AlfalfaGEDB | MS.gene98461

M. sativa cultivar XinJiangDaYe / MS.gene98461

KEGG: K14823
GO: -
PFAM: PF05890.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98461.t1	XP_003612737.2	97.9	289	6	0	1	289	1	289	5.80E-106	394

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98461.t1	Q9LUJ5	56.2	258	106	4	35	290	41	293	7.1e-44	179.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98461.t1	G7KAW7	97.9	289	6	0	1	289	1	289	4.2e-106	394.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene98461	0.805782	1.13E-49	-1.69E-46
MS.gene049825	MS.gene98461	0.802105	6.57E-49	-1.69E-46
MS.gene051003	MS.gene98461	0.80377	2.97E-49	-1.69E-46
MS.gene051363	MS.gene98461	0.815989	6.97E-52	-1.69E-46
MS.gene051848	MS.gene98461	-0.808712	2.71E-50	-1.69E-46
MS.gene05188	MS.gene98461	0.845253	4.56E-59	-1.69E-46
MS.gene051975	MS.gene98461	0.837964	3.81E-57	-1.69E-46
MS.gene052582	MS.gene98461	0.804018	2.64E-49	-1.69E-46
MS.gene052584	MS.gene98461	0.811927	5.48E-51	-1.69E-46
MS.gene053058	MS.gene98461	0.820138	8.04E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene003435	MS.gene98461	PPI
MS.gene012331	MS.gene98461	PPI
MS.gene012333	MS.gene98461	PPI
MS.gene018553	MS.gene98461	PPI
MS.gene029547	MS.gene98461	PPI
MS.gene031378	MS.gene98461	PPI
MS.gene039132	MS.gene98461	PPI
MS.gene040601	MS.gene98461	PPI
MS.gene047421	MS.gene98461	PPI
MS.gene058018	MS.gene98461	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98461.t1	MTR_5g028350	97.232	289	8	0	1	289	1	289	0.0	566
MS.gene98461.t1	MTR_8g075400	76.552	290	37	4	1	289	14	273	3.53e-138	391
MS.gene98461.t1	MTR_8g075400	87.500	224	26	1	1	224	1	222	7.17e-129	367

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98461.t1	AT3G22660	65.188	293	87	6	2	290	12	293	1.91e-126	362

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Find 70 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGGTGATCCAATGATTGA+CGG	0.554237	5.4:-18907252	MS.gene98461:CDS
AAGAATGCCAAATTTGGTTT+TGG	0.274042	5.4:-18906523	MS.gene98461:CDS
AAGAGGCCCGGAGTATCTCC+AGG	0.558097	5.4:-18906616	MS.gene98461:CDS
AAGTCTTTGAGCTTTGAGGA+TGG	0.576787	5.4:-18906664	MS.gene98461:CDS
ACATGGAAAAGGTGAAAAGT+CGG	0.619320	5.4:-18906885	MS.gene98461:CDS
ACATTGAATCTGTTAAGAAG+TGG	0.600860	5.4:-18906738	MS.gene98461:CDS
AGAAAGGGCCAAGCAGAAAA+AGG	0.351345	5.4:-18906764	MS.gene98461:CDS
AGACAATCTCTTTGCTTCCC+TGG	0.401049	5.4:+18906813	None:intergenic
AGATAAGTCTTTGAGCTTTG+AGG	0.404345	5.4:-18906668	MS.gene98461:CDS
AGATGAGAAGCGGAAGATGG+AGG	0.539024	5.4:-18906857	MS.gene98461:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATTGAATCTGTTAAGAAG+TGG	-	chr5.4:18906952-18906971	MS.gene98461:CDS	30.0%
AGTCACAGAAATTGAAAGAA+AGG	-	chr5.4:18906910-18906929	MS.gene98461:CDS	30.0%
GATACTAAGAATGCCAAATT+TGG	-	chr5.4:18907161-18907180	MS.gene98461:CDS	30.0%
GTCACAGAAATTGAAAGAAA+GGG	-	chr5.4:18906911-18906930	MS.gene98461:CDS	30.0%
TCTCCATTGATATTGATCAA+GGG	-	chr5.4:18906625-18906644	MS.gene98461:CDS	30.0%
TCTTCTGAATCTGATTCAAA+CGG	+	chr5.4:18906495-18906514	None:intergenic	30.0%
ACATGGAAAAGGTGAAAAGT+CGG	-	chr5.4:18906805-18906824	MS.gene98461:CDS	35.0%
AGATAAGTCTTTGAGCTTTG+AGG	-	chr5.4:18907022-18907041	MS.gene98461:CDS	35.0%
AGCAAAGAGATTGTCTAAAG+AGG	-	chr5.4:18906884-18906903	MS.gene98461:CDS	35.0%
ATAAACTAGGAGACATAAGC+TGG	-	chr5.4:18906574-18906593	MS.gene98461:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	18906420	18907292	18906420	ID=MS.gene98461
chr5.4	mRNA	18906420	18907292	18906420	ID=MS.gene98461.t1;Parent=MS.gene98461
chr5.4	exon	18906420	18907292	18906420	ID=MS.gene98461.t1.exon1;Parent=MS.gene98461.t1
chr5.4	CDS	18906420	18907292	18906420	ID=cds.MS.gene98461.t1;Parent=MS.gene98461.t1

Gene Sequence

>MS.gene98461

ATGGAGGTGTCTTTGGTTAACGGTGATCCAATGATTGACGGTGAAACTGAAGATTTGGATGAGGAAATGTCACCGTTTGAATCAGATTCAGAAGAAGATGTCAAATTAGCTGAACCATCTAAAACTGCAGTGAATAACAGAGATGCTATATTAGATAAACTAGGAGACATAAGCTGGCCTGAGAATGTGGATTGGAAGCACAAACTCTCCATTGATATTGATCAAGGGGAGGAAGTAGATGTGAACGATGACTTGGCACGTGAGCTATCATTTTACACGCAGGCATTGGAGGGAACTAGACAGGCCTTTGAGAAGCTTGAGTCGATGGGTCTCCCTTTCTTGAGACCTGCTGACTATTACGCAGAAATGGTGAAGGGAGATAGCCACATGGAAAAGGTGAAAAGTCGGCTATTAGATGAGAAGCGGAAGATGGAGGAGGCTGAAGAGAGAAGAAAGGCCAGGGAAGCAAAGAGATTGTCTAAAGAGGTTCAGTCACAGAAATTGAAAGAAAGGGCCAAGCAGAAAAAGGATGACATTGAATCTGTTAAGAAGTGGAGGAAGCAGAGACAACAGAGTGGGTTTGCTGACGGCGCCGATGCTCCAGATAAGTCTTTGAGCTTTGAGGATGGAAAAGTGTTCGAGAGATCAAAGAAAAAGAGGCCCGGAGTATCTCCAGGAGATCGGTCAGGAGGTAAGGCAAAGCAAGCTATGGGAAAGGGAAAGAAGCCGCAAAAGAAAAGAGATACTAAGAATGCCAAATTTGGTTTTGGAGGCCGGAAGGGATCGAAGAAGCAGAATACAGCTGAAACAACTAATGATTTTGGTGGGTTCAGTAAGGGTTCTGCTGCTGGAAATAAGAAGAGAAAGAGATAA

Protein sequence

>MS.gene98461.t1

MEVSLVNGDPMIDGETEDLDEEMSPFESDSEEDVKLAEPSKTAVNNRDAILDKLGDISWPENVDWKHKLSIDIDQGEEVDVNDDLARELSFYTQALEGTRQAFEKLESMGLPFLRPADYYAEMVKGDSHMEKVKSRLLDEKRKMEEAEERRKAREAKRLSKEVQSQKLKERAKQKKDDIESVKKWRKQRQQSGFADGADAPDKSLSFEDGKVFERSKKKRPGVSPGDRSGGKAKQAMGKGKKPQKKRDTKNAKFGFGGRKGSKKQNTAETTNDFGGFSKGSAAGNKKRKR