AlfalfaGEDB | MS.gene24883

M. sativa cultivar XinJiangDaYe / MS.gene24883

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF03171.23 PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24883.t1	XP_013454720.1	89.2	315	32	2	1	314	1	314	3.40E-160	574.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24883.t1	Q945B6	53.3	306	132	4	8	307	13	313	3.5e-89	329.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24883.t1	A0A072US99	89.2	315	32	2	1	314	1	314	2.5e-160	574.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene24883	-0.86302	3.35E-64	-1.69E-46
MS.gene049181	MS.gene24883	0.812191	4.80E-51	-1.69E-46
MS.gene049217	MS.gene24883	-0.818575	1.82E-52	-1.69E-46
MS.gene049222	MS.gene24883	-0.846742	1.79E-59	-1.69E-46
MS.gene049232	MS.gene24883	-0.84247	2.54E-58	-1.69E-46
MS.gene049259	MS.gene24883	0.855285	6.99E-62	-1.69E-46
MS.gene049281	MS.gene24883	0.865737	4.75E-65	-1.69E-46
MS.gene049285	MS.gene24883	-0.845683	3.49E-59	-1.69E-46
MS.gene049312	MS.gene24883	0.801694	7.98E-49	-1.69E-46
MS.gene049320	MS.gene24883	-0.855334	6.77E-62	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24883.t1	MTR_4g011720	89.206	315	32	2	1	314	1	314	0.0	582
MS.gene24883.t1	MTR_4g011690	83.175	315	52	1	1	314	1	315	0.0	548
MS.gene24883.t1	MTR_4g011720	88.889	234	25	1	1	234	1	233	3.16e-153	430
MS.gene24883.t1	MTR_7g090520	39.185	319	186	7	1	314	1	316	9.53e-80	245
MS.gene24883.t1	MTR_3g108520	38.111	307	178	8	1	299	1	303	3.49e-68	215
MS.gene24883.t1	MTR_1g011600	38.644	295	165	8	1	283	1	291	1.99e-66	210
MS.gene24883.t1	MTR_4g021380	35.216	301	184	7	8	299	6	304	5.39e-60	194
MS.gene24883.t1	MTR_4g021360	34.868	304	188	7	1	298	1	300	1.56e-58	191
MS.gene24883.t1	MTR_6g035160	50.000	136	65	3	164	297	29	163	4.74e-41	141
MS.gene24883.t1	MTR_8g030880	30.094	319	203	8	7	314	8	317	1.20e-38	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24883.t1	AT1G52820	61.635	318	117	3	1	314	1	317	1.57e-146	415
MS.gene24883.t1	AT4G03070	52.922	308	133	4	7	307	12	314	6.40e-115	335
MS.gene24883.t1	AT1G28030	49.689	322	146	8	3	314	7	322	2.98e-103	305
MS.gene24883.t1	AT1G52820	60.759	237	89	2	1	234	1	236	5.99e-102	300
MS.gene24883.t1	AT1G52790	43.831	308	169	3	8	313	4	309	5.59e-94	281
MS.gene24883.t1	AT1G52800	44.013	309	168	4	8	314	9	314	1.15e-91	275
MS.gene24883.t1	AT1G52810	45.048	313	134	6	7	314	10	289	2.53e-86	261
MS.gene24883.t1	AT1G80320	36.508	315	186	6	9	314	9	318	3.79e-66	210
MS.gene24883.t1	AT1G15540	35.780	327	189	9	1	314	4	322	4.41e-61	197
MS.gene24883.t1	AT1G15540	35.780	327	189	9	1	314	1	319	4.42e-61	197

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Find 82 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTCCGGAGGAGCTGG+TGG	0.554268	4.1:-84216800	MS.gene24883:CDS
AAAGCACGACCAATATCTTG+TGG	0.639997	4.1:-84217841	MS.gene24883:CDS
AACCATAAATTCCTTCTCCG+AGG	0.691780	4.1:-84217442	MS.gene24883:CDS
AAGCCTTATAATGGCTATCT+TGG	0.373648	4.1:-84217932	MS.gene24883:CDS
AAGTAAATATGGCTTTGCGA+AGG	0.659208	4.1:+84218011	None:intergenic
AAGTATTATCACGCTCGAGA+AGG	0.535005	4.1:-84216727	MS.gene24883:CDS
AATGAGGCAAGGTATTCAGC+AGG	0.534999	4.1:-84216856	MS.gene24883:CDS
AATTATTGGAAGCTTTAGAA+TGG	0.504433	4.1:+84218156	None:intergenic
ACAAAGTTCTTGTCAGTGTG+TGG	0.594909	4.1:+84217264	None:intergenic
ACCAATATCTTGTGGCCGGA+TGG	0.502522	4.1:-84217833	MS.gene24883:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAAGGCTTAAAGAGTAAA+GGG	+	chr4.1:84218092-84218111	None:intergenic	30.0%
CATATTGTACCAAAATCAAG+TGG	-	chr4.1:84217618-84217637	MS.gene24883:intron	30.0%
CTCTTCTAGTGAAGTAAATA+TGG	+	chr4.1:84216859-84216878	None:intergenic	30.0%
CTTCATTAGTTACCAATTGA+TGG	+	chr4.1:84217774-84217793	None:intergenic	30.0%
GTCTCTTCAAACATCTTTAA+TGG	-	chr4.1:84217148-84217167	MS.gene24883:CDS	30.0%
TCAAAAGGCTTAAAGAGTAA+AGG	+	chr4.1:84218093-84218112	None:intergenic	30.0%
TCCTTAACAAGTTTCATCAT+TGG	-	chr4.1:84217206-84217225	MS.gene24883:CDS	30.0%
TTATAATGTACCCTTCTTTG+GGG	+	chr4.1:84218038-84218057	None:intergenic	30.0%
AACAAGTTTCATCATTGGAG+AGG	-	chr4.1:84217211-84217230	MS.gene24883:CDS	35.0%
AGGAACTCAGCATAATCAAA+AGG	+	chr4.1:84218108-84218127	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	84216687	84218191	84216687	ID=MS.gene24883
chr4.1	mRNA	84216687	84218191	84216687	ID=MS.gene24883.t1;Parent=MS.gene24883
chr4.1	exon	84217818	84218191	84217818	ID=MS.gene24883.t1.exon1;Parent=MS.gene24883.t1
chr4.1	CDS	84217818	84218191	84217818	ID=cds.MS.gene24883.t1;Parent=MS.gene24883.t1
chr4.1	exon	84217143	84217467	84217143	ID=MS.gene24883.t1.exon2;Parent=MS.gene24883.t1
chr4.1	CDS	84217143	84217467	84217143	ID=cds.MS.gene24883.t1;Parent=MS.gene24883.t1
chr4.1	exon	84216687	84216932	84216687	ID=MS.gene24883.t1.exon3;Parent=MS.gene24883.t1
chr4.1	CDS	84216687	84216932	84216687	ID=cds.MS.gene24883.t1;Parent=MS.gene24883.t1

Gene Sequence

>MS.gene24883

ATGGGCTCAGAAACCATTCTAAAGCTTCCAATAATTGACTTCAATAACCTCAACTTGGAAGCCAAAAGTCCCAATTGGGAGTTAGTGAAGTCCCAAGTCTATAAGGCATTAGCAGAGTATGGTTGCTTCGAAGCAATTTTTGATAAAGTTCCTTTACACCTTCGCAAAGCCATATTTACTTCACTAGAAGAGCTCTTTGACCTCCCTTTAGAGACTAAGCTACTCAATGTGTCTAATAAGCCTTATAATGGCTATCTTGGTCAATATCCTGTAGTTCCACTTTATGAGAGGATGGCCATCGACGACGCAAATATCTTAGAGAAAGTAAAAAGCACGACCAATATCTTGTGGCCGGATGGAAACAAAAATTTTAGGTACGTCCTCAACATTATATCTTGATTGAATCATCAGTTAGAACCTAAAGTTGTTAATATTTTAAAATAGTCTCTAACATCGAAAATGTCTCTTCAAACATCTTTAATGGTAGTCTTTAGAGAGTTTTAAACTTCAAAAAGTTTATCCTTAACAAGTTTCATCATTGGAGAGGATTGATGCGACATAAAGTTGAAATGACGAATCATTACAAAAAAAACTCGTCGTTAACAATATCTCAAGTTTCTTCAAAGTGACGTGGCTATAAAACTTTGTAAACTTCATATCCTATTTATCATTGGAACTAATATTTTTTTAATTAGTCCCTTATTAATTTGATTTGCTTTTGCAGTGAAACCATAAATTCCTTCTCCGAGGAGCTAATTGAGTTGGATCAAATTATTAAAAAGATGATTTTGGAAAGTTTAGGTGTTGAAAAGTACATGGAGGAACACATGAACTCAACCAATTACCATCTCAGGGTTATGAAGTACAAAGGCCCTCAAACAAGTGACACAAAACTAGGCCTCAGTCCACACACTGACAAGAACTTTGTGACCATATTGTACCAAAATCAAGTGGAAGGTTTAGAGATGATGACCAAAGATGGACAATGGATAAGCTACAAGTCTTCTTCTTCAGGCAGTTTTGTAGTTGTGATTGGTGATTCTATGCATGTAAATTCCATTCACTATTCCTCATTTATAAATAACCATCAATTGGTAACTAATGAAGTTTTAAATCAGTGTCATGATCGCATAAAAATCTCTGATGTCGCAGCCCAGATCGTGGTCACATGCATTTATAAAACCATGTTGTTGAAATTTATTATTATGGCATTTGTTGAATTATTTTGAAAATTTTCATTTCTCATGTAAATTTTGCAGGCATGGTCAAACGGGAGGCTGCATTCGCCATTTCACCGGGTGATGATGAGTGGGAATGAGGCAAGGTATTCAGCAGGGTTGTTCTCCACCCCCAAAGAAGGGTACATTATAAAAGCTCCGGAGGAGCTGGTGGATGAGGAGCACCCTTTACTCTTTAAGCCTTTTGATTATGCTGAGTTCCTCAAGTATTATCACGCTCGAGAAGGCGTGGGGGCTCGGTCTCTGCGCACTTATTGTGGTGTTTGA

Protein sequence

>MS.gene24883.t1

MGSETILKLPIIDFNNLNLEAKSPNWELVKSQVYKALAEYGCFEAIFDKVPLHLRKAIFTSLEELFDLPLETKLLNVSNKPYNGYLGQYPVVPLYERMAIDDANILEKVKSTTNILWPDGNKNFSETINSFSEELIELDQIIKKMILESLGVEKYMEEHMNSTNYHLRVMKYKGPQTSDTKLGLSPHTDKNFVTILYQNQVEGLEMMTKDGQWISYKSSSSGSFVVVIGDSMHAWSNGRLHSPFHRVMMSGNEARYSAGLFSTPKEGYIIKAPEELVDEEHPLLFKPFDYAEFLKYYHAREGVGARSLRTYCGV