKRKADNKVDMKSKDKRIKVSVEEGESKITEQTKGQKNTKLKNGENCDDVGSKENSRGSEIQNQKADYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVFTQNFPMMQSEMSNPAYLQFNSAQLVSCCGGLINNMGIVPPEIGVRRNINAPASASLPEIFLDSSCFTHILPSSTWEGDFQNLHSVDFDQGRSTSFPSQPFTGMIEASNLKMEM*