AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0375430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0375430 MtrunA17_Chr3g0125821 97.714 175 4 0 1 175 1 175 3.32e-126 352
Msa0375430 MtrunA17_Chr2g0317731 69.167 120 36 1 55 173 54 173 8.40e-62 189
Msa0375430 MtrunA17_Chr8g0360031 63.077 130 48 0 44 173 47 176 3.87e-61 187
Msa0375430 MtrunA17_Chr4g0044731 47.573 103 54 0 73 175 68 170 2.34e-34 119
Msa0375430 MtrunA17_Chr2g0317721 47.222 108 57 0 64 171 35 142 2.98e-32 112
Msa0375430 MtrunA17_Chr2g0317701 43.363 113 63 1 59 170 35 147 1.94e-30 108
Msa0375430 MtrunA17_Chr2g0317711 42.593 108 61 1 64 171 35 141 1.10e-25 95.9
Msa0375430 MtrunA17_Chr1g0211871 39.640 111 55 3 70 175 70 173 1.58e-24 94.0
Msa0375430 MtrunA17_Chr1g0201781 38.144 97 60 0 74 170 66 162 3.74e-22 87.8
Msa0375430 MtrunA17_Chr2g0317691 53.125 64 30 0 110 173 3 66 2.16e-20 80.9
Msa0375430 MtrunA17_Chr5g0404831 39.252 107 60 3 70 173 11 115 4.46e-20 80.9
Msa0375430 MtrunA17_Chr1g0155721 35.780 109 65 3 70 175 9 115 1.13e-17 74.7
Msa0375430 MtrunA17_Chr7g0216481 36.905 84 51 2 89 172 51 132 2.99e-17 73.9
Msa0375430 MtrunA17_Chr3g0142051 34.513 113 69 3 63 172 2 112 4.63e-17 73.2
Msa0375430 MtrunA17_Chr4g0052481 36.275 102 52 4 61 159 64 155 1.25e-15 70.5
Msa0375430 MtrunA17_Chr7g0258871 27.564 156 95 4 15 159 21 169 4.78e-14 66.6
Msa0375430 MtrunA17_Chr8g0393201 38.750 80 47 2 93 172 256 333 7.76e-14 68.2
Msa0375430 MtrunA17_Chr1g0164481 32.558 86 56 1 88 171 94 179 1.18e-12 62.8
Msa0375430 MtrunA17_Chr1g0194961 34.831 89 56 1 66 152 145 233 2.67e-12 63.9
Msa0375430 MtrunA17_Chr5g0438731 40.000 70 42 0 82 151 74 143 7.51e-12 62.8
Msa0375430 MtrunA17_Chr7g0249461 30.882 136 81 5 29 159 44 171 1.94e-11 59.7
Msa0375430 MtrunA17_Chr7g0245141 33.803 71 46 1 89 159 49 118 4.80e-11 57.8
Msa0375430 MtrunA17_Chr2g0287471 35.556 90 58 0 70 159 30 119 9.88e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0375430 AT3G15360.1 58.197 122 48 1 55 173 70 191 8.63e-51 162
Msa0375430 AT1G03680.1 47.020 151 80 0 23 173 29 179 1.29e-49 158
Msa0375430 AT4G03520.1 51.639 122 59 0 52 173 64 185 3.37e-49 157
Msa0375430 AT2G15570.1 52.427 103 49 0 73 175 71 173 1.10e-37 127
Msa0375430 AT2G15570.2 52.427 103 49 0 73 175 72 174 1.11e-37 128
Msa0375430 AT4G03520.2 54.930 71 32 0 103 173 1 71 1.02e-26 96.7
Msa0375430 AT1G76760.1 35.606 132 79 2 39 170 40 165 3.71e-23 90.5
Msa0375430 AT1G43560.1 39.175 97 59 0 74 170 64 160 8.43e-23 89.7
Msa0375430 AT1G50320.1 31.852 135 78 4 46 175 49 174 2.90e-19 80.9
Msa0375430 AT3G51030.1 36.842 114 67 3 63 173 2 113 1.11e-18 77.4
Msa0375430 AT1G19730.1 34.513 113 70 2 63 172 2 113 1.46e-18 77.4
Msa0375430 AT2G35010.2 35.583 163 85 8 8 159 27 180 4.79e-17 75.1
Msa0375430 AT2G35010.1 35.583 163 85 8 8 159 27 180 4.79e-17 75.1
Msa0375430 AT5G42980.1 37.500 88 53 2 85 172 26 111 7.36e-17 72.8
Msa0375430 AT4G12170.1 36.538 104 65 1 70 173 51 153 2.87e-16 72.4
Msa0375430 AT1G52990.1 42.391 92 51 2 83 173 223 313 8.98e-16 73.6
Msa0375430 AT5G39950.1 39.759 83 48 2 89 171 50 130 1.95e-15 69.7
Msa0375430 AT1G45145.1 35.294 85 51 2 78 159 16 99 7.38e-14 65.1
Msa0375430 AT1G31020.1 41.096 73 40 2 88 158 73 144 1.10e-13 65.5
Msa0375430 AT3G54960.1 30.097 103 71 1 69 171 100 201 1.09e-11 62.8
Msa0375430 AT3G54960.2 30.097 103 71 1 69 171 100 201 1.15e-11 62.8
Msa0375430 AT1G21750.2 37.975 79 47 1 70 146 376 454 3.03e-11 61.2
Msa0375430 AT1G21750.1 37.975 79 47 1 70 146 376 454 3.39e-11 61.2
Msa0375430 AT1G59730.1 30.108 93 63 2 80 172 37 127 3.79e-11 58.2
Msa0375430 AT3G06730.1 29.885 87 59 1 86 170 94 180 4.31e-11 59.3
Msa0375430 AT2G32920.1 36.111 72 46 0 76 147 170 241 4.43e-11 60.8

Find 51 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTGGTTCTTGGAATTT+TGG 0.061626 3_1:-75174706 Msa0375430:five_prime_UTR
AAGGATTATCTTTCAATATA+TGG 0.206443 3_1:-75171935 Msa0375430:three_prime_UTR
TAACTCTCATTTCTGGTTCT+TGG 0.224747 3_1:-75174714 Msa0375430:five_prime_UTR
CTAATGATAACTCTCATTTC+TGG 0.268970 3_1:-75174721 Msa0375430:five_prime_UTR
CCTTAAAATCGATGATTGTT+TGG 0.302028 3_1:-75171813 Msa0375430:three_prime_UTR
TTGGCTAGCTCATCAATAAT+AGG 0.304078 3_1:+75172309 Msa0375420:three_prime_UTR
CCGTACTTTGTTGCTATGTT+TGG 0.325721 3_1:+75172237 Msa0375420:three_prime_UTR
CTCCATTGTTTCCAACTTCA+AGG 0.326814 3_1:-75174365 Msa0375430:CDS
CAACAACCAGTTACTATTGT+AGG 0.369089 3_1:-75171769 None:intergenic
CTCTTCAACTCAATAGTTTG+TGG 0.382148 3_1:+75174461 Msa0375420:three_prime_UTR
ATCTTTATCATATCTATGTA+AGG 0.391983 3_1:-75171954 Msa0375430:three_prime_UTR
GTTTCCAACTTCAAGGGAAA+AGG 0.418825 3_1:-75174358 Msa0375430:CDS
TACAATAGTAACTGGTTGTT+GGG 0.430595 3_1:+75171771 Msa0375420:three_prime_UTR
CTACAATAGTAACTGGTTGT+TGG 0.470232 3_1:+75171770 Msa0375420:three_prime_UTR
TGGAGGAAGACACTGAGGTC+TGG 0.484266 3_1:+75174383 Msa0375420:three_prime_UTR
CACCATGGTGTGGTCCATGC+AGG 0.487978 3_1:-75172341 Msa0375430:CDS
AGTTTGTGGAAAGTGCAGTT+AGG 0.488443 3_1:+75174475 Msa0375420:three_prime_UTR
TCCATGCCCTGCAAGGCAAA+AGG 0.493517 3_1:-75171985 Msa0375430:three_prime_UTR
TTGCAGGGCATGGAAAAGAA+TGG 0.497539 3_1:+75171994 Msa0375420:three_prime_UTR
AGGTAATCAACATTCAAAGA+AGG 0.499663 3_1:+75171833 Msa0375420:three_prime_UTR
AACAACCAGTTACTATTGTA+GGG 0.513311 3_1:-75171768 None:intergenic
TTTCTGTAGGCAACACCAGA+TGG 0.513750 3_1:+75174273 Msa0375420:three_prime_UTR
TGCAGGGCATGGAAAAGAAT+GGG 0.514634 3_1:+75171995 Msa0375420:three_prime_UTR
TTGTGAGGTTCTAAGAAGGC+TGG 0.515461 3_1:+75174605 Msa0375420:three_prime_UTR
TGCAAGTGAAACCCCTGTGC+TGG 0.515943 3_1:-75172376 Msa0375430:CDS
GAGCAGTGACTGACTCAAGC+TGG 0.516226 3_1:-75172413 Msa0375430:CDS
TCCCTTGAAGTTGGAAACAA+TGG 0.517273 3_1:+75174363 Msa0375420:three_prime_UTR
TCCATTGTTTCCAACTTCAA+GGG 0.526913 3_1:-75174364 Msa0375430:CDS
GAGCTAGCCAAAGAATATGC+TGG 0.527432 3_1:-75172297 Msa0375430:CDS
TGGATAAGCTTCTAGTGTTG+TGG 0.530759 3_1:+75174512 Msa0375420:three_prime_UTR
TCAACACTATCATTCCCATC+TGG 0.532444 3_1:-75174288 Msa0375430:CDS
GTTGTAGACAGAGTAGACTT+TGG 0.532653 3_1:+75172144 Msa0375420:three_prime_UTR
CCAAACATAGCAACAAAGTA+CGG 0.542679 3_1:-75172237 Msa0375430:CDS
TTGAAATAAAGAAATATACA+AGG 0.553757 3_1:+75171893 Msa0375420:three_prime_UTR
GTCTACTCTGTCTACAACTG+TGG 0.556776 3_1:-75172139 Msa0375430:CDS
TAGATTGTGAGGTTCTAAGA+AGG 0.562281 3_1:+75174601 Msa0375420:three_prime_UTR
GGGTTTCACTTGCAAGAACA+AGG 0.564621 3_1:+75172385 Msa0375420:three_prime_UTR
GGATATTATTATAGATTGTG+AGG 0.572535 3_1:+75174590 Msa0375420:three_prime_UTR
GCTCGTGAAGCTGTAAATGA+AGG 0.575661 3_1:-75174231 Msa0375430:intron
AAGACACTGAGGTCTGGCTG+TGG 0.576209 3_1:+75174389 Msa0375420:three_prime_UTR
TTCTGTAGGCAACACCAGAT+GGG 0.579739 3_1:+75174274 Msa0375420:three_prime_UTR
ATAAGCTTCTAGTGTTGTGG+TGG 0.584014 3_1:+75174515 Msa0375420:three_prime_UTR
TGTGTGTATGTGTTTGCAAG+TGG 0.593815 3_1:+75174569 Msa0375420:three_prime_UTR
CTTGAAGTTGGAAACAATGG+AGG 0.602873 3_1:+75174366 Msa0375420:three_prime_UTR
ATAGGCGCTATCATCCTGCA+TGG 0.617910 3_1:+75172327 Msa0375420:three_prime_UTR
TAATCAACATTCAAAGAAGG+AGG 0.626601 3_1:+75171836 Msa0375420:three_prime_UTR
TTAGTGGGACAAAAGTAGAG+AGG 0.636702 3_1:-75174666 Msa0375430:five_prime_UTR
TAAGAAGGCTGGAATTCATG+TGG 0.669801 3_1:+75174616 Msa0375420:three_prime_UTR
ATCCTGCATGGACCACACCA+TGG 0.683330 3_1:+75172339 Msa0375420:three_prime_UTR
GAAGGCTGGAATTCATGTGG+TGG 0.705017 3_1:+75174619 Msa0375420:three_prime_UTR
AACAATGGAGGAAGACACTG+AGG 0.723169 3_1:+75174378 Msa0375420:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGTTCTATAAATTATTT+TGG - chr3_1:75173031-75173050 Msa0375430:intron 10.0%
!!! AAATTAATTTAATTTTTGAC+CGG - chr3_1:75173296-75173315 Msa0375430:intron 10.0%
!!! TATATGATATTTTTATCTAA+AGG - chr3_1:75173506-75173525 Msa0375430:intron 10.0%
!!! ATATGATATTTTTATCTAAA+GGG - chr3_1:75173507-75173526 Msa0375430:intron 10.0%
!!! ATTTTTTTCATCTTATAAGT+TGG - chr3_1:75172427-75172446 Msa0375430:intron 15.0%
!!! AAGCTTATTTAAGATATTTT+CGG - chr3_1:75172495-75172514 Msa0375430:intron 15.0%
!! AGGAAAAAAAAAAAAAAAAC+AGG + chr3_1:75173215-75173234 Msa0375420:intron 15.0%
!! TTGAAATAAAGAAATATACA+AGG + chr3_1:75174599-75174618 Msa0375420:three_prime_UTR 15.0%
!! TAAGTTCAATTATAATGTGA+AGG + chr3_1:75172682-75172701 Msa0375420:intron 20.0%
!! AATAAAATATGTACCTAATG+AGG - chr3_1:75173130-75173149 Msa0375430:intron 20.0%
!!! TAATTCATTTAACTAGTTTC+CGG + chr3_1:75173318-75173337 Msa0375420:intron 20.0%
!! AAAATTCAGAATACATTACA+AGG + chr3_1:75173781-75173800 Msa0375420:intron 20.0%
!!! TGAATTTTATTTTCTCATTG+AGG - chr3_1:75173793-75173812 Msa0375430:intron 20.0%
!! ATCTTTATCATATCTATGTA+AGG - chr3_1:75174535-75174554 Msa0375430:five_prime_UTR 20.0%
!! AAGGATTATCTTTCAATATA+TGG - chr3_1:75174554-75174573 Msa0375430:five_prime_UTR 20.0%
!!! CATTTTGTAAAGTTTTACAT+TGG - chr3_1:75174621-75174640 Msa0375430:five_prime_UTR 20.0%
! GGATATTATTATAGATTGTG+AGG + chr3_1:75171902-75171921 Msa0375420:three_prime_UTR 25.0%
!! AATAAAACGAGATTTTCTGT+AGG + chr3_1:75172232-75172251 Msa0375420:three_prime_UTR 25.0%
! AAGATGAAAAAAATGTCTTC+AGG + chr3_1:75172421-75172440 Msa0375420:three_prime_UTR 25.0%
! TCAATTATAATGTGAAGGTA+AGG + chr3_1:75172677-75172696 Msa0375420:intron 25.0%
! CATTCATATGAAGAAAGTAA+GGG + chr3_1:75172961-75172980 Msa0375420:intron 25.0%
!! AGAAATAGAGTAGATTTGTT+AGG + chr3_1:75173607-75173626 Msa0375420:intron 25.0%
!! CAAATTAACTTTTGCATGTT+TGG + chr3_1:75173985-75174004 Msa0375420:intron 25.0%
!! AATTTTTCCAGCATATTCTT+TGG + chr3_1:75174202-75174221 Msa0375420:intron 25.0%
! TTCTTGAAAAATAGAACAGT+TGG + chr3_1:75174291-75174310 Msa0375420:three_prime_UTR 25.0%
!!! ACTGTTCTATTTTTCAAGAA+TGG - chr3_1:75174291-75174310 Msa0375430:CDS 25.0%
!! GAGAAAAAAGAAAGTGTAAT+TGG - chr3_1:75174315-75174334 Msa0375430:CDS 25.0%
! ATGCATTATAACACCAAAAA+TGG - chr3_1:75174419-75174438 Msa0375430:CDS 25.0%
!!! ATTTCTGGTTCTTGGAATTT+TGG - chr3_1:75171783-75171802 Msa0375430:three_prime_UTR 30.0%
! TACTTTTGTCCCACTAAAAA+GGG + chr3_1:75171820-75171839 Msa0375420:three_prime_UTR 30.0%
!!! GTGGTGGTTTTTAATTTGTT+TGG + chr3_1:75171961-75171980 Msa0375420:three_prime_UTR 30.0%
TTACACAAAAAGTAGCAACA+TGG - chr3_1:75172053-75172072 Msa0375430:three_prime_UTR 30.0%
TTCAAGAAAAACAGTTCACA+AGG + chr3_1:75172298-75172317 Msa0375420:three_prime_UTR 30.0%
TGAAACCTTAAGATAGTTTG+TGG - chr3_1:75172640-75172659 Msa0375430:intron 30.0%
!! GTGTAAGTTTTAACCTGTTT+AGG + chr3_1:75172736-75172755 Msa0375420:intron 30.0%
GTTAAAACTTACACTGTGTT+TGG - chr3_1:75172742-75172761 Msa0375430:intron 30.0%
CCATTCATATGAAGAAAGTA+AGG + chr3_1:75172962-75172981 Msa0375420:intron 30.0%
CCTTACTTTCTTCATATGAA+TGG - chr3_1:75172959-75172978 Msa0375430:intron 30.0%
TTGGTGCAAATGCAATATAT+TGG - chr3_1:75173170-75173189 Msa0375430:intron 30.0%
AATGCAATATATTGGTGTGT+CGG - chr3_1:75173178-75173197 Msa0375430:intron 30.0%
ATCTGCTATCTGAACATTAA+GGG + chr3_1:75173703-75173722 Msa0375420:intron 30.0%
TATCTGCTATCTGAACATTA+AGG + chr3_1:75173704-75173723 Msa0375420:intron 30.0%
TTTAGTCATCACTTACAAGA+TGG + chr3_1:75173739-75173758 Msa0375420:intron 30.0%
TTGAACATAAGAGAGGATTT+AGG - chr3_1:75173817-75173836 Msa0375430:intron 30.0%
! TGTTTGGATATTGACTGTAT+GGG + chr3_1:75173969-75173988 Msa0375420:intron 30.0%
! ATGTTTGGATATTGACTGTA+TGG + chr3_1:75173970-75173989 Msa0375420:intron 30.0%
!! TGCAAAAGTTAATTTGCCTT+AGG - chr3_1:75173989-75174008 Msa0375430:intron 30.0%
CACTATAGTGAATAAACCTA+AGG + chr3_1:75174008-75174027 Msa0375420:intron 30.0%
TAATCAACATTCAAAGAAGG+AGG + chr3_1:75174656-75174675 Msa0375420:three_prime_UTR 30.0%
AGGTAATCAACATTCAAAGA+AGG + chr3_1:75174659-75174678 Msa0375420:three_prime_UTR 30.0%
!!! CCAAACAATCATCGATTTTA+AGG + chr3_1:75174679-75174698 Msa0375420:three_prime_UTR 30.0%
CCTTAAAATCGATGATTGTT+TGG - chr3_1:75174676-75174695 Msa0375430:five_prime_UTR 30.0%
TACAATAGTAACTGGTTGTT+GGG + chr3_1:75174721-75174740 Msa0375420:three_prime_UTR 30.0%
!! TAACTCTCATTTCTGGTTCT+TGG - chr3_1:75171775-75171794 Msa0375430:three_prime_UTR 35.0%
! ACTTTTGTCCCACTAAAAAG+GGG + chr3_1:75171819-75171838 Msa0375420:three_prime_UTR 35.0%
!! CTACTTTTGTCCCACTAAAA+AGG + chr3_1:75171821-75171840 Msa0375420:three_prime_UTR 35.0%
!! TAGATTGTGAGGTTCTAAGA+AGG + chr3_1:75171891-75171910 Msa0375420:three_prime_UTR 35.0%
CTCTTCAACTCAATAGTTTG+TGG + chr3_1:75172031-75172050 Msa0375420:three_prime_UTR 35.0%
AAAAAGTAGCAACATGGCTT+TGG - chr3_1:75172059-75172078 Msa0375430:three_prime_UTR 35.0%
TCCATTGTTTCCAACTTCAA+GGG - chr3_1:75172125-75172144 Msa0375430:CDS 35.0%
AAAAACAGTTCACAAGGTAC+AGG + chr3_1:75172292-75172311 Msa0375420:three_prime_UTR 35.0%
TCTAGCCACAAACTATCTTA+AGG + chr3_1:75172648-75172667 Msa0375420:intron 35.0%
TGAACTTAATTTCCACAGCT+AGG - chr3_1:75172694-75172713 Msa0375430:intron 35.0%
GAACTTAATTTCCACAGCTA+GGG - chr3_1:75172695-75172714 Msa0375430:intron 35.0%
AACTTAATTTCCACAGCTAG+GGG - chr3_1:75172696-75172715 Msa0375430:intron 35.0%
CTTAGGAAGAATTCCTAAAC+AGG - chr3_1:75172720-75172739 Msa0375430:intron 35.0%
TTTGGGAGACCAAAGAAATA+GGG - chr3_1:75172833-75172852 Msa0375430:intron 35.0%
GAAGAAAGTAAGGGTAGAAA+AGG + chr3_1:75172952-75172971 Msa0375420:intron 35.0%
TCTCTGTTCACAACACTATA+GGG - chr3_1:75172998-75173017 Msa0375430:intron 35.0%
TATGTACCTAATGAGGAGAA+AGG - chr3_1:75173137-75173156 Msa0375430:intron 35.0%
GGAGAAAGGAGTGAATATAT+TGG - chr3_1:75173151-75173170 Msa0375430:intron 35.0%
! TTTTCCTTCATTCCTTTTCC+TGG - chr3_1:75173228-75173247 Msa0375430:intron 35.0%
GAGTATGAGAAGAGAGAAAT+TGG + chr3_1:75173632-75173651 Msa0375420:intron 35.0%
GAATACATTACAAGGAAACC+AGG + chr3_1:75173773-75173792 Msa0375420:intron 35.0%
TTGAGGATTGAACATAAGAG+AGG - chr3_1:75173810-75173829 Msa0375430:intron 35.0%
AGCACTTCTAAATGCATGTA+TGG - chr3_1:75173843-75173862 Msa0375430:intron 35.0%
AAGTAGGTTAGGCAGATTAA+CGG - chr3_1:75173873-75173892 Msa0375430:intron 35.0%
TAGAGCTTCAACACATTACA+AGG - chr3_1:75173925-75173944 Msa0375430:intron 35.0%
! TTTGGATATTGACTGTATGG+GGG + chr3_1:75173967-75173986 Msa0375420:intron 35.0%
! GTTTGGATATTGACTGTATG+GGG + chr3_1:75173968-75173987 Msa0375420:intron 35.0%
AACACATACATGCTCAAACT+TGG - chr3_1:75174047-75174066 Msa0375430:intron 35.0%
! TTGGCTAGCTCATCAATAAT+AGG + chr3_1:75174183-75174202 Msa0375420:intron 35.0%
CCAAACATAGCAACAAAGTA+CGG - chr3_1:75174252-75174271 Msa0375430:CDS 35.0%
AACACCAAAAATGGATGAAC+TGG - chr3_1:75174428-75174447 Msa0375430:exon 35.0%
ACACCAAAAATGGATGAACT+GGG - chr3_1:75174429-75174448 Msa0375430:exon 35.0%
! AATCCCAGTTCATCCATTTT+TGG + chr3_1:75174435-75174454 Msa0375420:three_prime_UTR 35.0%
CTACAATAGTAACTGGTTGT+TGG + chr3_1:75174722-75174741 Msa0375420:three_prime_UTR 35.0%
! TGATGTGTACCCCTTTTTAG+TGG - chr3_1:75171807-75171826 Msa0375430:three_prime_UTR 40.0%
!! GATGTGTACCCCTTTTTAGT+GGG - chr3_1:75171808-75171827 Msa0375430:three_prime_UTR 40.0%
TTAGTGGGACAAAAGTAGAG+AGG - chr3_1:75171823-75171842 Msa0375430:three_prime_UTR 40.0%
TAAGAAGGCTGGAATTCATG+TGG + chr3_1:75171876-75171895 Msa0375420:three_prime_UTR 40.0%
TGTGTGTATGTGTTTGCAAG+TGG + chr3_1:75171923-75171942 Msa0375420:three_prime_UTR 40.0%
ATAAGCTTCTAGTGTTGTGG+TGG + chr3_1:75171977-75171996 Msa0375420:three_prime_UTR 40.0%
TGGATAAGCTTCTAGTGTTG+TGG + chr3_1:75171980-75171999 Msa0375420:three_prime_UTR 40.0%
!! GTTAGGTTTTTCAGCACTTG+TGG + chr3_1:75172000-75172019 Msa0375420:three_prime_UTR 40.0%
! AGTTTGTGGAAAGTGCAGTT+AGG + chr3_1:75172017-75172036 Msa0375420:three_prime_UTR 40.0%
CTTGAAGTTGGAAACAATGG+AGG + chr3_1:75172126-75172145 Msa0375420:three_prime_UTR 40.0%
CTCCATTGTTTCCAACTTCA+AGG - chr3_1:75172124-75172143 Msa0375430:CDS 40.0%
TCCCTTGAAGTTGGAAACAA+TGG + chr3_1:75172129-75172148 Msa0375420:three_prime_UTR 40.0%
GTTTCCAACTTCAAGGGAAA+AGG - chr3_1:75172131-75172150 Msa0375430:CDS 40.0%
! ACAACCTTTTCCCTTGAAGT+TGG + chr3_1:75172138-75172157 Msa0375420:three_prime_UTR 40.0%
! GTTTTCTCAGCTCAAAGAGT+AGG - chr3_1:75172156-75172175 Msa0375430:CDS 40.0%
TCAACACTATCATTCCCATC+TGG - chr3_1:75172201-75172220 Msa0375430:CDS 40.0%
AACCACATCTCATCCAATGT+GGG + chr3_1:75172568-75172587 Msa0375420:intron 40.0%
AAACCACATCTCATCCAATG+TGG + chr3_1:75172569-75172588 Msa0375420:intron 40.0%
! TTGGTTCGCGAGAAATAAAG+AGG - chr3_1:75172761-75172780 Msa0375430:intron 40.0%
AATGTCACACTTCTCCTGTT+TGG - chr3_1:75172815-75172834 Msa0375430:intron 40.0%
ATGTCACACTTCTCCTGTTT+GGG - chr3_1:75172816-75172835 Msa0375430:intron 40.0%
ATTTCTTTGGTCTCCCAAAC+AGG + chr3_1:75172832-75172851 Msa0375420:intron 40.0%
GTTTGGGAGACCAAAGAAAT+AGG - chr3_1:75172832-75172851 Msa0375430:intron 40.0%
TTGGGAGACCAAAGAAATAG+GGG - chr3_1:75172834-75172853 Msa0375430:intron 40.0%
ATAGGGGAGAGAGACTTATT+CGG - chr3_1:75172850-75172869 Msa0375430:intron 40.0%
! GAGGAGAAGATAAAAAGCGT+GGG + chr3_1:75172883-75172902 Msa0375420:intron 40.0%
TGAGGAGAAGATAAAAAGCG+TGG + chr3_1:75172884-75172903 Msa0375420:intron 40.0%
TTTCTCTCGTCTTTCTTCTC+AGG + chr3_1:75172909-75172928 Msa0375420:intron 40.0%
CTCTCTGTTCACAACACTAT+AGG - chr3_1:75172997-75173016 Msa0375430:intron 40.0%
TTCACTCCTTTCTCCTCATT+AGG + chr3_1:75173146-75173165 Msa0375420:intron 40.0%
! CATGTATGGATTGACGAAGT+AGG - chr3_1:75173857-75173876 Msa0375430:intron 40.0%
! ATGGATTGACGAAGTAGGTT+AGG - chr3_1:75173862-75173881 Msa0375430:intron 40.0%
! ACGGTGTGTCAATGTGATTT+TGG - chr3_1:75173892-75173911 Msa0375430:intron 40.0%
TTGACTGTATGGGGGAATTA+TGG + chr3_1:75173959-75173978 Msa0375420:intron 40.0%
CCGTACTTTGTTGCTATGTT+TGG + chr3_1:75174255-75174274 Msa0375420:three_prime_UTR 40.0%
GTTGTAGACAGAGTAGACTT+TGG + chr3_1:75174348-75174367 Msa0375420:three_prime_UTR 40.0%
! AAACTACCTTTTGCCTTGCA+GGG + chr3_1:75174513-75174532 Msa0375420:three_prime_UTR 40.0%
!! TTGTGAGGTTCTAAGAAGGC+TGG + chr3_1:75171887-75171906 Msa0375420:three_prime_UTR 45.0%
AACAATGGAGGAAGACACTG+AGG + chr3_1:75172114-75172133 Msa0375420:three_prime_UTR 45.0%
TTCTGTAGGCAACACCAGAT+GGG + chr3_1:75172218-75172237 Msa0375420:three_prime_UTR 45.0%
TTTCTGTAGGCAACACCAGA+TGG + chr3_1:75172219-75172238 Msa0375420:three_prime_UTR 45.0%
GCTCGTGAAGCTGTAAATGA+AGG - chr3_1:75172258-75172277 Msa0375430:CDS 45.0%
CTCATCCAATGTGGGATTCT+TGG + chr3_1:75172560-75172579 Msa0375420:intron 45.0%
ATCCCACATTGGATGAGATG+TGG - chr3_1:75172563-75172582 Msa0375430:intron 45.0%
! GTCTCTCTCCCCTATTTCTT+TGG + chr3_1:75172845-75172864 Msa0375420:intron 45.0%
CGTCTTTCTTCTCAGGTATG+AGG + chr3_1:75172902-75172921 Msa0375420:intron 45.0%
!! TTTGGTGCTTGAGACTTGAG+AGG - chr3_1:75173049-75173068 Msa0375430:intron 45.0%
! AACGAGTGAGTTGAGGAAGT+AGG - chr3_1:75173080-75173099 Msa0375430:intron 45.0%
! ACGAGTGAGTTGAGGAAGTA+GGG - chr3_1:75173081-75173100 Msa0375430:intron 45.0%
! ATATATTGGTGTGTCGGCGA+TGG - chr3_1:75173184-75173203 Msa0375430:intron 45.0%
CGAACCAGGAAAAGGAATGA+AGG + chr3_1:75173235-75173254 Msa0375420:intron 45.0%
!! CTTTTCCTGGTTCGCTGAAT+CGG - chr3_1:75173241-75173260 Msa0375430:intron 45.0%
! CTGAACATTAAGGGTGCGTT+TGG + chr3_1:75173694-75173713 Msa0375420:intron 45.0%
GACTAAACATGCTTGCTTCC+TGG - chr3_1:75173752-75173771 Msa0375430:intron 45.0%
ACATGCTCAAACTTGGCAGT+TGG - chr3_1:75174054-75174073 Msa0375430:intron 45.0%
GGGTTTCACTTGCAAGAACA+AGG + chr3_1:75174107-75174126 Msa0375420:intron 45.0%
CCAAAAATCTACCAGCACAG+GGG + chr3_1:75174127-75174146 Msa0375420:intron 45.0%
CCCAAAAATCTACCAGCACA+GGG + chr3_1:75174128-75174147 Msa0375420:intron 45.0%
!! CCCTGTGCTGGTAGATTTTT+GGG - chr3_1:75174125-75174144 Msa0375430:intron 45.0%
!! TGGTAGATTTTTGGGCACCA+TGG - chr3_1:75174133-75174152 Msa0375430:intron 45.0%
GAGCTAGCCAAAGAATATGC+TGG - chr3_1:75174192-75174211 Msa0375430:intron 45.0%
GTCTACTCTGTCTACAACTG+TGG - chr3_1:75174350-75174369 Msa0375430:CDS 45.0%
TGCAGGGCATGGAAAAGAAT+GGG + chr3_1:75174497-75174516 Msa0375420:three_prime_UTR 45.0%
TTGCAGGGCATGGAAAAGAA+TGG + chr3_1:75174498-75174517 Msa0375420:three_prime_UTR 45.0%
! ATTCTTTTCCATGCCCTGCA+AGG - chr3_1:75174497-75174516 Msa0375430:five_prime_UTR 45.0%
! CAAACTACCTTTTGCCTTGC+AGG + chr3_1:75174514-75174533 Msa0375420:three_prime_UTR 45.0%
!!! TAAATATTTTAATTTTTTGA+AGG + chr3_1:75173394-75173413 Msa0375420:intron 5.0%
GAAGGCTGGAATTCATGTGG+TGG + chr3_1:75171873-75171892 Msa0375420:three_prime_UTR 50.0%
CATCTCAAGCGTGACTTGAG+TGG + chr3_1:75172521-75172540 Msa0375420:intron 50.0%
GTGTGCCAAGAATCCCACAT+TGG - chr3_1:75172552-75172571 Msa0375430:intron 50.0%
TTTCCACAGCTAGGGGACTT+AGG - chr3_1:75172703-75172722 Msa0375430:intron 50.0%
GAGAGAGACTTATTCGGCGT+GGG - chr3_1:75172856-75172875 Msa0375430:intron 50.0%
GTGCTTGAGACTTGAGAGGT+GGG - chr3_1:75173053-75173072 Msa0375430:intron 50.0%
! CGAGTGAGTTGAGGAAGTAG+GGG - chr3_1:75173082-75173101 Msa0375430:intron 50.0%
! TGAGTTGAGGAAGTAGGGGT+GGG - chr3_1:75173086-75173105 Msa0375430:intron 50.0%
CGATTCAGCGAACCAGGAAA+AGG + chr3_1:75173243-75173262 Msa0375420:intron 50.0%
!! CCCCTGTGCTGGTAGATTTT+TGG - chr3_1:75174124-75174143 Msa0375430:intron 50.0%
GCCCAAAAATCTACCAGCAC+AGG + chr3_1:75174129-75174148 Msa0375420:intron 50.0%
!! GATTTTTGGGCACCATGGTG+TGG - chr3_1:75174138-75174157 Msa0375430:intron 50.0%
ATAGGCGCTATCATCCTGCA+TGG + chr3_1:75174165-75174184 Msa0375420:intron 50.0%
AAGACACTGAGGTCTGGCTG+TGG + chr3_1:75172103-75172122 Msa0375420:three_prime_UTR 55.0%
TGGAGGAAGACACTGAGGTC+TGG + chr3_1:75172109-75172128 Msa0375420:three_prime_UTR 55.0%
GTGGGATTCTTGGCACACAC+AGG + chr3_1:75172550-75172569 Msa0375420:intron 55.0%
CTTCCTAAGTCCCCTAGCTG+TGG + chr3_1:75172709-75172728 Msa0375420:intron 55.0%
GGAGAGAGACTTATTCGGCG+TGG - chr3_1:75172855-75172874 Msa0375430:intron 55.0%
GGTGCTTGAGACTTGAGAGG+TGG - chr3_1:75173052-75173071 Msa0375430:intron 55.0%
GGGCATGAACGAGTGAGTTG+AGG - chr3_1:75173073-75173092 Msa0375430:intron 55.0%
! GTGAGTTGAGGAAGTAGGGG+TGG - chr3_1:75173085-75173104 Msa0375430:intron 55.0%
! GAGCAGTGACTGACTCAAGC+TGG - chr3_1:75174076-75174095 Msa0375430:intron 55.0%
TGCAAGTGAAACCCCTGTGC+TGG - chr3_1:75174113-75174132 Msa0375430:intron 55.0%
ATCCTGCATGGACCACACCA+TGG + chr3_1:75174153-75174172 Msa0375420:intron 55.0%
TCCATGCCCTGCAAGGCAAA+AGG - chr3_1:75174504-75174523 Msa0375430:five_prime_UTR 55.0%
! ACCTTTTGCCTTGCAGGGCA+TGG + chr3_1:75174508-75174527 Msa0375420:three_prime_UTR 55.0%
!! GAGCACCGATTCAGCGAACC+AGG + chr3_1:75173249-75173268 Msa0375420:intron 60.0%
CACCATGGTGTGGTCCATGC+AGG - chr3_1:75174148-75174167 Msa0375430:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 75171770 75174741 75171770 ID=Msa0375430;Name=Msa0375430
chr3_1 mRNA 75171770 75174741 75171770 ID=Msa0375430-mRNA-1;Parent=Msa0375430;Name=Msa0375430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=302|1|1|1|1|1|2|349|175
chr3_1 exon 75171770 75172438 75171770 ID=Msa0375430-mRNA-1:exon:17577;Parent=Msa0375430-mRNA-1
chr3_1 exon 75174232 75174741 75174232 ID=Msa0375430-mRNA-1:exon:17576;Parent=Msa0375430-mRNA-1
chr3_1 five_prime_UTR 75174440 75174741 75174440 ID=Msa0375430-mRNA-1:five_prime_utr;Parent=Msa0375430-mRNA-1
chr3_1 CDS 75174232 75174439 75174232 ID=Msa0375430-mRNA-1:cds;Parent=Msa0375430-mRNA-1
chr3_1 CDS 75172119 75172438 75172119 ID=Msa0375430-mRNA-1:cds;Parent=Msa0375430-mRNA-1
chr3_1 three_prime_UTR 75171770 75172118 75171770 ID=Msa0375430-mRNA-1:three_prime_utr;Parent=Msa0375430-mRNA-1
Gene Sequence

>Msa0375430

ATGGCTTTGGAGAATTGTTTAAGAGTATCCACAGCCAGACCTCAGTGTCTTCCTCCATTGTTTCCAACTTCAAGGGAAAAGGTTGTTTTCTCAGCTCAAAGAGTAGGTTTCAAGAAATCTGTGCTGAACTCAACACTATCATTCCCATCTGGTGTTGCCTACAGAAAATCTCGTTTTATTTGCAATGCTCGTGAAGCTGTAAATGAAGTTGGAGCAGTGACTGACTCAAGCTGGAATGACCTTGTTCTTGCAAGTGAAACCCCTGTGCTGGTAGATTTTTGGGCACCATGGTGTGGTCCATGCAGGATGATAGCGCCTATTATTGATGAGCTAGCCAAAGAATATGCTGGAAAAATTTCGTGCTACAAGCTCAACACAGATGAGAATCCAAACATAGCAACAAAGTACGGCATCAGAAGCATACCAACTGTTCTATTTTTCAAGAATGGAGAGAAAAAAGAAAGTGTAATTGGTGCAGTTCCAAAGTCTACTCTGTCTACAACTGTGGAAAAATATATTGATGCATGA

Protein sequence

>Msa0375430

MALENCLRVSTARPQCLPPLFPTSREKVVFSAQRVGFKKSVLNSTLSFPSGVAYRKSRFICNAREAVNEVGAVTDSSWNDLVLASETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKISCYKLNTDENPNIATKYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSTTVEKYIDA*