Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41633.t1 | XP_003602737.1 | 96.7 | 211 | 7 | 0 | 1 | 211 | 1 | 211 | 1.80E-117 | 431.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41633.t1 | Q67YC9 | 64.0 | 186 | 57 | 3 | 14 | 191 | 7 | 190 | 1.9e-67 | 256.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41633.t1 | G7J2S3 | 96.7 | 211 | 7 | 0 | 1 | 211 | 1 | 211 | 1.3e-117 | 431.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene41633 | 0.885393 | 8.45E-72 | -1.69E-46 |
| MS.gene049173 | MS.gene41633 | 0.840558 | 8.09E-58 | -1.69E-46 |
| MS.gene049181 | MS.gene41633 | -0.808831 | 2.55E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene41633 | 0.856601 | 2.88E-62 | -1.69E-46 |
| MS.gene049222 | MS.gene41633 | 0.870341 | 1.57E-66 | -1.69E-46 |
| MS.gene049232 | MS.gene41633 | 0.871607 | 6.01E-67 | -1.69E-46 |
| MS.gene049259 | MS.gene41633 | -0.811091 | 8.33E-51 | -1.69E-46 |
| MS.gene049281 | MS.gene41633 | -0.835554 | 1.57E-56 | -1.69E-46 |
| MS.gene049285 | MS.gene41633 | 0.903157 | 4.64E-79 | -1.69E-46 |
| MS.gene049312 | MS.gene41633 | -0.804373 | 2.23E-49 | -1.69E-46 |
| MS.gene049320 | MS.gene41633 | 0.902777 | 6.85E-79 | -1.69E-46 |
| MS.gene04939 | MS.gene41633 | 0.820952 | 5.23E-53 | -1.69E-46 |
| MS.gene049483 | MS.gene41633 | -0.800176 | 1.63E-48 | -1.69E-46 |
| MS.gene049609 | MS.gene41633 | 0.827181 | 1.80E-54 | -1.69E-46 |
| MS.gene049627 | MS.gene41633 | 0.815085 | 1.11E-51 | -1.69E-46 |
| MS.gene049633 | MS.gene41633 | 0.867553 | 1.26E-65 | -1.69E-46 |
| MS.gene049805 | MS.gene41633 | 0.803727 | 3.04E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene41633 | -0.827215 | 1.77E-54 | -1.69E-46 |
| MS.gene05010 | MS.gene41633 | 0.879647 | 1.05E-69 | -1.69E-46 |
| MS.gene050163 | MS.gene41633 | 0.90157 | 2.35E-78 | -1.69E-46 |
| MS.gene050165 | MS.gene41633 | 0.9182 | 2.09E-86 | -1.69E-46 |
| MS.gene050170 | MS.gene41633 | 0.837253 | 5.80E-57 | -1.69E-46 |
| MS.gene050216 | MS.gene41633 | 0.833633 | 4.77E-56 | -1.69E-46 |
| MS.gene050323 | MS.gene41633 | 0.881298 | 2.70E-70 | -1.69E-46 |
| MS.gene050333 | MS.gene41633 | 0.89091 | 6.43E-74 | -1.69E-46 |
| MS.gene050381 | MS.gene41633 | -0.822158 | 2.75E-53 | -1.69E-46 |
| MS.gene050444 | MS.gene41633 | 0.812736 | 3.65E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene41633 | 0.862565 | 4.63E-64 | -1.69E-46 |
| MS.gene050504 | MS.gene41633 | 0.926781 | 2.93E-91 | -1.69E-46 |
| MS.gene050518 | MS.gene41633 | 0.89502 | 1.42E-75 | -1.69E-46 |
| MS.gene050577 | MS.gene41633 | 0.875148 | 3.87E-68 | -1.69E-46 |
| MS.gene050612 | MS.gene41633 | 0.930984 | 7.37E-94 | -1.69E-46 |
| MS.gene050675 | MS.gene41633 | 0.879675 | 1.03E-69 | -1.69E-46 |
| MS.gene050699 | MS.gene41633 | 0.881523 | 2.24E-70 | -1.69E-46 |
| MS.gene050747 | MS.gene41633 | 0.816563 | 5.19E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene41633 | 0.851432 | 8.91E-61 | -1.69E-46 |
| MS.gene05079 | MS.gene41633 | -0.80048 | 1.41E-48 | -1.69E-46 |
| MS.gene05080 | MS.gene41633 | 0.846394 | 2.23E-59 | -1.69E-46 |
| MS.gene050832 | MS.gene41633 | -0.834401 | 3.06E-56 | -1.69E-46 |
| MS.gene050833 | MS.gene41633 | -0.829279 | 5.63E-55 | -1.69E-46 |
| MS.gene050868 | MS.gene41633 | 0.874426 | 6.82E-68 | -1.69E-46 |
| MS.gene050871 | MS.gene41633 | 0.872436 | 3.19E-67 | -1.69E-46 |
| MS.gene050876 | MS.gene41633 | 0.870719 | 1.18E-66 | -1.69E-46 |
| MS.gene05087 | MS.gene41633 | 0.800069 | 1.71E-48 | -1.69E-46 |
| MS.gene050883 | MS.gene41633 | -0.817792 | 2.74E-52 | -1.69E-46 |
| MS.gene050904 | MS.gene41633 | 0.846656 | 1.89E-59 | -1.69E-46 |
| MS.gene050950 | MS.gene41633 | 0.82324 | 1.54E-53 | -1.69E-46 |
| MS.gene050986 | MS.gene41633 | 0.910104 | 2.72E-82 | -1.69E-46 |
| MS.gene05100 | MS.gene41633 | 0.828607 | 8.18E-55 | -1.69E-46 |
| MS.gene051044 | MS.gene41633 | -0.82334 | 1.46E-53 | -1.69E-46 |
| MS.gene05104 | MS.gene41633 | -0.812633 | 3.84E-51 | -1.69E-46 |
| MS.gene051127 | MS.gene41633 | -0.833291 | 5.80E-56 | -1.69E-46 |
| MS.gene051138 | MS.gene41633 | -0.838627 | 2.57E-57 | -1.69E-46 |
| MS.gene051228 | MS.gene41633 | 0.801836 | 7.46E-49 | -1.69E-46 |
| MS.gene051268 | MS.gene41633 | 0.830171 | 3.41E-55 | -1.69E-46 |
| MS.gene051317 | MS.gene41633 | 0.87414 | 8.52E-68 | -1.69E-46 |
| MS.gene051364 | MS.gene41633 | -0.836516 | 8.94E-57 | -1.69E-46 |
| MS.gene051366 | MS.gene41633 | -0.849089 | 4.05E-60 | -1.69E-46 |
| MS.gene051367 | MS.gene41633 | -0.825091 | 5.66E-54 | -1.69E-46 |
| MS.gene051551 | MS.gene41633 | 0.843765 | 1.15E-58 | -1.69E-46 |
| MS.gene051651 | MS.gene41633 | -0.822665 | 2.10E-53 | -1.69E-46 |
| MS.gene051694 | MS.gene41633 | 0.806372 | 8.49E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene41633 | 0.891122 | 5.30E-74 | -1.69E-46 |
| MS.gene051946 | MS.gene41633 | -0.800091 | 1.70E-48 | -1.69E-46 |
| MS.gene051949 | MS.gene41633 | 0.839074 | 1.97E-57 | -1.69E-46 |
| MS.gene052129 | MS.gene41633 | -0.802466 | 5.54E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene41633 | 0.870398 | 1.50E-66 | -1.69E-46 |
| MS.gene052379 | MS.gene41633 | 0.815028 | 1.14E-51 | -1.69E-46 |
| MS.gene052482 | MS.gene41633 | 0.841455 | 4.70E-58 | -1.69E-46 |
| MS.gene052486 | MS.gene41633 | 0.857233 | 1.88E-62 | -1.69E-46 |
| MS.gene052503 | MS.gene41633 | 0.813257 | 2.81E-51 | -1.69E-46 |
| MS.gene052506 | MS.gene41633 | 0.812889 | 3.38E-51 | -1.69E-46 |
| MS.gene052615 | MS.gene41633 | 0.818035 | 2.42E-52 | -1.69E-46 |
| MS.gene052822 | MS.gene41633 | 0.835795 | 1.36E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene41633 | 0.813345 | 2.68E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene41633 | 0.807244 | 5.56E-50 | -1.69E-46 |
| MS.gene052916 | MS.gene41633 | 0.857501 | 1.56E-62 | -1.69E-46 |
| MS.gene052966 | MS.gene41633 | 0.851866 | 6.71E-61 | -1.69E-46 |
| MS.gene053203 | MS.gene41633 | 0.864665 | 1.03E-64 | -1.69E-46 |
| MS.gene053207 | MS.gene41633 | 0.810416 | 1.17E-50 | -1.69E-46 |
| MS.gene053213 | MS.gene41633 | 0.861923 | 7.29E-64 | -1.69E-46 |
| MS.gene053284 | MS.gene41633 | 0.819128 | 1.37E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene41633 | 0.866047 | 3.79E-65 | -1.69E-46 |
| MS.gene053420 | MS.gene41633 | -0.823673 | 1.22E-53 | -1.69E-46 |
| MS.gene053561 | MS.gene41633 | -0.839188 | 1.84E-57 | -1.69E-46 |
| MS.gene053574 | MS.gene41633 | 0.830365 | 3.06E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene41633 | 0.822495 | 2.30E-53 | -1.69E-46 |
| MS.gene053824 | MS.gene41633 | 0.842762 | 2.12E-58 | -1.69E-46 |
| MS.gene053916 | MS.gene41633 | 0.813678 | 2.27E-51 | -1.69E-46 |
| MS.gene054056 | MS.gene41633 | -0.823484 | 1.35E-53 | -1.69E-46 |
| MS.gene054408 | MS.gene41633 | 0.806798 | 6.91E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene41633 | 0.81382 | 2.11E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene41633 | 0.845385 | 4.20E-59 | -1.69E-46 |
| MS.gene054616 | MS.gene41633 | -0.824919 | 6.22E-54 | -1.69E-46 |
| MS.gene054638 | MS.gene41633 | 0.801222 | 9.97E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene41633 | 0.899982 | 1.15E-77 | -1.69E-46 |
| MS.gene054706 | MS.gene41633 | -0.824708 | 6.97E-54 | -1.69E-46 |
| MS.gene05470 | MS.gene41633 | 0.869396 | 3.20E-66 | -1.69E-46 |
| MS.gene054954 | MS.gene41633 | 0.918788 | 1.01E-86 | -1.69E-46 |
| MS.gene054959 | MS.gene41633 | -0.82275 | 2.00E-53 | -1.69E-46 |
| MS.gene055154 | MS.gene41633 | -0.836847 | 7.36E-57 | -1.69E-46 |
| MS.gene055204 | MS.gene41633 | -0.803015 | 4.27E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene41633 | 0.80763 | 4.60E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene41633 | 0.900241 | 8.92E-78 | -1.69E-46 |
| MS.gene055502 | MS.gene41633 | 0.899273 | 2.33E-77 | -1.69E-46 |
| MS.gene055577 | MS.gene41633 | 0.897669 | 1.12E-76 | -1.69E-46 |
| MS.gene055634 | MS.gene41633 | 0.838196 | 3.32E-57 | -1.69E-46 |
| MS.gene055636 | MS.gene41633 | 0.80788 | 4.07E-50 | -1.69E-46 |
| MS.gene055638 | MS.gene41633 | 0.834145 | 3.55E-56 | -1.69E-46 |
| MS.gene055722 | MS.gene41633 | 0.807217 | 5.63E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene41633 | 0.875045 | 4.20E-68 | -1.69E-46 |
| MS.gene055750 | MS.gene41633 | 0.855442 | 6.29E-62 | -1.69E-46 |
| MS.gene055751 | MS.gene41633 | 0.887127 | 1.87E-72 | -1.69E-46 |
| MS.gene055776 | MS.gene41633 | 0.898083 | 7.50E-77 | -1.69E-46 |
| MS.gene055849 | MS.gene41633 | 0.831886 | 1.29E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene41633 | 0.877308 | 6.97E-69 | -1.69E-46 |
| MS.gene055941 | MS.gene41633 | 0.812492 | 4.13E-51 | -1.69E-46 |
| MS.gene055942 | MS.gene41633 | -0.843664 | 1.22E-58 | -1.69E-46 |
| MS.gene055956 | MS.gene41633 | -0.805993 | 1.02E-49 | -1.69E-46 |
| MS.gene056046 | MS.gene41633 | 0.813092 | 3.05E-51 | -1.69E-46 |
| MS.gene056083 | MS.gene41633 | 0.810217 | 1.29E-50 | -1.69E-46 |
| MS.gene056187 | MS.gene41633 | -0.804742 | 1.87E-49 | -1.69E-46 |
| MS.gene056188 | MS.gene41633 | -0.839602 | 1.44E-57 | -1.69E-46 |
| MS.gene056224 | MS.gene41633 | -0.80158 | 8.42E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene41633 | 0.824577 | 7.49E-54 | -1.69E-46 |
| MS.gene056409 | MS.gene41633 | 0.8071 | 5.96E-50 | -1.69E-46 |
| MS.gene056450 | MS.gene41633 | 0.813981 | 1.94E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene41633 | 0.903062 | 5.11E-79 | -1.69E-46 |
| MS.gene056510 | MS.gene41633 | 0.884499 | 1.82E-71 | -1.69E-46 |
| MS.gene056549 | MS.gene41633 | 0.823388 | 1.42E-53 | -1.69E-46 |
| MS.gene056550 | MS.gene41633 | -0.829339 | 5.44E-55 | -1.69E-46 |
| MS.gene056610 | MS.gene41633 | 0.811245 | 7.71E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene41633 | 0.890534 | 9.03E-74 | -1.69E-46 |
| MS.gene056692 | MS.gene41633 | 0.881457 | 2.36E-70 | -1.69E-46 |
| MS.gene056761 | MS.gene41633 | -0.841911 | 3.57E-58 | -1.69E-46 |
| MS.gene056856 | MS.gene41633 | -0.822075 | 2.88E-53 | -1.69E-46 |
| MS.gene056857 | MS.gene41633 | -0.819291 | 1.25E-52 | -1.69E-46 |
| MS.gene056898 | MS.gene41633 | 0.844261 | 8.44E-59 | -1.69E-46 |
| MS.gene057129 | MS.gene41633 | 0.801614 | 8.29E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene41633 | 0.80575 | 1.15E-49 | -1.69E-46 |
| MS.gene05753 | MS.gene41633 | 0.81411 | 1.82E-51 | -1.69E-46 |
| MS.gene057658 | MS.gene41633 | 0.80799 | 3.86E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene41633 | 0.838427 | 2.89E-57 | -1.69E-46 |
| MS.gene057986 | MS.gene41633 | 0.866297 | 3.16E-65 | -1.69E-46 |
| MS.gene058111 | MS.gene41633 | -0.81498 | 1.17E-51 | -1.69E-46 |
| MS.gene058171 | MS.gene41633 | -0.803825 | 2.90E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene41633 | -0.809331 | 2.00E-50 | -1.69E-46 |
| MS.gene058268 | MS.gene41633 | -0.81423 | 1.71E-51 | -1.69E-46 |
| MS.gene058269 | MS.gene41633 | -0.816523 | 5.29E-52 | -1.69E-46 |
| MS.gene058334 | MS.gene41633 | -0.854375 | 1.28E-61 | -1.69E-46 |
| MS.gene058335 | MS.gene41633 | 0.827646 | 1.39E-54 | -1.69E-46 |
| MS.gene058338 | MS.gene41633 | 0.817185 | 3.76E-52 | -1.69E-46 |
| MS.gene05837 | MS.gene41633 | 0.850671 | 1.46E-60 | -1.69E-46 |
| MS.gene058419 | MS.gene41633 | 0.890559 | 8.83E-74 | -1.69E-46 |
| MS.gene058544 | MS.gene41633 | 0.869193 | 3.72E-66 | -1.69E-46 |
| MS.gene058719 | MS.gene41633 | 0.804011 | 2.65E-49 | -1.69E-46 |
| MS.gene058723 | MS.gene41633 | 0.832606 | 8.59E-56 | -1.69E-46 |
| MS.gene058773 | MS.gene41633 | 0.896393 | 3.85E-76 | -1.69E-46 |
| MS.gene058838 | MS.gene41633 | 0.840161 | 1.03E-57 | -1.69E-46 |
| MS.gene058978 | MS.gene41633 | -0.821122 | 4.78E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene41633 | 0.928959 | 1.38E-92 | -1.69E-46 |
| MS.gene059023 | MS.gene41633 | 0.878548 | 2.57E-69 | -1.69E-46 |
| MS.gene059029 | MS.gene41633 | 0.811531 | 6.68E-51 | -1.69E-46 |
| MS.gene059079 | MS.gene41633 | 0.847218 | 1.33E-59 | -1.69E-46 |
| MS.gene05912 | MS.gene41633 | 0.82338 | 1.43E-53 | -1.69E-46 |
| MS.gene05913 | MS.gene41633 | 0.821239 | 4.49E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene41633 | 0.916501 | 1.65E-85 | -1.69E-46 |
| MS.gene059699 | MS.gene41633 | -0.800312 | 1.53E-48 | -1.69E-46 |
| MS.gene059703 | MS.gene41633 | -0.806357 | 8.55E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene41633 | 0.871411 | 6.98E-67 | -1.69E-46 |
| MS.gene059756 | MS.gene41633 | 0.837065 | 6.47E-57 | -1.69E-46 |
| MS.gene059801 | MS.gene41633 | 0.816361 | 5.75E-52 | -1.69E-46 |
| MS.gene059837 | MS.gene41633 | 0.824924 | 6.20E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene41633 | 0.910129 | 2.65E-82 | -1.69E-46 |
| MS.gene06000 | MS.gene41633 | 0.832473 | 9.27E-56 | -1.69E-46 |
| MS.gene060337 | MS.gene41633 | -0.84517 | 4.80E-59 | -1.69E-46 |
| MS.gene060341 | MS.gene41633 | 0.804153 | 2.48E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene41633 | 0.80542 | 1.35E-49 | -1.69E-46 |
| MS.gene060526 | MS.gene41633 | 0.801348 | 9.39E-49 | -1.69E-46 |
| MS.gene060595 | MS.gene41633 | -0.821287 | 4.38E-53 | -1.69E-46 |
| MS.gene060703 | MS.gene41633 | 0.900315 | 8.28E-78 | -1.69E-46 |
| MS.gene060728 | MS.gene41633 | 0.819814 | 9.53E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene41633 | 0.911385 | 6.46E-83 | -1.69E-46 |
| MS.gene060778 | MS.gene41633 | 0.836669 | 8.17E-57 | -1.69E-46 |
| MS.gene06077 | MS.gene41633 | 0.896412 | 3.78E-76 | -1.69E-46 |
| MS.gene060823 | MS.gene41633 | -0.85937 | 4.34E-63 | -1.69E-46 |
| MS.gene06092 | MS.gene41633 | 0.829587 | 4.74E-55 | -1.69E-46 |
| MS.gene060982 | MS.gene41633 | 0.900779 | 5.21E-78 | -1.69E-46 |
| MS.gene061044 | MS.gene41633 | -0.82342 | 1.40E-53 | -1.69E-46 |
| MS.gene061150 | MS.gene41633 | 0.8738 | 1.11E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41633.t1 | MTR_3g098490 | 96.682 | 211 | 7 | 0 | 1 | 211 | 1 | 211 | 4.51e-155 | 428 |
| MS.gene41633.t1 | MTR_3g098500 | 76.037 | 217 | 44 | 3 | 1 | 211 | 7 | 221 | 1.74e-119 | 338 |
| MS.gene41633.t1 | MTR_8g096110 | 68.617 | 188 | 56 | 2 | 1 | 186 | 1 | 187 | 4.51e-93 | 271 |
| MS.gene41633.t1 | MTR_8g096080 | 70.000 | 190 | 52 | 3 | 1 | 186 | 1 | 189 | 1.29e-92 | 270 |
| MS.gene41633.t1 | MTR_8g096100 | 60.199 | 201 | 77 | 3 | 1 | 199 | 1 | 200 | 1.16e-82 | 245 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41633.t1 | AT3G23760 | 63.684 | 190 | 61 | 3 | 7 | 190 | 7 | 194 | 4.87e-86 | 253 |
| MS.gene41633.t1 | AT4G14100 | 63.978 | 186 | 57 | 3 | 14 | 191 | 7 | 190 | 9.43e-85 | 250 |
Find 61 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGATGGTGCTACCTATTT+AGG | 0.222154 | 3.4:+88360060 | MS.gene41633:CDS |
| CTCCGTCCTAATTGGCTTGA+TGG | 0.262701 | 3.4:+88360045 | MS.gene41633:CDS |
| AAGCGGATCCCTACAGAAAT+TGG | 0.272446 | 3.4:+88359858 | MS.gene41633:CDS |
| TCCGGCCAAGCTGCCGGAAC+TGG | 0.316253 | 3.4:-88359805 | None:intergenic |
| AACTTGTTCTTGACCTAAAT+AGG | 0.332003 | 3.4:-88360073 | None:intergenic |
| ATAATTTCCTATGTAATGTT+TGG | 0.333466 | 3.4:+88360097 | MS.gene41633:CDS |
| CCCTACAGAAATTGGACTTA+TGG | 0.343249 | 3.4:+88359866 | MS.gene41633:CDS |
| TGCAATAGAACACACCTTTA+CGG | 0.348173 | 3.4:+88359735 | MS.gene41633:CDS |
| ACTGTTCGTGGCGATTCTTT+TGG | 0.354532 | 3.4:+88360665 | MS.gene41633:CDS |
| CAACATCATTGAGTTGATCT+TGG | 0.364611 | 3.4:-88359924 | None:intergenic |
| TTGGTATTCTCCGTCCTAAT+TGG | 0.369794 | 3.4:+88360037 | MS.gene41633:CDS |
| GTAGCACCATCAAGCCAATT+AGG | 0.370390 | 3.4:-88360051 | None:intergenic |
| TTGTAGATTACGACCTTGAA+TGG | 0.373551 | 3.4:+88359944 | MS.gene41633:CDS |
| TAATTTCCTATGTAATGTTT+GGG | 0.374401 | 3.4:+88360098 | MS.gene41633:CDS |
| CTCGACGGCGGAGCCAGTTC+CGG | 0.389600 | 3.4:+88359792 | MS.gene41633:CDS |
| GCCAGTTCCGGCAGCTTGGC+CGG | 0.421754 | 3.4:+88359804 | MS.gene41633:CDS |
| GTGTAGAAGATCCACTTAAC+AGG | 0.439368 | 3.4:-88360168 | None:intergenic |
| AACTGCTCCGGCCAAGCTGC+CGG | 0.446630 | 3.4:-88359811 | None:intergenic |
| TTAGAATCTGCTACTGTTCG+TGG | 0.447496 | 3.4:+88360653 | MS.gene41633:CDS |
| ATGTTGAAGTTTCGACCGTT+GGG | 0.451295 | 3.4:-88359898 | None:intergenic |
| GTCTGATTGAAGCAGTATAC+AGG | 0.464973 | 3.4:-88360620 | None:intergenic |
| AAGTAGTACCGTTACCGTAA+AGG | 0.468001 | 3.4:-88359749 | None:intergenic |
| TGCAGTGGCGGTCGGAGGGA+TGG | 0.474901 | 3.4:-88359996 | None:intergenic |
| AGGTTCCATTGGTCCATTCA+AGG | 0.477181 | 3.4:-88359957 | None:intergenic |
| CTTTCTCCCAAACATTACAT+AGG | 0.489592 | 3.4:-88360104 | None:intergenic |
| GATGTTGAAGTTTCGACCGT+TGG | 0.491687 | 3.4:-88359899 | None:intergenic |
| CAAAGTCGATGCTGCTGCAT+AGG | 0.503520 | 3.4:+88360703 | MS.gene41633:CDS |
| CGGAGCCAGTTCCGGCAGCT+TGG | 0.510708 | 3.4:+88359800 | MS.gene41633:CDS |
| AACCTTGCAGTGGCGGTCGG+AGG | 0.511934 | 3.4:-88360001 | None:intergenic |
| ACCTTGCAGTGGCGGTCGGA+GGG | 0.512978 | 3.4:-88360000 | None:intergenic |
| ACCATAAGTCCAATTTCTGT+AGG | 0.527172 | 3.4:-88359867 | None:intergenic |
| TCACTCGAAGGCCTGTTAAG+TGG | 0.539058 | 3.4:+88360157 | MS.gene41633:CDS |
| GACAACCTTGCAGTGGCGGT+CGG | 0.543354 | 3.4:-88360004 | None:intergenic |
| TGCTCATGTGATGACATTTG+AGG | 0.548966 | 3.4:+88360562 | MS.gene41633:CDS |
| GTTAAGTGGATCTTCTACAC+AGG | 0.549287 | 3.4:+88360171 | MS.gene41633:CDS |
| GCTTGAGGATGTGCATTGGC+AGG | 0.549400 | 3.4:+88360595 | MS.gene41633:CDS |
| TCCCTCCGACCGCCACTGCA+AGG | 0.553601 | 3.4:+88359999 | MS.gene41633:CDS |
| GTACATGAAGGAGGTTCCAT+TGG | 0.555646 | 3.4:-88359968 | None:intergenic |
| GCTTCTGTTCATGAATAGTA+CGG | 0.566725 | 3.4:-88359839 | None:intergenic |
| CCATAAGTCCAATTTCTGTA+GGG | 0.573008 | 3.4:-88359866 | None:intergenic |
| CATGGACAACCTTGCAGTGG+CGG | 0.573319 | 3.4:-88360008 | None:intergenic |
| AGTACGGAATGAAACTGCTC+CGG | 0.575238 | 3.4:-88359823 | None:intergenic |
| AATTGGACTTATGGTACGAC+TGG | 0.582011 | 3.4:+88359875 | MS.gene41633:CDS |
| TTATGGTACGACTGGCCCAA+CGG | 0.591091 | 3.4:+88359883 | MS.gene41633:CDS |
| AGAACACACCTTTACGGTAA+CGG | 0.593520 | 3.4:+88359741 | MS.gene41633:CDS |
| CATGTGATGACATTTGAGGT+TGG | 0.595333 | 3.4:+88360566 | MS.gene41633:CDS |
| AAGGTTGTCCATGTTGAAGT+TGG | 0.595989 | 3.4:+88360018 | MS.gene41633:CDS |
| ATGAAGATGTTCTCACTCGA+AGG | 0.605789 | 3.4:+88360145 | MS.gene41633:CDS |
| CACCATCAAGCCAATTAGGA+CGG | 0.609769 | 3.4:-88360047 | None:intergenic |
| TGAGGTTGGAGCAGTGCTTG+AGG | 0.612681 | 3.4:+88360580 | MS.gene41633:CDS |
| TACGACCTTGAATGGACCAA+TGG | 0.624357 | 3.4:+88359952 | MS.gene41633:CDS |
| AAAGGTGTGTTCTATTGCAG+AGG | 0.630711 | 3.4:-88359731 | None:intergenic |
| GTACTATTCATGAACAGAAG+CGG | 0.639978 | 3.4:+88359841 | MS.gene41633:CDS |
| GGGATGGAGAGTGTACATGA+AGG | 0.647111 | 3.4:-88359980 | None:intergenic |
| CAGTGCTTGAGGATGTGCAT+TGG | 0.659088 | 3.4:+88360591 | MS.gene41633:CDS |
| ATGGAGAGTGTACATGAAGG+AGG | 0.663920 | 3.4:-88359977 | None:intergenic |
| GGAGAATACCAACTTCAACA+TGG | 0.664515 | 3.4:-88360026 | None:intergenic |
| TCTCTTCTCACTCTCGACGG+CGG | 0.673727 | 3.4:+88359780 | MS.gene41633:CDS |
| CAACATGGACAACCTTGCAG+TGG | 0.677545 | 3.4:-88360011 | None:intergenic |
| CGTTCTCTTCTCACTCTCGA+CGG | 0.680397 | 3.4:+88359777 | MS.gene41633:CDS |
| CGAGAGTGAGAAGAGAACGA+CGG | 0.733666 | 3.4:-88359773 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTTCCTATGTAATGTT+TGG | + | chr3.4:88360097-88360116 | MS.gene41633:CDS | 20.0% |
| !! | ATGATAAACTAATAAGTTCA+AGG | - | chr3.4:88360426-88360445 | None:intergenic | 20.0% |
| !! | CTTATATGATAACAATTTGT+CGG | + | chr3.4:88360319-88360338 | MS.gene41633:intron | 20.0% |
| !! | TAATTTCCTATGTAATGTTT+GGG | + | chr3.4:88360098-88360117 | MS.gene41633:CDS | 20.0% |
| !! | TGATAAACTAATAAGTTCAA+GGG | - | chr3.4:88360425-88360444 | None:intergenic | 20.0% |
| ! | TGAATTAAGGTTTGATATAC+TGG | + | chr3.4:88360520-88360539 | MS.gene41633:intron | 25.0% |
| !!! | TTTGGATTCATTGACTTATT+TGG | + | chr3.4:88360239-88360258 | MS.gene41633:intron | 25.0% |
| AATCCAAACAAACAGTAACT+AGG | - | chr3.4:88360227-88360246 | None:intergenic | 30.0% | |
| CAAACCTTAATTCATTTCAC+AGG | - | chr3.4:88360514-88360533 | None:intergenic | 30.0% | |
| CATTCCTGTGAAATGAATTA+AGG | + | chr3.4:88360507-88360526 | MS.gene41633:intron | 30.0% | |
| GATATACTGGTAATTAATGC+AGG | + | chr3.4:88360533-88360552 | MS.gene41633:intron | 30.0% | |
| ! | AACTTGTTCTTGACCTAAAT+AGG | - | chr3.4:88360076-88360095 | None:intergenic | 30.0% |
| ACCATAAGTCCAATTTCTGT+AGG | - | chr3.4:88359870-88359889 | None:intergenic | 35.0% | |
| ACTCCTAGTTACTGTTTGTT+TGG | + | chr3.4:88360221-88360240 | MS.gene41633:intron | 35.0% | |
| CCATAAGTCCAATTTCTGTA+GGG | - | chr3.4:88359869-88359888 | None:intergenic | 35.0% | |
| CTTTCTCCCAAACATTACAT+AGG | - | chr3.4:88360107-88360126 | None:intergenic | 35.0% | |
| GCTTCTGTTCATGAATAGTA+CGG | - | chr3.4:88359842-88359861 | None:intergenic | 35.0% | |
| GTACTATTCATGAACAGAAG+CGG | + | chr3.4:88359841-88359860 | MS.gene41633:CDS | 35.0% | |
| TGCAATAGAACACACCTTTA+CGG | + | chr3.4:88359735-88359754 | MS.gene41633:CDS | 35.0% | |
| TTGTAGATTACGACCTTGAA+TGG | + | chr3.4:88359944-88359963 | MS.gene41633:CDS | 35.0% | |
| !! | CAACATCATTGAGTTGATCT+TGG | - | chr3.4:88359927-88359946 | None:intergenic | 35.0% |
| !! | TCTTTTGGAAGTTTGATGAG+AGG | + | chr3.4:88360680-88360699 | MS.gene41633:CDS | 35.0% |
| AAGGTTGTCCATGTTGAAGT+TGG | + | chr3.4:88360018-88360037 | MS.gene41633:CDS | 40.0% | |
| AAGTAGTACCGTTACCGTAA+AGG | - | chr3.4:88359752-88359771 | None:intergenic | 40.0% | |
| AATTGGACTTATGGTACGAC+TGG | + | chr3.4:88359875-88359894 | MS.gene41633:CDS | 40.0% | |
| AGAACACACCTTTACGGTAA+CGG | + | chr3.4:88359741-88359760 | MS.gene41633:CDS | 40.0% | |
| ATGAAGATGTTCTCACTCGA+AGG | + | chr3.4:88360145-88360164 | MS.gene41633:CDS | 40.0% | |
| ATGTTGAAGTTTCGACCGTT+GGG | - | chr3.4:88359901-88359920 | None:intergenic | 40.0% | |
| CCCTACAGAAATTGGACTTA+TGG | + | chr3.4:88359866-88359885 | MS.gene41633:CDS | 40.0% | |
| GGAGAATACCAACTTCAACA+TGG | - | chr3.4:88360029-88360048 | None:intergenic | 40.0% | |
| GTCTGATTGAAGCAGTATAC+AGG | - | chr3.4:88360623-88360642 | None:intergenic | 40.0% | |
| GTGTAGAAGATCCACTTAAC+AGG | - | chr3.4:88360171-88360190 | None:intergenic | 40.0% | |
| GTTAAGTGGATCTTCTACAC+AGG | + | chr3.4:88360171-88360190 | MS.gene41633:CDS | 40.0% | |
| TGCTCATGTGATGACATTTG+AGG | + | chr3.4:88360562-88360581 | MS.gene41633:CDS | 40.0% | |
| TTAGAATCTGCTACTGTTCG+TGG | + | chr3.4:88360653-88360672 | MS.gene41633:CDS | 40.0% | |
| TTGGTATTCTCCGTCCTAAT+TGG | + | chr3.4:88360037-88360056 | MS.gene41633:CDS | 40.0% | |
| ! | AAAGGTGTGTTCTATTGCAG+AGG | - | chr3.4:88359734-88359753 | None:intergenic | 40.0% |
| ! | CATGTGATGACATTTGAGGT+TGG | + | chr3.4:88360566-88360585 | MS.gene41633:CDS | 40.0% |
| !! | CTTGATGGTGCTACCTATTT+AGG | + | chr3.4:88360060-88360079 | MS.gene41633:CDS | 40.0% |
| AAGCGGATCCCTACAGAAAT+TGG | + | chr3.4:88359858-88359877 | MS.gene41633:CDS | 45.0% | |
| AGGTTCCATTGGTCCATTCA+AGG | - | chr3.4:88359960-88359979 | None:intergenic | 45.0% | |
| AGTACGGAATGAAACTGCTC+CGG | - | chr3.4:88359826-88359845 | None:intergenic | 45.0% | |
| CACCATCAAGCCAATTAGGA+CGG | - | chr3.4:88360050-88360069 | None:intergenic | 45.0% | |
| GATGTTGAAGTTTCGACCGT+TGG | - | chr3.4:88359902-88359921 | None:intergenic | 45.0% | |
| GTACATGAAGGAGGTTCCAT+TGG | - | chr3.4:88359971-88359990 | None:intergenic | 45.0% | |
| GTAGCACCATCAAGCCAATT+AGG | - | chr3.4:88360054-88360073 | None:intergenic | 45.0% | |
| TACGACCTTGAATGGACCAA+TGG | + | chr3.4:88359952-88359971 | MS.gene41633:CDS | 45.0% | |
| ! | ACTGTTCGTGGCGATTCTTT+TGG | + | chr3.4:88360665-88360684 | MS.gene41633:CDS | 45.0% |
| ! | ATGGAGAGTGTACATGAAGG+AGG | - | chr3.4:88359980-88359999 | None:intergenic | 45.0% |
| CAACATGGACAACCTTGCAG+TGG | - | chr3.4:88360014-88360033 | None:intergenic | 50.0% | |
| CAGTGCTTGAGGATGTGCAT+TGG | + | chr3.4:88360591-88360610 | MS.gene41633:CDS | 50.0% | |
| CGAGAGTGAGAAGAGAACGA+CGG | - | chr3.4:88359776-88359795 | None:intergenic | 50.0% | |
| CGTTCTCTTCTCACTCTCGA+CGG | + | chr3.4:88359777-88359796 | MS.gene41633:CDS | 50.0% | |
| TCACTCGAAGGCCTGTTAAG+TGG | + | chr3.4:88360157-88360176 | MS.gene41633:CDS | 50.0% | |
| ! | GGGATGGAGAGTGTACATGA+AGG | - | chr3.4:88359983-88360002 | None:intergenic | 50.0% |
| ! | TTATGGTACGACTGGCCCAA+CGG | + | chr3.4:88359883-88359902 | MS.gene41633:CDS | 50.0% |
| !! | CTCCGTCCTAATTGGCTTGA+TGG | + | chr3.4:88360045-88360064 | MS.gene41633:CDS | 50.0% |
| CATGGACAACCTTGCAGTGG+CGG | - | chr3.4:88360011-88360030 | None:intergenic | 55.0% | |
| TCTCTTCTCACTCTCGACGG+CGG | + | chr3.4:88359780-88359799 | MS.gene41633:CDS | 55.0% | |
| TGAGGTTGGAGCAGTGCTTG+AGG | + | chr3.4:88360580-88360599 | MS.gene41633:CDS | 55.0% | |
| ! | GCTTGAGGATGTGCATTGGC+AGG | + | chr3.4:88360595-88360614 | MS.gene41633:CDS | 55.0% |
| GACAACCTTGCAGTGGCGGT+CGG | - | chr3.4:88360007-88360026 | None:intergenic | 60.0% | |
| AACCTTGCAGTGGCGGTCGG+AGG | - | chr3.4:88360004-88360023 | None:intergenic | 65.0% | |
| AACTGCTCCGGCCAAGCTGC+CGG | - | chr3.4:88359814-88359833 | None:intergenic | 65.0% | |
| ACCTTGCAGTGGCGGTCGGA+GGG | - | chr3.4:88360003-88360022 | None:intergenic | 65.0% | |
| CGGAGCCAGTTCCGGCAGCT+TGG | + | chr3.4:88359800-88359819 | MS.gene41633:CDS | 70.0% | |
| CTCGACGGCGGAGCCAGTTC+CGG | + | chr3.4:88359792-88359811 | MS.gene41633:CDS | 70.0% | |
| GCCAGTTCCGGCAGCTTGGC+CGG | + | chr3.4:88359804-88359823 | MS.gene41633:CDS | 70.0% | |
| TCCCTCCGACCGCCACTGCA+AGG | + | chr3.4:88359999-88360018 | MS.gene41633:CDS | 70.0% | |
| TCCGGCCAAGCTGCCGGAAC+TGG | - | chr3.4:88359808-88359827 | None:intergenic | 70.0% | |
| TGCAGTGGCGGTCGGAGGGA+TGG | - | chr3.4:88359999-88360018 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 88359727 | 88360724 | 88359727 | ID=MS.gene41633 |
| chr3.4 | mRNA | 88359727 | 88360724 | 88359727 | ID=MS.gene41633.t1;Parent=MS.gene41633 |
| chr3.4 | exon | 88359727 | 88360192 | 88359727 | ID=MS.gene41633.t1.exon1;Parent=MS.gene41633.t1 |
| chr3.4 | CDS | 88359727 | 88360192 | 88359727 | ID=cds.MS.gene41633.t1;Parent=MS.gene41633.t1 |
| chr3.4 | exon | 88360555 | 88360724 | 88360555 | ID=MS.gene41633.t1.exon2;Parent=MS.gene41633.t1 |
| chr3.4 | CDS | 88360555 | 88360724 | 88360555 | ID=cds.MS.gene41633.t1;Parent=MS.gene41633.t1 |
| Gene Sequence |
| Protein sequence |
