AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24883


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24883.t1 MTR_4g011720 89.206 315 32 2 1 314 1 314 0.0 582
MS.gene24883.t1 MTR_4g011690 83.175 315 52 1 1 314 1 315 0.0 548
MS.gene24883.t1 MTR_4g011720 88.889 234 25 1 1 234 1 233 3.16e-153 430
MS.gene24883.t1 MTR_7g090520 39.185 319 186 7 1 314 1 316 9.53e-80 245
MS.gene24883.t1 MTR_3g108520 38.111 307 178 8 1 299 1 303 3.49e-68 215
MS.gene24883.t1 MTR_1g011600 38.644 295 165 8 1 283 1 291 1.99e-66 210
MS.gene24883.t1 MTR_4g021380 35.216 301 184 7 8 299 6 304 5.39e-60 194
MS.gene24883.t1 MTR_4g021360 34.868 304 188 7 1 298 1 300 1.56e-58 191
MS.gene24883.t1 MTR_6g035160 50.000 136 65 3 164 297 29 163 4.74e-41 141
MS.gene24883.t1 MTR_8g030880 30.094 319 203 8 7 314 8 317 1.20e-38 139
MS.gene24883.t1 MTR_7g077670 29.412 272 186 3 35 301 30 300 1.16e-33 126
MS.gene24883.t1 MTR_5g025090 28.374 289 191 7 9 295 5 279 7.73e-30 115
MS.gene24883.t1 MTR_1g070120 26.578 301 204 6 9 302 38 328 1.11e-29 115
MS.gene24883.t1 MTR_5g027230 29.492 295 189 9 1 293 1 278 2.03e-29 114
MS.gene24883.t1 MTR_5g025050 29.221 308 187 9 9 301 5 296 2.74e-29 114
MS.gene24883.t1 MTR_5g024940 29.831 295 169 10 1 293 1 259 7.82e-29 112
MS.gene24883.t1 MTR_8g024120 27.419 310 194 7 5 300 38 330 1.42e-28 112
MS.gene24883.t1 MTR_1g070135 26.821 302 192 6 9 297 38 323 1.73e-28 112
MS.gene24883.t1 MTR_4g074130 28.669 293 187 10 7 293 38 314 2.87e-27 109
MS.gene24883.t1 MTR_7g102820 28.221 326 181 10 7 301 65 368 5.15e-27 109
MS.gene24883.t1 MTR_3g092890 27.597 308 188 7 9 301 38 325 1.36e-26 107
MS.gene24883.t1 MTR_8g074050 28.155 309 202 10 1 298 44 343 1.84e-26 107
MS.gene24883.t1 MTR_1g070085 27.010 311 209 6 9 311 37 337 2.08e-26 107
MS.gene24883.t1 MTR_1g070085 27.010 311 209 6 9 311 37 337 2.08e-26 107
MS.gene24883.t1 MTR_5g005570 28.231 294 185 11 7 293 35 309 2.16e-26 106
MS.gene24883.t1 MTR_5g059130 27.667 300 191 9 7 294 42 327 1.75e-25 104
MS.gene24883.t1 MTR_4g116010 28.155 309 200 10 3 302 44 339 1.85e-25 104
MS.gene24883.t1 MTR_0009s0050 28.846 312 209 9 2 308 40 343 3.50e-25 103
MS.gene24883.t1 MTR_7g451860 29.097 299 179 10 7 293 39 316 3.52e-25 103
MS.gene24883.t1 MTR_7g047670 29.097 299 179 10 7 293 39 316 3.52e-25 103
MS.gene24883.t1 MTR_0009s0050 28.939 311 208 9 3 308 41 343 3.89e-25 103
MS.gene24883.t1 MTR_8g074070 29.642 307 200 13 1 298 44 343 1.38e-24 102
MS.gene24883.t1 MTR_1g011580 27.068 266 178 6 9 270 63 316 1.81e-24 102
MS.gene24883.t1 MTR_8g033380 28.632 234 159 6 83 311 132 362 1.88e-24 102
MS.gene24883.t1 MTR_5g048570 28.939 311 208 9 3 308 39 341 3.04e-24 101
MS.gene24883.t1 MTR_4g087090 27.759 299 199 8 9 293 30 325 3.43e-24 101
MS.gene24883.t1 MTR_1g070100 28.934 197 137 3 116 311 61 255 3.55e-24 99.4
MS.gene24883.t1 MTR_7g062570 28.526 312 190 12 8 304 54 347 3.59e-24 101
MS.gene24883.t1 MTR_1g070085 29.442 197 136 3 116 311 65 259 3.95e-24 99.4
MS.gene24883.t1 MTR_2g437380 27.987 318 195 8 9 308 50 351 6.24e-24 100
MS.gene24883.t1 MTR_3g117420 29.221 308 200 15 1 298 44 343 6.80e-24 100
MS.gene24883.t1 MTR_7g062580 28.289 304 195 11 8 301 54 344 1.05e-23 100
MS.gene24883.t1 MTR_7g081710 27.796 313 202 9 9 310 49 348 1.76e-23 99.0
MS.gene24883.t1 MTR_0009s0050 32.308 195 128 4 116 308 53 245 2.44e-23 97.1
MS.gene24883.t1 MTR_7g068650 28.710 310 201 10 7 304 52 353 2.62e-23 99.0
MS.gene24883.t1 MTR_8g093930 26.032 315 212 11 7 308 45 351 2.90e-23 98.6
MS.gene24883.t1 MTR_4g100600 27.532 316 191 12 1 294 1 300 2.97e-23 98.2
MS.gene24883.t1 MTR_0009s0050 32.308 195 128 4 116 308 53 245 3.50e-23 96.7
MS.gene24883.t1 MTR_3g096500 24.465 327 210 8 7 311 64 375 5.59e-23 98.2
MS.gene24883.t1 MTR_1g081840 25.879 313 211 10 7 303 51 358 6.07e-23 98.2
MS.gene24883.t1 MTR_5g055680 28.115 313 210 10 2 308 40 343 8.39e-23 97.4
MS.gene24883.t1 MTR_5g032870 26.603 312 198 8 9 303 38 335 1.06e-22 97.1
MS.gene24883.t1 MTR_4g015790 26.814 317 198 11 7 304 60 361 1.19e-22 97.1
MS.gene24883.t1 MTR_5g032880 27.181 298 198 8 9 299 38 323 1.28e-22 98.6
MS.gene24883.t1 MTR_5g032880 27.393 303 207 8 9 303 376 673 5.31e-22 96.7
MS.gene24883.t1 MTR_5g025060 27.937 315 177 12 1 310 1 270 2.23e-22 94.7
MS.gene24883.t1 MTR_5g055900 27.331 311 215 7 2 308 40 343 3.08e-22 95.9
MS.gene24883.t1 MTR_4g100590 26.384 307 201 9 1 294 1 295 5.56e-22 94.4
MS.gene24883.t1 MTR_5g059140 26.829 287 188 8 7 282 40 315 6.04e-22 94.7
MS.gene24883.t1 MTR_1g034140 25.080 311 194 10 6 293 24 318 6.22e-22 94.7
MS.gene24883.t1 MTR_7g062600 27.483 302 207 8 8 304 50 344 8.44e-22 94.7
MS.gene24883.t1 MTR_3g063180 24.299 321 223 9 1 308 34 347 8.54e-22 94.4
MS.gene24883.t1 MTR_1g062110 25.868 317 194 9 7 301 64 361 1.09e-21 94.4
MS.gene24883.t1 MTR_3g072820 27.090 299 196 11 5 293 38 324 1.11e-21 94.0
MS.gene24883.t1 MTR_8g075830 27.465 284 192 7 31 306 59 336 1.13e-21 94.4
MS.gene24883.t1 MTR_3g070860 24.845 322 209 10 7 310 48 354 1.37e-21 94.0
MS.gene24883.t1 MTR_1g070080 25.914 301 206 5 9 302 38 328 1.76e-21 93.6
MS.gene24883.t1 MTR_8g075890 26.733 303 204 10 8 301 38 331 1.96e-21 93.6
MS.gene24883.t1 MTR_6g015950 26.812 276 191 7 32 300 55 326 2.07e-21 93.2
MS.gene24883.t1 MTR_0009s0050 34.969 163 102 4 148 308 3 163 2.68e-21 89.4
MS.gene24883.t1 MTR_1g070110 30.612 196 105 3 116 311 68 232 3.49e-21 90.5
MS.gene24883.t1 MTR_2g102570 25.085 295 200 7 9 294 52 334 3.79e-21 92.8
MS.gene24883.t1 MTR_3g058610 27.839 273 187 8 29 295 57 325 3.83e-21 92.8
MS.gene24883.t1 MTR_7g063730 26.710 307 202 9 8 304 63 356 5.89e-21 92.4
MS.gene24883.t1 MTR_4g123020 28.086 324 190 13 1 302 9 311 6.32e-21 91.7
MS.gene24883.t1 MTR_6g464620 31.217 189 127 3 124 311 187 373 9.64e-21 92.0
MS.gene24883.t1 MTR_4g087110 28.125 288 178 7 28 294 48 327 9.92e-21 91.7
MS.gene24883.t1 MTR_8g074070 28.525 305 187 13 1 298 44 324 1.02e-20 91.3
MS.gene24883.t1 MTR_1g102070 30.366 191 130 3 122 311 180 368 1.17e-20 91.7
MS.gene24883.t1 MTR_2g083030 27.063 303 185 11 2 293 33 310 1.35e-20 90.9
MS.gene24883.t1 MTR_1g034120 25.347 288 188 7 27 294 49 329 1.37e-20 91.3
MS.gene24883.t1 MTR_2g437380 31.633 196 129 4 116 308 64 257 4.17e-20 88.6
MS.gene24883.t1 MTR_2g083000 25.086 291 196 8 8 293 32 305 4.19e-20 89.4
MS.gene24883.t1 MTR_5g082750 25.688 327 206 10 4 310 44 353 4.65e-20 89.7
MS.gene24883.t1 MTR_5g048470 26.688 311 210 10 2 304 46 346 5.02e-20 89.7
MS.gene24883.t1 MTR_5g048550 27.389 314 213 10 1 308 39 343 5.07e-20 89.4
MS.gene24883.t1 MTR_5g022020 26.780 295 202 9 8 295 38 325 5.65e-20 89.4
MS.gene24883.t1 MTR_2g072890 26.557 305 215 7 4 304 47 346 6.87e-20 89.4
MS.gene24883.t1 MTR_1g033810 29.630 297 194 10 4 293 42 330 7.80e-20 89.0
MS.gene24883.t1 MTR_1g034060 25.000 288 189 7 27 294 49 329 9.76e-20 88.6
MS.gene24883.t1 MTR_8g064200 27.541 305 203 10 8 304 56 350 1.28e-19 88.6
MS.gene24883.t1 MTR_7g062550 27.483 302 206 9 8 304 59 352 1.44e-19 88.6
MS.gene24883.t1 MTR_8g064200 27.541 305 203 10 8 304 51 345 1.54e-19 88.2
MS.gene24883.t1 MTR_2g025120 24.746 295 205 8 9 297 4 287 2.83e-19 87.0
MS.gene24883.t1 MTR_0328s0030 27.070 314 216 9 3 311 39 344 3.57e-19 87.0
MS.gene24883.t1 MTR_4g087100 26.502 283 189 9 28 294 48 327 4.98e-19 86.7
MS.gene24883.t1 MTR_8g093980 24.684 316 224 7 7 313 57 367 5.56e-19 86.7
MS.gene24883.t1 MTR_3g088745 25.316 316 209 11 7 303 34 341 6.01e-19 86.7
MS.gene24883.t1 MTR_3g117485 28.333 180 123 5 116 291 86 263 1.22e-18 84.7
MS.gene24883.t1 MTR_4g087140 30.000 180 122 3 118 294 150 328 1.34e-18 85.5
MS.gene24883.t1 MTR_5g055820 27.957 279 192 6 36 308 69 344 1.59e-18 85.1
MS.gene24883.t1 MTR_6g092620 26.780 295 163 10 7 276 1 267 1.83e-18 84.3
MS.gene24883.t1 MTR_5g055690 27.389 314 198 12 9 308 47 344 2.30e-18 84.7
MS.gene24883.t1 MTR_3g043900 25.329 304 212 9 9 308 56 348 2.44e-18 84.7
MS.gene24883.t1 MTR_0009s0480 26.774 310 216 6 3 308 40 342 3.24e-18 84.3
MS.gene24883.t1 MTR_5g055800 28.333 300 201 10 3 297 41 331 3.41e-18 84.3
MS.gene24883.t1 MTR_3g117485 28.333 180 123 5 116 291 158 335 3.74e-18 84.3
MS.gene24883.t1 MTR_4g100590 26.984 252 166 8 56 294 2 248 3.97e-18 82.8
MS.gene24883.t1 MTR_3g045230 24.679 312 207 9 9 309 56 350 4.32e-18 84.0
MS.gene24883.t1 MTR_8g062600 24.845 322 214 12 5 311 63 371 7.83e-18 83.6
MS.gene24883.t1 MTR_7g016090 25.246 305 199 10 5 297 35 322 1.14e-17 82.4
MS.gene24883.t1 MTR_4g115990 26.645 304 194 11 3 302 40 318 1.20e-17 82.4
MS.gene24883.t1 MTR_4g093840 29.744 195 131 5 118 308 169 361 1.30e-17 82.8
MS.gene24883.t1 MTR_2g068950 31.282 195 123 7 125 311 176 367 1.33e-17 82.8
MS.gene24883.t1 MTR_7g016090 25.246 305 199 10 5 297 37 324 1.33e-17 82.4
MS.gene24883.t1 MTR_4g087120 27.632 304 200 11 9 294 26 327 1.85e-17 82.0
MS.gene24883.t1 MTR_8g063070 23.364 321 220 11 5 311 63 371 2.29e-17 82.0
MS.gene24883.t1 MTR_2g033270 27.928 333 182 13 7 312 17 318 2.49e-17 81.6
MS.gene24883.t1 MTR_5g065010 25.402 311 195 10 9 301 39 330 2.85e-17 81.6
MS.gene24883.t1 MTR_2g072910 26.214 309 213 8 3 304 45 345 3.41e-17 81.6
MS.gene24883.t1 MTR_3g040410 25.869 259 176 7 9 261 6 254 4.49e-17 80.5
MS.gene24883.t1 MTR_3g088565 24.590 305 201 10 7 297 1 290 5.74e-17 80.1
MS.gene24883.t1 MTR_7g102720 24.104 307 213 7 9 308 37 330 7.23e-17 80.1
MS.gene24883.t1 MTR_0009s0400 37.705 122 73 3 179 299 11 130 7.92e-17 76.6
MS.gene24883.t1 MTR_3g091360 25.243 309 221 7 4 308 47 349 1.01e-16 80.1
MS.gene24883.t1 MTR_7g056347 22.500 320 228 8 3 311 61 371 1.33e-16 79.7
MS.gene24883.t1 MTR_2g068960 27.692 195 130 5 125 311 176 367 1.54e-16 79.7
MS.gene24883.t1 MTR_5g048740 26.797 306 212 7 8 308 44 342 1.97e-16 79.3
MS.gene24883.t1 MTR_3g026150 25.325 308 209 11 3 301 54 349 2.13e-16 79.3
MS.gene24883.t1 MTR_1g086550 26.460 291 183 9 33 299 36 319 2.18e-16 79.0
MS.gene24883.t1 MTR_0056s0160 27.660 188 132 4 116 301 36 221 3.10e-16 77.0
MS.gene24883.t1 MTR_2g068840 23.567 314 214 9 9 308 55 356 6.18e-16 77.8
MS.gene24883.t1 MTR_3g072810 24.818 274 195 8 28 293 51 321 8.75e-16 77.0
MS.gene24883.t1 MTR_2g069010 27.041 196 130 6 125 311 182 373 9.79e-16 77.4
MS.gene24883.t1 MTR_5g011250 24.590 305 204 9 8 296 46 340 1.12e-15 77.0
MS.gene24883.t1 MTR_5g085330 30.151 199 120 9 118 301 105 299 1.50e-15 76.3
MS.gene24883.t1 MTR_5g048850 29.744 195 133 4 116 308 151 343 1.76e-15 76.6
MS.gene24883.t1 MTR_7g105070 25.705 319 209 12 3 308 53 356 1.79e-15 76.6
MS.gene24883.t1 MTR_3g091350 26.316 304 202 10 1 294 51 342 2.15e-15 76.3
MS.gene24883.t1 MTR_3g026150 25.911 247 173 8 61 301 4 246 2.40e-15 74.7
MS.gene24883.t1 MTR_3g464530 27.698 278 157 11 35 293 49 301 2.91e-15 75.5
MS.gene24883.t1 MTR_6g088665 25.478 314 193 11 9 294 21 321 2.98e-15 75.5
MS.gene24883.t1 MTR_4g087130 31.013 158 108 1 137 293 168 325 3.78e-15 75.5
MS.gene24883.t1 MTR_6g088665 25.397 315 193 11 9 294 21 322 4.03e-15 75.5
MS.gene24883.t1 MTR_0032s0040 23.607 305 212 9 3 297 64 357 5.27e-15 75.1
MS.gene24883.t1 MTR_1g093110 23.442 337 194 12 7 311 68 372 5.82e-15 75.1
MS.gene24883.t1 MTR_4g024660 22.930 314 230 9 5 311 63 371 8.19e-15 74.7
MS.gene24883.t1 MTR_1g048940 25.170 294 190 10 19 296 53 332 9.60e-15 74.3
MS.gene24883.t1 MTR_3g083370 24.430 307 212 10 9 309 4 296 1.37e-14 73.6
MS.gene24883.t1 MTR_7g062560 25.170 294 195 10 9 296 62 336 2.44e-14 73.2
MS.gene24883.t1 MTR_8g102600 24.427 262 168 10 58 294 4 260 2.54e-14 72.4
MS.gene24883.t1 MTR_1g070135 26.339 224 156 5 9 229 38 255 3.85e-14 72.0
MS.gene24883.t1 MTR_8g461330 33.898 118 77 1 182 299 203 319 6.29e-14 71.6
MS.gene24883.t1 MTR_8g009160 22.884 319 214 12 9 311 60 362 9.56e-14 71.2
MS.gene24883.t1 MTR_8g009170 22.611 314 223 11 9 311 60 364 1.11e-13 71.2
MS.gene24883.t1 MTR_2g019370 22.337 291 200 11 29 300 38 321 2.82e-13 69.7
MS.gene24883.t1 MTR_7g045650 28.226 248 157 10 8 246 59 294 4.60e-13 68.9
MS.gene24883.t1 MTR_4g096840 24.113 282 190 8 29 293 39 313 7.86e-13 68.6
MS.gene24883.t1 MTR_7g016080 23.311 296 198 10 8 295 40 314 9.31e-13 68.2
MS.gene24883.t1 MTR_8g028435 20.128 313 230 8 9 311 60 362 1.78e-12 67.8
MS.gene24883.t1 MTR_1g032140 36.000 125 76 4 179 301 231 353 3.52e-12 66.6
MS.gene24883.t1 MTR_4g132770 28.289 152 104 4 149 297 9 158 3.80e-12 63.9
MS.gene24883.t1 MTR_1g070185 23.784 185 136 4 126 308 181 362 3.01e-11 63.9
MS.gene24883.t1 MTR_8g041620 24.483 290 209 7 3 286 62 347 3.07e-11 63.9
MS.gene24883.t1 MTR_7g056393 27.979 193 130 5 126 311 181 371 3.34e-11 63.9
MS.gene24883.t1 MTR_2g069190 21.630 319 217 12 9 311 68 369 3.38e-11 63.9
MS.gene24883.t1 MTR_1g032250 34.109 129 80 5 175 301 235 360 9.74e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24883.t1 AT1G52820 61.635 318 117 3 1 314 1 317 1.57e-146 415
MS.gene24883.t1 AT4G03070 52.922 308 133 4 7 307 12 314 6.40e-115 335
MS.gene24883.t1 AT1G28030 49.689 322 146 8 3 314 7 322 2.98e-103 305
MS.gene24883.t1 AT1G52820 60.759 237 89 2 1 234 1 236 5.99e-102 300
MS.gene24883.t1 AT1G52790 43.831 308 169 3 8 313 4 309 5.59e-94 281
MS.gene24883.t1 AT1G52800 44.013 309 168 4 8 314 9 314 1.15e-91 275
MS.gene24883.t1 AT1G52810 45.048 313 134 6 7 314 10 289 2.53e-86 261
MS.gene24883.t1 AT1G80320 36.508 315 186 6 9 314 9 318 3.79e-66 210
MS.gene24883.t1 AT1G15540 35.780 327 189 9 1 314 4 322 4.41e-61 197
MS.gene24883.t1 AT1G15540 35.780 327 189 9 1 314 1 319 4.42e-61 197
MS.gene24883.t1 AT1G15540 35.780 327 189 9 1 314 1 319 4.42e-61 197
MS.gene24883.t1 AT1G15540 35.780 327 189 9 1 314 8 326 5.61e-61 197
MS.gene24883.t1 AT4G03050 42.308 182 102 1 8 189 7 185 2.75e-44 156
MS.gene24883.t1 AT4G03050 49.275 138 67 3 179 314 271 407 5.04e-41 147
MS.gene24883.t1 AT4G03050 42.308 182 102 1 8 189 7 185 2.75e-44 156
MS.gene24883.t1 AT4G03050 49.275 138 67 3 179 314 271 407 5.04e-41 147
MS.gene24883.t1 AT4G23340 29.836 305 191 9 7 301 8 299 6.18e-33 124
MS.gene24883.t1 AT2G36690 27.974 311 190 9 7 301 59 351 3.71e-27 109
MS.gene24883.t1 AT2G36690 27.974 311 190 9 7 301 59 351 3.71e-27 109
MS.gene24883.t1 AT5G51310 26.266 316 198 9 7 301 3 304 4.90e-25 103
MS.gene24883.t1 AT5G24530 27.097 310 188 8 9 300 38 327 6.05e-25 103
MS.gene24883.t1 AT4G23340 34.426 183 109 5 128 301 1 181 1.17e-24 99.4
MS.gene24883.t1 AT1G50960 29.771 262 172 7 7 264 38 291 5.76e-24 100
MS.gene24883.t1 AT1G78550 26.471 306 214 9 8 308 52 351 2.84e-23 98.6
MS.gene24883.t1 AT4G21690 25.182 274 188 5 35 294 63 333 2.99e-23 98.6
MS.gene24883.t1 AT2G38240 29.487 312 199 13 3 304 42 342 3.44e-23 98.6
MS.gene24883.t1 AT1G14120 27.575 301 201 5 9 303 8 297 1.38e-22 96.3
MS.gene24883.t1 AT1G14120 27.575 301 201 5 9 303 8 297 1.38e-22 96.3
MS.gene24883.t1 AT1G14120 27.575 301 201 5 9 303 8 297 1.38e-22 96.3
MS.gene24883.t1 AT1G15550 26.102 295 198 6 9 295 57 339 1.67e-22 96.7
MS.gene24883.t1 AT5G05600 27.760 317 216 10 3 311 56 367 1.86e-22 96.7
MS.gene24883.t1 AT3G21420 27.469 324 192 11 8 308 54 357 2.32e-22 96.3
MS.gene24883.t1 AT1G78550 27.953 254 175 7 60 308 23 273 5.14e-22 94.0
MS.gene24883.t1 AT5G51810 24.367 316 219 8 7 311 61 367 5.15e-22 95.5
MS.gene24883.t1 AT4G25420 25.316 316 220 9 7 311 59 369 5.20e-22 95.5
MS.gene24883.t1 AT4G21200 27.007 274 177 8 7 272 40 298 1.57e-21 93.6
MS.gene24883.t1 AT3G19010 25.857 321 206 10 8 308 27 335 1.96e-21 93.6
MS.gene24883.t1 AT3G19010 25.857 321 206 10 8 308 27 335 1.96e-21 93.6
MS.gene24883.t1 AT1G80330 25.418 299 199 7 9 295 49 335 4.26e-21 92.4
MS.gene24883.t1 AT3G51240 26.073 303 206 10 8 301 37 330 4.27e-21 92.8
MS.gene24883.t1 AT1G14130 25.773 291 204 4 1 290 1 280 4.89e-21 91.7
MS.gene24883.t1 AT4G16330 26.552 290 195 9 29 308 78 359 5.27e-21 92.4
MS.gene24883.t1 AT3G11180 28.527 319 205 11 7 314 93 399 1.03e-20 92.0
MS.gene24883.t1 AT5G20550 27.597 308 195 11 6 297 42 337 1.13e-20 91.3
MS.gene24883.t1 AT3G13610 27.273 319 201 11 3 308 56 356 1.30e-20 91.3
MS.gene24883.t1 AT4G10490 24.920 313 186 9 9 297 42 329 1.54e-20 90.9
MS.gene24883.t1 AT5G07200 33.540 161 104 3 119 278 177 335 2.76e-20 90.5
MS.gene24883.t1 AT3G11180 28.391 317 202 12 7 311 93 396 3.06e-20 90.5
MS.gene24883.t1 AT3G55970 25.466 322 196 10 9 307 52 352 3.42e-20 90.1
MS.gene24883.t1 AT2G44800 27.742 310 206 10 9 310 52 351 3.81e-20 90.1
MS.gene24883.t1 AT5G63590 27.759 299 191 12 7 293 12 297 8.00e-20 88.2
MS.gene24883.t1 AT1G30040 25.979 281 183 8 29 293 41 312 8.51e-20 88.6
MS.gene24883.t1 AT5G08640 23.469 294 205 8 9 293 43 325 1.49e-19 88.2
MS.gene24883.t1 AT5G08640 23.469 294 205 8 9 293 43 325 1.49e-19 88.2
MS.gene24883.t1 AT5G43935 23.891 293 190 9 8 294 18 283 1.90e-19 87.0
MS.gene24883.t1 AT5G54000 27.273 308 195 10 7 298 44 338 2.66e-19 87.4
MS.gene24883.t1 AT3G51240 30.851 188 124 5 117 301 62 246 3.71e-19 85.9
MS.gene24883.t1 AT1G55290 25.723 311 204 9 9 308 62 356 3.73e-19 87.0
MS.gene24883.t1 AT5G20400 26.230 305 202 11 7 298 43 337 5.32e-19 86.7
MS.gene24883.t1 AT5G63600 24.074 270 191 6 32 294 49 311 6.24e-19 86.3
MS.gene24883.t1 AT4G16330 28.497 193 131 5 117 308 67 253 7.44e-19 84.7
MS.gene24883.t1 AT3G60290 26.994 326 203 11 1 310 45 351 1.22e-18 85.5
MS.gene24883.t1 AT5G54000 31.746 189 120 6 116 298 73 258 1.40e-18 84.3
MS.gene24883.t1 AT5G63600 23.985 271 189 6 32 294 49 310 1.50e-18 85.1
MS.gene24883.t1 AT4G10500 24.038 312 217 7 9 311 44 344 2.05e-18 85.1
MS.gene24883.t1 AT1G60980 29.897 194 130 4 104 296 163 351 2.18e-18 85.1
MS.gene24883.t1 AT2G34555 24.204 314 195 9 9 302 27 317 2.28e-17 81.6
MS.gene24883.t1 AT1G80340 25.850 294 198 6 9 294 50 331 3.21e-17 81.6
MS.gene24883.t1 AT3G19000 25.000 304 206 9 8 294 31 329 7.78e-17 80.5
MS.gene24883.t1 AT1G02400 25.987 304 192 10 9 295 24 311 7.81e-17 80.1
MS.gene24883.t1 AT1G77330 26.621 293 174 11 7 280 1 271 9.13e-17 79.7
MS.gene24883.t1 AT5G07480 28.723 188 125 5 116 296 42 227 1.15e-16 78.6
MS.gene24883.t1 AT1G44090 29.016 193 125 5 122 311 189 372 1.27e-16 80.1
MS.gene24883.t1 AT5G07480 28.723 188 125 5 116 296 151 336 3.06e-16 78.6
MS.gene24883.t1 AT5G43440 23.323 313 199 8 7 299 60 351 4.46e-16 78.2
MS.gene24883.t1 AT3G19010 23.734 316 189 10 8 308 27 305 5.14e-16 77.8
MS.gene24883.t1 AT5G59540 25.962 312 200 11 2 297 54 350 5.74e-16 78.2
MS.gene24883.t1 AT5G59530 25.155 322 209 12 7 311 56 362 6.41e-16 77.8
MS.gene24883.t1 AT2G19590 26.214 309 185 12 4 297 6 286 1.00e-15 76.6
MS.gene24883.t1 AT4G22880 25.163 306 201 11 8 296 46 340 1.07e-15 77.0
MS.gene24883.t1 AT4G22880 25.163 306 201 11 8 296 46 340 1.07e-15 77.0
MS.gene24883.t1 AT4G22880 25.163 306 201 11 8 296 46 340 1.07e-15 77.0
MS.gene24883.t1 AT4G25300 25.413 303 208 10 8 301 51 344 1.10e-15 77.0
MS.gene24883.t1 AT4G25310 26.909 275 183 10 36 301 76 341 1.63e-15 76.6
MS.gene24883.t1 AT5G63595 23.664 262 176 6 9 270 25 262 2.01e-15 75.5
MS.gene24883.t1 AT2G19590 29.592 196 121 7 110 297 85 271 2.32e-15 75.5
MS.gene24883.t1 AT5G43450 24.675 308 199 10 7 299 59 348 2.34e-15 76.3
MS.gene24883.t1 AT1G49390 28.796 191 129 5 116 302 73 260 2.73e-15 75.1
MS.gene24883.t1 AT1G17010 25.962 312 211 8 3 304 48 349 4.27e-15 75.5
MS.gene24883.t1 AT1G06620 27.368 190 126 5 126 308 176 360 5.08e-15 75.1
MS.gene24883.t1 AT1G49390 24.444 315 211 9 2 302 38 339 5.21e-15 75.1
MS.gene24883.t1 AT1G47990 28.042 189 119 4 123 295 114 301 1.33e-14 73.6
MS.gene24883.t1 AT1G03410 29.444 180 120 6 126 300 209 386 1.80e-14 73.9
MS.gene24883.t1 AT1G03410 29.444 180 120 6 126 300 172 349 1.91e-14 73.6
MS.gene24883.t1 AT1G05010 25.633 316 184 12 9 299 4 293 3.16e-14 72.4
MS.gene24883.t1 AT1G78440 25.087 287 179 9 30 293 29 302 3.34e-14 72.4
MS.gene24883.t1 AT4G16765 28.042 189 125 7 117 295 50 237 4.61e-14 71.2
MS.gene24883.t1 AT4G16765 28.042 189 125 7 117 295 50 237 4.61e-14 71.2
MS.gene24883.t1 AT4G16765 28.042 189 125 7 117 295 50 237 4.61e-14 71.2
MS.gene24883.t1 AT3G12900 24.590 305 210 9 12 308 59 351 1.32e-13 70.9
MS.gene24883.t1 AT3G50210 24.062 320 204 11 9 294 8 322 1.46e-13 70.9
MS.gene24883.t1 AT3G50210 24.062 320 204 11 9 294 8 322 1.46e-13 70.9
MS.gene24883.t1 AT3G50210 24.062 320 204 11 9 294 8 322 1.46e-13 70.9
MS.gene24883.t1 AT1G06650 27.869 183 125 6 131 308 184 364 1.64e-13 70.9
MS.gene24883.t1 AT3G61400 28.571 182 123 5 126 301 179 359 1.89e-13 70.5
MS.gene24883.t1 AT1G12010 23.746 299 210 8 4 297 2 287 3.30e-13 69.7
MS.gene24883.t1 AT1G17020 24.521 261 186 7 7 261 51 306 6.17e-13 68.9
MS.gene24883.t1 AT5G05600 28.750 240 158 10 3 234 56 290 1.03e-12 67.8
MS.gene24883.t1 AT3G46490 23.826 298 179 12 6 272 14 294 1.55e-12 67.8
MS.gene24883.t1 AT4G16765 34.483 116 72 2 183 295 77 191 2.22e-12 65.5
MS.gene24883.t1 AT3G49630 23.567 314 207 10 9 294 9 317 2.53e-12 67.0
MS.gene24883.t1 AT4G16765 28.409 176 115 7 117 282 50 224 2.58e-12 65.9
MS.gene24883.t1 AT5G43440 24.291 247 149 7 7 236 60 285 3.19e-12 66.2
MS.gene24883.t1 AT1G04350 23.385 325 215 11 3 311 52 358 4.89e-12 66.2
MS.gene24883.t1 AT3G55970 24.498 249 147 9 9 234 52 282 6.92e-12 65.5
MS.gene24883.t1 AT2G30840 26.816 179 125 6 126 300 173 349 9.78e-12 65.5
MS.gene24883.t1 AT3G49630 22.876 306 208 10 11 294 14 313 2.56e-11 63.9
MS.gene24883.t1 AT5G43450 25.417 240 149 8 7 234 59 280 4.22e-11 63.2
MS.gene24883.t1 AT1G30040 24.887 221 141 8 30 234 42 253 4.60e-11 62.8
MS.gene24883.t1 AT1G03400 26.111 180 126 6 126 300 162 339 5.76e-11 63.2
MS.gene24883.t1 AT5G63580 28.017 232 151 7 9 234 19 240 8.97e-11 61.6

Find 82 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAACCTTCCACTTGATTT+TGG 0.165013 4.1:+84217229 None:intergenic
CTCCTCGGAGAAGGAATTTA+TGG 0.165333 4.1:+84217440 None:intergenic
TTTATAATGTACCCTTCTTT+GGG 0.224285 4.1:+84216820 None:intergenic
CATAACCCTGAGATGGTAAT+TGG 0.227792 4.1:+84217332 None:intergenic
GCTTATCCATTGTCCATCTT+TGG 0.274641 4.1:+84217197 None:intergenic
TCCATCCGGCCACAAGATAT+TGG 0.302776 4.1:+84217832 None:intergenic
TAACTCCCAATTGGGACTTT+TGG 0.307103 4.1:+84218108 None:intergenic
CTCTTCTAGTGAAGTAAATA+TGG 0.310135 4.1:+84218000 None:intergenic
TGACCAAGATAGCCATTATA+AGG 0.313558 4.1:+84217929 None:intergenic
AGCTACAAGTCTTCTTCTTC+AGG 0.328794 4.1:-84217177 MS.gene24883:CDS
AGGTTATTGAAGTCAATTAT+TGG 0.351381 4.1:+84218142 None:intergenic
GTGTCTAATAAGCCTTATAA+TGG 0.359164 4.1:-84217941 MS.gene24883:CDS
AGTGAAGTCCCAAGTCTATA+AGG 0.368829 4.1:-84218086 MS.gene24883:CDS
AAGCCTTATAATGGCTATCT+TGG 0.373648 4.1:-84217932 MS.gene24883:CDS
CTCATCATCACCCGGTGAAA+TGG 0.378285 4.1:+84216883 None:intergenic
GGACTTCACTAACTCCCAAT+TGG 0.386844 4.1:+84218099 None:intergenic
GGCTGCATTCGCCATTTCAC+CGG 0.398369 4.1:-84216894 MS.gene24883:CDS
TATAAGGCATTAGCAGAGTA+TGG 0.406334 4.1:-84218070 MS.gene24883:CDS
TCCTCATCCACCAGCTCCTC+CGG 0.417316 4.1:+84216793 None:intergenic
TGGAAGCCAAAAGTCCCAAT+TGG 0.421664 4.1:-84218114 MS.gene24883:CDS
CAAAAGGCTTAAAGAGTAAA+GGG 0.424456 4.1:+84216767 None:intergenic
ACTCAACCAATTACCATCTC+AGG 0.428477 4.1:-84217338 MS.gene24883:CDS
CTGCTAATGCCTTATAGACT+TGG 0.437929 4.1:+84218077 None:intergenic
TCCGGAGGAGCTGGTGGATG+AGG 0.453378 4.1:-84216794 MS.gene24883:CDS
TTGAGTAGCTTAGTCTCTAA+AGG 0.454248 4.1:+84217965 None:intergenic
TCAAAAGGCTTAAAGAGTAA+AGG 0.456074 4.1:+84216766 None:intergenic
CTCTCATAAAGTGGAACTAC+AGG 0.468829 4.1:+84217902 None:intergenic
TATAAAAGCTCCGGAGGAGC+TGG 0.478262 4.1:-84216803 MS.gene24883:CDS
CTCAATTAGCTCCTCGGAGA+AGG 0.480469 4.1:+84217431 None:intergenic
GACTTCACTAACTCCCAATT+GGG 0.486736 4.1:+84218100 None:intergenic
TGAGTAGCTTAGTCTCTAAA+GGG 0.493999 4.1:+84217966 None:intergenic
CTCCGAGGAGCTAATTGAGT+TGG 0.496308 4.1:-84217427 MS.gene24883:CDS
AGGAACTCAGCATAATCAAA+AGG 0.497152 4.1:+84216751 None:intergenic
CGGTCTCTGCGCACTTATTG+TGG 0.497310 4.1:-84216694 MS.gene24883:CDS
ATCCAACTCAATTAGCTCCT+CGG 0.499257 4.1:+84217425 None:intergenic
ATGGCTTTGCGAAGGTGTAA+AGG 0.500853 4.1:+84218019 None:intergenic
ACCAATATCTTGTGGCCGGA+TGG 0.502522 4.1:-84217833 MS.gene24883:CDS
AATTATTGGAAGCTTTAGAA+TGG 0.504433 4.1:+84218156 None:intergenic
GGAAGCCAAAAGTCCCAATT+GGG 0.510341 4.1:-84218113 MS.gene24883:CDS
TGACTTCAATAACCTCAACT+TGG 0.518399 4.1:-84218134 MS.gene24883:CDS
AGGGTACATTATAAAAGCTC+CGG 0.518778 4.1:-84216812 MS.gene24883:CDS
TAAGATATTTGCGTCGTCGA+TGG 0.523872 4.1:+84217874 None:intergenic
TTTAGGTGTTGAAAAGTACA+TGG 0.523921 4.1:-84217373 MS.gene24883:CDS
GCTGCATTCGCCATTTCACC+GGG 0.528558 4.1:-84216893 MS.gene24883:CDS
AATGAGGCAAGGTATTCAGC+AGG 0.534999 4.1:-84216856 MS.gene24883:CDS
AAGTATTATCACGCTCGAGA+AGG 0.535005 4.1:-84216727 MS.gene24883:CDS
ATGGCCATCCTCTCATAAAG+TGG 0.541638 4.1:+84217893 None:intergenic
CACGACCAATATCTTGTGGC+CGG 0.542340 4.1:-84217837 MS.gene24883:CDS
TTATAATGTACCCTTCTTTG+GGG 0.546557 4.1:+84216821 None:intergenic
CAAACAAGTGACACAAAACT+AGG 0.550916 4.1:-84217294 MS.gene24883:CDS
AAAAGCTCCGGAGGAGCTGG+TGG 0.554268 4.1:-84216800 MS.gene24883:CDS
TTGTACCAAAATCAAGTGGA+AGG 0.554694 4.1:-84217234 MS.gene24883:CDS
TTAGAGATGATGACCAAAGA+TGG 0.562948 4.1:-84217210 MS.gene24883:CDS
TGTACTTCATAACCCTGAGA+TGG 0.565517 4.1:+84217325 None:intergenic
TATAATGTACCCTTCTTTGG+GGG 0.570484 4.1:+84216822 None:intergenic
TGCTAATGCCTTATAGACTT+GGG 0.570558 4.1:+84218078 None:intergenic
TATCACGCTCGAGAAGGCGT+GGG 0.579263 4.1:-84216721 MS.gene24883:CDS
CTGTAGTTCCACTTTATGAG+AGG 0.580451 4.1:-84217901 MS.gene24883:CDS
AGTTCCACTTTATGAGAGGA+TGG 0.582196 4.1:-84217897 MS.gene24883:CDS
CATATTGTACCAAAATCAAG+TGG 0.585592 4.1:-84217238 MS.gene24883:CDS
TTATCACGCTCGAGAAGGCG+TGG 0.587856 4.1:-84216722 MS.gene24883:CDS
TTTCACCGGGTGATGATGAG+TGG 0.590400 4.1:-84216880 MS.gene24883:CDS
CATTCCCACTCATCATCACC+CGG 0.593548 4.1:+84216875 None:intergenic
ACAAAGTTCTTGTCAGTGTG+TGG 0.594909 4.1:+84217264 None:intergenic
ATCACGCTCGAGAAGGCGTG+GGG 0.596810 4.1:-84216720 MS.gene24883:CDS
CTCGAGCGTGATAATACTTG+AGG 0.604032 4.1:+84216731 None:intergenic
CTCAACCAATTACCATCTCA+GGG 0.604591 4.1:-84217337 MS.gene24883:CDS
TGCAGGCATGGTCAAACGGG+AGG 0.605635 4.1:-84216915 MS.gene24883:intron
TTCACCGGGTGATGATGAGT+GGG 0.609819 4.1:-84216879 MS.gene24883:CDS
TGATGACCAAAGATGGACAA+TGG 0.610775 4.1:-84217203 MS.gene24883:CDS
GGTGATGATGAGTGGGAATG+AGG 0.615235 4.1:-84216872 MS.gene24883:CDS
TCTTGTCAGTGTGTGGACTG+AGG 0.624048 4.1:+84217271 None:intergenic
CTCAGGGTTATGAAGTACAA+AGG 0.637097 4.1:-84217321 MS.gene24883:CDS
AAAGCACGACCAATATCTTG+TGG 0.639997 4.1:-84217841 MS.gene24883:CDS
TGATGAGTGGGAATGAGGCA+AGG 0.659052 4.1:-84216867 MS.gene24883:CDS
AAGTAAATATGGCTTTGCGA+AGG 0.659208 4.1:+84218011 None:intergenic
GTACATTATAAAAGCTCCGG+AGG 0.668840 4.1:-84216809 MS.gene24883:CDS
ATGAGGCAAGGTATTCAGCA+GGG 0.682721 4.1:-84216855 MS.gene24883:CDS
AACCATAAATTCCTTCTCCG+AGG 0.691780 4.1:-84217442 MS.gene24883:CDS
GTAGCTTAGTCTCTAAAGGG+AGG 0.695642 4.1:+84217969 None:intergenic
TCACGCTCGAGAAGGCGTGG+GGG 0.720680 4.1:-84216719 MS.gene24883:CDS
AGGTGTTGAAAAGTACATGG+AGG 0.723372 4.1:-84217370 MS.gene24883:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTAAAAAGATGATTT+TGG - chr4.1:84217456-84217475 MS.gene24883:intron 10.0%
!!! TTTAAAATATTAACAACTTT+AGG + chr4.1:84217107-84217126 None:intergenic 10.0%
!! AAAAGCAAATCAAATTAATA+AGG + chr4.1:84217387-84217406 None:intergenic 15.0%
!! AAAGCAAATCAAATTAATAA+GGG + chr4.1:84217386-84217405 None:intergenic 15.0%
!! AATAATAAATTTCAACAACA+TGG + chr4.1:84217872-84217891 None:intergenic 15.0%
!! ATTTATAAATAACCATCAAT+TGG - chr4.1:84217759-84217778 MS.gene24883:intron 15.0%
!! GTTGTTGAAATTTATTATTA+TGG - chr4.1:84217873-84217892 MS.gene24883:CDS 15.0%
!! TATTAGTTCCAATGATAAAT+AGG + chr4.1:84217349-84217368 None:intergenic 20.0%
!!! TTGATGGTTATTTATAAATG+AGG + chr4.1:84217758-84217777 None:intergenic 20.0%
! AGGTTATTGAAGTCAATTAT+TGG + chr4.1:84216717-84216736 None:intergenic 25.0%
! CTTCATATCCTATTTATCAT+TGG - chr4.1:84217338-84217357 MS.gene24883:CDS 25.0%
! TATAAATGAGGAATAGTGAA+TGG + chr4.1:84217746-84217765 None:intergenic 25.0%
! TCAATCAAGATATAATGTTG+AGG + chr4.1:84217070-84217089 None:intergenic 25.0%
! TTTATAATGTACCCTTCTTT+GGG + chr4.1:84218039-84218058 None:intergenic 25.0%
!! ATTTCTCATGTAAATTTTGC+AGG - chr4.1:84217924-84217943 MS.gene24883:CDS 25.0%
!! TTTTATAATGTACCCTTCTT+TGG + chr4.1:84218040-84218059 None:intergenic 25.0%
!!! AAGATGATTTTGGAAAGTTT+AGG - chr4.1:84217466-84217485 MS.gene24883:intron 25.0%
!!! AATTATTGGAAGCTTTAGAA+TGG + chr4.1:84216703-84216722 None:intergenic 25.0%
!!! CTAAAATTTTTGTTTCCATC+CGG + chr4.1:84217041-84217060 None:intergenic 25.0%
CAAAAGGCTTAAAGAGTAAA+GGG + chr4.1:84218092-84218111 None:intergenic 30.0%
CATATTGTACCAAAATCAAG+TGG - chr4.1:84217618-84217637 MS.gene24883:intron 30.0%
CTCTTCTAGTGAAGTAAATA+TGG + chr4.1:84216859-84216878 None:intergenic 30.0%
CTTCATTAGTTACCAATTGA+TGG + chr4.1:84217774-84217793 None:intergenic 30.0%
GTCTCTTCAAACATCTTTAA+TGG - chr4.1:84217148-84217167 MS.gene24883:CDS 30.0%
TCAAAAGGCTTAAAGAGTAA+AGG + chr4.1:84218093-84218112 None:intergenic 30.0%
TCCTTAACAAGTTTCATCAT+TGG - chr4.1:84217206-84217225 MS.gene24883:CDS 30.0%
TTATAATGTACCCTTCTTTG+GGG + chr4.1:84218038-84218057 None:intergenic 30.0%
! CGGATGGAAACAAAAATTTT+AGG - chr4.1:84217039-84217058 MS.gene24883:intron 30.0%
! GTGTCTAATAAGCCTTATAA+TGG - chr4.1:84216915-84216934 MS.gene24883:intron 30.0%
!! CACTTGATTTTGGTACAATA+TGG + chr4.1:84217620-84217639 None:intergenic 30.0%
!! TCCAATGATGAAACTTGTTA+AGG + chr4.1:84217210-84217229 None:intergenic 30.0%
!! TTTAGGTGTTGAAAAGTACA+TGG - chr4.1:84217483-84217502 MS.gene24883:intron 30.0%
AACAAGTTTCATCATTGGAG+AGG - chr4.1:84217211-84217230 MS.gene24883:CDS 35.0%
AGGAACTCAGCATAATCAAA+AGG + chr4.1:84218108-84218127 None:intergenic 35.0%
AGGGTACATTATAAAAGCTC+CGG - chr4.1:84218044-84218063 MS.gene24883:CDS 35.0%
CAAACAAGTGACACAAAACT+AGG - chr4.1:84217562-84217581 MS.gene24883:intron 35.0%
TATAATGTACCCTTCTTTGG+GGG + chr4.1:84218037-84218056 None:intergenic 35.0%
TGACCAAGATAGCCATTATA+AGG + chr4.1:84216930-84216949 None:intergenic 35.0%
TGACTTCAATAACCTCAACT+TGG - chr4.1:84216722-84216741 MS.gene24883:CDS 35.0%
TGAGTAGCTTAGTCTCTAAA+GGG + chr4.1:84216893-84216912 None:intergenic 35.0%
TGCTAATGCCTTATAGACTT+GGG + chr4.1:84216781-84216800 None:intergenic 35.0%
TTAGAGATGATGACCAAAGA+TGG - chr4.1:84217646-84217665 MS.gene24883:intron 35.0%
TTGAGTAGCTTAGTCTCTAA+AGG + chr4.1:84216894-84216913 None:intergenic 35.0%
TTGTACCAAAATCAAGTGGA+AGG - chr4.1:84217622-84217641 MS.gene24883:intron 35.0%
! AAGCCTTATAATGGCTATCT+TGG - chr4.1:84216924-84216943 MS.gene24883:intron 35.0%
! AAGTAAATATGGCTTTGCGA+AGG + chr4.1:84216848-84216867 None:intergenic 35.0%
! CTAAACCTTCCACTTGATTT+TGG + chr4.1:84217630-84217649 None:intergenic 35.0%
! TATAAGGCATTAGCAGAGTA+TGG - chr4.1:84216786-84216805 MS.gene24883:CDS 35.0%
! TCATGTAAATTTTGCAGGCA+TGG - chr4.1:84217929-84217948 MS.gene24883:CDS 35.0%
!!! AGTTTTGTGTCACTTGTTTG+AGG + chr4.1:84217562-84217581 None:intergenic 35.0%
!!! GTTTTGTGTCACTTGTTTGA+GGG + chr4.1:84217561-84217580 None:intergenic 35.0%
AAAGCACGACCAATATCTTG+TGG - chr4.1:84217015-84217034 MS.gene24883:intron 40.0%
AACCATAAATTCCTTCTCCG+AGG - chr4.1:84217414-84217433 MS.gene24883:CDS 40.0%
AAGTATTATCACGCTCGAGA+AGG - chr4.1:84218129-84218148 MS.gene24883:CDS 40.0%
ACAAAGTTCTTGTCAGTGTG+TGG + chr4.1:84217595-84217614 None:intergenic 40.0%
ACTCAACCAATTACCATCTC+AGG - chr4.1:84217518-84217537 MS.gene24883:intron 40.0%
AGCTACAAGTCTTCTTCTTC+AGG - chr4.1:84217679-84217698 MS.gene24883:intron 40.0%
AGTGAAGTCCCAAGTCTATA+AGG - chr4.1:84216770-84216789 MS.gene24883:CDS 40.0%
AGTTCCACTTTATGAGAGGA+TGG - chr4.1:84216959-84216978 MS.gene24883:intron 40.0%
ATCCAACTCAATTAGCTCCT+CGG + chr4.1:84217434-84217453 None:intergenic 40.0%
CAAGTTTCTTCAAAGTGACG+TGG - chr4.1:84217298-84217317 MS.gene24883:CDS 40.0%
CATAACCCTGAGATGGTAAT+TGG + chr4.1:84217527-84217546 None:intergenic 40.0%
CTCAACCAATTACCATCTCA+GGG - chr4.1:84217519-84217538 MS.gene24883:intron 40.0%
CTCAGGGTTATGAAGTACAA+AGG - chr4.1:84217535-84217554 MS.gene24883:intron 40.0%
CTCTCATAAAGTGGAACTAC+AGG + chr4.1:84216957-84216976 None:intergenic 40.0%
CTGCTAATGCCTTATAGACT+TGG + chr4.1:84216782-84216801 None:intergenic 40.0%
CTGTAGTTCCACTTTATGAG+AGG - chr4.1:84216955-84216974 MS.gene24883:intron 40.0%
GACTTCACTAACTCCCAATT+GGG + chr4.1:84216759-84216778 None:intergenic 40.0%
GCTTATCCATTGTCCATCTT+TGG + chr4.1:84217662-84217681 None:intergenic 40.0%
GTACATTATAAAAGCTCCGG+AGG - chr4.1:84218047-84218066 MS.gene24883:CDS 40.0%
TAAGATATTTGCGTCGTCGA+TGG + chr4.1:84216985-84217004 None:intergenic 40.0%
TGATGACCAAAGATGGACAA+TGG - chr4.1:84217653-84217672 MS.gene24883:intron 40.0%
TGTACTTCATAACCCTGAGA+TGG + chr4.1:84217534-84217553 None:intergenic 40.0%
! ATTTTGCAGGCATGGTCAAA+CGG - chr4.1:84217937-84217956 MS.gene24883:CDS 40.0%
! TAACTCCCAATTGGGACTTT+TGG + chr4.1:84216751-84216770 None:intergenic 40.0%
!! AGGTGTTGAAAAGTACATGG+AGG - chr4.1:84217486-84217505 MS.gene24883:intron 40.0%
!! GGCAGTTTTGTAGTTGTGAT+TGG - chr4.1:84217700-84217719 MS.gene24883:intron 40.0%
AAATGCATGTGACCACGATC+TGG + chr4.1:84217843-84217862 None:intergenic 45.0%
AATGCATGTGACCACGATCT+GGG + chr4.1:84217842-84217861 None:intergenic 45.0%
ATGGCCATCCTCTCATAAAG+TGG + chr4.1:84216966-84216985 None:intergenic 45.0%
CTCCTCGGAGAAGGAATTTA+TGG + chr4.1:84217419-84217438 None:intergenic 45.0%
CTCGAGCGTGATAATACTTG+AGG + chr4.1:84218128-84218147 None:intergenic 45.0%
GGAAGCCAAAAGTCCCAATT+GGG - chr4.1:84216743-84216762 MS.gene24883:CDS 45.0%
GGACTTCACTAACTCCCAAT+TGG + chr4.1:84216760-84216779 None:intergenic 45.0%
TGGAAGCCAAAAGTCCCAAT+TGG - chr4.1:84216742-84216761 MS.gene24883:CDS 45.0%
! AATGAGGCAAGGTATTCAGC+AGG - chr4.1:84218000-84218019 MS.gene24883:CDS 45.0%
! ATGAGGCAAGGTATTCAGCA+GGG - chr4.1:84218001-84218020 MS.gene24883:CDS 45.0%
! ATGGCTTTGCGAAGGTGTAA+AGG + chr4.1:84216840-84216859 None:intergenic 45.0%
! GTAGCTTAGTCTCTAAAGGG+AGG + chr4.1:84216890-84216909 None:intergenic 45.0%
! TTTTGCAGGCATGGTCAAAC+GGG - chr4.1:84217938-84217957 MS.gene24883:CDS 45.0%
!!! GACTTTTGGCTTCCAAGTTG+AGG + chr4.1:84216737-84216756 None:intergenic 45.0%
ACCAATATCTTGTGGCCGGA+TGG - chr4.1:84217023-84217042 MS.gene24883:intron 50.0%
CACGACCAATATCTTGTGGC+CGG - chr4.1:84217019-84217038 MS.gene24883:intron 50.0%
CATTCCCACTCATCATCACC+CGG + chr4.1:84217984-84218003 None:intergenic 50.0%
CTCAATTAGCTCCTCGGAGA+AGG + chr4.1:84217428-84217447 None:intergenic 50.0%
CTCATCATCACCCGGTGAAA+TGG + chr4.1:84217976-84217995 None:intergenic 50.0%
CTCCGAGGAGCTAATTGAGT+TGG - chr4.1:84217429-84217448 MS.gene24883:CDS 50.0%
TATAAAAGCTCCGGAGGAGC+TGG - chr4.1:84218053-84218072 MS.gene24883:CDS 50.0%
TCCATCCGGCCACAAGATAT+TGG + chr4.1:84217027-84217046 None:intergenic 50.0%
TGATGAGTGGGAATGAGGCA+AGG - chr4.1:84217989-84218008 MS.gene24883:CDS 50.0%
TGTTCTCCACCCCCAAAGAA+GGG - chr4.1:84218025-84218044 MS.gene24883:CDS 50.0%
TTGTTCTCCACCCCCAAAGA+AGG - chr4.1:84218024-84218043 MS.gene24883:CDS 50.0%
! AATGTACCCTTCTTTGGGGG+TGG + chr4.1:84218034-84218053 None:intergenic 50.0%
! GGTGATGATGAGTGGGAATG+AGG - chr4.1:84217984-84218003 MS.gene24883:CDS 50.0%
! TCTTGTCAGTGTGTGGACTG+AGG + chr4.1:84217588-84217607 None:intergenic 50.0%
! TTCACCGGGTGATGATGAGT+GGG - chr4.1:84217977-84217996 MS.gene24883:CDS 50.0%
! TTTCACCGGGTGATGATGAG+TGG - chr4.1:84217976-84217995 MS.gene24883:CDS 50.0%
CGGTCTCTGCGCACTTATTG+TGG - chr4.1:84218162-84218181 MS.gene24883:CDS 55.0%
GCTGCATTCGCCATTTCACC+GGG - chr4.1:84217963-84217982 MS.gene24883:CDS 55.0%
GGCTGCATTCGCCATTTCAC+CGG - chr4.1:84217962-84217981 MS.gene24883:CDS 55.0%
TTATCACGCTCGAGAAGGCG+TGG - chr4.1:84218134-84218153 MS.gene24883:CDS 55.0%
! TATCACGCTCGAGAAGGCGT+GGG - chr4.1:84218135-84218154 MS.gene24883:CDS 55.0%
AAAAGCTCCGGAGGAGCTGG+TGG - chr4.1:84218056-84218075 MS.gene24883:CDS 60.0%
TCCTCATCCACCAGCTCCTC+CGG + chr4.1:84218066-84218085 None:intergenic 60.0%
TGATGTCGCAGCCCAGATCG+TGG - chr4.1:84217828-84217847 MS.gene24883:CDS 60.0%
TGCAGGCATGGTCAAACGGG+AGG - chr4.1:84217941-84217960 MS.gene24883:CDS 60.0%
! ATCACGCTCGAGAAGGCGTG+GGG - chr4.1:84218136-84218155 MS.gene24883:CDS 60.0%
! TCACGCTCGAGAAGGCGTGG+GGG - chr4.1:84218137-84218156 MS.gene24883:CDS 65.0%
! TCCGGAGGAGCTGGTGGATG+AGG - chr4.1:84218062-84218081 MS.gene24883:CDS 65.0%
! CTCGAGAAGGCGTGGGGGCT+CGG - chr4.1:84218142-84218161 MS.gene24883:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 84216687 84218191 84216687 ID=MS.gene24883
chr4.1 mRNA 84216687 84218191 84216687 ID=MS.gene24883.t1;Parent=MS.gene24883
chr4.1 exon 84217818 84218191 84217818 ID=MS.gene24883.t1.exon1;Parent=MS.gene24883.t1
chr4.1 CDS 84217818 84218191 84217818 ID=cds.MS.gene24883.t1;Parent=MS.gene24883.t1
chr4.1 exon 84217143 84217467 84217143 ID=MS.gene24883.t1.exon2;Parent=MS.gene24883.t1
chr4.1 CDS 84217143 84217467 84217143 ID=cds.MS.gene24883.t1;Parent=MS.gene24883.t1
chr4.1 exon 84216687 84216932 84216687 ID=MS.gene24883.t1.exon3;Parent=MS.gene24883.t1
chr4.1 CDS 84216687 84216932 84216687 ID=cds.MS.gene24883.t1;Parent=MS.gene24883.t1
Gene Sequence

>MS.gene24883

ATGGGCTCAGAAACCATTCTAAAGCTTCCAATAATTGACTTCAATAACCTCAACTTGGAAGCCAAAAGTCCCAATTGGGAGTTAGTGAAGTCCCAAGTCTATAAGGCATTAGCAGAGTATGGTTGCTTCGAAGCAATTTTTGATAAAGTTCCTTTACACCTTCGCAAAGCCATATTTACTTCACTAGAAGAGCTCTTTGACCTCCCTTTAGAGACTAAGCTACTCAATGTGTCTAATAAGCCTTATAATGGCTATCTTGGTCAATATCCTGTAGTTCCACTTTATGAGAGGATGGCCATCGACGACGCAAATATCTTAGAGAAAGTAAAAAGCACGACCAATATCTTGTGGCCGGATGGAAACAAAAATTTTAGGTACGTCCTCAACATTATATCTTGATTGAATCATCAGTTAGAACCTAAAGTTGTTAATATTTTAAAATAGTCTCTAACATCGAAAATGTCTCTTCAAACATCTTTAATGGTAGTCTTTAGAGAGTTTTAAACTTCAAAAAGTTTATCCTTAACAAGTTTCATCATTGGAGAGGATTGATGCGACATAAAGTTGAAATGACGAATCATTACAAAAAAAACTCGTCGTTAACAATATCTCAAGTTTCTTCAAAGTGACGTGGCTATAAAACTTTGTAAACTTCATATCCTATTTATCATTGGAACTAATATTTTTTTAATTAGTCCCTTATTAATTTGATTTGCTTTTGCAGTGAAACCATAAATTCCTTCTCCGAGGAGCTAATTGAGTTGGATCAAATTATTAAAAAGATGATTTTGGAAAGTTTAGGTGTTGAAAAGTACATGGAGGAACACATGAACTCAACCAATTACCATCTCAGGGTTATGAAGTACAAAGGCCCTCAAACAAGTGACACAAAACTAGGCCTCAGTCCACACACTGACAAGAACTTTGTGACCATATTGTACCAAAATCAAGTGGAAGGTTTAGAGATGATGACCAAAGATGGACAATGGATAAGCTACAAGTCTTCTTCTTCAGGCAGTTTTGTAGTTGTGATTGGTGATTCTATGCATGTAAATTCCATTCACTATTCCTCATTTATAAATAACCATCAATTGGTAACTAATGAAGTTTTAAATCAGTGTCATGATCGCATAAAAATCTCTGATGTCGCAGCCCAGATCGTGGTCACATGCATTTATAAAACCATGTTGTTGAAATTTATTATTATGGCATTTGTTGAATTATTTTGAAAATTTTCATTTCTCATGTAAATTTTGCAGGCATGGTCAAACGGGAGGCTGCATTCGCCATTTCACCGGGTGATGATGAGTGGGAATGAGGCAAGGTATTCAGCAGGGTTGTTCTCCACCCCCAAAGAAGGGTACATTATAAAAGCTCCGGAGGAGCTGGTGGATGAGGAGCACCCTTTACTCTTTAAGCCTTTTGATTATGCTGAGTTCCTCAAGTATTATCACGCTCGAGAAGGCGTGGGGGCTCGGTCTCTGCGCACTTATTGTGGTGTTTGA

Protein sequence

>MS.gene24883.t1

MGSETILKLPIIDFNNLNLEAKSPNWELVKSQVYKALAEYGCFEAIFDKVPLHLRKAIFTSLEELFDLPLETKLLNVSNKPYNGYLGQYPVVPLYERMAIDDANILEKVKSTTNILWPDGNKNFSETINSFSEELIELDQIIKKMILESLGVEKYMEEHMNSTNYHLRVMKYKGPQTSDTKLGLSPHTDKNFVTILYQNQVEGLEMMTKDGQWISYKSSSSGSFVVVIGDSMHAWSNGRLHSPFHRVMMSGNEARYSAGLFSTPKEGYIIKAPEELVDEEHPLLFKPFDYAEFLKYYHAREGVGARSLRTYCGV