AlfalfaGEDB | MS.gene33603

M. sativa cultivar XinJiangDaYe / MS.gene33603

KEGG: K13600
GO: GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0010277 GO:0016491 GO:0016701 GO:0016703 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0048037 GO:0051536 GO:0051537 GO:0051540 GO:0055114
PFAM: PF00355.29 PF08417.15 PF19112.3

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33603.t1	XP_003589598.2	98.7	531	7	0	1	531	1	531	0.00E+00	1092.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33603.t1	Q9MBA1	75.0	532	126	2	3	527	4	535	5.9e-246	851.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33603.t1	G7I8G8	98.7	531	7	0	1	531	1	531	0.0e+00	1092.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene33603	0.87119	8.25E-67	-1.69E-46
MS.gene049173	MS.gene33603	0.806469	8.10E-50	-1.69E-46
MS.gene049217	MS.gene33603	0.819155	1.35E-52	-1.69E-46
MS.gene049222	MS.gene33603	0.872789	2.43E-67	-1.69E-46
MS.gene049232	MS.gene33603	0.905058	6.40E-80	-1.69E-46
MS.gene049259	MS.gene33603	-0.827764	1.31E-54	-1.69E-46
MS.gene049285	MS.gene33603	0.894292	2.83E-75	-1.69E-46
MS.gene049320	MS.gene33603	0.912693	1.45E-83	-1.69E-46
MS.gene04939	MS.gene33603	0.821539	3.83E-53	-1.69E-46
MS.gene049600	MS.gene33603	0.868448	6.48E-66	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33603.t1	MTR_1g030480	98.682	531	7	0	1	531	1	531	0.0	1096
MS.gene33603.t1	MTR_3g105820	25.926	351	211	15	210	531	99	429	4.89e-26	112
MS.gene33603.t1	MTR_8g085790	23.796	353	193	19	213	513	61	389	3.33e-14	75.5
MS.gene33603.t1	MTR_8g085840	21.448	359	211	14	213	521	85	422	8.56e-14	74.3
MS.gene33603.t1	MTR_8g085820	21.849	357	196	17	213	513	61	390	2.09e-12	70.1
MS.gene33603.t1	MTR_4g057200	25.862	174	109	6	210	364	93	265	4.98e-11	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33603.t1	AT1G44446	75.000	532	126	2	3	527	4	535	0.0	829
MS.gene33603.t1	AT1G44446	75.000	480	113	2	3	475	4	483	0.0	739
MS.gene33603.t1	AT1G44446	77.829	433	96	0	95	527	1	433	0.0	715
MS.gene33603.t1	AT1G44446	71.802	383	101	2	3	378	4	386	0.0	555
MS.gene33603.t1	AT2G24820	23.650	389	244	13	160	520	45	408	3.96e-25	109
MS.gene33603.t1	AT3G44880	26.667	225	138	9	210	410	85	306	9.23e-12	67.8

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Find 135 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCATATGCTTAAGAA+GGG	0.554581	1.1:+15818318	None:intergenic
AAAAGTAATCCGTGTTCAAC+CGG	0.447132	1.1:+15819227	None:intergenic
AAACTCCATATCAATCGGAT+AGG	0.523237	1.1:+15818507	None:intergenic
AAACTCTTGCTTCAGATATA+TGG	0.329301	1.1:+15820263	None:intergenic
AAAGAAGGAAGTGATGCTGC+TGG	0.539768	1.1:+15819432	None:intergenic
AAAGGATCTAGCTGGGTTGC+AGG	0.360380	1.1:-15820409	MS.gene33603:CDS
AAAGGCATATGCTTAAGAAG+GGG	0.645865	1.1:+15818319	None:intergenic
AACTCCATATCAATCGGATA+GGG	0.548896	1.1:+15818508	None:intergenic
AAGAAAAGCTTAAATGTATC+AGG	0.384915	1.1:-15820094	MS.gene33603:CDS
AAGAAAGAGATGTACCCTTT+TGG	0.414498	1.1:+15822178	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCTTGCTTCAGATATA+TGG	+	chr1.1:15819588-15819607	None:intergenic	30.0%
AACTAGTAACTACTCAACAT+TGG	-	chr1.1:15821849-15821868	MS.gene33603:intron	30.0%
AACTGAAATTTCCTAATGGT+TGG	-	chr1.1:15820258-15820277	MS.gene33603:CDS	30.0%
AATCAGATACCATAAGAAAG+TGG	-	chr1.1:15821777-15821796	MS.gene33603:intron	30.0%
AATGTCGAAGTATGAGTAAA+AGG	+	chr1.1:15820675-15820694	None:intergenic	30.0%
ATACTCTTTCATATATGGAC+CGG	+	chr1.1:15818600-15818619	None:intergenic	30.0%
ATATAGGGAGAATACAACAA+CGG	+	chr1.1:15819306-15819325	None:intergenic	30.0%
ATGTCGAAGTATGAGTAAAA+GGG	+	chr1.1:15820674-15820693	None:intergenic	30.0%
ATTCATCATATGTGCCTAAT+TGG	-	chr1.1:15821807-15821826	MS.gene33603:intron	30.0%
ATTGCTATATAGAATGTCAC+TGG	-	chr1.1:15821498-15821517	MS.gene33603:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	15817603	15822267	15817603	ID=MS.gene33603
chr1.1	mRNA	15817603	15822267	15817603	ID=MS.gene33603.t1;Parent=MS.gene33603
chr1.1	exon	15822193	15822267	15822193	ID=MS.gene33603.t1.exon1;Parent=MS.gene33603.t1
chr1.1	CDS	15822193	15822267	15822193	ID=cds.MS.gene33603.t1;Parent=MS.gene33603.t1
chr1.1	exon	15820979	15821203	15820979	ID=MS.gene33603.t1.exon2;Parent=MS.gene33603.t1
chr1.1	CDS	15820979	15821203	15820979	ID=cds.MS.gene33603.t1;Parent=MS.gene33603.t1
chr1.1	exon	15820383	15820487	15820383	ID=MS.gene33603.t1.exon3;Parent=MS.gene33603.t1
chr1.1	CDS	15820383	15820487	15820383	ID=cds.MS.gene33603.t1;Parent=MS.gene33603.t1
chr1.1	exon	15820012	15820287	15820012	ID=MS.gene33603.t1.exon4;Parent=MS.gene33603.t1
chr1.1	CDS	15820012	15820287	15820012	ID=cds.MS.gene33603.t1;Parent=MS.gene33603.t1
chr1.1	exon	15819715	15819862	15819715	ID=MS.gene33603.t1.exon5;Parent=MS.gene33603.t1
chr1.1	CDS	15819715	15819862	15819715	ID=cds.MS.gene33603.t1;Parent=MS.gene33603.t1
chr1.1	exon	15819398	15819582	15819398	ID=MS.gene33603.t1.exon6;Parent=MS.gene33603.t1
chr1.1	CDS	15819398	15819582	15819398	ID=cds.MS.gene33603.t1;Parent=MS.gene33603.t1
chr1.1	exon	15819152	15819264	15819152	ID=MS.gene33603.t1.exon7;Parent=MS.gene33603.t1
chr1.1	CDS	15819152	15819264	15819152	ID=cds.MS.gene33603.t1;Parent=MS.gene33603.t1
chr1.1	exon	15818285	15818579	15818285	ID=MS.gene33603.t1.exon8;Parent=MS.gene33603.t1
chr1.1	CDS	15818285	15818579	15818285	ID=cds.MS.gene33603.t1;Parent=MS.gene33603.t1
chr1.1	exon	15817603	15817776	15817603	ID=MS.gene33603.t1.exon9;Parent=MS.gene33603.t1
chr1.1	CDS	15817603	15817776	15817603	ID=cds.MS.gene33603.t1;Parent=MS.gene33603.t1

Gene Sequence

>MS.gene33603

ATGAATGCCATAGCTACTGCTTCTGCTTTATCTCTTCCTATCTTTTGTAGAACTACCAAGCTTGACACCAAAAGGGTACATCTCTTTCTTCTTCTTATTCTTCTTCTTCTTTTCTTTCCTTTTTTTGTTTTTTTGATAGTTGCTTGTTTTCTAAGGTGAATGATGAACTCAATTGTGCTCAAGATGAATATTTGGCTTCATGAACTTAGCCTAGTCTCTTTTATTTTTATGAAAACTTTGCTTACAGGCTTGTTTTTTGAGACATAGCTTTTAGTCTTGATAAAATATAATTTGACTTTAGGTTGACTTGTAAGGTAAGGGATGCATGAGTATAAATTTAGTCACTATTTAGGCTACATCACTATTTGTATAGATTATATAAATATAGATTATATACTACCTCAATCTCAAGACTTGTGGCTCGAGTGGTTTAATAATAGGTGGCTCAATTGATCTAAGATAGATTCTGATACCATTTTAGAATTCGAGTTTGAGCCTAACTCGACAAAGTTGGAGGTGTGGCTTGTGTGTTTGACATTATCATACATTGTTTTTTTTAGGTTTTTAATAGGAAATACCTATGCCACCATTAAATTTAGAGAAATGAATTTATGTTTTTTGTGTAAACTGATATCCTTCGCACGCAACTGCGTAATCCCTCGAGCCTTGTGGGACCAAAATGGATGACAAGTTGTCACCAAGAGTTTTAACGCCGTTGCATGCTCAAATTAGGGTTTGAACTTAGAGAAACGAATTTCGGACATCAGAATTTTGATGTCAAATATTATGTCCTTTTACTCTGGTGTACTTTTAAAATGTGTGCAATTTGTAGAAGATAGAAAGTGAGAGATAGAGTTTACTACCTACAGTTTTGTACGAAGTGTTTGCATTTTGATGTTCAAAGAACACCATTGTTAAATTTAAACTTAATATAACGATTAGCACTTAATAGTATAGCAAGAAGAAAGTTTCTCCTGTGTAGGGTCTACATCTTCCGGTCCATATATGAAAGAGTATGGTTTCTTATTCTTTAGCTTATACTTTTTTGGGTTGTGGATTTTCAGGGTTTGAAAGGTAAATTTGGAGTGTTTGCTGTGTTTGGAGAAGCAGACAAGAAAAGTGCGTGGGGTGCGATATTTGATGTACAGGATCCAAGATCTAAAGCGCCACTAAGTAAAGGAAAAGTTTTGGATGTATTTCAAGCCATAGAAGTAGCTAGGCATGATATTGAGTACTTAGATTGGCGAGCTCGGCAAGATGTGCTTACCATCATGCTCCTCCATGAAAAGGTTTCAGCTAATTTCTGTCATTGTTATATAAATTTTTAAAAGAGTCTGATTCTTTGTGAATTCAGACATGCATGCACCTCGTTGGATCAAATTAGAGACTTGGTACCATATAACTTTTGACTGGTCACCATCTATGTTTGTTTGAATTGACATATTTGAGCTTATCTATGGTCATAAGCCCTTGTGAGACTATTTGGGAGAGATTATGAAAACAAACTATGATATGTCCATAAGCTGCTTTCAGCTTATTTCCATAAACTCTCTAGGATAGCTTTTGAAAATAGCTGATAGCTCATATGAAAATAATTTGACTTCATTTTATCTTTTACTATATAAATAGCTTAACATGCAAGTACTTATATGAAAAAACTTGATTAAGCTGTTTATCCAAACAAGTGGGATAAAGTTTGGCCGTTGTTGTATTCTCCCTATATGTGCTATAAAGCATCCCACCATGTGCTTATCTTAATAATCAGAAACTATTGGTGTAGGTGGTTGAAGTTCTTAATCCTCTAGCTCGTGAATTCAAGTCGATTGGCACCATGAAAAAGGATCTAGCTGGGTTGCAGGACGAATTAGCAGAAGCACACAGACAGGTAAATAAATAACTATTAGCAGAACTGAACTAGCCACCAAAGCTTCAAATTCGTATTTGTTTCTCAATATAATATAAGTTAATGAATTACTGCAGGTCCATATATCTGAAGCAAGAGTTTCTACTGCTTTGGATAAACTCCCTTACATGGAAGAATTGGTAAATGACAGGCTATTGCAAGACAGAAGCACAGCTGAAGTTGCCGAGACGTCCTCTTCTCCAAGTACTTCTGATAAATCTGTACATACTGAAAGAAGAAGGAAGCCGAAGAAAAGCTTAAATGTATCAGGTCCAGTTCAGTCATACCATCCTAATTTAAAGAATTTCTGGTATCCTGTTGCTTTCTCTGCTGACTTAAAGGATGATTCCATGGTATGTCGATATCAATCCTTTTTATTTAAAAAAAATGATTTAAAAATATGCTTTTAGTCCTTGCAAATATACCATTTTTTGCTTTTAGTCCTTTTAAAGATATTTGTCGTCTTGAGTCTCATAAGTGTGTTGCTCCTTCCCTATTCCAGATCCCAATGGAATGTTTTGAGGAACCATGGGTTATCTTTAGGGGTAAAGATGGCAAACCTGGATGTGTTCAAAATACATGTGCACACAGAGCATGTCCCCTTCATCTTGGCTCTGTAAATGAGGGTCGTATCGCATGTCCCTACCACGGTTAGTATTCATCGGAACGAGCATGTTGAACATTTTCGCTTCAGTAGCATGCTTATTATATCATAGTAGTGAGTTACAACAGATTTATTTCTATGAGACAGAAACTGAAATTTCCTAATGGTTGGATATCAGGCTGGGAATATACGACAGACGGAAAATGCGAGAAAATGCCATCTACTCGAATGCTAAATGTAAAGATAAAGTCAATTCCATGTTTTGAGAAAGAAGGGATGATCTGGATTTGGCCTGGCAGTGATCCCCCAGCAGCATCACTTCCTTCTTTACTACCTCCTTCTGGATTTATAGTCCATGCCGAGGTATTTAATAAGTATAGTCTGTCCTAATAGGTATTCTAAGCTATGAAAGAACAGCGAATTACAATTTTACGATTATAAAGAAAAAAGAAGATAAAAGTCATGGTTTCTTACCCGGTATCTTTTCACAAAACAGATTGTCATGGAACTTCCGGTTGAACACGGATTACTTTTGGACAACCTTTTGGATCTTGCGCACGCCCCTTTTACTCATACTTCGACATTTGCTAAGGGATGGAGTGTTCCTAGGTTTGTTTCGTTTATACCCTTATAAGTGATATGATTCAATATGCGAAAATGAAATTGGTTTATGTTCTTCAAAATAGTCAATTTGTTACAAGTCTTAGAAGTCTTTTTCTTTTGACAAGGTAATGTACTGCAATGCTATGTTTTTTCAGAGTTCATGTATCATAATAACTTAGGGCCTGTTTTAATTTGCTTATTTGAGCTTATTTACCTGGCATAAGCACTTGTGGGACTGTTTGGAAAAGTATATAGAAACAACTTATGACATGTCCATAAGTTTTTTTTTTTGAAGGAGACATGTCCATAAGTTGTTTTCTGCTTATTTCCATGAGTTCTCCAAGGTAGCAGCTTATGTAAATTTGATTTGATTTTATTTTTTGTTGTAAAAATAACTTCTACAGTACTACGCTATGTATATGATATGCTTTTATGATGCAGGCACTTAATTAAGCTGTTTATCCTTAGATATTTCTGATTTGCGCGTGAAATAGTTCATATTTTAGTTATAACTGCTTTTAATATTATGAAATGATAGATTTATAGGTCATTTACTCTCTATGAATTTGAATTTGCAGCTTTGTGAATTTTTTGACACCGGCATCTGGTCTGCAAGGATATTGGGATCCCTATCCGATTGATATGGAGTTTCGACCACCTTGTATGGTTCTATCAACCATTGGGATTTCGAAGCCCGGGAAATTGAAAGGACAAAGCACCAAAGAATGTTCAACACACCTGCACCAACTACATGTCTGCTTACCCTCTTCAAAAGATAAAACAAGATTGCTATATAGAATGTCACTGGATTTCGCTCCCCTTCTTAAGCATATGCCTTTTATGGAACATCTATGGAGGCATTTTGCAGAACAGGTAGAGTTTTTTCCTCCCTTTTTGATGTCAATTCACAATTGATTGTGTTTGAGCAAGGAATAAAAGGAACCAAAATGAGTTACACTTCAAAAGGAACAAATTTTGGGTATTTATGGCGTAAAAACGTAATTCTATGTTTAAATTGATGAGTATATGACTTACCAACCTGTGATTTGTCCGAGTGGTTAGAAAATCAGATACCATAAGAAAGTGGCAAGAGTATTCATCATATGTGCCTAATTGGTTCTTCGATGGAGATTATTAACTAGTAACTACTCAACATTGGCAGATATTTCGTATGTGCCATAACTATTCATCATATGTGCCATAACTTGATTTCAGAAAAATTGACATGACTCGAAGTTTTCAAGTTTGATTATTGATGAAGTGCTATTCTACTGTTAAGATAAATCTTTCTTGTGTTTGTTTTTGGACGTGCTTGTGAATGTAAATGACTCTCAAAATTGACTTCATCTTCTAATATTGTGTTGATATTTCCATACTTTAGGTTTTAAATGAGGATCTACGGCTAGTAGTTGGCCAACAAGAGAGAATGAATAAAGGTGCAAATGTATGGAATGTACCAGTTACCTATGACAAGCTTGGAGTAAGGTATAGGCTTTGGAGGGATGCATTGGAAAAGGGAGATAAGCAACTACCCTTCAACACACACAATAATTAA

Protein sequence

>MS.gene33603.t1

MNAIATASALSLPIFCRTTKLDTKRGLKGKFGVFAVFGEADKKSAWGAIFDVQDPRSKAPLSKGKVLDVFQAIEVARHDIEYLDWRARQDVLTIMLLHEKVVEVLNPLAREFKSIGTMKKDLAGLQDELAEAHRQVHISEARVSTALDKLPYMEELVNDRLLQDRSTAEVAETSSSPSTSDKSVHTERRRKPKKSLNVSGPVQSYHPNLKNFWYPVAFSADLKDDSMIPMECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIACPYHGWEYTTDGKCEKMPSTRMLNVKIKSIPCFEKEGMIWIWPGSDPPAASLPSLLPPSGFIVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSFVNFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLKGQSTKECSTHLHQLHVCLPSSKDKTRLLYRMSLDFAPLLKHMPFMEHLWRHFAEQVLNEDLRLVVGQQERMNKGANVWNVPVTYDKLGVRYRLWRDALEKGDKQLPFNTHNN