Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93192.t1 | XP_003589598.2 | 99.1 | 531 | 5 | 0 | 72 | 602 | 1 | 531 | 0.00E+00 | 1094.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93192.t1 | Q9MBA1 | 75.4 | 532 | 124 | 2 | 74 | 598 | 4 | 535 | 1.3e-246 | 853.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93192.t1 | G7I8G8 | 99.1 | 531 | 5 | 0 | 72 | 602 | 1 | 531 | 0.0e+00 | 1094.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene93192 | 0.842363 | 2.71E-58 | -1.69E-46 |
| MS.gene049173 | MS.gene93192 | 0.804343 | 2.26E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene93192 | 0.810887 | 9.22E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene93192 | 0.857564 | 1.50E-62 | -1.69E-46 |
| MS.gene049232 | MS.gene93192 | 0.888284 | 6.77E-73 | -1.69E-46 |
| MS.gene049259 | MS.gene93192 | -0.814099 | 1.83E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene93192 | 0.878388 | 2.93E-69 | -1.69E-46 |
| MS.gene049320 | MS.gene93192 | 0.900772 | 5.24E-78 | -1.69E-46 |
| MS.gene04939 | MS.gene93192 | 0.812559 | 3.99E-51 | -1.69E-46 |
| MS.gene049600 | MS.gene93192 | 0.868692 | 5.41E-66 | -1.69E-46 |
| MS.gene049609 | MS.gene93192 | 0.800295 | 1.54E-48 | -1.69E-46 |
| MS.gene049633 | MS.gene93192 | 0.863919 | 1.76E-64 | -1.69E-46 |
| MS.gene04986 | MS.gene93192 | -0.82202 | 2.96E-53 | -1.69E-46 |
| MS.gene050082 | MS.gene93192 | -0.811481 | 6.85E-51 | -1.69E-46 |
| MS.gene05010 | MS.gene93192 | 0.86421 | 1.43E-64 | -1.69E-46 |
| MS.gene050163 | MS.gene93192 | 0.867824 | 1.03E-65 | -1.69E-46 |
| MS.gene050165 | MS.gene93192 | 0.881132 | 3.09E-70 | -1.69E-46 |
| MS.gene050170 | MS.gene93192 | 0.865788 | 4.58E-65 | -1.69E-46 |
| MS.gene050216 | MS.gene93192 | 0.849957 | 2.32E-60 | -1.69E-46 |
| MS.gene050323 | MS.gene93192 | 0.897514 | 1.31E-76 | -1.69E-46 |
| MS.gene050333 | MS.gene93192 | 0.871954 | 4.61E-67 | -1.69E-46 |
| MS.gene050338 | MS.gene93192 | -0.811606 | 6.44E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene93192 | 0.813791 | 2.14E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene93192 | 0.893436 | 6.30E-75 | -1.69E-46 |
| MS.gene050504 | MS.gene93192 | 0.898509 | 4.95E-77 | -1.69E-46 |
| MS.gene050518 | MS.gene93192 | 0.890353 | 1.06E-73 | -1.69E-46 |
| MS.gene050577 | MS.gene93192 | 0.86244 | 5.06E-64 | -1.69E-46 |
| MS.gene050612 | MS.gene93192 | 0.914694 | 1.42E-84 | -1.69E-46 |
| MS.gene050662 | MS.gene93192 | 0.818112 | 2.32E-52 | -1.69E-46 |
| MS.gene050675 | MS.gene93192 | 0.875041 | 4.21E-68 | -1.69E-46 |
| MS.gene050697 | MS.gene93192 | 0.836437 | 9.36E-57 | -1.69E-46 |
| MS.gene050699 | MS.gene93192 | 0.860553 | 1.91E-63 | -1.69E-46 |
| MS.gene050772 | MS.gene93192 | 0.84773 | 9.61E-60 | -1.69E-46 |
| MS.gene05080 | MS.gene93192 | 0.845912 | 3.02E-59 | -1.69E-46 |
| MS.gene050868 | MS.gene93192 | 0.867709 | 1.12E-65 | -1.69E-46 |
| MS.gene050871 | MS.gene93192 | 0.867731 | 1.10E-65 | -1.69E-46 |
| MS.gene050876 | MS.gene93192 | 0.895363 | 1.03E-75 | -1.69E-46 |
| MS.gene050904 | MS.gene93192 | 0.862771 | 4.00E-64 | -1.69E-46 |
| MS.gene050986 | MS.gene93192 | 0.904267 | 1.47E-79 | -1.69E-46 |
| MS.gene05100 | MS.gene93192 | 0.824071 | 9.84E-54 | -1.69E-46 |
| MS.gene051138 | MS.gene93192 | -0.807896 | 4.04E-50 | -1.69E-46 |
| MS.gene05118 | MS.gene93192 | 0.829375 | 5.33E-55 | -1.69E-46 |
| MS.gene051268 | MS.gene93192 | 0.845548 | 3.79E-59 | -1.69E-46 |
| MS.gene051317 | MS.gene93192 | 0.869038 | 4.18E-66 | -1.69E-46 |
| MS.gene051509 | MS.gene93192 | 0.848146 | 7.38E-60 | -1.69E-46 |
| MS.gene051551 | MS.gene93192 | 0.857063 | 2.11E-62 | -1.69E-46 |
| MS.gene051651 | MS.gene93192 | -0.821787 | 3.35E-53 | -1.69E-46 |
| MS.gene051810 | MS.gene93192 | 0.843684 | 1.20E-58 | -1.69E-46 |
| MS.gene051949 | MS.gene93192 | 0.817854 | 2.66E-52 | -1.69E-46 |
| MS.gene052164 | MS.gene93192 | 0.867271 | 1.55E-65 | -1.69E-46 |
| MS.gene052482 | MS.gene93192 | 0.848349 | 6.49E-60 | -1.69E-46 |
| MS.gene052486 | MS.gene93192 | 0.855476 | 6.15E-62 | -1.69E-46 |
| MS.gene052506 | MS.gene93192 | 0.80981 | 1.57E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene93192 | 0.804733 | 1.87E-49 | -1.69E-46 |
| MS.gene052822 | MS.gene93192 | 0.830886 | 2.28E-55 | -1.69E-46 |
| MS.gene052916 | MS.gene93192 | 0.86398 | 1.69E-64 | -1.69E-46 |
| MS.gene052966 | MS.gene93192 | 0.842638 | 2.29E-58 | -1.69E-46 |
| MS.gene053203 | MS.gene93192 | 0.835388 | 1.73E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene93192 | 0.838641 | 2.55E-57 | -1.69E-46 |
| MS.gene053286 | MS.gene93192 | 0.846717 | 1.82E-59 | -1.69E-46 |
| MS.gene053420 | MS.gene93192 | -0.816396 | 5.65E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene93192 | 0.834802 | 2.43E-56 | -1.69E-46 |
| MS.gene053626 | MS.gene93192 | 0.832764 | 7.85E-56 | -1.69E-46 |
| MS.gene053632 | MS.gene93192 | 0.811598 | 6.46E-51 | -1.69E-46 |
| MS.gene053633 | MS.gene93192 | 0.840274 | 9.59E-58 | -1.69E-46 |
| MS.gene053824 | MS.gene93192 | 0.817837 | 2.68E-52 | -1.69E-46 |
| MS.gene053916 | MS.gene93192 | 0.832838 | 7.52E-56 | -1.69E-46 |
| MS.gene054056 | MS.gene93192 | -0.809082 | 2.26E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene93192 | 0.836611 | 8.46E-57 | -1.69E-46 |
| MS.gene054600 | MS.gene93192 | 0.813593 | 2.37E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene93192 | 0.857858 | 1.23E-62 | -1.69E-46 |
| MS.gene05470 | MS.gene93192 | 0.865431 | 5.94E-65 | -1.69E-46 |
| MS.gene054954 | MS.gene93192 | 0.911206 | 7.90E-83 | -1.69E-46 |
| MS.gene055154 | MS.gene93192 | -0.801651 | 8.14E-49 | -1.69E-46 |
| MS.gene055251 | MS.gene93192 | -0.820868 | 5.46E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene93192 | 0.881714 | 1.91E-70 | -1.69E-46 |
| MS.gene055502 | MS.gene93192 | 0.852328 | 4.96E-61 | -1.69E-46 |
| MS.gene055577 | MS.gene93192 | 0.83776 | 4.30E-57 | -1.69E-46 |
| MS.gene055634 | MS.gene93192 | 0.829271 | 5.65E-55 | -1.69E-46 |
| MS.gene055722 | MS.gene93192 | 0.824077 | 9.82E-54 | -1.69E-46 |
| MS.gene055748 | MS.gene93192 | 0.898791 | 3.75E-77 | -1.69E-46 |
| MS.gene055750 | MS.gene93192 | 0.911188 | 8.06E-83 | -1.69E-46 |
| MS.gene055751 | MS.gene93192 | 0.921285 | 4.35E-88 | -1.69E-46 |
| MS.gene055776 | MS.gene93192 | 0.944394 | 2.12E-103 | -1.69E-46 |
| MS.gene055849 | MS.gene93192 | 0.862811 | 3.89E-64 | -1.69E-46 |
| MS.gene05589 | MS.gene93192 | 0.890436 | 9.87E-74 | -1.69E-46 |
| MS.gene055942 | MS.gene93192 | -0.84645 | 2.16E-59 | -1.69E-46 |
| MS.gene056046 | MS.gene93192 | 0.845348 | 4.30E-59 | -1.69E-46 |
| MS.gene056283 | MS.gene93192 | 0.808626 | 2.82E-50 | -1.69E-46 |
| MS.gene056374 | MS.gene93192 | 0.814941 | 1.19E-51 | -1.69E-46 |
| MS.gene056387 | MS.gene93192 | 0.833286 | 5.82E-56 | -1.69E-46 |
| MS.gene056446 | MS.gene93192 | 0.809033 | 2.31E-50 | -1.69E-46 |
| MS.gene056450 | MS.gene93192 | 0.810089 | 1.37E-50 | -1.69E-46 |
| MS.gene056487 | MS.gene93192 | 0.80918 | 2.15E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene93192 | 0.919974 | 2.30E-87 | -1.69E-46 |
| MS.gene056510 | MS.gene93192 | 0.89933 | 2.20E-77 | -1.69E-46 |
| MS.gene056549 | MS.gene93192 | 0.824243 | 8.97E-54 | -1.69E-46 |
| MS.gene056657 | MS.gene93192 | 0.897102 | 1.95E-76 | -1.69E-46 |
| MS.gene056692 | MS.gene93192 | 0.827386 | 1.61E-54 | -1.69E-46 |
| MS.gene05753 | MS.gene93192 | 0.83922 | 1.80E-57 | -1.69E-46 |
| MS.gene057687 | MS.gene93192 | 0.83283 | 7.56E-56 | -1.69E-46 |
| MS.gene057831 | MS.gene93192 | 0.826637 | 2.43E-54 | -1.69E-46 |
| MS.gene057872 | MS.gene93192 | 0.848848 | 4.72E-60 | -1.69E-46 |
| MS.gene05787 | MS.gene93192 | 0.818944 | 1.51E-52 | -1.69E-46 |
| MS.gene058171 | MS.gene93192 | -0.807544 | 4.80E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene93192 | -0.808965 | 2.39E-50 | -1.69E-46 |
| MS.gene058268 | MS.gene93192 | -0.814628 | 1.40E-51 | -1.69E-46 |
| MS.gene058269 | MS.gene93192 | -0.814364 | 1.60E-51 | -1.69E-46 |
| MS.gene058334 | MS.gene93192 | -0.851874 | 6.68E-61 | -1.69E-46 |
| MS.gene05837 | MS.gene93192 | 0.803368 | 3.60E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene93192 | 0.869707 | 2.53E-66 | -1.69E-46 |
| MS.gene058719 | MS.gene93192 | 0.83348 | 5.21E-56 | -1.69E-46 |
| MS.gene058723 | MS.gene93192 | 0.837089 | 6.38E-57 | -1.69E-46 |
| MS.gene058773 | MS.gene93192 | 0.856065 | 4.14E-62 | -1.69E-46 |
| MS.gene058838 | MS.gene93192 | 0.817469 | 3.24E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene93192 | 0.897941 | 8.62E-77 | -1.69E-46 |
| MS.gene059023 | MS.gene93192 | 0.810394 | 1.18E-50 | -1.69E-46 |
| MS.gene059045 | MS.gene93192 | -0.810525 | 1.10E-50 | -1.69E-46 |
| MS.gene059079 | MS.gene93192 | 0.828862 | 7.10E-55 | -1.69E-46 |
| MS.gene05913 | MS.gene93192 | 0.850641 | 1.49E-60 | -1.69E-46 |
| MS.gene059367 | MS.gene93192 | 0.836596 | 8.53E-57 | -1.69E-46 |
| MS.gene059667 | MS.gene93192 | 0.820202 | 7.77E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene93192 | 0.8817 | 1.93E-70 | -1.69E-46 |
| MS.gene059699 | MS.gene93192 | -0.809788 | 1.59E-50 | -1.69E-46 |
| MS.gene059701 | MS.gene93192 | -0.818347 | 2.06E-52 | -1.69E-46 |
| MS.gene059703 | MS.gene93192 | -0.827268 | 1.72E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene93192 | 0.852977 | 3.24E-61 | -1.69E-46 |
| MS.gene059756 | MS.gene93192 | 0.813126 | 3.00E-51 | -1.69E-46 |
| MS.gene059837 | MS.gene93192 | 0.832112 | 1.14E-55 | -1.69E-46 |
| MS.gene059865 | MS.gene93192 | 0.935964 | 3.69E-97 | -1.69E-46 |
| MS.gene06000 | MS.gene93192 | 0.856355 | 3.40E-62 | -1.69E-46 |
| MS.gene060295 | MS.gene93192 | 0.806793 | 6.92E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene93192 | 0.809782 | 1.60E-50 | -1.69E-46 |
| MS.gene060526 | MS.gene93192 | 0.833845 | 4.22E-56 | -1.69E-46 |
| MS.gene060595 | MS.gene93192 | -0.821722 | 3.47E-53 | -1.69E-46 |
| MS.gene060703 | MS.gene93192 | 0.879412 | 1.27E-69 | -1.69E-46 |
| MS.gene060762 | MS.gene93192 | 0.883748 | 3.45E-71 | -1.69E-46 |
| MS.gene060778 | MS.gene93192 | 0.892661 | 1.29E-74 | -1.69E-46 |
| MS.gene06077 | MS.gene93192 | 0.878348 | 3.02E-69 | -1.69E-46 |
| MS.gene060823 | MS.gene93192 | -0.815668 | 8.22E-52 | -1.69E-46 |
| MS.gene060929 | MS.gene93192 | -0.800552 | 1.37E-48 | -1.69E-46 |
| MS.gene06097 | MS.gene93192 | 0.820409 | 6.96E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene93192 | 0.911031 | 9.63E-83 | -1.69E-46 |
| MS.gene061044 | MS.gene93192 | -0.814844 | 1.25E-51 | -1.69E-46 |
| MS.gene061134 | MS.gene93192 | 0.815373 | 9.56E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene93192 | 0.814039 | 1.89E-51 | -1.69E-46 |
| MS.gene061218 | MS.gene93192 | 0.821584 | 3.74E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93192.t1 | MTR_1g030480 | 99.058 | 531 | 5 | 0 | 72 | 602 | 1 | 531 | 0.0 | 1101 |
| MS.gene93192.t1 | MTR_3g105820 | 25.926 | 351 | 211 | 15 | 281 | 602 | 99 | 429 | 8.98e-26 | 112 |
| MS.gene93192.t1 | MTR_8g085790 | 24.370 | 357 | 186 | 20 | 284 | 584 | 61 | 389 | 4.27e-14 | 75.5 |
| MS.gene93192.t1 | MTR_8g085840 | 21.448 | 359 | 211 | 14 | 284 | 592 | 85 | 422 | 1.50e-13 | 73.9 |
| MS.gene93192.t1 | MTR_8g085820 | 21.849 | 357 | 196 | 17 | 284 | 584 | 61 | 390 | 3.36e-12 | 69.7 |
| MS.gene93192.t1 | MTR_4g057200 | 25.862 | 174 | 109 | 6 | 281 | 435 | 93 | 265 | 7.70e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93192.t1 | AT1G44446 | 75.376 | 532 | 124 | 2 | 74 | 598 | 4 | 535 | 0.0 | 834 |
| MS.gene93192.t1 | AT1G44446 | 75.417 | 480 | 111 | 2 | 74 | 546 | 4 | 483 | 0.0 | 745 |
| MS.gene93192.t1 | AT1G44446 | 78.060 | 433 | 95 | 0 | 166 | 598 | 1 | 433 | 0.0 | 719 |
| MS.gene93192.t1 | AT1G44446 | 72.324 | 383 | 99 | 2 | 74 | 449 | 4 | 386 | 0.0 | 559 |
| MS.gene93192.t1 | AT2G24820 | 23.650 | 389 | 244 | 13 | 231 | 591 | 45 | 408 | 5.94e-25 | 109 |
| MS.gene93192.t1 | AT3G44880 | 26.432 | 227 | 140 | 9 | 281 | 483 | 85 | 308 | 1.47e-11 | 67.8 |
Find 156 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTCTCTGCTGACTTAA+AGG | 0.172252 | 1.3:-15916475 | MS.gene93192:CDS |
| ATCCTAATTTAAAGAATTTC+TGG | 0.191900 | 1.3:-15916506 | MS.gene93192:CDS |
| AGGAACCATGGGTTATCTTT+AGG | 0.213560 | 1.3:-15916273 | MS.gene93192:CDS |
| CAGGGTTTGAAAGGTAAATT+TGG | 0.219218 | 1.3:-15917636 | MS.gene93192:CDS |
| GCTTTGTCCTTTCAATTTCC+CGG | 0.258774 | 1.3:+15914913 | None:intergenic |
| CTCCATAGATGTTCCATAAA+AGG | 0.264680 | 1.3:+15914773 | None:intergenic |
| CAGGTGTGTTGAACATTCTT+TGG | 0.268435 | 1.3:+15914889 | None:intergenic |
| TACCAGAAATTCTTTAAATT+AGG | 0.270588 | 1.3:+15916504 | None:intergenic |
| GTCCAATGGCTTTGGTGGTT+TGG | 0.279104 | 1.3:+15923656 | None:intergenic |
| GGTTGAACACGGATTACTTT+TGG | 0.283837 | 1.3:-15915666 | MS.gene93192:CDS |
| CATCTGGTCTGCAAGGATAT+TGG | 0.286825 | 1.3:-15915006 | MS.gene93192:CDS |
| CTTTATTCATTCTCTCTTGT+TGG | 0.291005 | 1.3:+15914203 | None:intergenic |
| CCTTCTTTACTACCTCCTTC+TGG | 0.291205 | 1.3:-15915858 | MS.gene93192:CDS |
| CTTAGTGGCGCTTTAGATCT+TGG | 0.291618 | 1.3:+15917546 | None:intergenic |
| GGAACCATGGGTTATCTTTA+GGG | 0.299759 | 1.3:-15916272 | MS.gene93192:CDS |
| GTCGATTGGCACCATGAAAA+AGG | 0.314224 | 1.3:-15916879 | MS.gene93192:CDS |
| TTGTTGCGAATTCGGATTAT+TGG | 0.317469 | 1.3:+15923715 | None:intergenic |
| ATGTTGGTCTTAGCAGGTTT+TGG | 0.319654 | 1.3:-15923743 | MS.gene93192:CDS |
| TGGGGACTGTCCAATGGCTT+TGG | 0.320371 | 1.3:+15923648 | None:intergenic |
| AATGTCGAAGTATGAGTAAA+AGG | 0.321362 | 1.3:+15915617 | None:intergenic |
| AAACTCTTGCTTCAGATATA+TGG | 0.329301 | 1.3:+15916715 | None:intergenic |
| ATCTGGTCTGCAAGGATATT+GGG | 0.329604 | 1.3:-15915005 | MS.gene93192:CDS |
| AGCAAGAGTTTCTACTGCTT+TGG | 0.334343 | 1.3:-15916703 | MS.gene93192:CDS |
| GAAACCACTCTTCATGTTCT+TGG | 0.334932 | 1.3:+15923628 | None:intergenic |
| AAACCACTCTTCATGTTCTT+GGG | 0.336732 | 1.3:+15923629 | None:intergenic |
| ACATTTAGCATTCGAGTAGA+TGG | 0.343874 | 1.3:+15915963 | None:intergenic |
| AAAGGATCTAGCTGGGTTGC+AGG | 0.360380 | 1.3:-15916861 | MS.gene93192:CDS |
| ACAGATTGTCATGGAACTTC+CGG | 0.364114 | 1.3:-15915687 | MS.gene93192:intron |
| ACTAAGTAAAGGAAAAGTTT+TGG | 0.365161 | 1.3:-15917529 | MS.gene93192:CDS |
| TTTGGAGTGTTTGCTGTGTT+TGG | 0.368010 | 1.3:-15917618 | MS.gene93192:CDS |
| AAGAAAAGCTTAAATGTATC+AGG | 0.384915 | 1.3:-15916546 | MS.gene93192:CDS |
| ACTCGCTTACATGGAAGAAT+TGG | 0.386034 | 1.3:-15916676 | MS.gene93192:CDS |
| ATCATGCCTAGCTACTTCTA+TGG | 0.388459 | 1.3:+15917494 | None:intergenic |
| AAGAAGGGATGATCTGGATT+TGG | 0.390925 | 1.3:-15915911 | MS.gene93192:CDS |
| GGATCCCTATCCGATTGATA+TGG | 0.397893 | 1.3:-15914984 | MS.gene93192:CDS |
| CCAAGCTTGTCATAGGTAAC+TGG | 0.399584 | 1.3:+15914160 | None:intergenic |
| CTTCCAAGCTTGACACCAAA+AGG | 0.403732 | 1.3:-15918630 | MS.gene93192:CDS |
| TGAATAAAGGTGCAAATGTA+TGG | 0.404916 | 1.3:-15914189 | MS.gene93192:CDS |
| GGAGTTTCGACCACCTTGTA+TGG | 0.406336 | 1.3:-15914963 | MS.gene93192:CDS |
| TTGAGAAAGAAGGGATGATC+TGG | 0.411706 | 1.3:-15915917 | MS.gene93192:CDS |
| TTGGAGGGATGCATTGGAAA+AGG | 0.412803 | 1.3:-15914122 | MS.gene93192:CDS |
| CTAAGGGATGGAGTGTTCCT+AGG | 0.413929 | 1.3:-15915592 | MS.gene93192:intron |
| CCTTACTCCAAGCTTGTCAT+AGG | 0.414297 | 1.3:+15914153 | None:intergenic |
| AGCAGTAGCTATGGCATTCA+TGG | 0.421129 | 1.3:+15918684 | None:intergenic |
| TTGGAGTAAGGTATAGGCTT+TGG | 0.424370 | 1.3:-15914141 | MS.gene93192:CDS |
| TTAATTATTATGTGTGTTGA+AGG | 0.424888 | 1.3:+15914084 | None:intergenic |
| TAGCCCATGTTGGTCTTAGC+AGG | 0.425043 | 1.3:-15923749 | None:intergenic |
| AAGAAAGAGAGGTACCCTTT+TGG | 0.427629 | 1.3:+15918615 | None:intergenic |
| GTATGGTTCTATCAACCATT+GGG | 0.429913 | 1.3:-15914946 | MS.gene93192:CDS |
| GGACTTTGAATCCAGCGACC+TGG | 0.434368 | 1.3:-15922273 | MS.gene93192:CDS |
| TTGGAAGTTCTACAAAAGAT+AGG | 0.437166 | 1.3:+15918646 | None:intergenic |
| GGACTGTCCAATGGCTTTGG+TGG | 0.440292 | 1.3:+15923651 | None:intergenic |
| ACAAGCTTGGAGTAAGGTAT+AGG | 0.446291 | 1.3:-15914147 | MS.gene93192:CDS |
| AAAAGTAATCCGTGTTCAAC+CGG | 0.447132 | 1.3:+15915668 | None:intergenic |
| AAGTCAGCAGAGAAAGCAAC+AGG | 0.447177 | 1.3:+15916480 | None:intergenic |
| CTTTGTCCTTTCAATTTCCC+GGG | 0.450716 | 1.3:+15914914 | None:intergenic |
| TTAGGATGGTATGACTGAAC+TGG | 0.452128 | 1.3:+15916522 | None:intergenic |
| AGGGGTAAAGATGGCAAACC+TGG | 0.457895 | 1.3:-15916253 | MS.gene93192:CDS |
| GACTTTGAATCCAGCGACCT+GGG | 0.461612 | 1.3:-15922272 | MS.gene93192:CDS |
| CCAGAAGGAGGTAGTAAAGA+AGG | 0.468373 | 1.3:+15915858 | None:intergenic |
| TAAAAGGCATATGCTTAAGA+AGG | 0.468665 | 1.3:+15914789 | None:intergenic |
| TGTTCTTGGGGACTGTCCAA+TGG | 0.470104 | 1.3:+15923642 | None:intergenic |
| TGGTGTAGTGGTTAGCACTC+TGG | 0.470822 | 1.3:-15922294 | MS.gene93192:intron |
| CAACAAGAGAGAATGAATAA+AGG | 0.472000 | 1.3:-15914202 | MS.gene93192:CDS |
| ATGTCGAAGTATGAGTAAAA+GGG | 0.472157 | 1.3:+15915618 | None:intergenic |
| ATGATATTGAGTACTTAGAT+TGG | 0.472398 | 1.3:-15917476 | MS.gene93192:CDS |
| AGCGACCTGGGTTCGACTCC+CGG | 0.474243 | 1.3:-15922260 | MS.gene93192:intron |
| TGTATGGTTCTATCAACCAT+TGG | 0.476351 | 1.3:-15914947 | MS.gene93192:CDS |
| CATCATGCTCCTCCATGAAA+AGG | 0.476387 | 1.3:-15917430 | MS.gene93192:intron |
| TAAAGCAGAAGCAGTAGCTA+TGG | 0.478061 | 1.3:+15918675 | None:intergenic |
| GGGTGCAATATTTGATGTAC+AGG | 0.479113 | 1.3:-15917571 | MS.gene93192:CDS |
| TCATCTTGGCTCTGTAAATG+AGG | 0.484207 | 1.3:-15916191 | MS.gene93192:CDS |
| TCCTACCGGGAGTCGAACCC+AGG | 0.485173 | 1.3:+15922255 | None:intergenic |
| ATCCCTTCTTTCTCAAAACA+TGG | 0.488856 | 1.3:+15915924 | None:intergenic |
| GGTTCCTCAAAACATTCCAT+TGG | 0.490124 | 1.3:+15916289 | None:intergenic |
| TAGGCTTTGGAGGGATGCAT+TGG | 0.491835 | 1.3:-15914128 | MS.gene93192:CDS |
| GAGTAAGGTATAGGCTTTGG+AGG | 0.496119 | 1.3:-15914138 | MS.gene93192:CDS |
| GTTATCTTTAGGGGTAAAGA+TGG | 0.497489 | 1.3:-15916262 | MS.gene93192:CDS |
| GTTCCTCAAAACATTCCATT+GGG | 0.498608 | 1.3:+15916290 | None:intergenic |
| AGAGCATGTCCCCTTCATCT+TGG | 0.499561 | 1.3:-15916205 | MS.gene93192:CDS |
| GGGAGTCGAACCCAGGTCGC+TGG | 0.501048 | 1.3:+15922262 | None:intergenic |
| ACCATTGGGATTTCGAAGCC+CGG | 0.501562 | 1.3:-15914932 | MS.gene93192:CDS |
| TTTGGATAAACTCGCTTACA+TGG | 0.502971 | 1.3:-15916685 | MS.gene93192:CDS |
| CACTATTGTCATCATTGTGG+TGG | 0.505327 | 1.3:+15923600 | None:intergenic |
| TGGAGGGATGCATTGGAAAA+GGG | 0.507380 | 1.3:-15914121 | MS.gene93192:CDS |
| AGAAATTCTTTAAATTAGGA+TGG | 0.513147 | 1.3:+15916508 | None:intergenic |
| ATCCAAACCACCAAAGCCAT+TGG | 0.515042 | 1.3:-15923658 | MS.gene93192:CDS |
| ACAGATTTATCAGAAGTACT+TGG | 0.516953 | 1.3:+15916594 | None:intergenic |
| AAACTCCATATCAATCGGAT+AGG | 0.523237 | 1.3:+15914979 | None:intergenic |
| TCATACTTCGACATTTGCTA+AGG | 0.523457 | 1.3:-15915609 | MS.gene93192:CDS |
| AGCAGACATGTAGTTGGTGC+AGG | 0.524754 | 1.3:+15914870 | None:intergenic |
| CGATGAATACTAACCGTGGT+AGG | 0.526765 | 1.3:+15916153 | None:intergenic |
| GTAAAGTTGATGTCCAGCTT+CGG | 0.528629 | 1.3:+15923683 | None:intergenic |
| ATTGCTATATAGAATGTCAC+TGG | 0.528652 | 1.3:-15914822 | MS.gene93192:CDS |
| GGTCGAAACTCCATATCAAT+CGG | 0.530169 | 1.3:+15914974 | None:intergenic |
| AAGAAGGAAGTGATGCTGCT+GGG | 0.530413 | 1.3:+15915874 | None:intergenic |
| TTTCACAAAACAGATTGTCA+TGG | 0.531019 | 1.3:-15915696 | MS.gene93192:intron |
| TCTAAAGCGCCACTAAGTAA+AGG | 0.531979 | 1.3:-15917540 | MS.gene93192:CDS |
| CATTTACAGAGCCAAGATGA+AGG | 0.535455 | 1.3:+15916194 | None:intergenic |
| TCGAAGCCCGGGAAATTGAA+AGG | 0.535602 | 1.3:-15914920 | MS.gene93192:CDS |
| AGTACTTAGATTGGCGAGCT+CGG | 0.538321 | 1.3:-15917467 | MS.gene93192:CDS |
| AAAGAAGGAAGTGATGCTGC+TGG | 0.539768 | 1.3:+15915873 | None:intergenic |
| CCTATGACAAGCTTGGAGTA+AGG | 0.541938 | 1.3:-15914153 | MS.gene93192:CDS |
| CCAGTTACCTATGACAAGCT+TGG | 0.543997 | 1.3:-15914160 | MS.gene93192:CDS |
| CCATTGGGATTTCGAAGCCC+GGG | 0.544164 | 1.3:-15914931 | MS.gene93192:CDS |
| TGGAAGAATTGGTAAATGAC+AGG | 0.544909 | 1.3:-15916665 | MS.gene93192:CDS |
| GGGATGATCTGGATTTGGCC+TGG | 0.548326 | 1.3:-15915906 | MS.gene93192:CDS |
| CATACTTCGACATTTGCTAA+GGG | 0.548563 | 1.3:-15915608 | MS.gene93192:CDS |
| AACTCCATATCAATCGGATA+GGG | 0.548896 | 1.3:+15914980 | None:intergenic |
| CCCGGGCTTCGAAATCCCAA+TGG | 0.553272 | 1.3:+15914931 | None:intergenic |
| AACCACTCTTCATGTTCTTG+GGG | 0.553319 | 1.3:+15923630 | None:intergenic |
| CTTCGACATTTGCTAAGGGA+TGG | 0.553640 | 1.3:-15915604 | MS.gene93192:CDS |
| AAAAGGCATATGCTTAAGAA+GGG | 0.554581 | 1.3:+15914790 | None:intergenic |
| ATCAGAAGTACTTGGAGAAG+AGG | 0.554772 | 1.3:+15916602 | None:intergenic |
| CTGTACATACTGAAAGAAGA+AGG | 0.555644 | 1.3:-15916575 | MS.gene93192:CDS |
| GCTCGTGAATTCAAGTCGAT+TGG | 0.558329 | 1.3:-15916893 | MS.gene93192:CDS |
| AGGGTAAGCAGACATGTAGT+TGG | 0.560706 | 1.3:+15914864 | None:intergenic |
| ATTAGCAGAAGCACACAGAC+AGG | 0.563331 | 1.3:-15916834 | MS.gene93192:intron |
| TGACTTAAAGGATGATTCCA+TGG | 0.565498 | 1.3:-15916463 | MS.gene93192:intron |
| TAATTATTATGTGTGTTGAA+GGG | 0.567219 | 1.3:+15914085 | None:intergenic |
| ATTTACAGAGCCAAGATGAA+GGG | 0.571447 | 1.3:+15916195 | None:intergenic |
| GAGGATCTACGGCTAGTAGT+TGG | 0.571790 | 1.3:-15914226 | MS.gene93192:CDS |
| AGAAGGAAGTGATGCTGCTG+GGG | 0.573018 | 1.3:+15915875 | None:intergenic |
| GGCTGGGAATATACGACAGA+CGG | 0.577816 | 1.3:-15916002 | MS.gene93192:CDS |
| TTCCAAGCTTGACACCAAAA+GGG | 0.583881 | 1.3:-15918629 | MS.gene93192:intron |
| AGCAGACAAGAAAAGTGCGT+GGG | 0.586221 | 1.3:-15917592 | MS.gene93192:CDS |
| TTCAAGCCATAGAAGTAGCT+AGG | 0.586372 | 1.3:-15917500 | MS.gene93192:CDS |
| TATCCTTGCAGACCAGATGC+CGG | 0.588286 | 1.3:+15915010 | None:intergenic |
| ACTTATTAAATACCTCGGCA+TGG | 0.591232 | 1.3:+15915826 | None:intergenic |
| TTCCCTATTCCAGATCCCAA+TGG | 0.592203 | 1.3:-15916305 | MS.gene93192:intron |
| CATCTTGGCTCTGTAAATGA+GGG | 0.592271 | 1.3:-15916190 | MS.gene93192:CDS |
| GGGCGTGCGCAAGATCCAAA+AGG | 0.603628 | 1.3:+15915639 | None:intergenic |
| GACTTGAATTCACGAGCTAG+AGG | 0.604846 | 1.3:+15916899 | None:intergenic |
| GATGAATACTAACCGTGGTA+GGG | 0.606402 | 1.3:+15916154 | None:intergenic |
| ATGGAACTTCCGGTTGAACA+CGG | 0.610594 | 1.3:-15915677 | MS.gene93192:CDS |
| ACACCGGCATCTGGTCTGCA+AGG | 0.613320 | 1.3:-15915013 | MS.gene93192:CDS |
| TTACCCCTAAAGATAACCCA+TGG | 0.624924 | 1.3:+15916268 | None:intergenic |
| TGTCGAAGTATGAGTAAAAG+GGG | 0.625361 | 1.3:+15915619 | None:intergenic |
| ACTTGGAGAAGAGGACGTCT+CGG | 0.627193 | 1.3:+15916611 | None:intergenic |
| TTTACAGAGCCAAGATGAAG+GGG | 0.628748 | 1.3:+15916196 | None:intergenic |
| GAACCATGGGTTATCTTTAG+GGG | 0.632156 | 1.3:-15916271 | MS.gene93192:CDS |
| AAAACCTGCTAAGACCAACA+TGG | 0.632248 | 1.3:+15923745 | None:intergenic |
| ATGGTTGATAGAACCATACA+AGG | 0.639943 | 1.3:+15914950 | None:intergenic |
| AGTAAGGTATAGGCTTTGGA+GGG | 0.643282 | 1.3:-15914137 | MS.gene93192:CDS |
| AAAGGCATATGCTTAAGAAG+GGG | 0.645865 | 1.3:+15914791 | None:intergenic |
| TGGATTTATAGTCCATGCCG+AGG | 0.645907 | 1.3:-15915838 | MS.gene93192:intron |
| GCATGGACTATAAATCCAGA+AGG | 0.652893 | 1.3:+15915843 | None:intergenic |
| TCTCACTATTGTCATCATTG+TGG | 0.654016 | 1.3:+15923597 | None:intergenic |
| GAAGGAAGTGATGCTGCTGG+GGG | 0.661858 | 1.3:+15915876 | None:intergenic |
| AAACCTGCTAAGACCAACAT+GGG | 0.662746 | 1.3:+15923746 | None:intergenic |
| GTCCCCAAGAACATGAAGAG+TGG | 0.670609 | 1.3:-15923632 | MS.gene93192:CDS |
| TGGACTATAAATCCAGAAGG+AGG | 0.679360 | 1.3:+15915846 | None:intergenic |
| AAGCAGACAAGAAAAGTGCG+TGG | 0.679985 | 1.3:-15917593 | MS.gene93192:CDS |
| GCAGACAAGAAAAGTGCGTG+GGG | 0.696719 | 1.3:-15917591 | MS.gene93192:CDS |
| GTTGATAGAACCATACAAGG+TGG | 0.758266 | 1.3:+15914953 | None:intergenic |
| CGTATCGCATGTCCCTACCA+CGG | 0.775057 | 1.3:-15916166 | MS.gene93192:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 15914084 | 15923765 | 15914084 | ID=MS.gene93192 |
| chr1.3 | mRNA | 15914084 | 15923765 | 15914084 | ID=MS.gene93192.t1;Parent=MS.gene93192 |
| chr1.3 | exon | 15923603 | 15923765 | 15923603 | ID=MS.gene93192.t1.exon1;Parent=MS.gene93192.t1 |
| chr1.3 | CDS | 15923603 | 15923765 | 15923603 | ID=cds.MS.gene93192.t1;Parent=MS.gene93192.t1 |
| chr1.3 | exon | 15922261 | 15922308 | 15922261 | ID=MS.gene93192.t1.exon2;Parent=MS.gene93192.t1 |
| chr1.3 | CDS | 15922261 | 15922308 | 15922261 | ID=cds.MS.gene93192.t1;Parent=MS.gene93192.t1 |
| chr1.3 | exon | 15918630 | 15918706 | 15918630 | ID=MS.gene93192.t1.exon3;Parent=MS.gene93192.t1 |
| chr1.3 | CDS | 15918630 | 15918706 | 15918630 | ID=cds.MS.gene93192.t1;Parent=MS.gene93192.t1 |
| chr1.3 | exon | 15917431 | 15917655 | 15917431 | ID=MS.gene93192.t1.exon4;Parent=MS.gene93192.t1 |
| chr1.3 | CDS | 15917431 | 15917655 | 15917431 | ID=cds.MS.gene93192.t1;Parent=MS.gene93192.t1 |
| chr1.3 | exon | 15916835 | 15916939 | 15916835 | ID=MS.gene93192.t1.exon5;Parent=MS.gene93192.t1 |
| chr1.3 | CDS | 15916835 | 15916939 | 15916835 | ID=cds.MS.gene93192.t1;Parent=MS.gene93192.t1 |
| chr1.3 | exon | 15916464 | 15916739 | 15916464 | ID=MS.gene93192.t1.exon6;Parent=MS.gene93192.t1 |
| chr1.3 | CDS | 15916464 | 15916739 | 15916464 | ID=cds.MS.gene93192.t1;Parent=MS.gene93192.t1 |
| chr1.3 | exon | 15916167 | 15916314 | 15916167 | ID=MS.gene93192.t1.exon7;Parent=MS.gene93192.t1 |
| chr1.3 | CDS | 15916167 | 15916314 | 15916167 | ID=cds.MS.gene93192.t1;Parent=MS.gene93192.t1 |
| chr1.3 | exon | 15915839 | 15916023 | 15915839 | ID=MS.gene93192.t1.exon8;Parent=MS.gene93192.t1 |
| chr1.3 | CDS | 15915839 | 15916023 | 15915839 | ID=cds.MS.gene93192.t1;Parent=MS.gene93192.t1 |
| chr1.3 | exon | 15915593 | 15915705 | 15915593 | ID=MS.gene93192.t1.exon9;Parent=MS.gene93192.t1 |
| chr1.3 | CDS | 15915593 | 15915705 | 15915593 | ID=cds.MS.gene93192.t1;Parent=MS.gene93192.t1 |
| chr1.3 | exon | 15914757 | 15915051 | 15914757 | ID=MS.gene93192.t1.exon10;Parent=MS.gene93192.t1 |
| chr1.3 | CDS | 15914757 | 15915051 | 15914757 | ID=cds.MS.gene93192.t1;Parent=MS.gene93192.t1 |
| chr1.3 | exon | 15914084 | 15914257 | 15914084 | ID=MS.gene93192.t1.exon11;Parent=MS.gene93192.t1 |
| chr1.3 | CDS | 15914084 | 15914257 | 15914084 | ID=cds.MS.gene93192.t1;Parent=MS.gene93192.t1 |
| Gene Sequence |
| Protein sequence |
