Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20374.t1 | XP_003611209.1 | 95 | 139 | 7 | 0 | 1 | 139 | 1 | 139 | 5.20E-71 | 277.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20374.t1 | Q55720 | 62.7 | 67 | 25 | 0 | 71 | 137 | 2 | 68 | 2.7e-20 | 100.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20374.t1 | G7KEW0 | 95.0 | 139 | 7 | 0 | 1 | 139 | 1 | 139 | 3.8e-71 | 277.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene20374 | 0.88692 | 2.25E-72 | -1.69E-46 |
| MS.gene049173 | MS.gene20374 | 0.860281 | 2.30E-63 | -1.69E-46 |
| MS.gene049217 | MS.gene20374 | 0.860593 | 1.85E-63 | -1.69E-46 |
| MS.gene049222 | MS.gene20374 | 0.867398 | 1.41E-65 | -1.69E-46 |
| MS.gene049232 | MS.gene20374 | 0.806749 | 7.07E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene20374 | 0.90675 | 1.06E-80 | -1.69E-46 |
| MS.gene049320 | MS.gene20374 | 0.887493 | 1.36E-72 | -1.69E-46 |
| MS.gene04939 | MS.gene20374 | 0.82452 | 7.72E-54 | -1.69E-46 |
| MS.gene049427 | MS.gene20374 | 0.823867 | 1.10E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene20374 | 0.836277 | 1.03E-56 | -1.69E-46 |
| MS.gene049633 | MS.gene20374 | 0.878695 | 2.28E-69 | -1.69E-46 |
| MS.gene049805 | MS.gene20374 | 0.837201 | 5.98E-57 | -1.69E-46 |
| MS.gene05010 | MS.gene20374 | 0.81316 | 2.95E-51 | -1.69E-46 |
| MS.gene050163 | MS.gene20374 | 0.898979 | 3.12E-77 | -1.69E-46 |
| MS.gene050165 | MS.gene20374 | 0.907832 | 3.31E-81 | -1.69E-46 |
| MS.gene050323 | MS.gene20374 | 0.825488 | 4.56E-54 | -1.69E-46 |
| MS.gene050333 | MS.gene20374 | 0.919244 | 5.74E-87 | -1.69E-46 |
| MS.gene050444 | MS.gene20374 | 0.875495 | 2.95E-68 | -1.69E-46 |
| MS.gene050504 | MS.gene20374 | 0.872689 | 2.62E-67 | -1.69E-46 |
| MS.gene050518 | MS.gene20374 | 0.879813 | 9.17E-70 | -1.69E-46 |
| MS.gene050538 | MS.gene20374 | 0.804307 | 2.30E-49 | -1.69E-46 |
| MS.gene050577 | MS.gene20374 | 0.823318 | 1.48E-53 | -1.69E-46 |
| MS.gene050593 | MS.gene20374 | 0.813437 | 2.56E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene20374 | 0.904208 | 1.56E-79 | -1.69E-46 |
| MS.gene050675 | MS.gene20374 | 0.867813 | 1.04E-65 | -1.69E-46 |
| MS.gene050699 | MS.gene20374 | 0.863437 | 2.49E-64 | -1.69E-46 |
| MS.gene050747 | MS.gene20374 | 0.816773 | 4.65E-52 | -1.69E-46 |
| MS.gene050767 | MS.gene20374 | 0.830697 | 2.54E-55 | -1.69E-46 |
| MS.gene050770 | MS.gene20374 | 0.835316 | 1.80E-56 | -1.69E-46 |
| MS.gene050772 | MS.gene20374 | 0.875753 | 2.40E-68 | -1.69E-46 |
| MS.gene05079 | MS.gene20374 | -0.828655 | 7.97E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene20374 | 0.859838 | 3.14E-63 | -1.69E-46 |
| MS.gene050833 | MS.gene20374 | -0.807963 | 3.91E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene20374 | 0.831424 | 1.68E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene20374 | 0.825881 | 3.68E-54 | -1.69E-46 |
| MS.gene050876 | MS.gene20374 | 0.813423 | 2.58E-51 | -1.69E-46 |
| MS.gene050904 | MS.gene20374 | 0.807692 | 4.46E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene20374 | 0.821985 | 3.02E-53 | -1.69E-46 |
| MS.gene050986 | MS.gene20374 | 0.860661 | 1.77E-63 | -1.69E-46 |
| MS.gene05100 | MS.gene20374 | 0.840339 | 9.23E-58 | -1.69E-46 |
| MS.gene051138 | MS.gene20374 | -0.823277 | 1.51E-53 | -1.69E-46 |
| MS.gene051228 | MS.gene20374 | 0.895523 | 8.84E-76 | -1.69E-46 |
| MS.gene051317 | MS.gene20374 | 0.85301 | 3.17E-61 | -1.69E-46 |
| MS.gene051434 | MS.gene20374 | 0.846757 | 1.78E-59 | -1.69E-46 |
| MS.gene051551 | MS.gene20374 | 0.819313 | 1.24E-52 | -1.69E-46 |
| MS.gene051617 | MS.gene20374 | 0.865775 | 4.62E-65 | -1.69E-46 |
| MS.gene051651 | MS.gene20374 | -0.80204 | 6.78E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene20374 | 0.819273 | 1.27E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene20374 | 0.897605 | 1.20E-76 | -1.69E-46 |
| MS.gene051858 | MS.gene20374 | 0.831976 | 1.23E-55 | -1.69E-46 |
| MS.gene051874 | MS.gene20374 | 0.810785 | 9.70E-51 | -1.69E-46 |
| MS.gene051949 | MS.gene20374 | 0.883852 | 3.16E-71 | -1.69E-46 |
| MS.gene052129 | MS.gene20374 | -0.822899 | 1.85E-53 | -1.69E-46 |
| MS.gene052271 | MS.gene20374 | 0.871405 | 7.01E-67 | -1.69E-46 |
| MS.gene052290 | MS.gene20374 | 0.814105 | 1.83E-51 | -1.69E-46 |
| MS.gene052379 | MS.gene20374 | 0.881685 | 1.95E-70 | -1.69E-46 |
| MS.gene052486 | MS.gene20374 | 0.804242 | 2.37E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene20374 | 0.828964 | 6.71E-55 | -1.69E-46 |
| MS.gene052822 | MS.gene20374 | 0.82092 | 5.31E-53 | -1.69E-46 |
| MS.gene052870 | MS.gene20374 | 0.883335 | 4.89E-71 | -1.69E-46 |
| MS.gene052872 | MS.gene20374 | 0.883721 | 3.53E-71 | -1.69E-46 |
| MS.gene052916 | MS.gene20374 | 0.852128 | 5.65E-61 | -1.69E-46 |
| MS.gene052966 | MS.gene20374 | 0.817136 | 3.86E-52 | -1.69E-46 |
| MS.gene053009 | MS.gene20374 | 0.842191 | 3.01E-58 | -1.69E-46 |
| MS.gene053103 | MS.gene20374 | 0.804706 | 1.90E-49 | -1.69E-46 |
| MS.gene053104 | MS.gene20374 | 0.850785 | 1.36E-60 | -1.69E-46 |
| MS.gene053203 | MS.gene20374 | 0.811598 | 6.46E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene20374 | 0.819985 | 8.71E-53 | -1.69E-46 |
| MS.gene053213 | MS.gene20374 | 0.85473 | 1.01E-61 | -1.69E-46 |
| MS.gene053284 | MS.gene20374 | 0.827043 | 1.95E-54 | -1.69E-46 |
| MS.gene053285 | MS.gene20374 | 0.820901 | 5.37E-53 | -1.69E-46 |
| MS.gene053286 | MS.gene20374 | 0.852397 | 4.74E-61 | -1.69E-46 |
| MS.gene053322 | MS.gene20374 | 0.855621 | 5.58E-62 | -1.69E-46 |
| MS.gene053384 | MS.gene20374 | 0.826059 | 3.34E-54 | -1.69E-46 |
| MS.gene053479 | MS.gene20374 | 0.818917 | 1.53E-52 | -1.69E-46 |
| MS.gene053561 | MS.gene20374 | -0.803633 | 3.18E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene20374 | 0.828596 | 8.23E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene20374 | 0.8404 | 8.89E-58 | -1.69E-46 |
| MS.gene053824 | MS.gene20374 | 0.839585 | 1.45E-57 | -1.69E-46 |
| MS.gene053916 | MS.gene20374 | 0.850645 | 1.49E-60 | -1.69E-46 |
| MS.gene054374 | MS.gene20374 | 0.837939 | 3.86E-57 | -1.69E-46 |
| MS.gene054376 | MS.gene20374 | 0.802363 | 5.81E-49 | -1.69E-46 |
| MS.gene054408 | MS.gene20374 | 0.802716 | 4.92E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene20374 | 0.823246 | 1.54E-53 | -1.69E-46 |
| MS.gene054595 | MS.gene20374 | 0.811987 | 5.32E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene20374 | 0.857652 | 1.41E-62 | -1.69E-46 |
| MS.gene054642 | MS.gene20374 | 0.909616 | 4.68E-82 | -1.69E-46 |
| MS.gene05470 | MS.gene20374 | 0.827381 | 1.61E-54 | -1.69E-46 |
| MS.gene054954 | MS.gene20374 | 0.882816 | 7.58E-71 | -1.69E-46 |
| MS.gene05505 | MS.gene20374 | 0.817041 | 4.05E-52 | -1.69E-46 |
| MS.gene055154 | MS.gene20374 | -0.806544 | 7.81E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene20374 | 0.856124 | 3.98E-62 | -1.69E-46 |
| MS.gene055212 | MS.gene20374 | 0.814312 | 1.64E-51 | -1.69E-46 |
| MS.gene055224 | MS.gene20374 | 0.815457 | 9.16E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene20374 | 0.867443 | 1.36E-65 | -1.69E-46 |
| MS.gene055397 | MS.gene20374 | 0.853807 | 1.87E-61 | -1.69E-46 |
| MS.gene055499 | MS.gene20374 | 0.827026 | 1.96E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene20374 | 0.889168 | 3.08E-73 | -1.69E-46 |
| MS.gene055577 | MS.gene20374 | 0.849795 | 2.57E-60 | -1.69E-46 |
| MS.gene055634 | MS.gene20374 | 0.814845 | 1.25E-51 | -1.69E-46 |
| MS.gene055636 | MS.gene20374 | 0.86311 | 3.15E-64 | -1.69E-46 |
| MS.gene055638 | MS.gene20374 | 0.866407 | 2.92E-65 | -1.69E-46 |
| MS.gene055647 | MS.gene20374 | 0.83349 | 5.18E-56 | -1.69E-46 |
| MS.gene055722 | MS.gene20374 | 0.847934 | 8.44E-60 | -1.69E-46 |
| MS.gene055748 | MS.gene20374 | 0.878753 | 2.18E-69 | -1.69E-46 |
| MS.gene055750 | MS.gene20374 | 0.851108 | 1.10E-60 | -1.69E-46 |
| MS.gene055751 | MS.gene20374 | 0.883173 | 5.61E-71 | -1.69E-46 |
| MS.gene055776 | MS.gene20374 | 0.832814 | 7.62E-56 | -1.69E-46 |
| MS.gene05589 | MS.gene20374 | 0.819624 | 1.05E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene20374 | 0.858958 | 5.76E-63 | -1.69E-46 |
| MS.gene055941 | MS.gene20374 | 0.840276 | 9.58E-58 | -1.69E-46 |
| MS.gene055942 | MS.gene20374 | -0.80922 | 2.11E-50 | -1.69E-46 |
| MS.gene055956 | MS.gene20374 | -0.847497 | 1.11E-59 | -1.69E-46 |
| MS.gene056083 | MS.gene20374 | 0.818888 | 1.55E-52 | -1.69E-46 |
| MS.gene056374 | MS.gene20374 | 0.851172 | 1.06E-60 | -1.69E-46 |
| MS.gene056449 | MS.gene20374 | 0.807782 | 4.27E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene20374 | 0.830022 | 3.71E-55 | -1.69E-46 |
| MS.gene056510 | MS.gene20374 | 0.866611 | 2.51E-65 | -1.69E-46 |
| MS.gene056549 | MS.gene20374 | 0.83734 | 5.51E-57 | -1.69E-46 |
| MS.gene056609 | MS.gene20374 | 0.801496 | 8.76E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene20374 | 0.889318 | 2.70E-73 | -1.69E-46 |
| MS.gene056692 | MS.gene20374 | 0.871918 | 4.74E-67 | -1.69E-46 |
| MS.gene056856 | MS.gene20374 | -0.839194 | 1.83E-57 | -1.69E-46 |
| MS.gene056897 | MS.gene20374 | 0.843603 | 1.27E-58 | -1.69E-46 |
| MS.gene056898 | MS.gene20374 | 0.84601 | 2.84E-59 | -1.69E-46 |
| MS.gene056903 | MS.gene20374 | 0.828341 | 9.49E-55 | -1.69E-46 |
| MS.gene057011 | MS.gene20374 | 0.810982 | 8.79E-51 | -1.69E-46 |
| MS.gene057076 | MS.gene20374 | 0.836715 | 7.96E-57 | -1.69E-46 |
| MS.gene057129 | MS.gene20374 | 0.871684 | 5.67E-67 | -1.69E-46 |
| MS.gene057246 | MS.gene20374 | 0.870559 | 1.33E-66 | -1.69E-46 |
| MS.gene057331 | MS.gene20374 | 0.850262 | 1.90E-60 | -1.69E-46 |
| MS.gene057416 | MS.gene20374 | 0.852167 | 5.51E-61 | -1.69E-46 |
| MS.gene057658 | MS.gene20374 | 0.82175 | 3.42E-53 | -1.69E-46 |
| MS.gene057831 | MS.gene20374 | 0.836028 | 1.19E-56 | -1.69E-46 |
| MS.gene057926 | MS.gene20374 | 0.806779 | 6.97E-50 | -1.69E-46 |
| MS.gene058323 | MS.gene20374 | 0.804285 | 2.32E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene20374 | -0.806795 | 6.92E-50 | -1.69E-46 |
| MS.gene058335 | MS.gene20374 | 0.813596 | 2.36E-51 | -1.69E-46 |
| MS.gene058338 | MS.gene20374 | 0.80251 | 5.42E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene20374 | 0.824914 | 6.24E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene20374 | 0.900674 | 5.79E-78 | -1.69E-46 |
| MS.gene058544 | MS.gene20374 | 0.860289 | 2.29E-63 | -1.69E-46 |
| MS.gene058603 | MS.gene20374 | -0.80355 | 3.30E-49 | -1.69E-46 |
| MS.gene058723 | MS.gene20374 | 0.868233 | 7.60E-66 | -1.69E-46 |
| MS.gene058773 | MS.gene20374 | 0.892658 | 1.30E-74 | -1.69E-46 |
| MS.gene058838 | MS.gene20374 | 0.834022 | 3.81E-56 | -1.69E-46 |
| MS.gene059022 | MS.gene20374 | 0.879573 | 1.12E-69 | -1.69E-46 |
| MS.gene059023 | MS.gene20374 | 0.865486 | 5.70E-65 | -1.69E-46 |
| MS.gene059029 | MS.gene20374 | 0.888431 | 5.94E-73 | -1.69E-46 |
| MS.gene059079 | MS.gene20374 | 0.873559 | 1.34E-67 | -1.69E-46 |
| MS.gene05912 | MS.gene20374 | 0.809472 | 1.86E-50 | -1.69E-46 |
| MS.gene05913 | MS.gene20374 | 0.85379 | 1.89E-61 | -1.69E-46 |
| MS.gene05914 | MS.gene20374 | 0.812785 | 3.56E-51 | -1.69E-46 |
| MS.gene059181 | MS.gene20374 | 0.801231 | 9.93E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene20374 | 0.827928 | 1.19E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene20374 | 0.815264 | 1.01E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene20374 | 0.902044 | 1.45E-78 | -1.69E-46 |
| MS.gene059718 | MS.gene20374 | 0.868039 | 8.78E-66 | -1.69E-46 |
| MS.gene059756 | MS.gene20374 | 0.839738 | 1.32E-57 | -1.69E-46 |
| MS.gene059858 | MS.gene20374 | 0.820793 | 5.69E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene20374 | 0.860427 | 2.08E-63 | -1.69E-46 |
| MS.gene059902 | MS.gene20374 | 0.829331 | 5.47E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene20374 | 0.869718 | 2.51E-66 | -1.69E-46 |
| MS.gene060337 | MS.gene20374 | -0.804681 | 1.92E-49 | -1.69E-46 |
| MS.gene060341 | MS.gene20374 | 0.814827 | 1.26E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene20374 | 0.845072 | 5.10E-59 | -1.69E-46 |
| MS.gene060728 | MS.gene20374 | 0.809885 | 1.52E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene20374 | 0.884512 | 1.80E-71 | -1.69E-46 |
| MS.gene06077 | MS.gene20374 | 0.827871 | 1.23E-54 | -1.69E-46 |
| MS.gene060804 | MS.gene20374 | 0.816483 | 5.40E-52 | -1.69E-46 |
| MS.gene060818 | MS.gene20374 | 0.856156 | 3.89E-62 | -1.69E-46 |
| MS.gene060835 | MS.gene20374 | 0.801503 | 8.73E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene20374 | 0.841525 | 4.51E-58 | -1.69E-46 |
| MS.gene060981 | MS.gene20374 | 0.819068 | 1.41E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene20374 | 0.843932 | 1.03E-58 | -1.69E-46 |
| MS.gene061041 | MS.gene20374 | 0.824621 | 7.31E-54 | -1.69E-46 |
| MS.gene061134 | MS.gene20374 | 0.803811 | 2.92E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene20374 | 0.880847 | 3.92E-70 | -1.69E-46 |
| MS.gene061200 | MS.gene20374 | 0.8453 | 4.43E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20374.t1 | MTR_5g011460 | 88.742 | 151 | 12 | 1 | 1 | 146 | 1 | 151 | 5.08e-96 | 276 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20374.t1 | AT4G22830 | 81.818 | 77 | 14 | 0 | 63 | 139 | 82 | 158 | 9.15e-44 | 144 |
| MS.gene20374.t1 | AT4G22830 | 81.818 | 77 | 14 | 0 | 63 | 139 | 90 | 166 | 2.81e-43 | 143 |
Find 57 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAGGTATAATATAGATTT+TGG | 0.154176 | 5.1:-4886461 | None:intergenic |
| ATTTGACGGAAACGGGATTT+TGG | 0.159414 | 5.1:-4883875 | None:intergenic |
| ATGGCTTTGGTGTGGCAATA+TGG | 0.236845 | 5.1:+4884223 | MS.gene20374:CDS |
| CTCTTGAATTTGACGGAAAC+GGG | 0.292176 | 5.1:-4883882 | None:intergenic |
| GCGGTTGGAGTTGAAATTAT+TGG | 0.319037 | 5.1:+4886337 | MS.gene20374:CDS |
| TGGCAATATGGGGAGAAATC+TGG | 0.321722 | 5.1:+4884235 | MS.gene20374:CDS |
| AAGCTTGGAAGGGTCTTTCC+TGG | 0.322451 | 5.1:+4884263 | MS.gene20374:CDS |
| TGGCTTTGGTGTGGCAATAT+GGG | 0.345301 | 5.1:+4884224 | MS.gene20374:CDS |
| ATGCACTGTCTTTGCCCACT+TGG | 0.377337 | 5.1:+4884037 | MS.gene20374:CDS |
| TTGACAACTCTTGAATTTGA+CGG | 0.395572 | 5.1:-4883889 | None:intergenic |
| AATAACAGTAGCTATCGATT+TGG | 0.397461 | 5.1:+4883910 | MS.gene20374:CDS |
| GAGGAGAAACCGGCCGGCCT+TGG | 0.405303 | 5.1:-4886408 | None:intergenic |
| ACAACAAAAGGAGGAGAAAC+CGG | 0.408742 | 5.1:-4886418 | None:intergenic |
| AAGGATTATAGCTATGGCTT+TGG | 0.426099 | 5.1:+4884210 | MS.gene20374:intron |
| ACTCTTGAATTTGACGGAAA+CGG | 0.426134 | 5.1:-4883883 | None:intergenic |
| AGCTTGGAAGGGTCTTTCCT+GGG | 0.439797 | 5.1:+4884264 | MS.gene20374:CDS |
| GGCAATATGGGGAGAAATCT+GGG | 0.453113 | 5.1:+4884236 | MS.gene20374:CDS |
| TGCACTGTCTTTGCCCACTT+GGG | 0.453403 | 5.1:+4884038 | MS.gene20374:CDS |
| ATCTATATTATACCTAAGGT+TGG | 0.458307 | 5.1:+4886466 | MS.gene20374:CDS |
| GAAGGGTCTTTCCTGGGGCA+TGG | 0.465621 | 5.1:+4884270 | MS.gene20374:CDS |
| AAGTGGGAGAGACCAGCTTT+CGG | 0.467106 | 5.1:-4883943 | None:intergenic |
| TTTCTACAACGTTGAGGAAG+TGG | 0.473835 | 5.1:-4883960 | None:intergenic |
| TTGTTGTAGGTACCTCTACT+TGG | 0.477528 | 5.1:+4885228 | MS.gene20374:intron |
| ATTCACTCATTCCCAACCTT+AGG | 0.481756 | 5.1:-4886478 | None:intergenic |
| TCTATATTATACCTAAGGTT+GGG | 0.486139 | 5.1:+4886467 | MS.gene20374:CDS |
| AGAAATCTGGGCATGAAGCT+TGG | 0.487427 | 5.1:+4884248 | MS.gene20374:CDS |
| CAATTGTTGACAGCAAAAGA+TGG | 0.493198 | 5.1:-4886376 | None:intergenic |
| AAACCGGCCGGCCTTGGTGA+TGG | 0.496808 | 5.1:-4886402 | None:intergenic |
| ATTGTTGCCATCACCAAGGC+CGG | 0.501228 | 5.1:+4886395 | MS.gene20374:CDS |
| ACAGCATCAACAACAACAAA+AGG | 0.501401 | 5.1:-4886430 | None:intergenic |
| CAAAATCTATATTATACCTA+AGG | 0.501870 | 5.1:+4886462 | MS.gene20374:CDS |
| TTGTAGGTACCTCTACTTGG+TGG | 0.514763 | 5.1:+4885231 | MS.gene20374:intron |
| ATGTCTCCAGCGTCGTTGAA+TGG | 0.515806 | 5.1:+4884067 | MS.gene20374:CDS |
| ATCTGGGCATGAAGCTTGGA+AGG | 0.518052 | 5.1:+4884252 | MS.gene20374:CDS |
| CAACGTAGCTGCAGCAGCCA+TGG | 0.520101 | 5.1:-4883824 | None:intergenic |
| GCCTAGTTGTGAAAGGCGGT+TGG | 0.526407 | 5.1:+4886322 | MS.gene20374:intron |
| GGAACCTTAAAACCGAAAGC+TGG | 0.539599 | 5.1:+4883931 | MS.gene20374:CDS |
| TCTTGAAGTTCAAGTTGAAG+TGG | 0.545704 | 5.1:-4884006 | None:intergenic |
| TTGCCATCACCAAGGCCGGC+CGG | 0.556855 | 5.1:+4886399 | MS.gene20374:CDS |
| GCTTGGAAGGGTCTTTCCTG+GGG | 0.562740 | 5.1:+4884265 | MS.gene20374:CDS |
| TTCTACAACGTTGAGGAAGT+GGG | 0.569375 | 5.1:-4883959 | None:intergenic |
| GGCTTTGGTGTGGCAATATG+GGG | 0.589415 | 5.1:+4884225 | MS.gene20374:CDS |
| AGTGGGCAAAGACAGTGCAT+TGG | 0.590819 | 5.1:-4884034 | None:intergenic |
| TTATAACTCTGACTCCCTTG+AGG | 0.597717 | 5.1:+4885284 | MS.gene20374:CDS |
| GGCAAAGACAGTGCATTGGA+TGG | 0.598751 | 5.1:-4884030 | None:intergenic |
| CAAAAGGAGGAGAAACCGGC+CGG | 0.609666 | 5.1:-4886414 | None:intergenic |
| TTGATACCATTCAACGACGC+TGG | 0.610070 | 5.1:-4884073 | None:intergenic |
| AAAAGGCTTTCTCACCTCAA+GGG | 0.622988 | 5.1:-4885298 | None:intergenic |
| GCATCAACAACAACAAAAGG+AGG | 0.629876 | 5.1:-4886427 | None:intergenic |
| GGAGACATGAACAGCCCAAG+TGG | 0.630578 | 5.1:-4884052 | None:intergenic |
| CAAAATGCTCCACCAAGTAG+AGG | 0.635947 | 5.1:-4885240 | None:intergenic |
| AAGTTGTTTCTACAACGTTG+AGG | 0.647322 | 5.1:-4883966 | None:intergenic |
| AACAATTGTTGCCATCACCA+AGG | 0.647745 | 5.1:+4886391 | MS.gene20374:CDS |
| TTATAGCTATGGCTTTGGTG+TGG | 0.649963 | 5.1:+4884215 | MS.gene20374:CDS |
| AAGTGGAAGTTGAATGTACG+AGG | 0.666941 | 5.1:-4883989 | None:intergenic |
| TCTGGGCATGAAGCTTGGAA+GGG | 0.672398 | 5.1:+4884253 | MS.gene20374:CDS |
| GAGACATGAACAGCCCAAGT+GGG | 0.672772 | 5.1:-4884051 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATATAAAAAAAAA+AGG | + | chr5.1:4884191-4884210 | MS.gene20374:intron | 0.0% |
| !!! | TTTTTTTTTTATTTTTTTTT+TGG | - | chr5.1:4885013-4885032 | None:intergenic | 0.0% |
| !! | TTACTGTTATTATTAATATT+AGG | + | chr5.1:4884330-4884349 | MS.gene20374:intron | 10.0% |
| !!! | AAAAAATTGATTTATCATTT+TGG | + | chr5.1:4885029-4885048 | MS.gene20374:intron | 10.0% |
| !!! | AAAAATTGATTTATCATTTT+GGG | + | chr5.1:4885030-4885049 | MS.gene20374:intron | 10.0% |
| !!! | ATATAAATAATCTCTTTTTA+TGG | - | chr5.1:4886192-4886211 | None:intergenic | 10.0% |
| !! | TCTAGTAGTAATAAATTAAT+GGG | - | chr5.1:4885525-4885544 | None:intergenic | 15.0% |
| !! | TTCTAGTAGTAATAAATTAA+TGG | - | chr5.1:4885526-4885545 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTATCATTTTG+GGG | + | chr5.1:4885031-4885050 | MS.gene20374:intron | 15.0% |
| !!! | CATTCTTTTTTTGTTTTTTT+TGG | + | chr5.1:4884737-4884756 | MS.gene20374:intron | 15.0% |
| !!! | TTAAAGACATTTTAAATATG+TGG | - | chr5.1:4884802-4884821 | None:intergenic | 15.0% |
| !! | AAAAAAAAGGATTATAGCTA+TGG | + | chr5.1:4884204-4884223 | MS.gene20374:intron | 20.0% |
| !! | ATATTTGAACACAATTTGAA+TGG | + | chr5.1:4884625-4884644 | MS.gene20374:intron | 20.0% |
| !! | CAAAATCTATATTATACCTA+AGG | + | chr5.1:4886462-4886481 | MS.gene20374:CDS | 20.0% |
| !! | TAAAAAATTGAGTATAGTTG+AGG | + | chr5.1:4884378-4884397 | MS.gene20374:intron | 20.0% |
| !! | TAATTTAGGAAAATGTTAAC+CGG | + | chr5.1:4885343-4885362 | MS.gene20374:intron | 20.0% |
| !! | TACAACAATTAGATAACATA+GGG | - | chr5.1:4885216-4885235 | None:intergenic | 20.0% |
| !! | TACAGAACATCTATTAATTT+AGG | + | chr5.1:4885329-4885348 | MS.gene20374:intron | 20.0% |
| !! | TTAAAATACTAGAGTAGTAT+TGG | - | chr5.1:4884155-4884174 | None:intergenic | 20.0% |
| !! | TTTATATTCATTGTCATGAT+AGG | + | chr5.1:4886205-4886224 | MS.gene20374:intron | 20.0% |
| !!! | ATAATCTCTTTTTATGGAAT+TGG | - | chr5.1:4886186-4886205 | None:intergenic | 20.0% |
| !!! | CTTAGGTATAATATAGATTT+TGG | - | chr5.1:4886464-4886483 | None:intergenic | 20.0% |
| ! | ATCTATATTATACCTAAGGT+TGG | + | chr5.1:4886466-4886485 | MS.gene20374:CDS | 25.0% |
| ! | ATTATACAAGAAGATCCATT+CGG | - | chr5.1:4885581-4885600 | None:intergenic | 25.0% |
| ! | CATCATATAAGTGTTTATCA+TGG | - | chr5.1:4886060-4886079 | None:intergenic | 25.0% |
| ! | CTACAACAATTAGATAACAT+AGG | - | chr5.1:4885217-4885236 | None:intergenic | 25.0% |
| ! | CTATGTTATCTAATTGTTGT+AGG | + | chr5.1:4885215-4885234 | MS.gene20374:intron | 25.0% |
| ! | GTATCTAAACATTATACGTT+TGG | - | chr5.1:4884940-4884959 | None:intergenic | 25.0% |
| ! | TAAACAACACTTGAAAGAAT+AGG | - | chr5.1:4885861-4885880 | None:intergenic | 25.0% |
| ! | TCTATATTATACCTAAGGTT+GGG | + | chr5.1:4886467-4886486 | MS.gene20374:CDS | 25.0% |
| ! | TTAATAGATGTTCTGTATAG+AGG | - | chr5.1:4885326-4885345 | None:intergenic | 25.0% |
| ! | TTTAAATATGTGGTTACATC+CGG | - | chr5.1:4884792-4884811 | None:intergenic | 25.0% |
| !! | ATTTTGAACGTCATTAACTA+TGG | + | chr5.1:4884554-4884573 | MS.gene20374:intron | 25.0% |
| !! | TCAAAATTGCGTTTGATTTA+TGG | - | chr5.1:4884541-4884560 | None:intergenic | 25.0% |
| AAATCTGGTCTATTAGGAAT+TGG | + | chr5.1:4886127-4886146 | MS.gene20374:intron | 30.0% | |
| AAGTCCTACATTTCTTGTAA+AGG | + | chr5.1:4884448-4884467 | MS.gene20374:intron | 30.0% | |
| AATCGTGATTAATGACATGT+AGG | + | chr5.1:4884681-4884700 | MS.gene20374:intron | 30.0% | |
| ACATTTCTTGTAAAGGAAGA+AGG | + | chr5.1:4884455-4884474 | MS.gene20374:intron | 30.0% | |
| ACTACATTTGCAATTGCAAA+TGG | - | chr5.1:4885178-4885197 | None:intergenic | 30.0% | |
| ATCGTGATTAATGACATGTA+GGG | + | chr5.1:4884682-4884701 | MS.gene20374:intron | 30.0% | |
| ATGTTGAGAGAAAATCATTC+AGG | - | chr5.1:4885649-4885668 | None:intergenic | 30.0% | |
| CATTTAGGGGACATTTAAAT+TGG | + | chr5.1:4885922-4885941 | MS.gene20374:intron | 30.0% | |
| GCAAAATTCTGAATGTATTG+TGG | - | chr5.1:4886259-4886278 | None:intergenic | 30.0% | |
| GTTATATTCATTATCACCAC+CGG | + | chr5.1:4884770-4884789 | MS.gene20374:intron | 30.0% | |
| TCTTCCTTTACAAGAAATGT+AGG | - | chr5.1:4884455-4884474 | None:intergenic | 30.0% | |
| TGTTCTGTATAGAGGAAAAA+AGG | - | chr5.1:4885318-4885337 | None:intergenic | 30.0% | |
| TTGACAACTCTTGAATTTGA+CGG | - | chr5.1:4883892-4883911 | None:intergenic | 30.0% | |
| ! | AATAACAGTAGCTATCGATT+TGG | + | chr5.1:4883910-4883929 | MS.gene20374:CDS | 30.0% |
| ! | ACTACTAGAATTGTTGATTG+AGG | + | chr5.1:4885536-4885555 | MS.gene20374:intron | 30.0% |
| ! | CGTCATTAACTATGGTTTTT+AGG | + | chr5.1:4884562-4884581 | MS.gene20374:intron | 30.0% |
| ! | CTACTAGAATTGTTGATTGA+GGG | + | chr5.1:4885537-4885556 | MS.gene20374:intron | 30.0% |
| ! | CTGGTTAAGGTATCTAAAAA+AGG | - | chr5.1:4885476-4885495 | None:intergenic | 30.0% |
| ! | TGTCATGAATTTGTTCCATA+AGG | - | chr5.1:4885791-4885810 | None:intergenic | 30.0% |
| ! | TTTAACTTATCCGTTCTATC+TGG | + | chr5.1:4884103-4884122 | MS.gene20374:intron | 30.0% |
| !! | AATTAATGGGTTGTGTTAAC+CGG | - | chr5.1:4885512-4885531 | None:intergenic | 30.0% |
| !! | CATTCGGCTTTAAATATGAA+CGG | - | chr5.1:4885565-4885584 | None:intergenic | 30.0% |
| AAGGATTATAGCTATGGCTT+TGG | + | chr5.1:4884210-4884229 | MS.gene20374:intron | 35.0% | |
| AATGCCAAATGGTCAAAATC+TGG | + | chr5.1:4886112-4886131 | MS.gene20374:intron | 35.0% | |
| ACAGCATCAACAACAACAAA+AGG | - | chr5.1:4886433-4886452 | None:intergenic | 35.0% | |
| ACCAACCAAGACTATATACA+TGG | + | chr5.1:4884480-4884499 | MS.gene20374:intron | 35.0% | |
| ACTCTTGAATTTGACGGAAA+CGG | - | chr5.1:4883886-4883905 | None:intergenic | 35.0% | |
| AGAGTCCATGTATATAGTCT+TGG | - | chr5.1:4884488-4884507 | None:intergenic | 35.0% | |
| AGCAAATTTCGACAACAATC+TGG | - | chr5.1:4884829-4884848 | None:intergenic | 35.0% | |
| CAATTGTTGACAGCAAAAGA+TGG | - | chr5.1:4886379-4886398 | None:intergenic | 35.0% | |
| GCGCTTAAACACTATACATT+CGG | + | chr5.1:4885090-4885109 | MS.gene20374:intron | 35.0% | |
| GTTGAGGTAGTTCAAATTGT+TGG | + | chr5.1:4884394-4884413 | MS.gene20374:intron | 35.0% | |
| TGATTAATGACATGTAGGGA+CGG | + | chr5.1:4884686-4884705 | MS.gene20374:intron | 35.0% | |
| TGGTCAAAATCTGGTCTATT+AGG | + | chr5.1:4886121-4886140 | MS.gene20374:intron | 35.0% | |
| TGGTCTATTAGGAATTGGAT+TGG | + | chr5.1:4886132-4886151 | MS.gene20374:intron | 35.0% | |
| TGTTTATCATGGAGAGCTTA+TGG | - | chr5.1:4886049-4886068 | None:intergenic | 35.0% | |
| TTGTCACAAAACACCATGAA+TGG | + | chr5.1:4885606-4885625 | MS.gene20374:intron | 35.0% | |
| ! | CGTTCATATTTAAAGCCGAA+TGG | + | chr5.1:4885563-4885582 | MS.gene20374:intron | 35.0% |
| ! | TACTAGAGTACCAGATAGAA+CGG | - | chr5.1:4884116-4884135 | None:intergenic | 35.0% |
| ! | TCCATGTATATAGTCTTGGT+TGG | - | chr5.1:4884484-4884503 | None:intergenic | 35.0% |
| !! | AAGTTGTTTCTACAACGTTG+AGG | - | chr5.1:4883969-4883988 | None:intergenic | 35.0% |
| !! | AATTTGCTTTTAAGCTCCAG+CGG | - | chr5.1:4885826-4885845 | None:intergenic | 35.0% |
| !! | ATTTTGGGAGTAGAACAACA+TGG | - | chr5.1:4883862-4883881 | None:intergenic | 35.0% |
| !! | GTTCAAATTGTTGGTGTTGT+TGG | + | chr5.1:4884403-4884422 | MS.gene20374:intron | 35.0% |
| !! | TAGACCAGATTTTGACCATT+TGG | - | chr5.1:4886119-4886138 | None:intergenic | 35.0% |
| !! | TCTTGAAGTTCAAGTTGAAG+TGG | - | chr5.1:4884009-4884028 | None:intergenic | 35.0% |
| !! | TGTGATGAGATTTTGATCAG+AGG | - | chr5.1:4886163-4886182 | None:intergenic | 35.0% |
| AAAAAGGCTTTCTCACCTCA+AGG | - | chr5.1:4885302-4885321 | None:intergenic | 40.0% | |
| AAAAGGCTTTCTCACCTCAA+GGG | - | chr5.1:4885301-4885320 | None:intergenic | 40.0% | |
| AAAGCACAGGTTGCATTTAG+GGG | + | chr5.1:4885909-4885928 | MS.gene20374:intron | 40.0% | |
| AAATATGTGGTTACATCCGG+TGG | - | chr5.1:4884789-4884808 | None:intergenic | 40.0% | |
| AACAATTGTTGCCATCACCA+AGG | + | chr5.1:4886391-4886410 | MS.gene20374:CDS | 40.0% | |
| AACAGTATCACGAGTGCTTA+TGG | - | chr5.1:4885969-4885988 | None:intergenic | 40.0% | |
| AAGTGGAAGTTGAATGTACG+AGG | - | chr5.1:4883992-4884011 | None:intergenic | 40.0% | |
| ACAAAGCAAAGCTGAAAGCT+GGG | + | chr5.1:4886279-4886298 | MS.gene20374:intron | 40.0% | |
| ACAACAAAAGGAGGAGAAAC+CGG | - | chr5.1:4886421-4886440 | None:intergenic | 40.0% | |
| AGCAAGTATTTCTCTGCTAC+TGG | + | chr5.1:4885124-4885143 | MS.gene20374:intron | 40.0% | |
| ATTTGCCTAGTTGTGAAAGG+CGG | + | chr5.1:4886318-4886337 | MS.gene20374:intron | 40.0% | |
| CAAAACACCATGAATGGCTA+CGG | + | chr5.1:4885612-4885631 | MS.gene20374:intron | 40.0% | |
| CAAAGCACAGGTTGCATTTA+GGG | + | chr5.1:4885908-4885927 | MS.gene20374:intron | 40.0% | |
| CTCATTTGCCTAGTTGTGAA+AGG | + | chr5.1:4886315-4886334 | MS.gene20374:intron | 40.0% | |
| CTCTTGAATTTGACGGAAAC+GGG | - | chr5.1:4883885-4883904 | None:intergenic | 40.0% | |
| GCATCAACAACAACAAAAGG+AGG | - | chr5.1:4886430-4886449 | None:intergenic | 40.0% | |
| GCGGTTGGAGTTGAAATTAT+TGG | + | chr5.1:4886337-4886356 | MS.gene20374:CDS | 40.0% | |
| GTAGCAGAGAAATACTTGCT+TGG | - | chr5.1:4885124-4885143 | None:intergenic | 40.0% | |
| TAAAAAACTTACCATGCCCC+AGG | - | chr5.1:4884284-4884303 | None:intergenic | 40.0% | |
| TCACAACTAGGCAAATGAGA+TGG | - | chr5.1:4886314-4886333 | None:intergenic | 40.0% | |
| TGCAAGAAAAAGCAAAGCAC+AGG | + | chr5.1:4885896-4885915 | MS.gene20374:intron | 40.0% | |
| TTAGACAGCATATGAAGGAC+TGG | - | chr5.1:4886088-4886107 | None:intergenic | 40.0% | |
| TTATAACTCTGACTCCCTTG+AGG | + | chr5.1:4885284-4885303 | MS.gene20374:CDS | 40.0% | |
| TTCTACAACGTTGAGGAAGT+GGG | - | chr5.1:4883962-4883981 | None:intergenic | 40.0% | |
| TTGTTGTAGGTACCTCTACT+TGG | + | chr5.1:4885228-4885247 | MS.gene20374:intron | 40.0% | |
| TTTCTACAACGTTGAGGAAG+TGG | - | chr5.1:4883963-4883982 | None:intergenic | 40.0% | |
| ! | ATTTGACGGAAACGGGATTT+TGG | - | chr5.1:4883878-4883897 | None:intergenic | 40.0% |
| ! | CATTTTACTTGTCGCAGCAA+TGG | + | chr5.1:4885678-4885697 | MS.gene20374:intron | 40.0% |
| ! | TCGCTTTAGACAGCATATGA+AGG | - | chr5.1:4886093-4886112 | None:intergenic | 40.0% |
| ! | TGTCTAAAGCGAATGCCAAA+TGG | + | chr5.1:4886101-4886120 | MS.gene20374:intron | 40.0% |
| ! | TTTGACGGAAACGGGATTTT+GGG | - | chr5.1:4883877-4883896 | None:intergenic | 40.0% |
| !! | ACTCTAGAGCTAGTCTTGTA+TGG | + | chr5.1:4884907-4884926 | MS.gene20374:intron | 40.0% |
| !! | TTATAGCTATGGCTTTGGTG+TGG | + | chr5.1:4884215-4884234 | MS.gene20374:CDS | 40.0% |
| AAACCTTCCGTAGCCATTCA+TGG | - | chr5.1:4885622-4885641 | None:intergenic | 45.0% | |
| ACACACACAGAGATGCAAAG+AGG | - | chr5.1:4885064-4885083 | None:intergenic | 45.0% | |
| AGAAATCTGGGCATGAAGCT+TGG | + | chr5.1:4884248-4884267 | MS.gene20374:CDS | 45.0% | |
| CAAAATGCTCCACCAAGTAG+AGG | - | chr5.1:4885243-4885262 | None:intergenic | 45.0% | |
| CACAAAGCAAAGCTGAAAGC+TGG | + | chr5.1:4886278-4886297 | MS.gene20374:intron | 45.0% | |
| CATTGTCATGATAGGCAGCT+TGG | + | chr5.1:4886213-4886232 | MS.gene20374:intron | 45.0% | |
| GACAGTTTAAACTAAGCCGC+TGG | + | chr5.1:4885807-4885826 | MS.gene20374:intron | 45.0% | |
| GCAAAGCACAGGTTGCATTT+AGG | + | chr5.1:4885907-4885926 | MS.gene20374:intron | 45.0% | |
| GGAACCTTAAAACCGAAAGC+TGG | + | chr5.1:4883931-4883950 | MS.gene20374:CDS | 45.0% | |
| GGCAATATGGGGAGAAATCT+GGG | + | chr5.1:4884236-4884255 | MS.gene20374:CDS | 45.0% | |
| TCACGAGTGCTTATGGTAGT+AGG | - | chr5.1:4885962-4885981 | None:intergenic | 45.0% | |
| TGGCAATATGGGGAGAAATC+TGG | + | chr5.1:4884235-4884254 | MS.gene20374:CDS | 45.0% | |
| TTGATACCATTCAACGACGC+TGG | - | chr5.1:4884076-4884095 | None:intergenic | 45.0% | |
| TTGTAGGTACCTCTACTTGG+TGG | + | chr5.1:4885231-4885250 | MS.gene20374:intron | 45.0% | |
| ! | GAGACCAGCTTTCGGTTTTA+AGG | - | chr5.1:4883938-4883957 | None:intergenic | 45.0% |
| ! | GAGCATTTTGTGCATGCACA+TGG | + | chr5.1:4885253-4885272 | MS.gene20374:CDS | 45.0% |
| !! | ATGGCTTTGGTGTGGCAATA+TGG | + | chr5.1:4884223-4884242 | MS.gene20374:CDS | 45.0% |
| !! | GACTAGCTCTAGAGTAGCAA+TGG | - | chr5.1:4884902-4884921 | None:intergenic | 45.0% |
| !! | TGGCTTTGGTGTGGCAATAT+GGG | + | chr5.1:4884224-4884243 | MS.gene20374:CDS | 45.0% |
| AAAATGTTAACCGGTGCCCC+CGG | + | chr5.1:4885352-4885371 | MS.gene20374:intron | 50.0% | |
| AAGCTTGGAAGGGTCTTTCC+TGG | + | chr5.1:4884263-4884282 | MS.gene20374:CDS | 50.0% | |
| AAGTGGGAGAGACCAGCTTT+CGG | - | chr5.1:4883946-4883965 | None:intergenic | 50.0% | |
| ACACCATGAATGGCTACGGA+AGG | + | chr5.1:4885616-4885635 | MS.gene20374:intron | 50.0% | |
| AGATACCTTAACCAGTGCCC+CGG | + | chr5.1:4885481-4885500 | MS.gene20374:intron | 50.0% | |
| AGCTTGGAAGGGTCTTTCCT+GGG | + | chr5.1:4884264-4884283 | MS.gene20374:CDS | 50.0% | |
| AGTGGGCAAAGACAGTGCAT+TGG | - | chr5.1:4884037-4884056 | None:intergenic | 50.0% | |
| ATCTGGGCATGAAGCTTGGA+AGG | + | chr5.1:4884252-4884271 | MS.gene20374:CDS | 50.0% | |
| ATGCACTGTCTTTGCCCACT+TGG | + | chr5.1:4884037-4884056 | MS.gene20374:CDS | 50.0% | |
| ATGTCTCCAGCGTCGTTGAA+TGG | + | chr5.1:4884067-4884086 | MS.gene20374:CDS | 50.0% | |
| ATTGTTGCCATCACCAAGGC+CGG | + | chr5.1:4886395-4886414 | MS.gene20374:CDS | 50.0% | |
| CAAAGCTGAAAGCTGGGCTT+TGG | + | chr5.1:4886285-4886304 | MS.gene20374:intron | 50.0% | |
| GAGACATGAACAGCCCAAGT+GGG | - | chr5.1:4884054-4884073 | None:intergenic | 50.0% | |
| GCAACAACGTCTCGACCTTA+TGG | + | chr5.1:4885773-4885792 | MS.gene20374:intron | 50.0% | |
| GGCAAAGACAGTGCATTGGA+TGG | - | chr5.1:4884033-4884052 | None:intergenic | 50.0% | |
| TCCAACCGCCTTTCACAACT+AGG | - | chr5.1:4886326-4886345 | None:intergenic | 50.0% | |
| TCTGGGCATGAAGCTTGGAA+GGG | + | chr5.1:4884253-4884272 | MS.gene20374:CDS | 50.0% | |
| TGCACTGTCTTTGCCCACTT+GGG | + | chr5.1:4884038-4884057 | MS.gene20374:CDS | 50.0% | |
| TGTCATGATAGGCAGCTTGG+TGG | + | chr5.1:4886216-4886235 | MS.gene20374:intron | 50.0% | |
| ! | ATAGGCAGCTTGGTGGATGT+TGG | + | chr5.1:4886223-4886242 | MS.gene20374:intron | 50.0% |
| ! | GGCTTTGGTGTGGCAATATG+GGG | + | chr5.1:4884225-4884244 | MS.gene20374:CDS | 50.0% |
| AAATGTTAACCGGTGCCCCC+GGG | + | chr5.1:4885353-4885372 | MS.gene20374:intron | 55.0% | |
| ATACCTTAACCAGTGCCCCG+GGG | + | chr5.1:4885483-4885502 | MS.gene20374:intron | 55.0% | |
| CAAAAGGAGGAGAAACCGGC+CGG | - | chr5.1:4886417-4886436 | None:intergenic | 55.0% | |
| GATACCTTAACCAGTGCCCC+GGG | + | chr5.1:4885482-4885501 | MS.gene20374:intron | 55.0% | |
| GCCTAGTTGTGAAAGGCGGT+TGG | + | chr5.1:4886322-4886341 | MS.gene20374:intron | 55.0% | |
| GCTTGGAAGGGTCTTTCCTG+GGG | + | chr5.1:4884265-4884284 | MS.gene20374:CDS | 55.0% | |
| GGAGACATGAACAGCCCAAG+TGG | - | chr5.1:4884055-4884074 | None:intergenic | 55.0% | |
| TGCTTCCTTAACCAGTGCCC+CGG | - | chr5.1:4885374-4885393 | None:intergenic | 55.0% | |
| ! | GCAGCTTGGTGGATGTTGGT+TGG | + | chr5.1:4886227-4886246 | MS.gene20374:intron | 55.0% |
| AATGTTAACCGGTGCCCCCG+GGG | + | chr5.1:4885354-4885373 | MS.gene20374:intron | 60.0% | |
| CTTCCTTAACCAGTGCCCCG+GGG | - | chr5.1:4885372-4885391 | None:intergenic | 60.0% | |
| GAAGGGTCTTTCCTGGGGCA+TGG | + | chr5.1:4884270-4884289 | MS.gene20374:CDS | 60.0% | |
| GCTTCCTTAACCAGTGCCCC+GGG | - | chr5.1:4885373-4885392 | None:intergenic | 60.0% | |
| GTTGTGTTAACCGGTGCCCC+CGG | - | chr5.1:4885503-4885522 | None:intergenic | 60.0% | |
| TACCTTAACCAGTGCCCCGG+GGG | + | chr5.1:4885484-4885503 | MS.gene20374:intron | 60.0% | |
| TTCCTTAACCAGTGCCCCGG+GGG | - | chr5.1:4885371-4885390 | None:intergenic | 60.0% | |
| TTGTGTTAACCGGTGCCCCC+GGG | - | chr5.1:4885502-4885521 | None:intergenic | 60.0% | |
| AAACCGGCCGGCCTTGGTGA+TGG | - | chr5.1:4886405-4886424 | None:intergenic | 65.0% | |
| TGTGTTAACCGGTGCCCCCG+GGG | - | chr5.1:4885501-4885520 | None:intergenic | 65.0% | |
| TTGCCATCACCAAGGCCGGC+CGG | + | chr5.1:4886399-4886418 | MS.gene20374:CDS | 65.0% | |
| GAGGAGAAACCGGCCGGCCT+TGG | - | chr5.1:4886411-4886430 | None:intergenic | 70.0% | |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | + | chr5.1:4885366-4885385 | MS.gene20374:intron | 70.0% |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | - | chr5.1:4885385-4885366 | None:intergenic | 70.0% |
| ! | AACCAGTGCCCCGGGGGCAC+CGG | + | chr5.1:4885490-4885509 | MS.gene20374:intron | 75.0% |
| ! | AACCAGTGCCCCGGGGGCAC+CGG | - | chr5.1:4885509-4885490 | None:intergenic | 75.0% |
| ! | AACCGGTGCCCCCGGGGCAC+TGG | + | chr5.1:4885360-4885379 | MS.gene20374:intron | 80.0% |
| ! | AACCGGTGCCCCCGGGGCAC+TGG | - | chr5.1:4885379-4885360 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 4883826 | 4886498 | 4883826 | ID=MS.gene20374 |
| chr5.1 | mRNA | 4883826 | 4886498 | 4883826 | ID=MS.gene20374.t1;Parent=MS.gene20374 |
| chr5.1 | exon | 4883826 | 4884088 | 4883826 | ID=MS.gene20374.t1.exon1;Parent=MS.gene20374.t1 |
| chr5.1 | CDS | 4883826 | 4884088 | 4883826 | ID=cds.MS.gene20374.t1;Parent=MS.gene20374.t1 |
| chr5.1 | exon | 4884213 | 4884291 | 4884213 | ID=MS.gene20374.t1.exon2;Parent=MS.gene20374.t1 |
| chr5.1 | CDS | 4884213 | 4884291 | 4884213 | ID=cds.MS.gene20374.t1;Parent=MS.gene20374.t1 |
| chr5.1 | exon | 4885237 | 4885305 | 4885237 | ID=MS.gene20374.t1.exon3;Parent=MS.gene20374.t1 |
| chr5.1 | CDS | 4885237 | 4885305 | 4885237 | ID=cds.MS.gene20374.t1;Parent=MS.gene20374.t1 |
| chr5.1 | exon | 4886337 | 4886498 | 4886337 | ID=MS.gene20374.t1.exon4;Parent=MS.gene20374.t1 |
| chr5.1 | CDS | 4886337 | 4886498 | 4886337 | ID=cds.MS.gene20374.t1;Parent=MS.gene20374.t1 |
| Gene Sequence |
| Protein sequence |
