AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71268


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71268.t1 MTR_0059s0060 97.701 348 7 1 1 348 13 359 0.0 687
MS.gene71268.t1 MTR_4g080120 40.741 216 121 2 132 340 179 394 1.19e-41 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71268.t1 AT3G63490 65.439 353 101 7 1 344 1 341 2.38e-157 445
MS.gene71268.t1 AT3G63490 58.923 297 98 8 1 288 1 282 1.36e-103 306
MS.gene71268.t1 AT2G42710 42.326 215 118 2 132 340 188 402 5.03e-52 177

Find 83 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGTTGATCATTATATTT+AGG 0.131759 4.2:-64454652 None:intergenic
GGAATCGTTCACTTGCCTTT+TGG 0.287837 4.2:+64457457 MS.gene71268:CDS
ACTGTTGATCATTATATTTA+GGG 0.290232 4.2:-64454651 None:intergenic
GGGAGAGAGGAAGAAGGTTC+TGG 0.298442 4.2:-64452242 None:intergenic
CTTGAAGACAGCAATTTCTT+TGG 0.313872 4.2:+64454564 MS.gene71268:CDS
AGAAGAAGGAGAAAGGTCTT+GGG 0.330843 4.2:-64452206 None:intergenic
CATTACTTCTCAAGAGTGAT+AGG 0.340890 4.2:+64452449 MS.gene71268:CDS
AAAACTTGCAGGAGCAGATT+TGG 0.343136 4.2:+64456404 MS.gene71268:CDS
GGTCAATGTTGAGGCGGAAA+TGG 0.347628 4.2:-64454630 None:intergenic
GCTGTTACAGTGCCAGCTTT+TGG 0.356409 4.2:-64457226 None:intergenic
GGAGAGAGGAAGAAGGTTCT+GGG 0.357732 4.2:-64452241 None:intergenic
TTCGATGAAGCAAAACTTGC+AGG 0.364692 4.2:+64456393 MS.gene71268:CDS
TGCTAGCCTAGGGAAGATTC+TGG 0.368120 4.2:+64457180 MS.gene71268:CDS
GAGAAGAAGGAGAAAGGTCT+TGG 0.368226 4.2:-64452207 None:intergenic
GTAAGTCTGCCGAAGGGAAC+TGG 0.379100 4.2:+64454788 MS.gene71268:CDS
AATGCAGCTTTCCCTTTCTT+AGG 0.383121 4.2:-64452430 None:intergenic
GGTGAGATCTAAGAGATTCT+TGG 0.384948 4.2:+64454504 MS.gene71268:intron
GGATTTGGCATGAGTCCTCT+TGG 0.392084 4.2:-64457205 None:intergenic
AACACCTTAGGCATCATATC+TGG 0.401176 4.2:-64456495 None:intergenic
GGCTATAGCAGAATTCAAAC+AGG 0.402560 4.2:+64457405 MS.gene71268:intron
TTCTACTGTTTCTACAAACT+TGG 0.402665 4.2:-64454605 None:intergenic
GCTAGCCTAGGGAAGATTCT+GGG 0.405793 4.2:+64457181 MS.gene71268:CDS
GATCTGATAGAAGAGATAAA+AGG 0.407945 4.2:+64456438 MS.gene71268:CDS
AACAGGGAAAAGTTGAATAC+AGG 0.442667 4.2:+64457422 MS.gene71268:CDS
CAGCAATGGGGCCTTCAGTC+AGG 0.443694 4.2:+64457678 MS.gene71268:CDS
GCGCACATATGCTCAGCAAT+GGG 0.454736 4.2:+64457665 MS.gene71268:CDS
AGAGATAAAAGGAGGATACA+TGG 0.455640 4.2:+64456449 MS.gene71268:CDS
GTCAATGTTGAGGCGGAAAT+GGG 0.464039 4.2:-64454629 None:intergenic
TTGTTTCAGGTTGCTAGCCT+AGG 0.472690 4.2:+64457169 MS.gene71268:intron
GAATACAGGGCAGATAAAAC+AGG 0.473583 4.2:+64457436 MS.gene71268:CDS
TTCAGTCAGGTTAAATATCA+AGG 0.479582 4.2:+64457691 MS.gene71268:CDS
GTTACTACTAAGCCTAAGAA+AGG 0.488925 4.2:+64452418 MS.gene71268:CDS
GTTAGATTAACCGACTTAGT+AGG 0.492831 4.2:-64452277 None:intergenic
CGGGTGCGAAAGGTGTGTAC+TGG 0.503896 4.2:+64457636 MS.gene71268:CDS
GGAAAAGAACGGAGAGAAGA+AGG 0.505919 4.2:-64452220 None:intergenic
GAAGAAGGAGAAAGGTCTTG+GGG 0.510778 4.2:-64452205 None:intergenic
TTAATCTAACCTACCAGTCT+AGG 0.519742 4.2:+64452290 MS.gene71268:CDS
TGCGCACATATGCTCAGCAA+TGG 0.525735 4.2:+64457664 MS.gene71268:CDS
GTAAAATCGAAGACCTAGAC+TGG 0.533354 4.2:-64452303 None:intergenic
TGTTTCAGGTTGCTAGCCTA+GGG 0.533363 4.2:+64457170 MS.gene71268:intron
CTCATGCCAAATCCAAAAGC+TGG 0.536274 4.2:+64457214 MS.gene71268:CDS
TATATTTAGGGTCAATGTTG+AGG 0.541178 4.2:-64454639 None:intergenic
AAGAAGGAGAAAGGTCTTGG+GGG 0.541318 4.2:-64452204 None:intergenic
GCTTCAAAACGAGGGGAGAG+AGG 0.550446 4.2:-64452255 None:intergenic
AACGGAGAGAAGAAGGAGAA+AGG 0.551129 4.2:-64452213 None:intergenic
AACAAACCATCGGGTGCGAA+AGG 0.555511 4.2:+64457626 MS.gene71268:CDS
CTGATAGAAGAGATAAAAGG+AGG 0.556066 4.2:+64456441 MS.gene71268:CDS
TTGGCCCCAGAATCTTCCCT+AGG 0.558256 4.2:-64457186 None:intergenic
GTAGAGGCAAACAAACCATC+GGG 0.559336 4.2:+64457617 MS.gene71268:CDS
AAAATAGCCGTTCTTACTCA+AGG 0.563803 4.2:+64454821 MS.gene71268:CDS
AGCAGATTTGGTAGGTGGAG+AGG 0.564195 4.2:+64456416 MS.gene71268:CDS
TACACACCTTTCGCACCCGA+TGG 0.566838 4.2:-64457632 None:intergenic
TTCTCCAGATATGATGCCTA+AGG 0.567948 4.2:+64456491 MS.gene71268:CDS
AACGAGGGGAGAGAGGAAGA+AGG 0.573710 4.2:-64452248 None:intergenic
GAGAAGGATGGTGTTGATGA+TGG 0.575832 4.2:+64452373 MS.gene71268:CDS
ATTACTTCTCAAGAGTGATA+GGG 0.582083 4.2:+64452450 MS.gene71268:CDS
ATAATCACCTTGAGTAAGAA+CGG 0.583105 4.2:-64454828 None:intergenic
TTGATATTTAACCTGACTGA+AGG 0.584092 4.2:-64457689 None:intergenic
TTACTACTAAGCCTAAGAAA+GGG 0.585009 4.2:+64452419 MS.gene71268:CDS
AGTAGAGGCAAACAAACCAT+CGG 0.588958 4.2:+64457616 MS.gene71268:CDS
GCAGGAGCAGATTTGGTAGG+TGG 0.594774 4.2:+64456411 MS.gene71268:CDS
AACTGTTGATGAAGATGAGA+AGG 0.595375 4.2:+64452357 MS.gene71268:CDS
CTTGCAGGAGCAGATTTGGT+AGG 0.596280 4.2:+64456408 MS.gene71268:CDS
GGGGTGAGAATAGAAGAAGA+GGG 0.598380 4.2:-64452184 None:intergenic
TGTAACAGCTAATATTACTC+AGG 0.602046 4.2:+64457240 MS.gene71268:CDS
TTAATAGGTAAGTCTGCCGA+AGG 0.603199 4.2:+64454781 MS.gene71268:intron
ACTTAGTAGGCTTCAAAACG+AGG 0.603839 4.2:-64452264 None:intergenic
ACAGGGAAAAGTTGAATACA+GGG 0.604006 4.2:+64457423 MS.gene71268:CDS
AATCGAAGACCTAGACTGGT+AGG 0.609515 4.2:-64452299 None:intergenic
GGGTGAGAATAGAAGAAGAG+GGG 0.614380 4.2:-64452183 None:intergenic
AGAAGGAGAAAGGTCTTGGG+GGG 0.616732 4.2:-64452203 None:intergenic
CTAGCCTAGGGAAGATTCTG+GGG 0.617778 4.2:+64457182 MS.gene71268:CDS
AGAAGGTTCTGGGAAAAGAA+CGG 0.632360 4.2:-64452231 None:intergenic
ATTTAGGGTCAATGTTGAGG+CGG 0.636560 4.2:-64454636 None:intergenic
GGGAAGATTCTGGGGCCAAG+AGG 0.638508 4.2:+64457190 MS.gene71268:CDS
TAATTTGCAGAAATCAGTAG+AGG 0.640381 4.2:+64457601 MS.gene71268:intron
CTTAGTAGGCTTCAAAACGA+GGG 0.651809 4.2:-64452263 None:intergenic
AGCAACATCAGCAGTGACAG+CGG 0.657412 4.2:-64452332 None:intergenic
GTTGATGAAGATGAGAAGGA+TGG 0.658305 4.2:+64452361 MS.gene71268:CDS
TTAGTAGGCTTCAAAACGAG+GGG 0.672051 4.2:-64452262 None:intergenic
CGCACATATGCTCAGCAATG+GGG 0.673772 4.2:+64457666 MS.gene71268:CDS
TAATAGGTAAGTCTGCCGAA+GGG 0.688585 4.2:+64454782 MS.gene71268:intron
GCTATAGCAGAATTCAAACA+GGG 0.697806 4.2:+64457406 MS.gene71268:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATTATTCATAAAATAAA+TGG - chr4.2:64454459-64454478 None:intergenic 10.0%
!! ATAATTTCATAAAATATACA+TGG + chr4.2:64454102-64454121 MS.gene71268:intron 10.0%
!! CAATACATATAATTAAAAAA+AGG - chr4.2:64455552-64455571 None:intergenic 10.0%
!!! TTTTTGTTGATTTTTTTTTT+TGG + chr4.2:64452517-64452536 MS.gene71268:intron 10.0%
!! AAAAAATATTAGTTAGAATG+AGG + chr4.2:64455691-64455710 MS.gene71268:intron 15.0%
!! AAAATAAAAAAAATACAGCA+AGG - chr4.2:64455864-64455883 None:intergenic 15.0%
!! ATTAGATTGAACATTAAATT+GGG + chr4.2:64456046-64456065 MS.gene71268:intron 15.0%
!! TAAAGTTAAACAATATAAAG+TGG + chr4.2:64456112-64456131 MS.gene71268:intron 15.0%
!! TAACAAATTATCTAGAAAAT+TGG - chr4.2:64452899-64452918 None:intergenic 15.0%
!!! AAAAAAACATTTTCTTGTAA+AGG + chr4.2:64454904-64454923 MS.gene71268:intron 15.0%
!!! AAAAAACATTTTCTTGTAAA+GGG + chr4.2:64454905-64454924 MS.gene71268:intron 15.0%
!!! ACAACCATTTTAAAAATATA+TGG - chr4.2:64455366-64455385 None:intergenic 15.0%
!!! ATGTCCATATATTTTTAAAA+TGG + chr4.2:64455359-64455378 MS.gene71268:intron 15.0%
!!! TACATTTTGATAAAAAGAAA+AGG - chr4.2:64457350-64457369 None:intergenic 15.0%
!!! TGTTTTTAGCATTTATTATT+TGG + chr4.2:64457117-64457136 MS.gene71268:intron 15.0%
!!! TTATTATTTTTCCTTCTTTT+GGG + chr4.2:64457009-64457028 MS.gene71268:intron 15.0%
!! AAATTAAAGGTAGATATTGT+AGG - chr4.2:64455460-64455479 None:intergenic 20.0%
!! AAATTATTGCATATAATGGT+AGG - chr4.2:64454290-64454309 None:intergenic 20.0%
!! AACTGTTGATCATTATATTT+AGG - chr4.2:64454655-64454674 None:intergenic 20.0%
!! ACTGTTGATCATTATATTTA+GGG - chr4.2:64454654-64454673 None:intergenic 20.0%
!! ATAATGATGACTATAATCAA+CGG - chr4.2:64456946-64456965 None:intergenic 20.0%
!! ATTCCAATTAACAAGTTATT+GGG - chr4.2:64456192-64456211 None:intergenic 20.0%
!! GATTAGATTGAACATTAAAT+TGG + chr4.2:64456045-64456064 MS.gene71268:intron 20.0%
!! TAAAAAGAATTATGCAATCA+TGG - chr4.2:64457383-64457402 None:intergenic 20.0%
!! TATTCCAATTAACAAGTTAT+TGG - chr4.2:64456193-64456212 None:intergenic 20.0%
!! TGAAACTAAATTTATCAACT+TGG - chr4.2:64456687-64456706 None:intergenic 20.0%
!! TTAAAATGGTTGTAATTACT+AGG + chr4.2:64455373-64455392 MS.gene71268:intron 20.0%
!! TTTAGCATTTATTATTTGGA+TGG + chr4.2:64457121-64457140 MS.gene71268:intron 20.0%
!! TTTATAATGAACCCAAATTA+CGG + chr4.2:64453398-64453417 MS.gene71268:intron 20.0%
!!! AATTTTAATAACTACAGTTG+TGG + chr4.2:64452558-64452577 MS.gene71268:intron 20.0%
!!! ATCATTGAATTTTTCATGTT+TGG + chr4.2:64454422-64454441 MS.gene71268:intron 20.0%
!!! ATTTTTTTTTTTGGTCAAGT+GGG + chr4.2:64452526-64452545 MS.gene71268:intron 20.0%
!!! CAATCGATGTAAATATTTTA+CGG + chr4.2:64453312-64453331 MS.gene71268:intron 20.0%
!!! GTTATTATTTTTCCTTCTTT+TGG + chr4.2:64457008-64457027 MS.gene71268:intron 20.0%
!!! TAACTTGTTAATTGGAATAT+TGG + chr4.2:64456194-64456213 MS.gene71268:intron 20.0%
!!! TAATTTATAGTTCATTTTGC+AGG + chr4.2:64456363-64456382 MS.gene71268:intron 20.0%
!!! TATTATTTTTCCTTCTTTTG+GGG + chr4.2:64457010-64457029 MS.gene71268:intron 20.0%
!!! TTATTGTTTTCTTGTTTTTC+TGG + chr4.2:64452489-64452508 MS.gene71268:intron 20.0%
!!! TTTTCGATTTCAATTTTTGT+AGG - chr4.2:64455334-64455353 None:intergenic 20.0%
! AAATATTAGTTAGAATGAGG+AGG + chr4.2:64455694-64455713 MS.gene71268:intron 25.0%
! AAATGCTAAAAACAATGTGA+TGG - chr4.2:64457111-64457130 None:intergenic 25.0%
! AAATTTCAGAAGATATTGGA+AGG - chr4.2:64454214-64454233 None:intergenic 25.0%
! AAGATATAGTGAGAAATTGT+TGG + chr4.2:64453821-64453840 MS.gene71268:intron 25.0%
! AAGATTCAAAAGTTAGTAAC+TGG + chr4.2:64456610-64456629 MS.gene71268:intron 25.0%
! AATAGTTAATACACAACCAT+AGG - chr4.2:64455227-64455246 None:intergenic 25.0%
! AATGCTAAAAACAATGTGAT+GGG - chr4.2:64457110-64457129 None:intergenic 25.0%
! AATTAGAATAACCAAAGAGA+CGG - chr4.2:64456348-64456367 None:intergenic 25.0%
! AGACATCATAGATAAGTTAA+TGG + chr4.2:64456149-64456168 MS.gene71268:intron 25.0%
! AGCGAAATTATTGCATATAA+TGG - chr4.2:64454294-64454313 None:intergenic 25.0%
! ATCATAACAAATCAAGAGTT+TGG - chr4.2:64455434-64455453 None:intergenic 25.0%
! ATGAAGGAAAAAAAATTCAC+TGG + chr4.2:64454041-64454060 MS.gene71268:intron 25.0%
! ATTAAGGGAATTAATTGTGT+TGG + chr4.2:64452622-64452641 MS.gene71268:intron 25.0%
! ATTTCTGCAAATTAGAACAA+TGG - chr4.2:64457595-64457614 None:intergenic 25.0%
! CAGATAGAAAATTCAATTTG+GGG - chr4.2:64457545-64457564 None:intergenic 25.0%
! CGTAAAATATTTACATCGAT+TGG - chr4.2:64453314-64453333 None:intergenic 25.0%
! CTTGGAAATTCAAAAATTGA+GGG + chr4.2:64454522-64454541 MS.gene71268:CDS 25.0%
! GACATCATAGATAAGTTAAT+GGG + chr4.2:64456150-64456169 MS.gene71268:intron 25.0%
! GCAGATAGAAAATTCAATTT+GGG - chr4.2:64457546-64457565 None:intergenic 25.0%
! GTTAAACAATATAAAGTGGA+CGG + chr4.2:64456116-64456135 MS.gene71268:intron 25.0%
! TAGAACTGAGTTATCTTATA+TGG + chr4.2:64452925-64452944 MS.gene71268:intron 25.0%
! TCTTGGAAATTCAAAAATTG+AGG + chr4.2:64454521-64454540 MS.gene71268:CDS 25.0%
! TGATCTTAGAAAGAAACAAA+TGG - chr4.2:64454388-64454407 None:intergenic 25.0%
! TGCAGATAGAAAATTCAATT+TGG - chr4.2:64457547-64457566 None:intergenic 25.0%
! TGCTAAATTTCAGAAGATAT+TGG - chr4.2:64454218-64454237 None:intergenic 25.0%
! TTAAACAATATAAAGTGGAC+GGG + chr4.2:64456117-64456136 MS.gene71268:intron 25.0%
! TTAACTTATCTATGATGTCT+AGG - chr4.2:64456149-64456168 None:intergenic 25.0%
! TTATATGCAATAATTTCGCT+TGG + chr4.2:64454294-64454313 MS.gene71268:intron 25.0%
! TTATATGGTTTAATGAGATC+CGG + chr4.2:64452940-64452959 MS.gene71268:intron 25.0%
! TTCACAAAAGTAGAACAAAT+CGG - chr4.2:64452866-64452885 None:intergenic 25.0%
! TTCCAATTAACAAGTTATTG+GGG - chr4.2:64456191-64456210 None:intergenic 25.0%
! TTTCTGCAAATTAGAACAAT+GGG - chr4.2:64457594-64457613 None:intergenic 25.0%
!! ACCTTTAATTTACTAGCTAA+CGG + chr4.2:64455469-64455488 MS.gene71268:intron 25.0%
!! ATGAAACATAGCATTTTCAA+TGG + chr4.2:64455803-64455822 MS.gene71268:intron 25.0%
!! GATTGCATAATTCTTTTTAC+AGG + chr4.2:64457384-64457403 MS.gene71268:intron 25.0%
!! GTTCTTAACAATTTTCTGAT+AGG + chr4.2:64456220-64456239 MS.gene71268:intron 25.0%
!! GTTTTCACACATATTATCTA+GGG + chr4.2:64453510-64453529 MS.gene71268:intron 25.0%
!! TCTTTTGTCTTACTTTAAAC+TGG - chr4.2:64453062-64453081 None:intergenic 25.0%
!!! AATTTTAAGTGACTAGTACT+CGG + chr4.2:64455089-64455108 MS.gene71268:intron 25.0%
!!! ATTATTTTTCCTTCTTTTGG+GGG + chr4.2:64457011-64457030 MS.gene71268:intron 25.0%
!!! CAATTTTTTGTTCGTAATTG+TGG - chr4.2:64452832-64452851 None:intergenic 25.0%
!!! CTAACTTTAGAATGTAATGT+GGG - chr4.2:64455504-64455523 None:intergenic 25.0%
!!! GATTTTTTTTTTTGGTCAAG+TGG + chr4.2:64452525-64452544 MS.gene71268:intron 25.0%
!!! TATTAGTTGATGCTACATTT+TGG + chr4.2:64453672-64453691 MS.gene71268:intron 25.0%
!!! TATTTCAGTTTTTCAACAGA+TGG - chr4.2:64453950-64453969 None:intergenic 25.0%
!!! TTTGTTCTACTTTTGTGAAT+TGG + chr4.2:64452867-64452886 MS.gene71268:intron 25.0%
!!! TTTTTAGAACCAGTGAATTT+AGG + chr4.2:64453169-64453188 MS.gene71268:intron 25.0%
AAATTGTTCTATTACTGGTG+TGG + chr4.2:64453568-64453587 MS.gene71268:intron 30.0%
AACGATTAACATCTCATGTA+GGG + chr4.2:64453998-64454017 MS.gene71268:intron 30.0%
AACGCAAATATCAAGAAACT+CGG - chr4.2:64455281-64455300 None:intergenic 30.0%
AAGTAGATGTACTTGATTCA+TGG - chr4.2:64455137-64455156 None:intergenic 30.0%
AATAGATAAGTCACTGAATC+CGG - chr4.2:64452962-64452981 None:intergenic 30.0%
AATTGTTCTATTACTGGTGT+GGG + chr4.2:64453569-64453588 MS.gene71268:intron 30.0%
ACCAGTAATAGAACAATTTG+TGG - chr4.2:64453567-64453586 None:intergenic 30.0%
ACCGTTAGCTAGTAAATTAA+AGG - chr4.2:64455473-64455492 None:intergenic 30.0%
ACGATTATATATGTATGCAG+TGG - chr4.2:64455064-64455083 None:intergenic 30.0%
ACTTACCTATTAAGAGAAGA+TGG - chr4.2:64454774-64454793 None:intergenic 30.0%
ACTTGGAAAAATTGTTCTGA+AGG + chr4.2:64453222-64453241 MS.gene71268:intron 30.0%
AGTGAATTTAGGAAGATGAA+GGG + chr4.2:64453180-64453199 MS.gene71268:intron 30.0%
ATAACAAATCAAGAGTTTGG+AGG - chr4.2:64455431-64455450 None:intergenic 30.0%
ATAATCACCTTGAGTAAGAA+CGG - chr4.2:64454831-64454850 None:intergenic 30.0%
ATCATAGATAAGTTAATGGG+TGG + chr4.2:64456153-64456172 MS.gene71268:intron 30.0%
ATTACTTCTCAAGAGTGATA+GGG + chr4.2:64452450-64452469 MS.gene71268:CDS 30.0%
ATTTATCCTCAACACACATT+AGG - chr4.2:64456661-64456680 None:intergenic 30.0%
CAATTATGTAAACTGCCTTA+TGG + chr4.2:64454950-64454969 MS.gene71268:intron 30.0%
GATCTGATAGAAGAGATAAA+AGG + chr4.2:64456438-64456457 MS.gene71268:CDS 30.0%
GGTTCACGTATTTATGTTAT+AGG + chr4.2:64454062-64454081 MS.gene71268:intron 30.0%
GTTCTATGTTCATTCAAATC+AGG + chr4.2:64456718-64456737 MS.gene71268:intron 30.0%
TAACGATTAACATCTCATGT+AGG + chr4.2:64453997-64454016 MS.gene71268:intron 30.0%
TCTAAAAATACCGAATCAGT+TGG - chr4.2:64453597-64453616 None:intergenic 30.0%
TGATATTCCTCATCAAAACA+TGG + chr4.2:64456072-64456091 MS.gene71268:intron 30.0%
TGTAACAGCTAATATTACTC+AGG + chr4.2:64457240-64457259 MS.gene71268:CDS 30.0%
TTACAGACTTCAATCAGAAT+AGG + chr4.2:64457724-64457743 MS.gene71268:CDS 30.0%
TTACTACTAAGCCTAAGAAA+GGG + chr4.2:64452419-64452438 MS.gene71268:CDS 30.0%
TTATTAAGCAGCGATTCAAT+TGG - chr4.2:64456306-64456325 None:intergenic 30.0%
TTCAGTCAGGTTAAATATCA+AGG + chr4.2:64457691-64457710 MS.gene71268:CDS 30.0%
TTCATCCATCTTCTCTTAAT+AGG + chr4.2:64454766-64454785 MS.gene71268:intron 30.0%
TTCATTCAAATCAGGTTCTT+TGG + chr4.2:64456726-64456745 MS.gene71268:intron 30.0%
TTGATATTTAACCTGACTGA+AGG - chr4.2:64457692-64457711 None:intergenic 30.0%
TTGTTAATTGGAATATTGGC+TGG + chr4.2:64456198-64456217 MS.gene71268:intron 30.0%
! AAGATCCTCTTCTGAAAAAT+CGG - chr4.2:64457488-64457507 None:intergenic 30.0%
! ACGTGATTTTCAATTCTCTT+CGG - chr4.2:64453483-64453502 None:intergenic 30.0%
! GAATCAAGTACATCTACTTT+TGG + chr4.2:64455138-64455157 MS.gene71268:intron 30.0%
! GGTTTTCACACATATTATCT+AGG + chr4.2:64453509-64453528 MS.gene71268:intron 30.0%
! TAATTTGCAGAAATCAGTAG+AGG + chr4.2:64457601-64457620 MS.gene71268:intron 30.0%
! TATATTTAGGGTCAATGTTG+AGG - chr4.2:64454642-64454661 None:intergenic 30.0%
! TGGAATTGGCATGTTATTTA+TGG + chr4.2:64455773-64455792 MS.gene71268:intron 30.0%
! TTTTATCCCTAAGTCTATTG+TGG + chr4.2:64455753-64455772 MS.gene71268:intron 30.0%
!! CTAAGATCAAGTTGATTGTT+TGG + chr4.2:64454399-64454418 MS.gene71268:intron 30.0%
!! GCTAACTTTAGAATGTAATG+TGG - chr4.2:64455505-64455524 None:intergenic 30.0%
!! TTCTACTGTTTCTACAAACT+TGG - chr4.2:64454608-64454627 None:intergenic 30.0%
!! TTTCCTTCATCACACTTTTT+AGG - chr4.2:64454031-64454050 None:intergenic 30.0%
!!! ACTGATTCGGTATTTTTAGA+TGG + chr4.2:64453597-64453616 MS.gene71268:intron 30.0%
!!! AGTAAGAACGGCTATTTTTA+TGG - chr4.2:64454819-64454838 None:intergenic 30.0%
!!! GTAAGAACGGCTATTTTTAT+GGG - chr4.2:64454818-64454837 None:intergenic 30.0%
!!! GTTTTCTTGTTTTTCTGGAT+GGG + chr4.2:64452494-64452513 MS.gene71268:intron 30.0%
!!! TGTTTTCTTGTTTTTCTGGA+TGG + chr4.2:64452493-64452512 MS.gene71268:intron 30.0%
AAAATAGCCGTTCTTACTCA+AGG + chr4.2:64454821-64454840 MS.gene71268:CDS 35.0%
AAAATTATCCGCCAAAGAGA+AGG - chr4.2:64455909-64455928 None:intergenic 35.0%
AACAGGGAAAAGTTGAATAC+AGG + chr4.2:64457422-64457441 MS.gene71268:CDS 35.0%
AAGATATTGAGCAACACCTT+AGG - chr4.2:64456510-64456529 None:intergenic 35.0%
AAGGGAATTAATTGTGTTGG+TGG + chr4.2:64452625-64452644 MS.gene71268:intron 35.0%
AAGTAGGCAATCAAATATGC+TGG - chr4.2:64454334-64454353 None:intergenic 35.0%
AATAACTACAGTTGTGGTTC+TGG + chr4.2:64452564-64452583 MS.gene71268:intron 35.0%
AATGAGGAGGCAAACTATTA+TGG + chr4.2:64455707-64455726 MS.gene71268:intron 35.0%
AATGGTTGTAATTACTAGGC+TGG + chr4.2:64455377-64455396 MS.gene71268:intron 35.0%
AATTGAAAATCACGTGACTG+TGG + chr4.2:64453488-64453507 MS.gene71268:intron 35.0%
ACAGGGAAAAGTTGAATACA+GGG + chr4.2:64457423-64457442 MS.gene71268:CDS 35.0%
ACGATTAACATCTCATGTAG+GGG + chr4.2:64453999-64454018 MS.gene71268:intron 35.0%
AGAGATAAAAGGAGGATACA+TGG + chr4.2:64456449-64456468 MS.gene71268:CDS 35.0%
AGCATATTTGATTGCCTACT+TGG + chr4.2:64454333-64454352 MS.gene71268:intron 35.0%
ATCCGAATTCAGTGACTTTA+AGG - chr4.2:64453039-64453058 None:intergenic 35.0%
ATGCAATAATTTCGCTTGGT+TGG + chr4.2:64454298-64454317 MS.gene71268:intron 35.0%
CAACCTGAAACAATCAACAA+TGG - chr4.2:64457162-64457181 None:intergenic 35.0%
CAGAACCTACTCAAAATTCA+AGG - chr4.2:64455659-64455678 None:intergenic 35.0%
CAGTAGCTAATGACTACAAA+TGG + chr4.2:64453854-64453873 MS.gene71268:intron 35.0%
CAGTGAATTTAGGAAGATGA+AGG + chr4.2:64453179-64453198 MS.gene71268:intron 35.0%
CATTACTTCTCAAGAGTGAT+AGG + chr4.2:64452449-64452468 MS.gene71268:CDS 35.0%
CCAATTCCACAATAGACTTA+GGG - chr4.2:64455762-64455781 None:intergenic 35.0%
CTATTTATTGTCCGTCTCTT+TGG + chr4.2:64456334-64456353 MS.gene71268:intron 35.0%
CTGAAATTTAGCATGAGTGA+GGG + chr4.2:64454225-64454244 MS.gene71268:intron 35.0%
CTGATAGAAGAGATAAAAGG+AGG + chr4.2:64456441-64456460 MS.gene71268:CDS 35.0%
CTTCATCTTCCTAAATTCAC+TGG - chr4.2:64453181-64453200 None:intergenic 35.0%
CTTGAAGACAGCAATTTCTT+TGG + chr4.2:64454564-64454583 MS.gene71268:CDS 35.0%
GCCACAAATTGTTCTATTAC+TGG + chr4.2:64453563-64453582 MS.gene71268:intron 35.0%
GCTATAGCAGAATTCAAACA+GGG + chr4.2:64457406-64457425 MS.gene71268:CDS 35.0%
GTAATAGAACAATTTGTGGC+CGG - chr4.2:64453563-64453582 None:intergenic 35.0%
GTGAATTTAGGAAGATGAAG+GGG + chr4.2:64453181-64453200 MS.gene71268:intron 35.0%
GTTACTACTAAGCCTAAGAA+AGG + chr4.2:64452418-64452437 MS.gene71268:CDS 35.0%
GTTGTGCAAAGTAAAATGGT+AGG - chr4.2:64456275-64456294 None:intergenic 35.0%
TACACAATCACTATCCAAGT+AGG - chr4.2:64454350-64454369 None:intergenic 35.0%
TATGACAGTAGAAGAGTCAA+AGG + chr4.2:64453091-64453110 MS.gene71268:intron 35.0%
TATGTAAACTGCCTTATGGA+TGG + chr4.2:64454954-64454973 MS.gene71268:intron 35.0%
TGTAAAGGGATGTGTATGAA+AGG + chr4.2:64454919-64454938 MS.gene71268:intron 35.0%
TTAATCTAACCTACCAGTCT+AGG + chr4.2:64452290-64452309 MS.gene71268:CDS 35.0%
TTATAGCCAGACTTTCTCTT+TGG + chr4.2:64454156-64454175 MS.gene71268:intron 35.0%
TTATGTTATAGGAGCTTCAG+AGG + chr4.2:64454073-64454092 MS.gene71268:intron 35.0%
! AACTGTTGATGAAGATGAGA+AGG + chr4.2:64452357-64452376 MS.gene71268:CDS 35.0%
! ACCATTTTACTTTGCACAAC+TGG + chr4.2:64456275-64456294 MS.gene71268:intron 35.0%
! ACTCCTAAAAAGTGTGATGA+AGG + chr4.2:64454025-64454044 MS.gene71268:intron 35.0%
! AGGAGAACATGATTTGCAAA+TGG - chr4.2:64456641-64456660 None:intergenic 35.0%
! AGGGAATTAATTGTGTTGGT+GGG + chr4.2:64452626-64452645 MS.gene71268:intron 35.0%
! ATCTCTTTTCTCATTGCGAT+CGG + chr4.2:64453126-64453145 MS.gene71268:intron 35.0%
! CCATTTTACTTTGCACAACT+GGG + chr4.2:64456276-64456295 MS.gene71268:intron 35.0%
! CGATGTAAATATTTTACGGC+AGG + chr4.2:64453316-64453335 MS.gene71268:intron 35.0%
! GTTAGATTAACCGACTTAGT+AGG - chr4.2:64452280-64452299 None:intergenic 35.0%
! TCTGAAATTTAGCATGAGTG+AGG + chr4.2:64454224-64454243 MS.gene71268:intron 35.0%
! TGAAAGTCTAGTTTGAGCTT+GGG + chr4.2:64455986-64456005 MS.gene71268:intron 35.0%
! TTGAAAGTCTAGTTTGAGCT+TGG + chr4.2:64455985-64456004 MS.gene71268:intron 35.0%
! TTGCCATTGTTGATTGTTTC+AGG + chr4.2:64457156-64457175 MS.gene71268:intron 35.0%
!! AAAAGCCGATTTTTCAGAAG+AGG + chr4.2:64457480-64457499 MS.gene71268:CDS 35.0%
!! ATCTACTTTTGGTAGAGTGA+TGG + chr4.2:64455149-64455168 MS.gene71268:intron 35.0%
!! CACCCCAATAACTTGTTAAT+TGG + chr4.2:64456186-64456205 MS.gene71268:intron 35.0%
!! GAAAAATCGGCTTTTCCAAA+AGG - chr4.2:64457475-64457494 None:intergenic 35.0%
!! TACCAAGGATTGGTTACATT+GGG - chr4.2:64453432-64453451 None:intergenic 35.0%
!! TCTACTTTTGGTAGAGTGAT+GGG + chr4.2:64455150-64455169 MS.gene71268:intron 35.0%
!!! GATTCGGTATTTTTAGATGG+AGG + chr4.2:64453600-64453619 MS.gene71268:intron 35.0%
AAAACATGGACGATGGTTGA+TGG + chr4.2:64456086-64456105 MS.gene71268:intron 40.0%
AAAACTTGCAGGAGCAGATT+TGG + chr4.2:64456404-64456423 MS.gene71268:CDS 40.0%
AACACCTTAGGCATCATATC+TGG - chr4.2:64456498-64456517 None:intergenic 40.0%
AAGAGAAGGATCAAAGGAAC+AGG - chr4.2:64455895-64455914 None:intergenic 40.0%
AATGCAGCTTTCCCTTTCTT+AGG - chr4.2:64452433-64452452 None:intergenic 40.0%
ACTCGGTTGTTATGCACAAA+TGG - chr4.2:64455264-64455283 None:intergenic 40.0%
ACTTAGTAGGCTTCAAAACG+AGG - chr4.2:64452267-64452286 None:intergenic 40.0%
AGAAGAAGGAGAAAGGTCTT+GGG - chr4.2:64452209-64452228 None:intergenic 40.0%
AGAATCTCTTAGATCTCACC+TGG - chr4.2:64454504-64454523 None:intergenic 40.0%
AGAGAAGGATCAAAGGAACA+GGG - chr4.2:64455894-64455913 None:intergenic 40.0%
AGGAGGCAAACTATTATGGA+GGG + chr4.2:64455711-64455730 MS.gene71268:intron 40.0%
AGTAGAGGCAAACAAACCAT+CGG + chr4.2:64457616-64457635 MS.gene71268:CDS 40.0%
CAATGTAACCAATCCTTGGT+AGG + chr4.2:64453431-64453450 MS.gene71268:intron 40.0%
CCCAGTTGTGCAAAGTAAAA+TGG - chr4.2:64456279-64456298 None:intergenic 40.0%
CCCTAAGTCTATTGTGGAAT+TGG + chr4.2:64455759-64455778 MS.gene71268:intron 40.0%
CGGTATGTGTTACGTGTATA+CGG - chr4.2:64453463-64453482 None:intergenic 40.0%
CTGAAGTCACCTTGAATTAC+CGG + chr4.2:64453013-64453032 MS.gene71268:intron 40.0%
CTTAGTAGGCTTCAAAACGA+GGG - chr4.2:64452266-64452285 None:intergenic 40.0%
CTTCGTGTGTGGATAACTAT+GGG + chr4.2:64455189-64455208 MS.gene71268:intron 40.0%
GAATACAGGGCAGATAAAAC+AGG + chr4.2:64457436-64457455 MS.gene71268:CDS 40.0%
GCCAATTCCACAATAGACTT+AGG - chr4.2:64455763-64455782 None:intergenic 40.0%
GCTACAAGGTTAGGTATAAG+TGG - chr4.2:64453633-64453652 None:intergenic 40.0%
GGACATGGACATAAGATGAT+AGG + chr4.2:64454975-64454994 MS.gene71268:intron 40.0%
GGCCTTAAAGTCACTGAATT+CGG + chr4.2:64453034-64453053 MS.gene71268:intron 40.0%
GGCTATAGCAGAATTCAAAC+AGG + chr4.2:64457405-64457424 MS.gene71268:intron 40.0%
GGTGAGATCTAAGAGATTCT+TGG + chr4.2:64454504-64454523 MS.gene71268:intron 40.0%
GTAAAATCGAAGACCTAGAC+TGG - chr4.2:64452306-64452325 None:intergenic 40.0%
GTAGTCATTAGCTACTGAAG+AGG - chr4.2:64453851-64453870 None:intergenic 40.0%
GTCCAGTTACTTGGCATTTA+AGG - chr4.2:64455839-64455858 None:intergenic 40.0%
GTCCTTAAATGCCAAGTAAC+TGG + chr4.2:64455834-64455853 MS.gene71268:intron 40.0%
GTTCCTTTGATCCTTCTCTT+TGG + chr4.2:64455895-64455914 MS.gene71268:intron 40.0%
TAATAGGTAAGTCTGCCGAA+GGG + chr4.2:64454782-64454801 MS.gene71268:intron 40.0%
TATGTCCATGTCCATCCATA+AGG - chr4.2:64454968-64454987 None:intergenic 40.0%
TCTGAGCATAGCATCAAGTA+TGG - chr4.2:64456823-64456842 None:intergenic 40.0%
TGATGCTATGCTCAGATTCA+TGG + chr4.2:64456827-64456846 MS.gene71268:intron 40.0%
TGCTGTACGTGAAAATTCTC+AGG - chr4.2:64453747-64453766 None:intergenic 40.0%
TGTTCTCCTAATGTGTGTTG+AGG + chr4.2:64456652-64456671 MS.gene71268:intron 40.0%
TTAATAGGTAAGTCTGCCGA+AGG + chr4.2:64454781-64454800 MS.gene71268:intron 40.0%
TTAGTAGGCTTCAAAACGAG+GGG - chr4.2:64452265-64452284 None:intergenic 40.0%
TTCACTTTCCATGTTTCACC+AGG + chr4.2:64454483-64454502 MS.gene71268:intron 40.0%
TTCGATGAAGCAAAACTTGC+AGG + chr4.2:64456393-64456412 MS.gene71268:CDS 40.0%
TTCTCCAGATATGATGCCTA+AGG + chr4.2:64456491-64456510 MS.gene71268:CDS 40.0%
TTTCCACCAAAGAGAAAGTC+TGG - chr4.2:64454165-64454184 None:intergenic 40.0%
! ACGTCGTCAATCAAAAGTGT+GGG + chr4.2:64452790-64452809 MS.gene71268:intron 40.0%
! ATAGGTCTTTTCTCTCGAAG+TGG + chr4.2:64454993-64455012 MS.gene71268:intron 40.0%
! ATTTAGGGTCAATGTTGAGG+CGG - chr4.2:64454639-64454658 None:intergenic 40.0%
! GGGGGTATAATCCGTAATTT+GGG - chr4.2:64453412-64453431 None:intergenic 40.0%
! GTTGATGAAGATGAGAAGGA+TGG + chr4.2:64452361-64452380 MS.gene71268:CDS 40.0%
! TGGGGGTATAATCCGTAATT+TGG - chr4.2:64453413-64453432 None:intergenic 40.0%
! TTTTGTGCTCACTGCTCATT+TGG + chr4.2:64453909-64453928 MS.gene71268:intron 40.0%
!! AAGTTAGCTGCTCACTTTTG+AGG + chr4.2:64455517-64455536 MS.gene71268:intron 40.0%
!! ACCAAGGATTGGTTACATTG+GGG - chr4.2:64453431-64453450 None:intergenic 40.0%
!! ACGCACCTTGAATTTTGAGT+AGG + chr4.2:64455651-64455670 MS.gene71268:intron 40.0%
!! ACTTTAAGGCCGGTAATTCA+AGG - chr4.2:64453025-64453044 None:intergenic 40.0%
!! AGAAGGTTCTGGGAAAAGAA+CGG - chr4.2:64452234-64452253 None:intergenic 40.0%
!! CTACCAAGGATTGGTTACAT+TGG - chr4.2:64453433-64453452 None:intergenic 40.0%
!! GAATTCAGTGACTTTAAGGC+CGG - chr4.2:64453035-64453054 None:intergenic 40.0%
!!! CGTTTTGAAGCCTACTAAGT+CGG + chr4.2:64452267-64452286 MS.gene71268:CDS 40.0%
AACGGAGAGAAGAAGGAGAA+AGG - chr4.2:64452216-64452235 None:intergenic 45.0%
AACTGCCTTATGGATGGACA+TGG + chr4.2:64454960-64454979 MS.gene71268:intron 45.0%
AAGAAGGAGAAAGGTCTTGG+GGG - chr4.2:64452207-64452226 None:intergenic 45.0%
AATCGAAGACCTAGACTGGT+AGG - chr4.2:64452302-64452321 None:intergenic 45.0%
ACACAGAATCCCCCAAAAGA+AGG - chr4.2:64457023-64457042 None:intergenic 45.0%
ACTAGAATCAAGCGAAGAGC+AGG - chr4.2:64454696-64454715 None:intergenic 45.0%
AGATCTCACCTGGTGAAACA+TGG - chr4.2:64454494-64454513 None:intergenic 45.0%
CACGTCGTCAATCAAAAGTG+TGG + chr4.2:64452789-64452808 MS.gene71268:intron 45.0%
CATCAGAGCGTGACAATACA+GGG + chr4.2:64457075-64457094 MS.gene71268:intron 45.0%
CCTCATCAAAACATGGACGA+TGG + chr4.2:64456079-64456098 MS.gene71268:intron 45.0%
CCTTTGATCCTTCTCTTTGG+CGG + chr4.2:64455898-64455917 MS.gene71268:intron 45.0%
CTCATGCCAAATCCAAAAGC+TGG + chr4.2:64457214-64457233 MS.gene71268:CDS 45.0%
CTTCGCTTGCATATCCTTCA+TGG + chr4.2:64456773-64456792 MS.gene71268:intron 45.0%
GAAGAAGGAGAAAGGTCTTG+GGG - chr4.2:64452208-64452227 None:intergenic 45.0%
GAATTGAACTGCTTCGTGTG+TGG + chr4.2:64455178-64455197 MS.gene71268:intron 45.0%
GAGAAGAAGGAGAAAGGTCT+TGG - chr4.2:64452210-64452229 None:intergenic 45.0%
GAGCATAGCATCAAGTATGG+TGG - chr4.2:64456820-64456839 None:intergenic 45.0%
GAGGAGGCAAACTATTATGG+AGG + chr4.2:64455710-64455729 MS.gene71268:intron 45.0%
GCAAACTATTATGGAGGGTG+AGG + chr4.2:64455716-64455735 MS.gene71268:intron 45.0%
GCTTCGTGTGTGGATAACTA+TGG + chr4.2:64455188-64455207 MS.gene71268:intron 45.0%
GGAAAAGAACGGAGAGAAGA+AGG - chr4.2:64452223-64452242 None:intergenic 45.0%
GGGGTGAGAATAGAAGAAGA+GGG - chr4.2:64452187-64452206 None:intergenic 45.0%
GGGTGAGAATAGAAGAAGAG+GGG - chr4.2:64452186-64452205 None:intergenic 45.0%
GGTTCCAAACCCTCTTTGAA+GGG + chr4.2:64455398-64455417 MS.gene71268:intron 45.0%
GTAAGTACACTGTCAGACAG+TGG + chr4.2:64452748-64452767 MS.gene71268:intron 45.0%
GTAGAGGCAAACAAACCATC+GGG + chr4.2:64457617-64457636 MS.gene71268:CDS 45.0%
GTCAATGTTGAGGCGGAAAT+GGG - chr4.2:64454632-64454651 None:intergenic 45.0%
GTGACAATACAGGGACCAAT+GGG + chr4.2:64457084-64457103 MS.gene71268:intron 45.0%
GTTCGCGACTATGCTTCATA+TGG - chr4.2:64452657-64452676 None:intergenic 45.0%
GTTGCAGATTTCAGCCATGA+AGG - chr4.2:64456790-64456809 None:intergenic 45.0%
TAACCTTGTAGCTGTGTCGT+GGG + chr4.2:64453641-64453660 MS.gene71268:intron 45.0%
TAAGCAGCGATTCAATTGGC+TGG - chr4.2:64456302-64456321 None:intergenic 45.0%
TAGCCAGACTTTCTCTTTGG+TGG + chr4.2:64454159-64454178 MS.gene71268:intron 45.0%
TCAACAATGGCAACTGACTG+AGG - chr4.2:64457149-64457168 None:intergenic 45.0%
TGGTTCCAAACCCTCTTTGA+AGG + chr4.2:64455397-64455416 MS.gene71268:intron 45.0%
TTTCTCATTGCGATCGGAAG+TGG + chr4.2:64453132-64453151 MS.gene71268:intron 45.0%
! ACAGTGCCAGCTTTTGGATT+TGG - chr4.2:64457223-64457242 None:intergenic 45.0%
! ATGGGTTTTCCAGTTCCCTT+CGG - chr4.2:64454800-64454819 None:intergenic 45.0%
! GGAATCGTTCACTTGCCTTT+TGG + chr4.2:64457457-64457476 MS.gene71268:CDS 45.0%
! TGGGTTCATTGAGTTGCCTA+TGG + chr4.2:64455208-64455227 MS.gene71268:intron 45.0%
!! AAACAATGTGATGGGCCCAT+TGG - chr4.2:64457102-64457121 None:intergenic 45.0%
!! CAGTTGTGGTTCTGGTTTCA+TGG + chr4.2:64452572-64452591 MS.gene71268:intron 45.0%
!! CCAAGGATTGGTTACATTGG+GGG - chr4.2:64453430-64453449 None:intergenic 45.0%
!! GAGAAGGATGGTGTTGATGA+TGG + chr4.2:64452373-64452392 MS.gene71268:CDS 45.0%
!! TGTTTCAGGTTGCTAGCCTA+GGG + chr4.2:64457170-64457189 MS.gene71268:intron 45.0%
!! TTGTCCTGGCATTGACATAG+AGG + chr4.2:64455027-64455046 MS.gene71268:intron 45.0%
!! TTGTTTCAGGTTGCTAGCCT+AGG + chr4.2:64457169-64457188 MS.gene71268:intron 45.0%
!! TTTGGTAGAGTGATGGGTCA+CGG + chr4.2:64455156-64455175 MS.gene71268:intron 45.0%
!!! CCATCGTCCATGTTTTGATG+AGG - chr4.2:64456082-64456101 None:intergenic 45.0%
!! AATACATATAATTAAAAAAA+GGG - chr4.2:64455551-64455570 None:intergenic 5.0%
!! ATTATTAGTATTTATTATTA+AGG + chr4.2:64452606-64452625 MS.gene71268:intron 5.0%
!! TTATTAGTATTTATTATTAA+GGG + chr4.2:64452607-64452626 MS.gene71268:intron 5.0%
AACAAACCATCGGGTGCGAA+AGG + chr4.2:64457626-64457645 MS.gene71268:CDS 50.0%
ACGTCCTCTATGTCAATGCC+AGG - chr4.2:64455034-64455053 None:intergenic 50.0%
AGAAGGAGAAAGGTCTTGGG+GGG - chr4.2:64452206-64452225 None:intergenic 50.0%
AGCAACATCAGCAGTGACAG+CGG - chr4.2:64452335-64452354 None:intergenic 50.0%
AGCAAGGCTGTCCAGTTACT+TGG - chr4.2:64455848-64455867 None:intergenic 50.0%
AGGATCCTTGCCCTTCAAAG+AGG - chr4.2:64455411-64455430 None:intergenic 50.0%
ATACCCACGACACAGCTACA+AGG - chr4.2:64453647-64453666 None:intergenic 50.0%
CACGACACAGCTACAAGGTT+AGG - chr4.2:64453642-64453661 None:intergenic 50.0%
CCCCCAATGTAACCAATCCT+TGG + chr4.2:64453427-64453446 MS.gene71268:intron 50.0%
CCGCCAAAGAGAAGGATCAA+AGG - chr4.2:64455901-64455920 None:intergenic 50.0%
CGCACATATGCTCAGCAATG+GGG + chr4.2:64457666-64457685 MS.gene71268:CDS 50.0%
CGTGACAATACAGGGACCAA+TGG + chr4.2:64457083-64457102 MS.gene71268:intron 50.0%
CTAACCTTGTAGCTGTGTCG+TGG + chr4.2:64453640-64453659 MS.gene71268:intron 50.0%
CTAGCCTAGGGAAGATTCTG+GGG + chr4.2:64457182-64457201 MS.gene71268:CDS 50.0%
CTTGCCCTTCAAAGAGGGTT+TGG - chr4.2:64455405-64455424 None:intergenic 50.0%
GCATCAGAGCGTGACAATAC+AGG + chr4.2:64457074-64457093 MS.gene71268:intron 50.0%
GCGCACATATGCTCAGCAAT+GGG + chr4.2:64457665-64457684 MS.gene71268:CDS 50.0%
GGAGAGAGGAAGAAGGTTCT+GGG - chr4.2:64452244-64452263 None:intergenic 50.0%
GGATCCTTGCCCTTCAAAGA+GGG - chr4.2:64455410-64455429 None:intergenic 50.0%
GGATTTGGCATGAGTCCTCT+TGG - chr4.2:64457208-64457227 None:intergenic 50.0%
GGGGGTGAGAATAGAAGAAG+AGG - chr4.2:64452188-64452207 None:intergenic 50.0%
GGTCAATGTTGAGGCGGAAA+TGG - chr4.2:64454633-64454652 None:intergenic 50.0%
GGTGTGGGTACCAACTGATT+CGG + chr4.2:64453584-64453603 MS.gene71268:intron 50.0%
TGCGCACATATGCTCAGCAA+TGG + chr4.2:64457664-64457683 MS.gene71268:CDS 50.0%
TGGTAGACATTGCGTTGTCC+TGG + chr4.2:64455013-64455032 MS.gene71268:intron 50.0%
TGTCAGACAGTGGCATGTGT+CGG + chr4.2:64452758-64452777 MS.gene71268:intron 50.0%
TGTGTTCAGCCAAGAGGTGA+GGG + chr4.2:64453533-64453552 MS.gene71268:intron 50.0%
! CAAACCCTCTTTGAAGGGCA+AGG + chr4.2:64455403-64455422 MS.gene71268:intron 50.0%
! CTTGCAGGAGCAGATTTGGT+AGG + chr4.2:64456408-64456427 MS.gene71268:CDS 50.0%
! GCTAGCCTAGGGAAGATTCT+GGG + chr4.2:64457181-64457200 MS.gene71268:CDS 50.0%
! GCTGTTACAGTGCCAGCTTT+TGG - chr4.2:64457229-64457248 None:intergenic 50.0%
! TGCTAGCCTAGGGAAGATTC+TGG + chr4.2:64457180-64457199 MS.gene71268:CDS 50.0%
AACGAGGGGAGAGAGGAAGA+AGG - chr4.2:64452251-64452270 None:intergenic 55.0%
CTAGGGTGTGTTCAGCCAAG+AGG + chr4.2:64453527-64453546 MS.gene71268:intron 55.0%
GAAGGGGTTCATCGTTCACG+CGG + chr4.2:64453197-64453216 MS.gene71268:intron 55.0%
GCTTCAAAACGAGGGGAGAG+AGG - chr4.2:64452258-64452277 None:intergenic 55.0%
GGGAGAGAGGAAGAAGGTTC+TGG - chr4.2:64452245-64452264 None:intergenic 55.0%
GTAAGTCTGCCGAAGGGAAC+TGG + chr4.2:64454788-64454807 MS.gene71268:CDS 55.0%
GTGTGTTCAGCCAAGAGGTG+AGG + chr4.2:64453532-64453551 MS.gene71268:intron 55.0%
TACACACCTTTCGCACCCGA+TGG - chr4.2:64457635-64457654 None:intergenic 55.0%
TATACGGCTGCTGCCTACCA+AGG - chr4.2:64453447-64453466 None:intergenic 55.0%
TCATCGTTCACGCGGAGACT+TGG + chr4.2:64453205-64453224 MS.gene71268:intron 55.0%
TTGGCCCCAGAATCTTCCCT+AGG - chr4.2:64457189-64457208 None:intergenic 55.0%
CAGCAATGGGGCCTTCAGTC+AGG + chr4.2:64457678-64457697 MS.gene71268:CDS 60.0%
GCCAAGAGGTGAGGGAACTC+CGG + chr4.2:64453541-64453560 MS.gene71268:intron 60.0%
GGCTGCTGCCTACCAAGGAT+TGG - chr4.2:64453442-64453461 None:intergenic 60.0%
! CGGGTGCGAAAGGTGTGTAC+TGG + chr4.2:64457636-64457655 MS.gene71268:CDS 60.0%
!! GGGAAGATTCTGGGGCCAAG+AGG + chr4.2:64457190-64457209 MS.gene71268:CDS 60.0%
GCCGGAGTTCCCTCACCTCT+TGG - chr4.2:64453545-64453564 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 64452133 64457745 64452133 ID=MS.gene71268
chr4.2 mRNA 64452133 64457745 64452133 ID=MS.gene71268.t1;Parent=MS.gene71268
chr4.2 exon 64452133 64452471 64452133 ID=MS.gene71268.t1.exon1;Parent=MS.gene71268.t1
chr4.2 CDS 64452133 64452471 64452133 ID=cds.MS.gene71268.t1;Parent=MS.gene71268.t1
chr4.2 exon 64454505 64454684 64454505 ID=MS.gene71268.t1.exon2;Parent=MS.gene71268.t1
chr4.2 CDS 64454505 64454684 64454505 ID=cds.MS.gene71268.t1;Parent=MS.gene71268.t1
chr4.2 exon 64454788 64454842 64454788 ID=MS.gene71268.t1.exon3;Parent=MS.gene71268.t1
chr4.2 CDS 64454788 64454842 64454788 ID=cds.MS.gene71268.t1;Parent=MS.gene71268.t1
chr4.2 exon 64456385 64456512 64456385 ID=MS.gene71268.t1.exon4;Parent=MS.gene71268.t1
chr4.2 CDS 64456385 64456512 64456385 ID=cds.MS.gene71268.t1;Parent=MS.gene71268.t1
chr4.2 exon 64457178 64457261 64457178 ID=MS.gene71268.t1.exon5;Parent=MS.gene71268.t1
chr4.2 CDS 64457178 64457261 64457178 ID=cds.MS.gene71268.t1;Parent=MS.gene71268.t1
chr4.2 exon 64457406 64457531 64457406 ID=MS.gene71268.t1.exon6;Parent=MS.gene71268.t1
chr4.2 CDS 64457406 64457531 64457406 ID=cds.MS.gene71268.t1;Parent=MS.gene71268.t1
chr4.2 exon 64457611 64457745 64457611 ID=MS.gene71268.t1.exon7;Parent=MS.gene71268.t1
chr4.2 CDS 64457611 64457745 64457611 ID=cds.MS.gene71268.t1;Parent=MS.gene71268.t1
Gene Sequence

>MS.gene71268

ATGGCTTCATGTACAACAACAACTTCATCATCTTCTCTTATGCTAACACACCCCTCTTCTTCTATTCTCACCCCCCAAGACCTTTCTCCTTCTTCTCTCCGTTCTTTTCCCAGAACCTTCTTCCTCTCTCCCCTCGTTTTGAAGCCTACTAAGTCGGTTAATCTAACCTACCAGTCTAGGTCTTCGATTTTACTTGCTTCCGCTGTCACTGCTGATGTTGCTGAAACTGTTGATGAAGATGAGAAGGATGGTGTTGATGATGGTGTTGCTGAAACTGTGACTGTTGTTACTACTAAGCCTAAGAAAGGGAAAGCTGCATTACTTCTCAAGAGTGATAGGGTAATCTTCTTCAAATTTTATTGTTTTCTTGTTTTTCTGGATGGGTTTTTGTTGATTTTTTTTTTTGGTCAAGTGGGTTATTGTTGAATTTTAATAACTACAGTTGTGGTTCTGGTTTCATGGATTATTAGTGTATTATTAGTATTTATTATTAAGGGAATTAATTGTGTTGGTGGGTATGACCATATGAAGCATAGTCGCGAACATCTGACACGATATTGACACGTCGACATAGAATTTGAACAAAATAAAAATGATATCATTGAATGTACTAATGTAAGTACACTGTCAGACAGTGGCATGTGTCGGATGTCAGTCACGTCGTCAATCAAAAGTGTGGGTGCTATAGAGATTGTACCACAATTACGAACAAAAAATTGATATTTGAATACCGATTTGTTCTACTTTTGTGAATTGGTTTTCGCCAATTTTCTAGATAATTTGTTAAAAGCGTAGAACTGAGTTATCTTATATGGTTTAATGAGATCCGGATTCAGTGACTTATCTATTAACTTTCTCTCGTAAAACACACAAAATTACACTGAAGTCACCTTGAATTACCGGCCTTAAAGTCACTGAATTCGGATCCAGTTTAAAGTAAGACAAAAGACTGAGTGTTTATGACAGTAGAAGAGTCAAAGGAAGATGTGTTGAATCTCTTTTCTCATTGCGATCGGAAGTGGAATGATTGAAATTTTTTTTAGAACCAGTGAATTTAGGAAGATGAAGGGGTTCATCGTTCACGCGGAGACTTGGAAAAATTGTTCTGAAGGATAGTTGAAGAAATTGTATGCTTGTTGTTATGATATTATTTGAAAGACTATAAAGATGTGCAATCACCAATCGATGTAAATATTTTACGGCAGGCAATTTATAACTATTGATTTGATAAAATAAGTAAAAAAAAAAAAAAGTAGTAGCAGCATTTTATAATGAACCCAAATTACGGATTATACCCCCAATGTAACCAATCCTTGGTAGGCAGCAGCCGTATACACGTAACACATACCGAAGAGAATTGAAAATCACGTGACTGTGGTTTTCACACATATTATCTAGGGTGTGTTCAGCCAAGAGGTGAGGGAACTCCGGCCACAAATTGTTCTATTACTGGTGTGGGTACCAACTGATTCGGTATTTTTAGATGGAGGACATTAACCACTTATACCTAACCTTGTAGCTGTGTCGTGGGTATTAGACTATTAGTTGATGCTACATTTTGGCAATTGTCTATTTCGTTTTTGACGTAAACATGAAATAACTGTAGTTTTACCTGAGAATTTTCACGTACAGCAATAATAGAATGATATAAGATATAGTGAGAAATTTAAGAAATAATAGAATGATATAAGATATAGTGAGAAATTGTTGGACATCCTCTTCAGTAGCTAATGACTACAAATGGATGAATGCATAACTGTATATCTTAATTTCGTGTTTTGTGCTCACTGCTCATTTGGTAAGCACAAGCTGCTCCATCTGTTGAAAAACTGAAATAGAATGATATTTTAAAATAAACTTTGCTTAACGATTAACATCTCATGTAGGGGAGAACTCCTAAAAAGTGTGATGAAGGAAAAAAAATTCACTGGTTCACGTATTTATGTTATAGGAGCTTCAGAGGATATAAATAATTTCATAAAATATACATGGTTGCATACTCATTTACTTTTATGAGTCATATTTATAGCCAGACTTTCTCTTTGGTGGAAATAAATTGTTCTAATTAACTTCATTTACCTTCCAATATCTTCTGAAATTTAGCATGAGTGAGGGTGAGAGATGCATATAAACAGTAGTTACTGTGCTGTTTGTCCTACCATTATATGCAATAATTTCGCTTGGTTGGTCTTTATATTCCAGCATATTTGATTGCCTACTTGGATAGTGATTGTGTAAATGTTATAAGATAGCCATTTGTTTCTTTCTAAGATCAAGTTGATTGTTTGGATCATTGAATTTTTCATGTTTGGAAAATGTTTATCCATTTATTTTATGAATAATTGTTGTTTTCACTTTCCATGTTTCACCAGGTGAGATCTAAGAGATTCTTGGAAATTCAAAAATTGAGGGAGTTTAAGAAAGAGTACGACTTGAAGACAGCAATTTCTTTGGTAAAAGAAACAGCTAAAACCAAGTTTGTAGAAACAGTAGAAGCCCATTTCCGCCTCAACATTGACCCTAAATATAATGATCAACAGTTAAGAGCTACAGTGAGTCTCCTGCTCTTCGCTTGATTCTAGTATATACATGCACATCGAAAACTATACAATACATGTGCTAATTCTGAGTCTTTCATCCATCTTCTCTTAATAGGTAAGTCTGCCGAAGGGAACTGGAAAACCCATAAAAATAGCCGTTCTTACTCAAGGTGATTATGCTTTCGATTCTCATTTACACTTCTAGTTAATTAAAAGTGTTCTGAGCATGCTAAAAAAACATTTTCTTGTAAAGGGATGTGTATGAAAGGAAATCTATCAATTATGTAAACTGCCTTATGGATGGACATGGACATAAGATGATAGGTCTTTTCTCTCGAAGTGGTAGACATTGCGTTGTCCTGGCATTGACATAGAGGACGTTTCTTTGCCACTGCATACATATATAATCGTATCAGAATTTTAAGTGACTAGTACTCGGTAACGCTTACAAAACTTGAGCTCCATGAATCAAGTACATCTACTTTTGGTAGAGTGATGGGTCACGGAATTGAACTGCTTCGTGTGTGGATAACTATGGGTTCATTGAGTTGCCTATGGTTGTGTATTAACTATTAATCTCTCTGATATCCATTTGTGCATAACAACCGAGTTTCTTGATATTTGCGTTGATAAAAAGTTTATATCTGCAGAAAACTAGCCTACAAAAATTGAAATCGAAAATGTTCATGTCCATATATTTTTAAAATGGTTGTAATTACTAGGCTGGTTCCAAACCCTCTTTGAAGGGCAAGGATCCTCCAAACTCTTGATTTGTTATGATGTACCTACAATATCTACCTTTAATTTACTAGCTAACGGTTGATATTACCCACATTACATTCTAAAGTTAGCTGCTCACTTTTGAGGAGCAATATCCCTTTTTTTAATTATATGTATTGTCTACTTGTAATGCAATTTTTTAGCTAGTGAAGTTATTAAACTATTGTTGAATCTGTTTAGTATGCAATGATGAGATTCACGCACCTTGAATTTTGAGTAGGTTCTGACAGTTTGTTTAAAAAAATATTAGTTAGAATGAGGAGGCAAACTATTATGGAGGGTGAGGTTTATTTTGTTATCTTTTATCCCTAAGTCTATTGTGGAATTGGCATGTTATTTATGGATTTTCTATGAAACATAGCATTTTCAATGGAATTTTCAGTCCTTAAATGCCAAGTAACTGGACAGCCTTGCTGTATTTTTTTTATTTTATCATTTCCCTGTTCCTTTGATCCTTCTCTTTGGCGGATAATTTTATTTTCATTTTTTATTTCTAATTAAATATTCTTTGAATTGCTAATCTTACTTTTTATTGAAAGTCTAGTTTGAGCTTGGGAAGAGATGAGTTATGAAATTTCAAGTATTTTATGCTGATTAGATTGAACATTAAATTGGGTATTGATATTCCTCATCAAAACATGGACGATGGTTGATGGACTTAAAGTTAAACAATATAAAGTGGACGGGATAACACCTAGACATCATAGATAAGTTAATGGGTGGAATGAGTGTTCACCCCAATAACTTGTTAATTGGAATATTGGCTGGTTCTTAACAATTTTCTGATAGGAATAAGATAAGCGAAAAGCAAATTAGTATCCTACCATTTTACTTTGCACAACTGGGCCAGCCAATTGAATCGCTGCTTAATAATTCACAAACTATTTATTGTCCGTCTCTTTGGTTATTCTAATTTATAGTTCATTTTGCAGGTGAAAAGTTCGATGAAGCAAAACTTGCAGGAGCAGATTTGGTAGGTGGAGAGGATCTGATAGAAGAGATAAAAGGAGGATACATGGAATTTGATAAATTAATTGCTTCTCCAGATATGATGCCTAAGGTGTTGCTCAATATCTTCTTCTAATTTGAGTTTTTATTTTCTCTTGTTGAATTTTTTATTCATTTAATAATTTGAGAAAATGATGTAGTATCAATAAAAGATTCAAAAGTTAGTAACTGGTTGAACCATTTGCAAATCATGTTCTCCTAATGTGTGTTGAGGATAAATTTTCCAAGTTGATAAATTTAGTTTCAATTAGTCTAGAGTTCTATGTTCATTCAAATCAGGTTCTTTGGATGTGTCACTAATGCATGCTTAGTCTTCGCTTGCATATCCTTCATGGCTGAAATCTGCAACTAGATTGCCACCATACTTGATGCTATGCTCAGATTCATGGTTGATTTTTCAAAGAGCTTATCAATTAATAAACATAAATGTCAATCAGTTGTTACTAGCATGCTGCAAAGTTTTCTGTTAGTATTGAAGAGTTCCGTTGATTATAGTCATCATTATTATCGTTCTCTCTATTTAATATTGTCAATACAGTTTGCTTAAGTTATTATTTTTCCTTCTTTTGGGGGATTCTGTGTAATGCAAAAGTTGATCATTCTAAACTATTTAGCATCAGAGCGTGACAATACAGGGACCAATGGGCCCATCACATTGTTTTTAGCATTTATTATTTGGATGGAACCTCAGTCAGTTGCCATTGTTGATTGTTTCAGGTTGCTAGCCTAGGGAAGATTCTGGGGCCAAGAGGACTCATGCCAAATCCAAAAGCTGGCACTGTAACAGCTAATATTACTCAGGTGCACAATCAACTACTTTAATTGTTTCTTTTCTTTCTTAGTTCACTTTAACTGTGTGCGCGCACACATGTACACATAGAGAGAACCTTTTCTTTTTATCAAAATGTACATAAACTAACCATGATTGCATAATTCTTTTTACAGGCTATAGCAGAATTCAAACAGGGAAAAGTTGAATACAGGGCAGATAAAACAGGAATCGTTCACTTGCCTTTTGGAAAAGCCGATTTTTCAGAAGAGGATCTTCTTACAAACTTGCTCTCTGCAATAGTATGTTTTACCCCAAATTGAATTTTCTATCTGCAATTCACTCATTGATAAAGTATTAACCCATTGTTCTAATTTGCAGAAATCAGTAGAGGCAAACAAACCATCGGGTGCGAAAGGTGTGTACTGGAAAAGTGCGCACATATGCTCAGCAATGGGGCCTTCAGTCAGGTTAAATATCAAGGAGATGCTTGATTACAGACTTCAATCAGAATAG

Protein sequence

>MS.gene71268.t1

MASCTTTTSSSSLMLTHPSSSILTPQDLSPSSLRSFPRTFFLSPLVLKPTKSVNLTYQSRSSILLASAVTADVAETVDEDEKDGVDDGVAETVTVVTTKPKKGKAALLLKSDRVRSKRFLEIQKLREFKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKIAVLTQGEKFDEAKLAGADLVGGEDLIEEIKGGYMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANITQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLTNLLSAIKSVEANKPSGAKGVYWKSAHICSAMGPSVRLNIKEMLDYRLQSE